Query gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 82 No_of_seqs 3 out of 5 Neff 1.7 Searched_HMMs 13730 Date Mon May 23 11:05:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780203.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2liga_ a.24.2.1 (A:) Aspartat 40.8 8.7 0.00063 18.2 2.6 27 43-69 99-125 (157) 2 d2asra_ a.24.2.1 (A:) Aspartat 36.0 10 0.00076 17.7 2.4 27 43-69 86-112 (142) 3 d1f6ya_ c.1.21.2 (A:) Methylte 27.6 22 0.0016 15.8 3.2 74 2-79 125-205 (262) 4 d2ea9a1 d.110.8.1 (A:8-110) Hy 23.0 20 0.0015 16.0 2.0 25 12-36 47-71 (103) 5 d1ug2a_ a.4.1.3 (A:) 2610100b2 22.1 28 0.002 15.2 2.8 22 9-30 69-90 (95) 6 d2inwa1 d.110.8.1 (A:4-120) Hy 21.2 24 0.0017 15.6 2.0 24 12-35 58-81 (117) 7 d1r89a1 a.160.1.3 (A:143-257) 17.8 21 0.0015 16.0 1.1 38 19-67 7-44 (115) 8 d1uj8a1 a.159.5.1 (A:13-76) Ir 15.0 27 0.002 15.2 1.2 37 23-68 7-43 (64) 9 d1h3oa_ a.22.1.3 (A:) TAF(II)- 13.1 47 0.0034 13.9 2.3 17 47-63 28-46 (50) 10 d2c4va1 c.23.13.1 (A:1-158) Ty 12.6 32 0.0024 14.8 1.0 27 42-68 126-152 (158) No 1 >d2liga_ a.24.2.1 (A:) Aspartate receptor, ligand-binding domain {Salmonella typhimurium [TaxId: 90371]} Probab=40.77 E-value=8.7 Score=18.16 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 002289999999999999971885501 Q gi|254780203|r 43 HGKGYESYISHVCELIELLKNKDFDGV 69 (82) Q Consensus 43 ~~~g~e~Y~~H~CaLi~lLen~~f~~~ 69 (82) -.++|..|..-.-+||.+|+++++++. T Consensus 99 l~~sY~~~~~aL~el~~~L~~gni~af 125 (157) T d2liga_ 99 VDEKYQRYQAALAELIQFLDNGNMDAY 125 (157) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 999999999999999999877999999 No 2 >d2asra_ a.24.2.1 (A:) Aspartate receptor, ligand-binding domain {Escherichia coli [TaxId: 562]} Probab=36.05 E-value=10 Score=17.71 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 002289999999999999971885501 Q gi|254780203|r 43 HGKGYESYISHVCELIELLKNKDFDGV 69 (82) Q Consensus 43 ~~~g~e~Y~~H~CaLi~lLen~~f~~~ 69 (82) -+++|..|..-.-+||.+|+++++++. T Consensus 86 l~~~Y~~y~~aL~el~~~L~~g~i~aF 112 (142) T d2asra_ 86 IDEKYKNYYTALTELIDYLDYGNTGAY 112 (142) T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 999999999999999999877998999 No 3 >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} Probab=27.57 E-value=22 Score=15.77 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=43.8 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-HHCCHH--CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHH Q ss_conf 830014018999999799999998-310300--1253224786200228999999999999997188550----157887 Q gi|254780203|r 2 DDRKYRPSKEEVRDAFPELIKALE-KGLSTF--DVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDG----VEIERK 74 (82) Q Consensus 2 ~d~kYRPs~eevR~afPkl~K~~E-k~ls~y--~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~----~~i~rk 74 (82) ++..+.-..+++...+-+++...+ -++..= -+||++-|....++. -.|.-++++.|+.-..-| +.+-|| T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~Ii~DPgi~~~~~~~~~----~~~~le~l~~l~~~~~~g~~~l~G~Sn~ 200 (262) T d1f6ya_ 125 NKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDH----APEVLKTLQQIKMLADPAPKTVLGLSNV 200 (262) T ss_dssp CSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTH----HHHHHHHHHHHHTCCSSCCEEEEEGGGG T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCCHH----HHHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 776655579999999999999999759998980125202210343167----8999999999999985233336501025 Q ss_pred HHHHH Q ss_conf 65322 Q gi|254780203|r 75 SYNLR 79 (82) Q Consensus 75 ~~n~r 79 (82) ||++. T Consensus 201 Sfg~~ 205 (262) T d1f6ya_ 201 SQNCQ 205 (262) T ss_dssp GTTCS T ss_pred CCCCC T ss_conf 56651 No 4 >d2ea9a1 d.110.8.1 (A:8-110) Hypothetical protein YfjZ {Escherichia coli [TaxId: 562]} Probab=23.02 E-value=20 Score=16.04 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCCC Q ss_conf 9999979999999831030012532 Q gi|254780203|r 12 EVRDAFPELIKALEKGLSTFDVEPL 36 (82) Q Consensus 12 evR~afPkl~K~~Ek~ls~y~VdPL 36 (82) ..-.|||.+||-+|..+.+=..+|- T Consensus 47 ~Ld~aFP~~i~qle~ml~sGeL~pr 71 (103) T d2ea9a1 47 KLDVVFPHFISQIESMLTTGELNPR 71 (103) T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999999999999998645998967 No 5 >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Probab=22.10 E-value=28 Score=15.15 Aligned_cols=22 Identities=23% Similarity=0.384 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHHHHCCH Q ss_conf 1899999979999999831030 Q gi|254780203|r 9 SKEEVRDAFPELIKALEKGLST 30 (82) Q Consensus 9 s~eevR~afPkl~K~~Ek~ls~ 30 (82) +.++||+-|-.||+-|++.++- T Consensus 69 s~~qvr~Rf~~Lm~lf~~~~e~ 90 (95) T d1ug2a_ 69 TPVEVSHRFRELMQLFHTACES 90 (95) T ss_dssp CHHHHHHHHHHHHHHHHHCSSS T ss_pred CHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999974324 No 6 >d2inwa1 d.110.8.1 (A:4-120) Hypothetical protein YeeU {Shigella flexneri [TaxId: 623]} Probab=21.22 E-value=24 Score=15.61 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCC Q ss_conf 999997999999983103001253 Q gi|254780203|r 12 EVRDAFPELIKALEKGLSTFDVEP 35 (82) Q Consensus 12 evR~afPkl~K~~Ek~ls~y~VdP 35 (82) ..-.|||.+||-+|..+..=..+| T Consensus 58 ~Ld~aFP~~ikqlE~ml~sGeL~p 81 (117) T d2inwa1 58 HLDQAFPLLMKQLELMLTGGELNP 81 (117) T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 999999999999999864478782 No 7 >d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=17.84 E-value=21 Score=15.95 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=24.8 Q ss_pred HHHHHHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9999998310300125322478620022899999999999999718855 Q gi|254780203|r 19 ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFD 67 (82) Q Consensus 19 kl~K~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~ 67 (82) .|+|.|-|++..|.- ++-.+||-|| +|+|.- +.-|.|. T Consensus 7 rLlK~FlK~igvYGa-------E~~~~GFSGY---l~ElLi-~~YGsF~ 44 (115) T d1r89a1 7 RLLKGFLKANGIYGA-------EYKVRGFSGY---LCELLI-VFYGSFL 44 (115) T ss_dssp HHHHHHHHHTTCBCC-------STTTCCBCHH---HHHHHH-HHHSSHH T ss_pred HHHHHHHHHCCCCCH-------HHHCCCCHHH---HHHHHH-HHHCCHH T ss_conf 999999986685436-------7651762169---999999-9977799 No 8 >d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]} Probab=15.01 E-value=27 Score=15.22 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=28.0 Q ss_pred HHHHHCCHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 9983103001253224786200228999999999999997188550 Q gi|254780203|r 23 ALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDG 68 (82) Q Consensus 23 ~~Ek~ls~y~VdPL~~Pv~i~~~g~e~Y~~H~CaLi~lLen~~f~~ 68 (82) +.+=++++++--|=+.|..+ .|+.-+..||+| .+|+. T Consensus 7 ~~dIA~~L~e~~pdvDP~~i---rFtDL~~wV~~L------~~F~D 43 (64) T d1uj8a1 7 SREIGEALYDAYPDLDPKTV---RFTDMHQWICDL------EDFDD 43 (64) T ss_dssp HHHHHHHHHHHSTTSCGGGC---CHHHHHHHHHTS------TTBCS T ss_pred HHHHHHHHHHHCCCCCCCEE---EHHHHHHHHHCC------CCCCC T ss_conf 99999999987889897873---159999999628------78789 No 9 >d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]} Probab=13.13 E-value=47 Score=13.86 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=12.1 Q ss_pred HHHHHHHHHH--HHHHHHC Q ss_conf 8999999999--9999971 Q gi|254780203|r 47 YESYISHVCE--LIELLKN 63 (82) Q Consensus 47 ~e~Y~~H~Ca--Li~lLen 63 (82) .-.|+||+|. |-+++|+ T Consensus 28 V~~lISHA~QeRLk~lvEK 46 (50) T d1h3oa_ 28 VVSYVSHATQQRLQNLVEK 46 (50) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999889999999999998 No 10 >d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]} Probab=12.59 E-value=32 Score=14.79 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=19.5 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 200228999999999999997188550 Q gi|254780203|r 42 SHGKGYESYISHVCELIELLKNKDFDG 68 (82) Q Consensus 42 i~~~g~e~Y~~H~CaLi~lLen~~f~~ 68 (82) |-|.|..||+.-+-+|+++|.+.+.-+ T Consensus 126 I~G~G~~gY~~Al~~l~~~l~~~~~~~ 152 (158) T d2c4va1 126 IMGFGPLGYNMALMAMVNILAEMKAFQ 152 (158) T ss_dssp EESSTTHHHHHHHHHHHHHHHHHHHHH T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 963885789999999999998558788 Done!