BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780203|ref|YP_003064616.1| hypothetical protein
CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62]
(82 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
Results from round 1
>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 82
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60
MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL
Sbjct: 1 MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60
Query: 61 LKNKDFDGVEIERKSYNLRKNT 82
LKNKDFDGVEIERKSYNLRKNT
Sbjct: 61 LKNKDFDGVEIERKSYNLRKNT 82
>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 101
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 2 DDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY--ESYISHVCELIE 59
+ +YRP ++EVR+AFP+++K++EK L + V+PL PV+ +G E Y H+C LI+
Sbjct: 12 EGNQYRPLRKEVRNAFPKILKSIEKALEPY-VDPLIEPVEIGKEGMVDEGYRLHICALIK 70
Query: 60 LLKNKD 65
LL+N+
Sbjct: 71 LLENRS 76
>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 252
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 3 DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61
D KYRPS E +R P +L+K E +S + +P+ + Y H C L+ L
Sbjct: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-----VDPLTPRDISFTQYEKHACALVNWL 231
Query: 62 KNKDFDGVEIERKSYNLRKN 81
+ F+ + I RK++N R
Sbjct: 232 EKGKFNEMSIARKAFNRRSQ 251
>gi|195953045|ref|YP_002121335.1| glutamyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
gi|229470619|sp|B4U896|SYE_HYDS0 RecName: Full=Glutamyl-tRNA synthetase; AltName:
Full=Glutamate--tRNA ligase; Short=GluRS
gi|195932657|gb|ACG57357.1| glutamyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
Length = 464
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 3 DRKYRPSKEEVRDAFPE------LIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCE 56
D+ Y + +R+ PE L+ LEK T D+E LK VK+ K Y +Y+ V +
Sbjct: 306 DKLYWLNGVYIREILPEDRLLEDLLSFLEKAYGTVDIEYLKKIVKATRKEYNTYLEAVEK 365
Query: 57 LIELLKNKDFDGV------EIERKSYNLRKN 81
L K K+ D V +I+RK + L K
Sbjct: 366 LRPFFKEKELDEVAKEELSKIDRKVFELLKQ 396
>gi|117926863|ref|YP_867480.1| hypothetical protein Mmc1_3589 [Magnetococcus sp. MC-1]
gi|117610619|gb|ABK46074.1| Tetratricopeptide TPR_2 repeat protein [Magnetococcus sp. MC-1]
Length = 235
Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 6 YRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKD 65
YR ++ D + + ++AL+K E LK HG+ +SH+ E L K D
Sbjct: 56 YRAQDQDASDRYIQALEALDKDQLKVAAEALKGLQTKHGEHGYGLLSHLSEAQMLAKQGD 115
Query: 66 FDGV 69
FDG
Sbjct: 116 FDGA 119
>gi|118626591|emb|CAL34031.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
gi|308523750|gb|ADO33717.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
Length = 188
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
EL+K L+ G+STFD++ + KN V S KGY+ + ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68
>gi|308523732|gb|ADO33705.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
gi|308523738|gb|ADO33709.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
gi|308523741|gb|ADO33711.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
Length = 188
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
EL+K L+ G+STFD++ + KN V S KGY+ + ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68
>gi|308523723|gb|ADO33699.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
gi|308523726|gb|ADO33701.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
gi|308523729|gb|ADO33703.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
gi|308523735|gb|ADO33707.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
gi|308523744|gb|ADO33713.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
gi|308523747|gb|ADO33715.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
Length = 188
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
EL+K L+ G+STFD++ + KN V S KGY+ + ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68
>gi|118626588|emb|CAL34029.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
Length = 188
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
EL+K L+ G+STFD++ + KN V S KGY+ + ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68
>gi|308524928|gb|ADO33792.1| methionine aminopeptidase [Candidatus Phytoplasma ulmi]
Length = 183
Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
EL+K L+ G+STFD++ + KN V S KGY+ + ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNGVVSAFKGYQGFGGYIC 68
>gi|118626579|emb|CAL34023.1| methionine aminopeptidase [Candidatus Phytoplasma vitis]
Length = 188
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
EL+K L+ G+STFD++ + KN V S KGY+ + ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNDVISAFKGYQGFGGYIC 68
>gi|118626564|emb|CAL34013.1| methionine aminopeptidase [Candidatus Phytoplasma vitis]
Length = 188
Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 19 ELIKALEKGLSTFDVEPL------KNPVKSHGKGYESYISHVC 55
EL+K L+ G+STFD++ + KN V S KGY+ + ++C
Sbjct: 26 ELLKFLKVGISTFDLDMIAFDLMKKNDVISAFKGYQGFGGYIC 68
Searching..................................................done
Results from round 2
>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 82
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60
MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL
Sbjct: 1 MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60
Query: 61 LKNKDFDGVEIERKSYNLRKNT 82
LKNKDFDGVEIERKSYNLRKNT
Sbjct: 61 LKNKDFDGVEIERKSYNLRKNT 82
>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 101
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 2 DDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY--ESYISHVCELIE 59
+ +YRP ++EVR+AFP+++K++EK L + V+PL PV+ +G E Y H+C LI+
Sbjct: 12 EGNQYRPLRKEVRNAFPKILKSIEKALEPY-VDPLIEPVEIGKEGMVDEGYRLHICALIK 70
Query: 60 LLKNKD 65
LL+N+
Sbjct: 71 LLENRS 76
>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 252
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 3 DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61
D KYRPS E +R P +L+K E +S + V+PL P + Y H C L+ L
Sbjct: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-VDPL-TPRDI---SFTQYEKHACALVNWL 231
Query: 62 KNKDFDGVEIERKSYNLR 79
+ F+ + I RK++N R
Sbjct: 232 EKGKFNEMSIARKAFNRR 249
>gi|66820877|ref|XP_643991.1| hypothetical protein DDB_G0274829 [Dictyostelium discoideum AX4]
gi|60472354|gb|EAL70307.1| hypothetical protein DDB_G0274829 [Dictyostelium discoideum AX4]
Length = 414
Score = 34.2 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 13 VRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYES------YISHVCELIELLKNKDF 66
++D F E K LE + F+++P+ + H +G S + H +I+LLKN+
Sbjct: 174 IKDCFIEHHKILE-SIEQFNLKPVIEWCRLHREGLSSIDSSLEFKLHRLHIIQLLKNQKS 232
Query: 67 D 67
D
Sbjct: 233 D 233
>gi|304397245|ref|ZP_07379124.1| peptidase T [Pantoea sp. aB]
gi|304355394|gb|EFM19762.1| peptidase T [Pantoea sp. aB]
Length = 409
Score = 34.2 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 4 RKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKG 46
YR +E+V + FP +I + + D+EP+ P++ G
Sbjct: 317 NSYRNMREKV-EPFPHIIDLALQAMRDCDIEPVVKPIRGGTDG 358
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.309 0.137 0.378
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,550,377,160
Number of Sequences: 13984884
Number of extensions: 55832342
Number of successful extensions: 117110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 117089
Number of HSP's gapped (non-prelim): 44
length of query: 82
length of database: 4,792,584,752
effective HSP length: 53
effective length of query: 29
effective length of database: 4,051,385,900
effective search space: 117490191100
effective search space used: 117490191100
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 75 (33.5 bits)