BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780203|ref|YP_003064616.1| hypothetical protein
CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 82

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60
          MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL
Sbjct: 1  MDDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIEL 60

Query: 61 LKNKDFDGVEIERKSYNLRKNT 82
          LKNKDFDGVEIERKSYNLRKNT
Sbjct: 61 LKNKDFDGVEIERKSYNLRKNT 82


>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 252

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 3   DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61
           D KYRPS E +R   P +L+K  E  +S + V+PL  P       +  Y  H C L+  L
Sbjct: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-VDPL-TPRDI---SFTQYEKHACALVNWL 231

Query: 62  KNKDFDGVEIERKSYNLR 79
           +   F+ + I RK++N R
Sbjct: 232 EKGKFNEMSIARKAFNRR 249


>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 101

 Score = 85.6 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 2  DDRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY--ESYISHVCELIE 59
          +  +YRP ++EVR+AFP+++K++EK L  + V+PL  PV+   +G   E Y  H+C LI+
Sbjct: 12 EGNQYRPLRKEVRNAFPKILKSIEKALEPY-VDPLIEPVEIGKEGMVDEGYRLHICALIK 70

Query: 60 LLKNK 64
          LL+N+
Sbjct: 71 LLENR 75


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.309    0.129    0.347 

Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,934,216
Number of Sequences: 13984884
Number of extensions: 15440300
Number of successful extensions: 29885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29878
Number of HSP's gapped (non-prelim): 3
length of query: 82
length of database: 4,792,584,752
effective HSP length: 53
effective length of query: 29
effective length of database: 4,051,385,900
effective search space: 117490191100
effective search space used: 117490191100
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 75 (33.6 bits)