RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780203|ref|YP_003064616.1| hypothetical protein
CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62]
(82 letters)
>gnl|CDD|114849 pfam06154, YagB_YeeU_YfjZ, YagB/YeeU/YfjZ family. This family of
proteins includes three proteins from E. coli YagB,
YeeU and YfjZ. The function of these proteins is
unknown. They are about 120 amino acids in length.
Length = 104
Score = 27.7 bits (62), Expect = 0.70
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 15 DAFPELIKALEKGLSTFDVEP 35
+AFP IK LE L + ++ P
Sbjct: 49 EAFPHFIKQLELMLLSGELNP 69
>gnl|CDD|182323 PRK10236, PRK10236, hypothetical protein; Provisional.
Length = 237
Score = 26.8 bits (59), Expect = 1.2
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 28 LSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVEIERK 74
L F + + N ++ HGK Y + + V + ++L +K+ EIE++
Sbjct: 70 LQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQ 116
>gnl|CDD|180340 PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.
Length = 1244
Score = 26.0 bits (58), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 14 RDAFPELIKALEKG---LSTFDVEPLK-NPVKSH 43
RDAFP +I + ++ D EP + NPV++H
Sbjct: 954 RDAFPNVIALFDDAVRAVAALD-EPDEDNPVRAH 986
>gnl|CDD|167230 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 25.2 bits (55), Expect = 3.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 47 YESYISHVCELIELLKNKDFDGVEIERKSYNLRKN 81
YE IS+ IE+ N D EI+ N KN
Sbjct: 464 YEK-ISNTSHAIEVKPNHGIDKTEIDIMLENAYKN 497
>gnl|CDD|179692 PRK03979, PRK03979, ADP-specific phosphofructokinase; Provisional.
Length = 463
Score = 25.3 bits (56), Expect = 3.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 42 SHGKGYESYISHVCELIELLKNKDFD 67
S GK E Y+ E I+LLK K+ D
Sbjct: 239 SDGKTAEYYLKRAKEDIKLLKKKNKD 264
>gnl|CDD|162406 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff.
Length = 467
Score = 25.4 bits (56), Expect = 3.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 9 SKEEVRDAFPELIKALEKGLSTFDVEPL 36
S EE DA PE+I LE + PL
Sbjct: 318 SVEEGLDALPEVIYHLEDPTTIRASIPL 345
>gnl|CDD|147852 pfam05925, IpgD, Enterobacterial virulence protein IpgD. This
family consists of several enterobacterial IpgD like
virulence factor proteins. In the Gram-negative pathogen
Shigella flexneri, the virulence factor IpgD is
translocated directly into eukaryotic cells and acts as
a potent inositol 4-phosphatase that specifically
dephosphorylates phosphatidylinositol 4,5-bisphosphate
[PtdIns(4,5)P(2)] into phosphatidylinositol
5-monophosphate [PtdIns(5)P] that then accumulates.
Transformation of PtdIns(4,5)P(2) into PtdIns(5)P by
IpgD is responsible for dramatic morphological changes
of the host cell, leading to a decrease in membrane
tether force associated with membrane blebbing and actin
filament remodelling.
Length = 569
Score = 25.0 bits (54), Expect = 4.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 8 PSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY 47
+KE R A A +K L+ + EP+K + +G Y
Sbjct: 154 KAKEAHRFAASAFKDAFDKQLNNKNWEPIKKNINHNGHHY 193
>gnl|CDD|181851 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 25.3 bits (56), Expect = 4.1
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 10 KEEVRDAFPELIKALEKGLSTFDV 33
+E DA ++I LE T+DV
Sbjct: 302 VQEGLDALRDVIYHLE----TYDV 321
>gnl|CDD|183436 PRK12321, cobN, cobaltochelatase subunit CobN; Reviewed.
Length = 1100
Score = 25.0 bits (55), Expect = 4.9
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 14 RDAFPELIKALEKG---LSTFDVEPLKNP 39
RD FP LI ++ ++ + NP
Sbjct: 834 RDVFPALIALFDQAARAVAAREEADEDNP 862
>gnl|CDD|148092 pfam06277, EutA, Ethanolamine utilisation protein EutA. This
family consists of several bacterial EutA ethanolamine
utilisation proteins. The EutA protein is thought to
protect the lyase (EutBC) from inhibition by CNB12.
Length = 473
Score = 24.5 bits (54), Expect = 5.8
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 7 RPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPV--KSHGKGYESY--ISHVCELI 58
+PS ++ L +A+ + L+ FD+E PV G S+ + + E I
Sbjct: 342 KPSLDDEEQGNEPLAEAIRQALAWFDLEGEVQPVALAFPGLKNPSFQAVQALAEAI 397
>gnl|CDD|180495 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 24.6 bits (54), Expect = 5.8
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 32 DVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDGVEIERKSYNLRK 80
VE +KS K I+ +LI+ LK +D V I R L+K
Sbjct: 414 SVEEDIARIKSEIKFLNGSIN-PYDLIDELKKTMWDYVSIVRNEKGLKK 461
>gnl|CDD|183330 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional.
Length = 272
Score = 24.8 bits (55), Expect = 6.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 10 KEEVRDAFPELIKALEKG 27
EVR+A E+I L+ G
Sbjct: 24 DTEVREAVEEVIDLLDSG 41
>gnl|CDD|128884 smart00636, Glyco_18, Glycosyl hydrolase family 18.
Length = 334
Score = 24.6 bits (54), Expect = 6.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 58 IELLKNKDFDGVEI 71
+ LK FDG++I
Sbjct: 100 VSFLKKYGFDGIDI 113
>gnl|CDD|177379 PHA02544, 44, clamp loader, small subunit; Provisional.
Length = 316
Score = 24.6 bits (54), Expect = 6.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 52 SHVCELIELLKNKDFDGV 69
S + +++E LK KDF V
Sbjct: 230 SDIDDVVEALKAKDFKAV 247
>gnl|CDD|131310 TIGR02257, cobalto_cobN, cobaltochelatase, CobN subunit.
Length = 1122
Score = 23.9 bits (52), Expect = 9.4
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 14 RDAFPELIKALEKGL---STFDVEPLKNPVKSHGKGYESYISHV 54
RDAFP LI ++K + + D NP+ + + +
Sbjct: 848 RDAFPNLIALVDKAVQAVAQLDEPDELNPLAARTRAEGRASPRI 891
>gnl|CDD|132040 TIGR02995, ectoine_ehuB, ectoine/hydroxyectoine ABC transporter
solute-binding protein. Members of this family are the
extracellular solute-binding proteins of ABC
transporters that closely resemble amino acid
transporters. The member from Sinorhizobium meliloti is
involved in ectoine uptake, both for osmoprotection and
for catabolism. All other members of the seed alignment
are found associated with ectoine catabolic genes.
Length = 275
Score = 23.7 bits (51), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 6 YRPSKEEVRDAF-PELIKALEKG 27
+RP +E+RDAF EL K E G
Sbjct: 228 FRPEDKELRDAFNVELAKLKESG 250
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.313 0.135 0.381
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,372,353
Number of extensions: 72881
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 37
Length of query: 82
Length of database: 5,994,473
Length adjustment: 51
Effective length of query: 31
Effective length of database: 4,892,465
Effective search space: 151666415
Effective search space used: 151666415
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.3 bits)