RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780203|ref|YP_003064616.1| hypothetical protein
CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62]
(82 letters)
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, ligase; HET: GLU ATP; 1.80A
{Thermus thermophilus} (A:369-468)
Length = 100
Score = 26.7 bits (59), Expect = 1.0
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 3 DRKYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHV 54
K + EE EL L + L+ ++ + V
Sbjct: 12 SEKAQRKLEEGLPLLKELYPRLRA-QEEWTEAALEALLRGFAAEKGVKLGQV 62
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus}
(A:1-102,A:293-322)
Length = 132
Score = 26.8 bits (59), Expect = 1.1
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 9 SKEEVRDA--FPELIKALEKGLSTFDVEPLKNPVKSH 43
++EEV E + A+E+ + + + P K +
Sbjct: 7 TQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVY 43
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella
pertussis tohama I, structural genomics, PSI-2, protein
structure initiative; 1.70A {Bordetella pertussis}
(A:1-118,A:289-313)
Length = 143
Score = 26.4 bits (58), Expect = 1.2
Identities = 4/37 (10%), Positives = 7/37 (18%), Gaps = 2/37 (5%)
Query: 9 SKEEVRDA--FPELIKALEKGLSTFDVEPLKNPVKSH 43
+ DA + L F +
Sbjct: 8 DDAXIEDAVTPQAAQEVLHAAFLDFGRGSAAXQRRVR 44
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine,
binds L-proline, 2 helix bundle, beta barrel, rossmann
fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas
putida} (A:1-126,A:296-350)
Length = 181
Score = 25.5 bits (56), Expect = 2.4
Identities = 7/30 (23%), Positives = 7/30 (23%), Gaps = 3/30 (10%)
Query: 9 SKEEVRDAFPELIKALEKGL---STFDVEP 35
V EL AL FD
Sbjct: 15 HDIGVAPFIGELAAALRDDFKRWQAFDKSA 44
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.10A {Escherichia coli} (A:)
Length = 105
Score = 25.5 bits (56), Expect = 2.8
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 9 SKEEVR---DAFPELIKALEKGLSTFDVEP 35
S E FP I +E L+T ++ P
Sbjct: 41 SDAECPKLDVVFPHFISQIESMLTTGELNP 70
>1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis
receptor, unbound; 1.85A {Salmonella typhimurium} (A:)
Length = 146
Score = 25.2 bits (55), Expect = 3.0
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 32 DVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFDG 68
+ V + Y+ Y + + ELI+ L N + D
Sbjct: 81 AMAEASANVD---EKYQRYQAALAELIQFLDNGNMDA 114
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase,
glycolysis, mutant, permutation, permuted sequence,
protein folding; 2.30A {Saccharomyces cerevisiae}
(A:132-346)
Length = 215
Score = 25.3 bits (55), Expect = 3.1
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 46 GYESYISHVCE----LIELLKNKDFDGVEIERKSYNL 78
G ISHV +ELL+ K+ GV + +L
Sbjct: 179 GVTDKISHVSTGGGASLELLEGKELPGVAFLSEKKSL 215
>1vpr_A Luciferase; beta barrel, fatty acid binding protein,
lipocalin, PH regulation, luminescent protein; 1.80A
{Lingulodinium polyedrum} (A:)
Length = 374
Score = 24.9 bits (54), Expect = 4.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 30 TFDVEPLKNPVKSHGKGYESYISHVCELIEL-LKNKD 65
F + L P + GK +ES ++ E EL KN
Sbjct: 37 EFHEDGLHKPXEVGGKKFESGFHYLLECHELGGKNAS 73
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus}
(A:1-167)
Length = 167
Score = 24.6 bits (52), Expect = 4.4
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 7/39 (17%)
Query: 1 MDDRKYRPSK-------EEVRDAFPELIKALEKGLSTFD 32
M+D RP E ++ ++A + +
Sbjct: 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLE 39
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial;
active site phosphohistidine residue; HET: NEP GTP;
2.08A {Sus scrofa} (B:1-18,B:110-243)
Length = 152
Score = 24.1 bits (52), Expect = 6.7
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 8 PSKEEVRDAFPELIKAL----EKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKN 63
EEV + PELI +G+ + + + G + +L L
Sbjct: 47 VDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLK 106
Query: 64 KDFDGVEI 71
D VE+
Sbjct: 107 IDATQVEV 114
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase,
complex enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} (A:68-170)
Length = 103
Score = 23.9 bits (52), Expect = 7.4
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 8 PSKEEVRDAFPELIKALEKGLSTFDVEPL---KNPVKSH-----GKGYESYISHVCELIE 59
P + R+ +E+ + + L + PV S K + +I +
Sbjct: 13 PQEPSARE---VARAYVEEVVRLEKLTVLGWREVPVNSDVLGIQAKNNQPHIEQIL---- 65
Query: 60 LLKNKDFDGVEIERKSYNLRK 80
+ + G E++R+ Y R
Sbjct: 66 VTCPEGCAGDELDRRLYIARS 86
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.313 0.135 0.381
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 636,608
Number of extensions: 24944
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 17
Length of query: 82
Length of database: 4,956,049
Length adjustment: 46
Effective length of query: 36
Effective length of database: 3,401,019
Effective search space: 122436684
Effective search space used: 122436684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.4 bits)