Query gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 180
No_of_seqs 2 out of 4
Neff 1.1
Searched_HMMs 33803
Date Mon May 23 11:40:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780204.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1vr8_A GTP binding regulator; 17.5 67 0.002 13.4 1.7 20 38-57 67-86 (142)
2 >1knz_A NS34, NSP3, nonstructu 15.8 29 0.00086 15.6 -0.5 13 151-163 26-38 (53)
3 >2a6h_E RNA polymerase omega c 14.6 80 0.0024 12.9 1.9 29 103-131 1-29 (77)
4 >3g4g_A DPDE3, PDE43, CAMP-spe 13.4 86 0.0025 12.7 3.1 45 12-57 5-50 (62)
5 >3dyn_A High affinity CGMP-spe 12.0 95 0.0028 12.4 2.9 46 12-57 37-82 (97)
6 >1mwv_A Bpkatg, catalase-perox 11.3 21 0.00062 16.5 -2.3 27 32-62 59-85 (110)
7 >1taz_A Calcium/calmodulin-dep 11.2 1E+02 0.003 12.3 2.9 48 12-59 6-53 (98)
8 >1evl_A Threonyl-tRNA syntheta 11.1 20 0.00059 16.6 -2.5 12 51-62 10-21 (37)
9 >2h1n_A Oligoendopeptidase F; 9.5 65 0.0019 13.4 -0.3 18 108-125 62-79 (126)
10 >1keh_A Precursor of cephalosp 9.4 1.2E+02 0.0035 11.9 2.2 22 139-160 19-40 (109)
No 1
>>1vr8_A GTP binding regulator; TM1622, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 1.75A {Thermotoga maritima} (A:)
Probab=17.49 E-value=67 Score=13.37 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=17.0
Q ss_pred HHHCHHHHHHHHHHCCCCCH
Q ss_conf 52067899999760577305
Q gi|254780204|r 38 VAETPKIMWKAFKKSSGRWQ 57 (180)
Q Consensus 38 vaetpkimwkafkkssgrwq 57 (180)
..|.||--||++.|..|-|-
T Consensus 67 ~dE~aK~~Wkki~K~~G~~l 86 (142)
T 1vr8_A 67 KGEEAKKIWKKLNGRAGFVS 86 (142)
T ss_dssp ESTTHHHHHHHHHTC---CC
T ss_pred CCCCHHHHHHHHHHHCCCEE
T ss_conf 58337789999987619658
No 2
>>1knz_A NS34, NSP3, nonstructural RNA-binding protein 34; protein-ssRNA complex, viral protein/RNA complex; 2.45A {Simian rotavirus A} (A:58-110)
Probab=15.84 E-value=29 Score=15.61 Aligned_cols=13 Identities=31% Similarity=0.619 Sum_probs=10.3
Q ss_pred CCHHCCCCCCCCC
Q ss_conf 2000015555320
Q gi|254780204|r 151 PNRYWHTDSASIG 163 (180)
Q Consensus 151 ~~RYwhtdsasig 163 (180)
-||-|+||+..+.
T Consensus 26 RN~nWmtd~~Tva 38 (53)
T 1knz_A 26 RNRNWLADTSRPA 38 (53)
T ss_dssp HHHHHHHCTTHHH
T ss_pred HHHHHHHCCHHHH
T ss_conf 4033430200798
No 3
>>2a6h_E RNA polymerase omega chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (E:1-77)
Probab=14.59 E-value=80 Score=12.91 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=22.3
Q ss_pred HCCHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23321761530000016699999988535
Q gi|254780204|r 103 IAIPTIEEGMTMNDIKYERKQVISRKAKE 131 (180)
Q Consensus 103 iaiptiEE~l~lNDIKYE~~Q~I~~K~KE 131 (180)
++-|+|++||...|-||.=-.+.+..|++
T Consensus 1 M~~psid~ll~kv~srY~Lvi~aAKRArq 29 (77)
T 2a6h_E 1 MAEPGIDKLFGMVDSKYRLTVVVAKRAQQ 29 (77)
T ss_dssp -CCTTHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCEEEEHHHHHHHHH
T ss_conf 98635778862244422441353898999
No 4
>>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* (A:360-421)
Probab=13.43 E-value=86 Score=12.71 Aligned_cols=45 Identities=13% Similarity=0.339 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHCCCCCH
Q ss_conf 532335999999999988999988655-2067899999760577305
Q gi|254780204|r 12 TVDYGGLILSFLSVIVSPVYSYFRHTV-AETPKIMWKAFKKSSGRWQ 57 (180)
Q Consensus 12 tvdygglilsflsvivspvysyfrhtv-aetpkimwkafkkssgrwq 57 (180)
+.+-...-+.|+..||.|.|.-+-.-+ .+.+. +-+.....-.+|+
T Consensus 5 ~~~~~k~QigFi~~iv~Plf~~l~~~l~p~~~~-~l~~l~~N~~~W~ 50 (62)
T 3g4g_A 5 NASVEKSQVGFIDYIVHPLWETWADLVHPDAQD-ILDTLEDNREWYQ 50 (62)
T ss_dssp SCCHHHHHHHHHHHTHHHHHHHHHHHTTTTTHH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHH
T ss_conf 444688999999999999999999880700799-9999999999999
No 5
>>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphodiesterase 9A; crystallography, phophodiestrase, enzyme mechanism, alternative splicing, hydrolase; HET: PCG IBM; 2.10A {Homo sapiens} (A:233-329)
Probab=12.00 E-value=95 Score=12.45 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCH
Q ss_conf 5323359999999999889999886552067899999760577305
Q gi|254780204|r 12 TVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQ 57 (180)
Q Consensus 12 tvdygglilsflsvivspvysyfrhtvaetpkimwkafkkssgrwq 57 (180)
+++....-++|+..+|.|.|.-+-....+.-..+-...+..--+|+
T Consensus 37 ~~~~~~~Qi~Fi~~iv~Pl~~~l~~~~p~~~~~~~~~l~~N~~~W~ 82 (97)
T 3dyn_A 37 KVTKATAQIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYE 82 (97)
T ss_dssp TCCHHHHHHHHHHHTHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6771768999999999999999999877779999999999999999
No 6
>>1mwv_A Bpkatg, catalase-peroxidase protein KATG; tuberculosis, heme modification, oxidoreductase; HET: HEM; 1.70A {Burkholderia pseudomallei} (A:248-357)
Probab=11.29 E-value=21 Score=16.48 Aligned_cols=27 Identities=26% Similarity=0.644 Sum_probs=16.8
Q ss_pred HHHHHHHHHCHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 9988655206789999976057730555655
Q gi|254780204|r 32 SYFRHTVAETPKIMWKAFKKSSGRWQWYKKS 62 (180)
Q Consensus 32 syfrhtvaetpkimwkafkkssgrwqwykks 62 (180)
+||+--..+. |.-.|-.+|.|||+-+.
T Consensus 59 ~YF~~L~~~e----Wel~kspaGa~Qw~~~d 85 (110)
T 1mwv_A 59 NFFENLFGYE----WELTKSPAGAHQWVAKG 85 (110)
T ss_dssp HHHHHHHHSC----EEEEECTTCCEEEEETT
T ss_pred HHHHHHHCCC----CEEECCCCCCCCCCCCC
T ss_conf 9987552477----56731898761114676
No 7
>>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} (A:268-365)
Probab=11.16 E-value=1e+02 Score=12.28 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHH
Q ss_conf 532335999999999988999988655206789999976057730555
Q gi|254780204|r 12 TVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWY 59 (180)
Q Consensus 12 tvdygglilsflsvivspvysyfrhtvaetpkimwkafkkssgrwqwy 59 (180)
++.-...-+.|+.-||.|.|.-+-+.+.+.-..|-...++....|+=.
T Consensus 6 ~~~~~~sQigFidfiv~Plf~~l~~~~p~~~~~~~~~l~~N~~~W~~~ 53 (98)
T 1taz_A 6 STLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQ 53 (98)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 441078899999999999999999977376688889999988877887
No 8
>>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} (A:55-91)
Probab=11.10 E-value=20 Score=16.62 Aligned_cols=12 Identities=33% Similarity=0.947 Sum_probs=9.8
Q ss_pred HCCCCCHHHHHH
Q ss_conf 057730555655
Q gi|254780204|r 51 KSSGRWQWYKKS 62 (180)
Q Consensus 51 kssgrwqwykks 62 (180)
+.||.|+.|+..
T Consensus 10 ~~SGH~~~Y~e~ 21 (37)
T 1evl_A 10 EKTGHWDNYKDA 21 (37)
T ss_dssp HHHTHHHHSGGG
T ss_pred HHCCCCCCCCCC
T ss_conf 764865544505
No 9
>>2h1n_A Oligoendopeptidase F; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG, PSI; 3.00A {Geobacillus stearothermophilus} PDB: 2h1j_A (A:1-126)
Probab=9.54 E-value=65 Score=13.44 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=10.0
Q ss_pred HHHCCCCCCCHHHHHHHH
Q ss_conf 761530000016699999
Q gi|254780204|r 108 IEEGMTMNDIKYERKQVI 125 (180)
Q Consensus 108 iEE~l~lNDIKYE~~Q~I 125 (180)
|--..-.+|--|++||.-
T Consensus 62 IR~siDT~DefY~~E~~f 79 (126)
T 2h1n_A 62 IRHTIDTNDEFYKKEQDF 79 (126)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHH
T ss_conf 998105887999999999
No 10
>>1keh_A Precursor of cephalosporin acylase; glutaryl-7-ACA, hydrolase; 2.50A {Brevundimonas diminuta} (A:473-581)
Probab=9.36 E-value=1.2e+02 Score=11.88 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCHHCCCCCC
Q ss_conf 9999898986052000015555
Q gi|254780204|r 139 YQISEFAACLEHPNRYWHTDSA 160 (180)
Q Consensus 139 ~q~sE~~ACL~~~~RYwhtdsa 160 (180)
.-++|+|+-|.+.||-+..||.
T Consensus 19 ~d~~~Ac~vL~~WD~r~~~dS~ 40 (109)
T 1keh_A 19 PEVQAAARLLAAWDRDFTSDSR 40 (109)
T ss_dssp HHHHHHHHHHHTCCSBCCTTCS
T ss_pred HHHHHHHHHHHHCCCCCCCCCH
T ss_conf 6799999998627787887852
Done!