Query         gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 180
No_of_seqs    2 out of 4
Neff          1.1 
Searched_HMMs 13730
Date          Mon May 23 11:09:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780204.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2pila_ d.24.1.1 (A:) Pilin Gc  71.3     3.1 0.00022   19.2   5.1   21   89-109     5-25  (158)
  2 d2cupa3 g.39.1.3 (A:8-34) Four  31.3     3.9 0.00029   18.5  -0.4   11  148-158    15-25  (27)
  3 d1j2oa1 g.39.1.3 (A:1-30) Rhom  25.3     7.4 0.00054   16.9   0.1   10  149-158    20-29  (30)
  4 d1rutx1 g.39.1.3 (X:19-48) LIM  17.5      13 0.00093   15.4  -0.0   10  149-158    19-28  (30)
  5 d1gsoa1 b.84.2.1 (A:328-426) G  12.2      36  0.0026   12.6   1.1   36  128-166    61-96  (99)
  6 d1vr8a1 d.312.1.1 (A:25-154) H   8.8      50  0.0037   11.7   1.7   18   39-56     56-73  (130)
  7 d1knza_ e.34.1.1 (A:) NSP3 hom   8.0      30  0.0022   13.1  -0.5   13  151-163    77-89  (157)
  8 d2ho2a1 b.72.1.1 (A:253-285) A   5.1      70  0.0051   10.8   0.1   14  154-167    18-31  (33)
  9 d1t0hb_ c.37.1.1 (B:) Guanylat   4.7      81  0.0059   10.4   0.2   17  140-156   185-202 (219)
 10 d2di0a1 a.5.2.4 (A:8-70) Activ   4.6      84  0.0061   10.3   0.5    8  145-152    26-33  (63)

No 1  
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=71.34  E-value=3.1  Score=19.21  Aligned_cols=21  Identities=33%  Similarity=0.656  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHCCHHHH
Q ss_conf             799999999999972332176
Q gi|254780204|r   89 ACLVVTAILAILLSIAIPTIE  109 (180)
Q Consensus        89 aclvvtailaillsiaiptiE  109 (180)
                      ..+||.+|++||..|++|...
T Consensus         5 ELlVViaIIgILaaia~P~~~   25 (158)
T d2pila_           5 ELMIVIAIVGILAAVALPAYQ   25 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999


No 2  
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.28  E-value=3.9  Score=18.55  Aligned_cols=11  Identities=36%  Similarity=1.005  Sum_probs=8.4

Q ss_pred             HHCCCHHCCCC
Q ss_conf             60520000155
Q gi|254780204|r  148 LEHPNRYWHTD  158 (180)
Q Consensus       148 L~~~~RYwhtd  158 (180)
                      |.+-|||||.+
T Consensus        15 ~h~knr~wh~~   25 (27)
T d2cupa3          15 VHYKNRFWHDT   25 (27)
T ss_dssp             EEETTEEEETT
T ss_pred             HHCCCCCCCCC
T ss_conf             54222221345


No 3  
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.32  E-value=7.4  Score=16.87  Aligned_cols=10  Identities=40%  Similarity=1.136  Sum_probs=7.2

Q ss_pred             HCCCHHCCCC
Q ss_conf             0520000155
Q gi|254780204|r  149 EHPNRYWHTD  158 (180)
Q Consensus       149 ~~~~RYwhtd  158 (180)
                      .--||+||.+
T Consensus        20 ~a~Dr~WH~~   29 (30)
T d1j2oa1          20 KAIDQYWHED   29 (30)
T ss_dssp             ECSSSEECTT
T ss_pred             HHHHHHHHCC
T ss_conf             9888777038


No 4  
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.46  E-value=13  Score=15.41  Aligned_cols=10  Identities=30%  Similarity=0.843  Sum_probs=6.9

Q ss_pred             HCCCHHCCCC
Q ss_conf             0520000155
Q gi|254780204|r  149 EHPNRYWHTD  158 (180)
Q Consensus       149 ~~~~RYwhtd  158 (180)
                      .--||+||.+
T Consensus        19 ~v~dr~WH~~   28 (30)
T d1rutx1          19 YAMDSYWHSR   28 (30)
T ss_dssp             EETTEEECGG
T ss_pred             CCCHHHHHHH
T ss_conf             0151105341


No 5  
>d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Escherichia coli [TaxId: 562]}
Probab=12.19  E-value=36  Score=12.61  Aligned_cols=36  Identities=17%  Similarity=0.286  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHH
Q ss_conf             853555889999999898986052000015555320121
Q gi|254780204|r  128 KAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRV  166 (180)
Q Consensus       128 K~KE~~~~E~L~q~sE~~ACL~~~~RYwhtdsasigfrv  166 (180)
                      -+..++++|..-++-+.+..+.-++.|+.+|   ||+|.
T Consensus        61 ~~~g~tl~~A~~~aY~~i~~I~~~g~~yR~D---IG~ra   96 (99)
T d1gsoa1          61 TALGHTVAEAQKRAYALMTDIHWDDCFCRKD---IGWRA   96 (99)
T ss_dssp             EEEESSHHHHHHHHHHHTTTCBCTTEECCSC---TTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHCCCCCCCCCCC---HHHHH
T ss_conf             9856999999999999997267999995650---53587


No 6  
>d1vr8a1 d.312.1.1 (A:25-154) Hypothetical protein TM1622 {Thermotoga maritima [TaxId: 2336]}
Probab=8.76  E-value=50  Score=11.72  Aligned_cols=18  Identities=28%  Similarity=0.525  Sum_probs=15.3

Q ss_pred             HHCHHHHHHHHHHCCCCC
Q ss_conf             206789999976057730
Q gi|254780204|r   39 AETPKIMWKAFKKSSGRW   56 (180)
Q Consensus        39 aetpkimwkafkkssgrw   56 (180)
                      .|.||--||.+.|..|-|
T Consensus        56 dE~aK~~Wkki~K~~G~~   73 (130)
T d1vr8a1          56 GEEAKKIWKKLNGRAGFV   73 (130)
T ss_dssp             STTHHHHHHHHHTC---C
T ss_pred             CCCHHHHHHHHHHHCCCE
T ss_conf             833778999998761965


No 7  
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=8.03  E-value=30  Score=13.07  Aligned_cols=13  Identities=31%  Similarity=0.619  Sum_probs=10.1

Q ss_pred             CCHHCCCCCCCCC
Q ss_conf             2000015555320
Q gi|254780204|r  151 PNRYWHTDSASIG  163 (180)
Q Consensus       151 ~~RYwhtdsasig  163 (180)
                      -||-||||++.+.
T Consensus        77 RN~nWmT~~~Tva   89 (157)
T d1knza_          77 RNRNWLADTSRPA   89 (157)
T ss_dssp             HHHHHHHCTTHHH
T ss_pred             HHHHHHHCCCHHH
T ss_conf             4055651200798


No 8  
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.15  E-value=70  Score=10.82  Aligned_cols=14  Identities=29%  Similarity=0.914  Sum_probs=0.0

Q ss_pred             HCCCCCCCCCHHHH
Q ss_conf             00155553201210
Q gi|254780204|r  154 YWHTDSASIGFRVP  167 (180)
Q Consensus       154 Ywhtdsasigfrvp  167 (180)
                      |||..+..+-..-|
T Consensus        18 YWHiptGttQwe~P   31 (33)
T d2ho2a1          18 YWHIPTGTTQWEPP   31 (33)
T ss_dssp             EEETTTTEEESSCC
T ss_pred             EEEECCCCCCCCCC
T ss_conf             88706885413689


No 9  
>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.75  E-value=81  Score=10.45  Aligned_cols=17  Identities=24%  Similarity=0.579  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCC-CHHCC
Q ss_conf             999898986052-00001
Q gi|254780204|r  140 QISEFAACLEHP-NRYWH  156 (180)
Q Consensus       140 q~sE~~ACL~~~-~RYwh  156 (180)
                      +..++|.+|..| +.||+
T Consensus       185 ~Le~Acehla~yLE~Yw~  202 (219)
T d1t0hb_         185 QLEDACEHLADYLEAYWK  202 (219)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             358899999999998875


No 10 
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.62  E-value=84  Score=10.35  Aligned_cols=8  Identities=50%  Similarity=0.675  Sum_probs=0.0

Q ss_pred             HHHHHCCC
Q ss_conf             89860520
Q gi|254780204|r  145 AACLEHPN  152 (180)
Q Consensus       145 ~ACL~~~~  152 (180)
                      .+||++||
T Consensus        26 ~~~L~~Y~   33 (63)
T d2di0a1          26 LACLEYYH   33 (63)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHC
T ss_conf             99999968


Done!