BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62] (180 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62] gi|254039881|gb|ACT56677.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62] Length = 180 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 180/180 (100%), Positives = 180/180 (100%) Query: 1 MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60 MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK Sbjct: 1 MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60 Query: 61 KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120 KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE Sbjct: 61 KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120 Query: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH Sbjct: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180 >gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62] gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62] Length = 252 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 91 LVVTAILAILLSIAIPTIEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEH 150 L V + ++ L+I +EE + +NDIKYE +Q I K KE E L + +E ACL Sbjct: 57 LWVIFVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQ 116 Query: 151 PNRY 154 +RY Sbjct: 117 YDRY 120 >gi|170100921|ref|XP_001881678.1| predicted protein [Laccaria bicolor S238N-H82] gi|164643637|gb|EDR07889.1| predicted protein [Laccaria bicolor S238N-H82] Length = 272 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 63 FQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIA------IPTIEEGMTMND 116 FQ L+F GL L AS ++L AC A +A+L+S +P +G+ Sbjct: 11 FQVALYFPGLRRTLHAQASPSVTLNDACHHFIAYVALLISHILLSSELLPLFSKGVVFTK 70 Query: 117 IKYERKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLL 171 + + + +E++ L + + + + + + S I R+PI +L Sbjct: 71 KRDQVTSGLQGHIQEREANAILIRTNLSCEIISPQSTHSNPPSGEINRRLPILVL 125 >gi|260948314|ref|XP_002618454.1| hypothetical protein CLUG_01913 [Clavispora lusitaniae ATCC 42720] gi|238848326|gb|EEQ37790.1| hypothetical protein CLUG_01913 [Clavispora lusitaniae ATCC 42720] Length = 482 Score = 36.2 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 19/33 (57%) Query: 35 RHTVAETPKIMWKAFKKSSGRWQWYKKSFQYLL 67 R V E K+ W FK+ GRW WY SF ++L Sbjct: 236 RMKVREKTKMDWSVFKRVLGRWHWYLFSFLWVL 268 >gi|225851059|ref|YP_002731293.1| general substrate transporter [Persephonella marina EX-H1] gi|225645698|gb|ACO03884.1| general substrate transporter [Persephonella marina EX-H1] Length = 425 Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 15/107 (14%) Query: 15 YGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKS-----------SGRWQWYK--- 60 +G IL F +++ + Y R + ETPK KK+ + +++K Sbjct: 184 WGWRILFFTGILLGFIGYYVRRNIEETPKFRELEEKKAVDKHPVRDLFKEAKLKFFKTFS 243 Query: 61 -KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIP 106 +FQ + F++ Y+ H + FV + L + I I+L+I IP Sbjct: 244 LSTFQAVGFYTIFVYIANHLSVFVKFPKATALTINTISMIILAILIP 290 >gi|163785523|ref|ZP_02180104.1| General substrate transporter [Hydrogenivirga sp. 128-5-R1-1] gi|159879209|gb|EDP73132.1| General substrate transporter [Hydrogenivirga sp. 128-5-R1-1] Length = 332 Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 15/114 (13%) Query: 10 KATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIM---WKAFKKSSGRWQWYKK----- 61 +A +G +L F VI+ V Y R + ETPK + ++ K S + + K Sbjct: 86 EALYSWGWRVLFFTGVILGFVGYYVRKHIDETPKFLELEYEELKAKSPLKELFGKGKSKL 145 Query: 62 -------SFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTI 108 +FQ + F++ Y H + FV S L + + I+L++ IP + Sbjct: 146 AKTFALSTFQAVGFYTIFVYTASHLSVFVKFPKSIALTINTVSMIILALLIPVM 199 >gi|152970613|ref|YP_001335722.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955462|gb|ABR77492.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1038 Score = 34.6 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 51 KSSGRWQWYKKSFQYLLFF--SGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTI 108 KSS W+ F L F +GL ++L + ++ + CL + A L+ L S +P Sbjct: 506 KSSVFSAWFNAHFHRLTSFYATGLGFVLKRTGRMMMIYAALCLALFAGLSTLPSSFLPDE 565 Query: 109 EEGMTMNDIKYERKQVISRKAKEKDLEE 136 ++G M+ I+ + R K D E Sbjct: 566 DQGYFMSSIQLPSDATMQRTLKVVDTFE 593 >gi|291412341|ref|XP_002722441.1| PREDICTED: Rho-associated coiled-coil containing protein kinase 2-like [Oryctolagus cuniculus] Length = 1461 Score = 33.8 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 99 ILLSIAIPTIEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEHPN 152 + L I T + +T ND+K + +QV S + EK L + ++E LE N Sbjct: 794 LTLKIEQETQKRCLTQNDLKMQTQQVSSLRVSEKQLRQENSHLTEVRVSLEKQN 847 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.324 0.137 0.404 Lambda K H 0.267 0.0431 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,839,546,093 Number of Sequences: 13984884 Number of extensions: 78258462 Number of successful extensions: 380157 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 380137 Number of HSP's gapped (non-prelim): 39 length of query: 180 length of database: 4,792,584,752 effective HSP length: 130 effective length of query: 50 effective length of database: 2,974,549,832 effective search space: 148727491600 effective search space used: 148727491600 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 76 (33.8 bits)