RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780204|ref|YP_003064617.1| hypothetical protein
CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
         (180 letters)



>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases.  This family
          consists of L-diaminobutyric acid transaminases. This
          general designation covers both 2.6.1.76
          (diaminobutyrate-2-oxoglutarate transaminase, which
          uses glutamate as the amino donor in DABA
          biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate
          transaminase, which uses alanine as the amino donor).
          Most members with known function are 2.6.1.76, and at
          least some annotations as 2.6.1.46 in current databases
          at time of model revision are incorrect. A distinct
          branch of this family contains examples of 2.6.1.76
          nearly all of which are involved in ectoine
          biosynthesis. A related enzyme is 4-aminobutyrate
          aminotransferase (EC 2.6.1.19), also called GABA
          transaminase. These enzymes all are pyridoxal
          phosphate-containing class III aminotransferase.
          Length = 442

 Score = 27.2 bits (60), Expect = 2.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 8/52 (15%)

Query: 20 LSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYKKSFQYLLFFSG 71
          LS  + + S V SY        P+ +  AF K+ G W    +  +YL F +G
Sbjct: 4  LSRQNEMESNVRSY--------PRKLPTAFAKAQGCWVTDVEGKEYLDFLAG 47


>gnl|CDD|184571 PRK14214, PRK14214, camphor resistance protein CrcB; Provisional.
          Length = 118

 Score = 26.0 bits (57), Expect = 5.5
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 16  GGLILSFL-SVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYKKSFQYLLFFSGLSY 74
           G  +L FL S  + PV+  F  T        +  FK  S   +W K +++ L  + G +Y
Sbjct: 45  GSFLLGFLVSSALGPVWQLFLGTGFMGGYTTFSTFKVESMELKW-KTNYRVLFSYLGCTY 103

Query: 75  LLFHSASFV 83
           +    A+F+
Sbjct: 104 VFGLIAAFL 112


>gnl|CDD|182560 PRK10574, PRK10574, putative major pilin subunit; Provisional.
          Length = 146

 Score = 26.1 bits (58), Expect = 5.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 91  LVVTAILAILLSIAIP 106
           +VV AI+AIL +I IP
Sbjct: 13  MVVIAIIAILSAIGIP 28


>gnl|CDD|163494 TIGR03782, Bac_Flav_CT_J, Bacteroides conjugative transposon TraJ
           protein.  Members of this protein family are designated
           TraM and are found in a proposed transfer region of a
           class of conjugative transposon found in the Bacteroides
           lineage. This family is related conjugation system
           proteins in the Proteobacteria, including TrbL of
           Agrobacterium Ti plasmids and VirB6.
          Length = 322

 Score = 25.4 bits (56), Expect = 7.4
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 60  KKSFQYLLFFSGLSYLLFHSASFVL-SLTSACLVVTAILA-ILLSIAI 105
           KKS +   +F  L  LLF +A+ V+ +L +  L+V +IL  I  +I++
Sbjct: 161 KKSVR--DWFRELLELLFQAAALVIDTLRTFFLIVLSILGPIAFAISV 206


>gnl|CDD|172366 PRK13839, PRK13839, conjugal transfer protein TrbG; Provisional.
          Length = 277

 Score = 25.1 bits (55), Expect = 9.4
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 82  FVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIK 118
             L+L + CLV   +    L  +     + MT N+ K
Sbjct: 2   TGLTLAAGCLVALVVPFGALLSSRALAAQSMTANEAK 38


>gnl|CDD|183089 PRK11337, PRK11337, DNA-binding transcriptional repressor RpiR;
           Provisional.
          Length = 292

 Score = 25.1 bits (55), Expect = 9.5
 Identities = 8/40 (20%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 96  ILAILLSIAIPTIEEGMTMNDIK-YERKQVISRKAKEKDL 134
           ++  + + ++  IEE  ++ D+  + R      +A+++DL
Sbjct: 106 VVNKVFNTSLQAIEETQSILDVDEFHRAARFFYQARQRDL 145


>gnl|CDD|184143 PRK13561, PRK13561, putative diguanylate cyclase; Provisional.
          Length = 651

 Score = 25.1 bits (55), Expect = 9.8
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 72  LSYLLFHSAS-----FVLSLTSACLVVTAILAILLSIAI 105
           L+YL+  + S     FV+S  S  + +  +L+++L++AI
Sbjct: 125 LAYLVLQADSFRMYKFVMSALSTLVTIYLLLSLILTVAI 163


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,842,711
Number of extensions: 167690
Number of successful extensions: 550
Number of sequences better than 10.0: 1
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 34
Length of query: 180
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 93
Effective length of database: 4,114,577
Effective search space: 382655661
Effective search space used: 382655661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)