RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780204|ref|YP_003064617.1| hypothetical protein
CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
         (180 letters)



>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
          Length = 158

 Score = 30.4 bits (67), Expect = 0.083
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 91  LVVTAILAILLSIAIP 106
           ++V AI+ IL ++A+P
Sbjct: 7   MIVIAIVGILAAVALP 22


>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
           {Adeno-associated virus, aav-2 [TaxId: 272636]}
          Length = 519

 Score = 24.9 bits (54), Expect = 3.9
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 21  SFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRW 56
            F S I    YS  + +V    +I W+  K++S RW
Sbjct: 449 KFASFITQ--YSTGQVSV----EIEWELQKENSKRW 478


>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 382

 Score = 24.2 bits (52), Expect = 6.3
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 58  WYKKSFQYLLFFSGLSYLLF-HSA 80
           WY KS Q+++   G   ++  HS 
Sbjct: 294 WYDKSLQFVVGRDGTCGVVCEHSP 317


>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 382

 Score = 24.2 bits (52), Expect = 7.7
 Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)

Query: 58  WYKKSFQYLLFFSGLSYLLF-HS 79
           W  KS+  + F +G+      H+
Sbjct: 296 WGDKSYNLISFANGIFGCCCDHA 318


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 660,324
Number of extensions: 27768
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 7
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.7 bits)