BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62] (180 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62] Length = 180 Score = 370 bits (950), Expect = e-105, Method: Compositional matrix adjust. Identities = 180/180 (100%), Positives = 180/180 (100%) Query: 1 MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60 MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK Sbjct: 1 MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60 Query: 61 KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120 KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE Sbjct: 61 KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120 Query: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH Sbjct: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180 >gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62] Length = 252 Score = 45.8 bits (107), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 101 LSIAIPT--IEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEHPNRY 154 LS+AI +EE + +NDIKYE +Q I K KE E L + +E ACL +RY Sbjct: 65 LSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 23.1 bits (48), Expect = 2.9, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 14/29 (48%) Query: 54 GRWQWYKKSFQYLLFFSGLSYLLFHSASF 82 G W Y SF Y+ S ++L + A F Sbjct: 46 GTWDVYDPSFSYITLRSPKNFLGYGGAIF 74 >gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 611 Score = 22.7 bits (47), Expect = 3.5, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%) Query: 22 FLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWY 59 F + ++ V+ HTVA I + WQW+ Sbjct: 41 FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWH 78 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 22.3 bits (46), Expect = 5.4, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Query: 71 GLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYERKQVISRKAK 130 G+S +L S ++ + C++ +++I LS+ + +I M IK+ RK+ + A Sbjct: 88 GMSIVL---RSLLMGFGAMCMMF--VISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYAD 142 Query: 131 EKDL 134 EK L Sbjct: 143 EKKL 146 >gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 22.3 bits (46), Expect = 5.6, Method: Compositional matrix adjust. Identities = 8/25 (32%), Positives = 14/25 (56%) Query: 49 FKKSSGRWQWYKKSFQYLLFFSGLS 73 F+K G W + + +L F SG++ Sbjct: 18 FEKGKGAWLFSENGIPFLDFASGIA 42 >gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 737 Score = 21.9 bits (45), Expect = 6.3, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Query: 97 LAILLSI-AIPTIEEGMTMNDI----KYERKQVISRKAKEKDLEESL 138 L I L + +PT EEGMT ++ ER +I K+ +E L Sbjct: 285 LGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEIL 331 >gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter asiaticus str. psy62] Length = 59 Score = 21.9 bits (45), Expect = 6.3, Method: Composition-based stats. Identities = 8/14 (57%), Positives = 9/14 (64%) Query: 141 ISEFAACLEHPNRY 154 I E+ CL PNRY Sbjct: 4 ILEYIRCLNDPNRY 17 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.325 0.136 0.410 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,523 Number of Sequences: 1233 Number of extensions: 4048 Number of successful extensions: 20 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 10 length of query: 180 length of database: 328,796 effective HSP length: 69 effective length of query: 111 effective length of database: 243,719 effective search space: 27052809 effective search space used: 27052809 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 35 (18.1 bits)