BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780204|ref|YP_003064617.1| hypothetical protein
CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
         (180 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 180

 Score =  370 bits (950), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60
           MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK
Sbjct: 1   MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60

Query: 61  KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120
           KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE
Sbjct: 61  KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120

Query: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180
           RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH
Sbjct: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180


>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 252

 Score = 45.8 bits (107), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 101 LSIAIPT--IEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEHPNRY 154
           LS+AI    +EE + +NDIKYE +Q I  K KE    E L + +E  ACL   +RY
Sbjct: 65  LSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 806

 Score = 23.1 bits (48), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 54 GRWQWYKKSFQYLLFFSGLSYLLFHSASF 82
          G W  Y  SF Y+   S  ++L +  A F
Sbjct: 46 GTWDVYDPSFSYITLRSPKNFLGYGGAIF 74


>gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 611

 Score = 22.7 bits (47), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 22 FLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWY 59
          F +  ++ V+    HTVA    I       +   WQW+
Sbjct: 41 FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWH 78


>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
           subunits [Candidatus Liberibacter asiaticus str. psy62]
          Length = 528

 Score = 22.3 bits (46), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 71  GLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYERKQVISRKAK 130
           G+S +L    S ++   + C++   +++I LS+ + +I     M  IK+ RK+  +  A 
Sbjct: 88  GMSIVL---RSLLMGFGAMCMMF--VISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYAD 142

Query: 131 EKDL 134
           EK L
Sbjct: 143 EKKL 146


>gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 392

 Score = 22.3 bits (46), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 49 FKKSSGRWQWYKKSFQYLLFFSGLS 73
          F+K  G W + +    +L F SG++
Sbjct: 18 FEKGKGAWLFSENGIPFLDFASGIA 42


>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 21.9 bits (45), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 97  LAILLSI-AIPTIEEGMTMNDI----KYERKQVISRKAKEKDLEESL 138
           L I L +  +PT EEGMT  ++      ER  +I    K+   +E L
Sbjct: 285 LGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEIL 331


>gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 59

 Score = 21.9 bits (45), Expect = 6.3,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 141 ISEFAACLEHPNRY 154
           I E+  CL  PNRY
Sbjct: 4   ILEYIRCLNDPNRY 17


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,523
Number of Sequences: 1233
Number of extensions: 4048
Number of successful extensions: 20
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 10
length of query: 180
length of database: 328,796
effective HSP length: 69
effective length of query: 111
effective length of database: 243,719
effective search space: 27052809
effective search space used: 27052809
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 35 (18.1 bits)