HHsearch alignment for GI: 254780205 and conserved domain: COG0109
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=370.45 Aligned_cols=282 Identities=22% Similarity=0.289 Sum_probs=248.3
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r 15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS 94 (310)
Q Consensus 15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~ 94 (310)
T Consensus 14 ~~~~~k~yl~Lt---KPrvi~L~~it~~~g~~lA~~-----~----~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~ 81 (304)
T COG0109 14 SRSTIKDYLQLT---KPRVISLLLITAFAGMLLAPR-----G----SINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDA 81 (304)
T ss_pred HHHHHHHHHHHH---CCEEEEHHHHHHHHHHHHCCC-----C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 677899999870---870552499999999997154-----6----5668999999999999998998986142540677
Q ss_pred CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH-HHHHCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf 34234310100123321011001344310003455-5444443210035654-443116-65555433200101001456
Q gi|254780205|r 95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL-LQFNPFVICVGFALLF-ISLLYP-FSKRFILCPQVVLGIGFAGG 171 (310)
Q Consensus 95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~-~~ln~~~~~l~~~~~~-~~~iYp-~~KR~t~~p~~~lG~~~~~~ 171 (310)
T Consensus 82 ~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~P 161 (304)
T COG0109 82 LMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMP 161 (304)
T ss_pred HCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf 53221589887774289999999999999999999999879999999999999876321010377633025401245566
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63011145754320246888887421003579988875310002572034665420204666533789999999999983
Q gi|254780205|r 172 VFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLL 251 (310)
Q Consensus 172 ~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~ 251 (310)
T Consensus 162 pliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~ 241 (304)
T COG0109 162 PLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALL 241 (304)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52305656088780599999999992667999999997887987499825413438999999999999999999999984
Q ss_pred CCC-HHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 533-7999-99999999999999980899979999998764599999999999998652
Q gi|254780205|r 252 TVN-FFAW-IGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD 308 (310)
Q Consensus 252 ~~~-~~~~-~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~ 308 (310)
T Consensus 242 g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~~lf~~l~id~~~~ 300 (304)
T COG0109 242 GYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLALLFVALLIDSLLL 300 (304)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00006999999999999999999996085379999999999999999999999999873