HHsearch alignment for GI: 254780205 and conserved domain: COG1575
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism].
Probab=99.80 E-value=1.1e-17 Score=126.75 Aligned_cols=282 Identities=15% Similarity=0.126 Sum_probs=186.0
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 054677899998630485315998999999999852123433445642169999999999999989999996413887--
Q gi|254780205|r 14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD-- 91 (310)
Q Consensus 14 ~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~d-- 91 (310)
T Consensus 3 ~~~~~~~~wl~~~r---P~Tl~aai~Pv~~G~a~A~~~~~-------~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG 72 (303)
T COG1575 3 QKTSKTQLWLELAR---PKTLPAAIAPVIVGTALAFWYGK-------SFNLLVALLALIAAILLQILVNLANDYFDYKKG 72 (303)
T ss_pred CCCHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56179999998648---64017889999999999999746-------538999999999999999999987762234227
Q ss_pred CCC--CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCC----CCCCCCCCCHHHHHHHHHHCCC-CCCCCCCC--CH
Q ss_conf 784--342343101001233210110013443100034555----4444432100356544431166-55554332--00
Q gi|254780205|r 92 IDS--QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLL----QFNPFVICVGFALLFISLLYPF-SKRFILCP--QV 162 (310)
Q Consensus 92 iD~--~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~----~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p--~~ 162 (310)
T Consensus 73 ~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi 152 (303)
T COG1575 73 TDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEI 152 (303)
T ss_pred CCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHH
T ss_conf 78898741246654313458888999999999999999999999974469999999999730101369967466778899
Q ss_pred HHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-HHHHHHHHHHHH
Q ss_conf 10100145663-0111457543202468888874210035799888753100025720346654202-046665337899
Q gi|254780205|r 163 VLGIGFAGGVF-VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQ-TKLWLFILYGIF 240 (310)
Q Consensus 163 ~lG~~~~~~~l-~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~-~~~~i~~~~~~~ 240 (310)
T Consensus 153 ~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a 232 (303)
T COG1575 153 FVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVA 232 (303)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 99999989999999999616410898999999999999999862133450178669601134625475899999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-HH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999835337999999999999999999808999-79----9999987645999999999999986
Q gi|254780205|r 241 VLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISC-SK----QCCSFFHSAGVVGILILICLIISLF 306 (310)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~-~~----~~~k~Fk~n~~~g~ii~~~iild~l 306 (310)
T Consensus 233 ~l~~~~~~i~~~~~~~~-ll~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~l 302 (303)
T COG1575 233 YLAIVIFVILGLFPVWG-LLFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILLSQL 302 (303)
T ss_pred HHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999996221799-99999999999999999861683477799999999999999999999999963