HHsearch alignment for GI: 254780205 and conserved domain: PRK05951
>PRK05951 ubiA prenyltransferase; Reviewed.
Probab=99.89 E-value=6.6e-22 Score=152.51 Aligned_cols=278 Identities=14% Similarity=0.124 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67789999863048531599899999999985212343344564216999999999999998999999641388778434
Q gi|254780205|r 17 SAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQV 96 (310)
Q Consensus 17 ~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~ 96 (310)
T Consensus 2 ~~~k~~~~a~R---P~tl~asi~pv~lG~a~A~~~~g~---f----~~~~~ll~ll~~~l~q~~~Nl~NDY~D~~~G~D~ 71 (296)
T PRK05951 2 TRDKEFFIQTR---PWSFVMTIISTSFGYSYGFYLIGS---F----DPLLSWAILLGCVLLHASANVLNDYFDYVLGIDT 71 (296)
T ss_pred CCHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHCCC---C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 50889999967---037699999999999999997698---7----5999999999999999999985618888457756
Q ss_pred -CCCC--CHHHHCCCCCHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHHHHCC---C-CCCCCCCCCHHHH
Q ss_conf -2343--10100123321011001344310003455----5444443210035654443116---6-5555433200101
Q gi|254780205|r 97 -LRTR--SRPLPSGQCTRFQALVFAVLQFLISFVLL----LQFNPFVICVGFALLFISLLYP---F-SKRFILCPQVVLG 165 (310)
Q Consensus 97 -~RT~--~RPl~sG~is~~~A~~~~~~l~~l~~~~~----~~ln~~~~~l~~~~~~~~~iYp---~-~KR~t~~p~~~lG 165 (310)
T Consensus 72 ~~~~~~~~~~i~~g~ls~~~v~~~~~~~~~~a~~~G~~L~~~~~~~~l~lg~~g~~~~~~YTggP~~l~y-~gLGel~v~ 150 (296)
T PRK05951 72 RETTGYRPHPIIAGIMSLGNVRVLGIALGCIALQLGGALFLDRRPLAVLLALLGVFLLYCYMGPPFNLKY-RALGELLVF 150 (296)
T ss_pred CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHH
T ss_conf 7667888536883797899999999999999999999999985599999999999999998179976656-661079999
Q ss_pred HHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 00145-66301114575432024688888742100357998887531000257203466542020466653378999999
Q gi|254780205|r 166 IGFAG-GVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCF 244 (310)
Q Consensus 166 ~~~~~-~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~ 244 (310)
T Consensus 151 i~fG~l~v~g~~y~qtg~~~~~~~l~s~p~gll~~~IL~~Nn~rD~e~D~~~Gk~Tl~v~lG~~~a~~~~~~l~~~~y~~ 230 (296)
T PRK05951 151 IAWGHLMVLGLIYVWTGNISSPNVLAGVPLGLLVAAVLLANNLRDIEDDERLGAPTLAVIFGRKSAVALYAFALLSPYLI 230 (296)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 99899999999999918776999999999999999999987862215499769976487867575999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998353379999999999---999999998089997999999876459999999999999865
Q gi|254780205|r 245 MVAFCLLTVNFFAWIGLLIAL---FLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFL 307 (310)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~---~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL 307 (310)
T Consensus 231 ~~~~~~~~~~p~~~ll~lltlPla~~l~~~~~~~~~~~--~~~~T~~l~~~fg~l~~~g~lls~l~ 294 (296)
T PRK05951 231 LVILVIAILLPLISLWALLTLPVAYALCLWQSRKFPHD--ADPATAQIFMVFGYLYILGTLLSKLV 294 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986605999999999999999999997525455--53899999999999999999999872