HHsearch alignment for GI: 254780205 and conserved domain: PRK12874
>PRK12874 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=485.25 Aligned_cols=287 Identities=24% Similarity=0.386 Sum_probs=263.4
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r 15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS 94 (310)
Q Consensus 15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~ 94 (310)
T Consensus 4 ~~~ki~~~~~lik~~htiFalpf---a~~~~~la~~~~~~~~~~----~~~~l~~~~~a~v~aRsag~~iN~~~Dr~iD~ 76 (291)
T PRK12874 4 FTHKLKDISELVVFKHSIFSLPF---IFIAMIVASKQKNGTGWF----GFKLLILGILAAVSARNFAMGFNRLMDRDIDK 76 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999987008988999---999999986327887875----59999999999999999998998463427535
Q ss_pred CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 34234310100123321011001344310003455544444321003565444311665555433200101001456630
Q gi|254780205|r 95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFV 174 (310)
Q Consensus 95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~ 174 (310)
T Consensus 77 ~~~RT~~Rpl~sG~is~~~a~~~~~~~~~~~~~~~~~lN~l~~~ls~~~l~~~~~Yp~~KRft~~~~~~LG~~~~~~pl~ 156 (291)
T PRK12874 77 DNPRTANRPSVDGRISRKGMVIFIVINALIFIVVSYFINTLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIA 156 (291)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 78435787787677799999999999999999999998699999999999999999889836537099999998889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHCC
Q ss_conf 11145754320246888887421003579988875310002572034665420204666-53378999999999998353
Q gi|254780205|r 175 GWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL-FILYGIFVLCFMVAFCLLTV 253 (310)
Q Consensus 175 g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i-~~~~~~~~~~~~~~~~~~~~ 253 (310)
T Consensus 157 ~w~Av~g~~~~~~~~L~~~~~~W~~gfD~iYA~qD~e~D~~~Gl~S~p~~fG~~~~l~i~~~~h~~~~i~~~~~g~~~~l 236 (291)
T PRK12874 157 GSVAVSGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWEAHL 236 (291)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99997499989999999999999999999999775864998699765688680527999999999999999999999751
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3799999999999999999980899979999998764599999999999998652
Q gi|254780205|r 254 NFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD 308 (310)
Q Consensus 254 ~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~ 308 (310)
T Consensus 237 ~~~y~i~~~i~~~ll~yqh~lv~~d~~~~~~afF~~N~~iglilf~~illd~l~~ 291 (291)
T PRK12874 237 GFFAYLGVIVSALILLYEHYLVRKDFKKIDRAFFTLNGYLGIVFFIFIVLDVLFK 291 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6999999999999999999996288967999999972799999999999999739