HHsearch alignment for GI: 254780205 and conserved domain: PRK12876
>PRK12876 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=440.49 Aligned_cols=287 Identities=18% Similarity=0.172 Sum_probs=234.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 778999986304853159989999-9999985212343344564216999999999999998999999641388778434
Q gi|254780205|r 18 AIAPYVYLARWHSSTGWHLAVLPC-LWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQV 96 (310)
Q Consensus 18 ~i~~Y~~L~R~~kp~g~~ll~~p~-~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~ 96 (310)
T Consensus 2 k~k~~~~likf~Hti----FalPFa~~~~~~a~~~~~~~~~~~~~~~w~~l~~~~~a~v~aRsagm~~Nr~~Dr~iD~~n 77 (299)
T PRK12876 2 RIKYFQQLINCKYAL----FSALFLSASTVFALSLPEISQNLFSKEGFKIIVLGGSAFFCARTVGIIVNQIIDRAIDKKN 77 (299)
T ss_pred CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 699999999885699----9899999999999627655555444324999999999999997898599986241547899
Q ss_pred CCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 23431010012332101100134431000345554444432100356544431166555543320010100145663011
Q gi|254780205|r 97 LRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGW 176 (310)
Q Consensus 97 ~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g~ 176 (310)
T Consensus 78 pRT~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~lN~l~~~Ls~~~l~~~~~Yp~~KRft~~~h~~LG~~~~~a~~~~~ 157 (299)
T PRK12876 78 PRTSKRVLPAKLLSINFSWLLLLLCSFLFLSLCWFLNPLCFSLAVLSTLLMIVYPYTKRVTFLCHWILGLVYYLAILMNF 157 (299)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 77789988788879989999999999999999999729999999999999999787776121179999999999999999
Q ss_pred CCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 14575432-----0246888887421003579988875310002572034665420204666-53378999999999998
Q gi|254780205|r 177 GALHASFS-----WPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL-FILYGIFVLCFMVAFCL 250 (310)
Q Consensus 177 ~av~g~~~-----~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i-~~~~~~~~~~~~~~~~~ 250 (310)
T Consensus 158 ~Av~~~~~~~~l~~~~~l~~~~~~~wvagfD~iYA~qD~e~D~k~Gl~S~p~~fG~~~al~ia~~~h~~~~l~~~~~g~~ 237 (299)
T PRK12876 158 FAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDREEGLFSIPARFGEKKAIRIASVNLIVSALAYILSGYF 237 (299)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99818751179999999999999999975357887167754998498633898696008999999999999999999999
Q ss_pred HCCCHHHHHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 353379999999--99999-99999980899979999998764599999999999998652
Q gi|254780205|r 251 LTVNFFAWIGLL--IALFL-TIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD 308 (310)
Q Consensus 251 ~~~~~~~~~~~l--~~~~~-l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~ 308 (310)
T Consensus 238 ~~~~~~~y~~~l~~~~~~l~~~~h~~~~~~~~s~~~~aFF~~N~~igli~Fi~ii~~~~l~ 298 (299)
T PRK12876 238 VSNKKEFYLCSLIPLVVILKTIKHYSLIDKKKSELEQKFFLGNIYLALSFFVNMIGLFLLS 298 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_conf 9854899999999999999999999972899505889999850899999999999999706