HHsearch alignment for GI: 254780205 and conserved domain: PRK12878
>PRK12878 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=607.88 Aligned_cols=296 Identities=47% Similarity=0.830 Sum_probs=282.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01355541054677899998630485315998999999999852123433445642169999999999999989999996
Q gi|254780205|r 6 NFKWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWN 85 (310)
Q Consensus 6 ~~~~~~~~~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~N 85 (310)
T Consensus 18 ~~~wv-~~~lP~~~~pY~~L~RldkPiG~~LL~~P~~w~l~laa~~~~~~----~~~~~~~l~lf~~G~~~mRsAGCviN 92 (314)
T PRK12878 18 SGNWV-DRRLPPWLRPYARLARWDRPIGWWLLLWPCWWSAALAAGAAADL----GLPLLWHLFLFFIGAIAMRGAGCTWN 92 (314)
T ss_pred CCCCH-HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 89744-76288757899999843661989999999999999986156766----66279999999999999931201999
Q ss_pred HHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 41388778434234310100123321011001344310003455544444321003565444311665555433200101
Q gi|254780205|r 86 DLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLG 165 (310)
Q Consensus 86 d~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG 165 (310)
T Consensus 93 Di~DrdiD~~v~RTk~RPLasG~iS~~~A~~f~~~l~~~~~~ll~~ln~~~~~l~~~~l~lv~iYP~~KR~t~~PQ~~LG 172 (314)
T PRK12878 93 DIVDRDLDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNRFAIALGIASLAIVAAYPFMKRITWWPQFFLG 172 (314)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 88986004256445678876677799999999999999999999998599999999999999999999862103799999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 00145663011145754320246888887421003579988875310002572034665420204666533789999999
Q gi|254780205|r 166 IGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFM 245 (310)
Q Consensus 166 ~~~~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~ 245 (310)
T Consensus 173 l~f~~g~l~gw~Av~g~l~~~~~lL~~a~~~Wt~~yDtiYA~qD~~DD~k~GVkStav~fG~~~~~~i~~~~~l~~~ll~ 252 (314)
T PRK12878 173 LAFSWGALMGWAATFGSLSWAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGEHTKTWLVLLYGLAVVLMG 252 (314)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99730588899971688766999999999999999999997314765987699731578543729999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999835337999999999999999999808999799999987645999999999999986
Q gi|254780205|r 246 VAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF 306 (310)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~l 306 (310)
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~Fk~N~~~G~iif~gi~~~~L 313 (314)
T PRK12878 253 AAFALARAPLLALLGLLAAAAHLAWQIVRLDIDDPAQCLRLFKSNRDAGLLIFAGLVVGGL 313 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999985229999999999999999999817998899999999819999999999998543