HHsearch alignment for GI: 254780205 and conserved domain: PRK13106

>PRK13106 ubiA prenyltransferase; Reviewed.
Probab=100.00  E-value=0  Score=501.63  Aligned_cols=278  Identities=20%  Similarity=0.199  Sum_probs=256.3

Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             46778999986304853159989999999998521234334456421699999999999999899999964138877843
Q gi|254780205|r   16 GSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQ   95 (310)
Q Consensus        16 ~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~   95 (310)
T Consensus        12 ~~K~~~y~~l~r~~~~if~L---p~a~~~~~lA~~g~p---------~~~~l~~~~lg~~~~Rsagc~iNdi~Dr~iD~~   79 (299)
T PRK13106         12 RSKLYIYLRFLRIEQTFFSL---PMAYMGAFLAIRGIP---------PIRTLILIFLALFFLRTAGMTNDNLADREIDAK   79 (299)
T ss_pred             HHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             77999999999982499999---999999999728999---------899999999999999999989998605174468


Q ss_pred             CCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             42343101001233210110013443100034555444443210035654443116655554332001010014566301
Q gi|254780205|r   96 VLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVG  175 (310)
Q Consensus        96 ~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g  175 (310)
T Consensus        80 v~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~ls~~~~~~~~~YP~~KRft~~pq~~LG~~~~~~~~~~  159 (299)
T PRK13106         80 NPRTRTRPLVTGAITVREAWLLIAAGLIGYFASAYLLNRYALLLSPIVALIAMSYPYMKRYTAFANYHLASVQGLAVFSG  159 (299)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             96668888766887999999999999999999999974999999999999999999988730133699999999789999


Q ss_pred             CCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf             11457543--------2024688888742100357998887531000257203466542020466653378999999999
Q gi|254780205|r  176 WGALHASF--------SWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVA  247 (310)
Q Consensus       176 ~~av~g~~--------~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~  247 (310)
T Consensus       160 ~~a~~g~~~~~~~~~~~~~~~ll~~a~~~W~~~yDtiYA~qD~~dD~~~Gi~S~a~~fG~~~~~~~~~~~~~~~~ll~~~  239 (299)
T PRK13106        160 AVASLGLEATSLTQVLRSVPWLFVIATILWAVGFDLYNHIPDADFDRKMGLHSFAVLLGNKALAFAGLNQLASVLLAIAG  239 (299)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99985320012354667899999999999999985988737822327659870288885779999999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9983533799999999999999999980899979999998764599999999999998652
Q gi|254780205|r  248 FCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       248 ~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
T Consensus       240 g~~~~lg~~~~~~~~i~~~~~~yq~~l~~---~~d~~~aF~~N~~iGlilf~gi~ld~llg  297 (299)
T PRK13106        240 DIAYGLGPIAYAATVLHGLIMAYAYYLAS---KGNFGRAFYYNIYSSIVLGLGIIIDVLLG  297 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf             99986279999999999999999999589---53099999861899999999999999818