HHsearch alignment for GI: 254780205 and conserved domain: PRK13591
>PRK13591 ubiA prenyltransferase; Provisional.
Probab=98.30 E-value=4.3e-07 Score=62.35 Aligned_cols=153 Identities=23% Similarity=0.302 Sum_probs=74.4
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CC--CC---
Q ss_conf 9964138877843423431010012332101100134431000345554444432100356544431166-55--55---
Q gi|254780205|r 83 TWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF-SK--RF--- 156 (310)
Q Consensus 83 ~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~K--R~--- 156 (310)
T Consensus 76 tLdRald~eEDaiNr--~El~g~nk~i----gl~~sl~afl~g~~il~~~Gi--l~~~f~Pli~GylYSkgikigk~~~K 147 (304)
T PRK13591 76 TLDRALDSEEDAVNR--KELIGSNKKI----GLAVSLLAFLIGTYILAREGM--LLLAFLPLITGYLYSKGIKIGKFALK 147 (304)
T ss_pred EECCCCCCHHHCCCC--HHHCCCCCHH----HHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHEEEEECCCCEEEEEEEE
T ss_conf 721122760210451--7650753102----499999999999999885632--75446556311022146123101588
Q ss_pred ----CCCCCHHHHHHHHHHHHHCCCCCC--CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-C
Q ss_conf ----433200101001456630111457--54-320246888887421003579988875310002572034665420-2
Q gi|254780205|r 157 ----ILCPQVVLGIGFAGGVFVGWGALH--AS-FSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSY-Q 228 (310)
Q Consensus 157 ----t~~p~~~lG~~~~~~~l~g~~av~--g~-~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~-~ 228 (310)
T Consensus 148 LKgg~gvKniIVg~tW--g~~iA~l~~~~~~s~~~v~iVf~FFg~kl--FINS~V~DfkDVkGD~~AGIkTLP~~LG~~~ 223 (304)
T PRK13591 148 LKGGLGVKNIVVGITW--GAFIAGLAGSYCGSMLPVVLVFLFFGVKL--FINSAIYDFKDIKGDTLAGIKTLPVSLGEQK 223 (304)
T ss_pred ECCCCCCEEEEEEEEC--CCHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHHHHHCCCHHCCCCHHCCCCCCCHHHCCHH
T ss_conf 5277762048998751--32266653420256414578899998999--8752310021036644307000762316325
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 0466653378999999999
Q gi|254780205|r 229 TKLWLFILYGIFVLCFMVA 247 (310)
Q Consensus 229 ~~~~i~~~~~~~~~~~~~~ 247 (310)
T Consensus 224 Tr~~L~~ihl~sh~vl~~a 242 (304)
T PRK13591 224 TRNLLLGIHLFSHLVLGIA 242 (304)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 6649999999999999999