HHsearch alignment for GI: 254780205 and conserved domain: PRK13595
>PRK13595 ubiA prenyltransferase; Provisional.
Probab=99.78 E-value=1.6e-18 Score=131.93 Aligned_cols=273 Identities=19% Similarity=0.140 Sum_probs=159.4
Q ss_pred HHHCCCHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf 5410546778-99998630485315998999999999852123433445642169999999999--99998999999641
Q gi|254780205|r 11 RDCIMGSAIA-PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVG--AIVTRGAACTWNDL 87 (310)
Q Consensus 11 ~~~~~~~~i~-~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G--~~~~r~ag~~~Nd~ 87 (310)
T Consensus 8 ~~~~~~~~~~~~Lr~L~~~SRP~~WinTa~p~~~g~~l~g~~~~------~--~~v~l~i~fl~PyNl~mYG----INDv 75 (298)
T PRK13595 8 MMRIAPSGIGLPLRRLLLISRPVLWINTIGSGVVGVWLTGHLFT------L--GVLPLLLWLTLPFNLLIYG----LNDI 75 (298)
T ss_pred HHHCCCCCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHCCCCC------H--HHHHHHHHHHHHHHHHHHC----CCHH
T ss_conf 87328864517899999845742333005689999999725477------8--9999999999887888744----4212
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCHHHC--CCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCH
Q ss_conf 388778434234310100123321011--00134431000345--554444432100356544431166-5555433200
Q gi|254780205|r 88 VDHDIDSQVLRTRSRPLPSGQCTRFQA--LVFAVLQFLISFVL--LLQFNPFVICVGFALLFISLLYPF-SKRFILCPQV 162 (310)
Q Consensus 88 ~D~diD~~~~RT~~RPl~sG~is~~~A--~~~~~~l~~l~~~~--~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~ 162 (310)
T Consensus 76 fD~esD~~NPRKGg~E--Ga~l~~~~~r~~l~a~~~~~~pf~~~l~~~~~~~~~~~L~~~~~~~~aYSappLRFKerP~L 153 (298)
T PRK13595 76 ADQETDAANPRKGSWE--GARIRPGEVRPIARAVLLLNAPFLLYFALVLPPAANAALLLYAAVFVGYSLPPLRFKARPFL 153 (298)
T ss_pred HHHHHCCCCCCCCCCC--CCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 2212014588756745--50344023661238999970589999998468889999999999998404885345666552
Q ss_pred HHHH---HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HCHHHHHHHHHH
Q ss_conf 1010---014566301114575432024688888742100357998887531000257203466542-020466653378
Q gi|254780205|r 163 VLGI---GFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFS-YQTKLWLFILYG 238 (310)
Q Consensus 163 ~lG~---~~~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G-~~~~~~i~~~~~ 238 (310)
T Consensus 154 -DS~sn~~y~~p~~~~~lalg~~---~~~~al~a~~lW~ma~HaF~AvqDI~~DR~AGI~T~AT~lGaRgT~~~~~~~~l 229 (298)
T PRK13595 154 -DSLSNAAYALPLVLVPLALGAP---PVWPALLGLMAWSVAKHAFDAVQDIVEDREAGIRTVAVRLGVRGTALWSGAWWI 229 (298)
T ss_pred -CHHCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf -0120045767899999980588---428999999999999877344566740033385123435430589999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999983533799999999999999999980899979999---9987-645999999999999986521
Q gi|254780205|r 239 IFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCC---SFFH-SAGVVGILILICLIISLFLDQ 309 (310)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~---k~Fk-~n~~~g~ii~~~iild~lL~~ 309 (310)
T Consensus 230 lA~~l~~~~~~p-----~a~~~~~~~~~~~~~~---~~d~~~e~A~r~wr~fla~n~v~G~v~~~lLi~~l~~g~ 296 (298)
T PRK13595 230 LAGALFAPVSRP-----VAAALWAIAGGLALAL---LRRPRPETGHRLYRLSIAFPYIAGTVAGVLLVYALARGG 296 (298)
T ss_pred HHHHHHHCCCHH-----HHHHHHHHHHHHHHHH---HCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999998365227-----8999999999999999---728986777413413453777999999999999998157