HHsearch alignment for GI: 254780205 and conserved domain: TIGR01474
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase; InterPro: IPR006370 These sequences are a family of integral membrane proteins that condense para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in Escherichia coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterised members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterised members IPR006371 from INTERPRO .; GO: 0004659 prenyltransferase activity, 0009058 biosynthetic process, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=643.45 Aligned_cols=284 Identities=39% Similarity=0.680 Sum_probs=274.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 78999986304853159989999999998521234334456421699999999999999899999964138877843423
Q gi|254780205|r 19 IAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLR 98 (310)
Q Consensus 19 i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~R 98 (310)
T Consensus 1 l~~Y~~L~R~DkP~G~lLLl~P~~W~~~LAA~~~~~----s~~p~~~~L~~F~~G~~lMRgAGCviND~~DR~~D~~VeR 76 (291)
T TIGR01474 1 LLPYAKLMRADKPIGTLLLLLPCLWSILLAAQAYDA----SGLPPLLLLALFTVGAILMRGAGCVINDIVDRDFDKQVER 76 (291)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
T ss_conf 938999972557699999999999999998652067----8886089999999999998640434330462400433400
Q ss_pred CCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 43101001233210110013443100034555444443210035654443116655554332001010014566301114
Q gi|254780205|r 99 TRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGA 178 (310)
Q Consensus 99 T~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g~~a 178 (310)
T Consensus 77 Tk~RPLasG~vs~~~A~~~~~~~~l~~l~~Ll~LN~~ti~Lgv~sL~lv~~YP~~KR~t~~PQ~~LGlaF~wGalmg~~A 156 (291)
T TIGR01474 77 TKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNSLTILLGVASLALVAIYPFMKRITYWPQLVLGLAFGWGALMGWAA 156 (291)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 00378746631189999999999999999998755799999899999999801132015157999999984358877878
Q ss_pred CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHC--C
Q ss_conf 575--432024688888742100357998887531000257203466542020-46665337899999999999835--3
Q gi|254780205|r 179 LHA--SFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQT-KLWLFILYGIFVLCFMVAFCLLT--V 253 (310)
Q Consensus 179 v~g--~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~-~~~i~~~~~~~~~~~~~~~~~~~--~ 253 (310)
T Consensus 157 ~~G~~~l~~~a~~LY~a~i~Wt~~YDTiYA~~Dk~DD~kiGvkStA~~FG~~~Pk~~l~~l~~~~i~lL~~aG~~~~ll~ 236 (291)
T TIGR01474 157 VQGVMDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDLKIGVKSTALRFGDNTPKPWLGGLYALMILLLALAGLIAGLLL 236 (291)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61667876889999999999999986887532706467714289988740478178999999999999999999988875
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3799999999999999999980899979999--9987645999999999999986
Q gi|254780205|r 254 NFFAWIGLLIALFLTIKRIIALDISCSKQCC--SFFHSAGVVGILILICLIISLF 306 (310)
Q Consensus 254 ~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~--k~Fk~n~~~g~ii~~~iild~l 306 (310)
T Consensus 237 ~~~yy~~l~~a~~~l~~Qi~~l~~~~P~~C~yG~~F~~N~~vG~~~f~gi~l~~l 291 (291)
T TIGR01474 237 GPVYYLGLAAAALLLIRQIATLDIRDPENCLYGKLFKANNYVGLLLFAGIVLGLL 291 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 4899999999999999998888516781016877865020899999999998429