>TIGR01475 ubiA_other 4-hydroxybenzoate polyprenyltransferase, putative; InterPro: IPR006371 A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in IPR006370 from INTERPRO. Protoheme IX farnesyltransferase (heme O synthase) (IPR006369 from INTERPRO) is more distantly related. Because no species appears to have both this protein and a member of IPR006370 from INTERPRO, it is likely that this family of sequences represent 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, and the Chlamydias..

Probab=100.00 E-value=0 Score=420.54 Aligned_cols=287 Identities=24% Similarity=0.361 Sum_probs=254.9 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 77899998630485315998999999999852123433445642169999999999999989999996413887784342 Q gi|254780205|r 18 AIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVL 97 (310) Q Consensus 18 ~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~ 97 (310) T Consensus 1 k~~~il~l~k~ehT~FaL-PF--a~~g~lla~~~~N~t~Plfs~~~~~~l~Li~~A~~~ARt~aM~~Nr~~D~~ID~~NP 77 (301) T TIGR01475 1 KIKDILELIKFEHTLFAL-PF--AYAGALLAAKLANDTAPLFSLPSLKTLILILVALVSARTAAMAFNRIIDEEIDAKNP 77 (301) T ss_pred CHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC T ss_conf 956898899999998569-99--999999970288986320466549999999999999999975652230631234686 Q ss_pred CCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 34310100123321011001344310003455544444321003565444311665555433200101001456630111 Q gi|254780205|r 98 RTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWG 177 (310) Q Consensus 98 RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g~~ 177 (310) T Consensus 78 Rtk~R~lv~G~is~~ea~~~~~~~~~lF~~~~~f~N~laf~Lsp~v~l~~~~YP~~KRfT~l~H~~LG~~~glA~~~G~~ 157 (301) T TIGR01475 78 RTKNRPLVSGKISKKEARTLIILSLALFLIASYFLNPLAFILSPVVLLVLIIYPYLKRFTALCHLVLGSVLGLAPLAGWV 157 (301) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97889787764339999999999999999999999899999869999999970227776486779999999999877266 Q ss_pred CCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHH Q ss_conf 4575432--------024688888742100357998887531000257203466542-0204666533789999999999 Q gi|254780205|r 178 ALHASFS--------WPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFS-YQTKLWLFILYGIFVLCFMVAF 248 (310) Q Consensus 178 av~g~~~--------~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G-~~~~~~i~~~~~~~~~~~~~~~ 248 (310) T Consensus 158 av~~~~~~sl~~~~~~~a~~l~~~~~fW~aGFD~iY~~qD~eFD~~~gL~Sipa~fG~~~aL~ia~~~h~~~~~~~ll~~ 237 (301) T TIGR01475 158 AVIGEISISLDELLLLVAVLLGIGVVFWVAGFDVIYAIQDYEFDKKNGLKSIPARFGVKAALKIASLSHVITFVLLLLLG 237 (301) T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 50377310166599999999999999999999998752483544450865421330558999999999999999999999 Q ss_pred HHHCC---CHHHHHHHHHHHHHHHHHHHHHCC-CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98353---379999999999999999998089-997999-999876459999999999999865 Q gi|254780205|r 249 CLLTV---NFFAWIGLLIALFLTIKRIIALDI-SCSKQC-CSFFHSAGVVGILILICLIISLFL 307 (310) Q Consensus 249 ~~~~~---~~~~~~~~l~~~~~l~~~i~~~~~-~~~~~~-~k~Fk~n~~~g~ii~~~iild~lL 307 (310) T Consensus 238 ~~~~~~~lg~~~~l~~~~~~~~l~y~H~i~~~G~~~~~~~~~FF~~N~~~si~~l~~~~~d~~~ 301 (301) T TIGR01475 238 FYVGEKALGYIALLALLLIGLILVYEHSIVDPGKDLSKIQRAFFTVNGFLSIIFLIGVIIDVLL 301 (301) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9970268999999999999999998887743785676898998769899999999999998729

HHsearch alignment for GI: 254780205 and conserved domain: TIGR01475