Query         gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 310
No_of_seqs    167 out of 2519
Neff          7.3 
Searched_HMMs 39220
Date          Mon May 23 13:03:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780205.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01474 ubiA_proteo 4-hydrox 100.0       0       0  643.5  17.6  284   19-306     1-291 (291)
  2 PRK12878 ubiA prenyltransferas 100.0       0       0  607.9  19.5  296    6-306    18-313 (314)
  3 PRK12894 consensus             100.0       0       0  566.8  19.5  280   18-306     3-282 (282)
  4 PRK12870 ubiA prenyltransferas 100.0       0       0  560.3  20.1  287   12-307     2-289 (289)
  5 PRK12848 ubiA 4-hydroxybenzoat 100.0       0       0  555.5  20.1  282   15-305     1-282 (282)
  6 PRK12877 consensus             100.0       0       0  552.5  19.8  283   17-307     1-283 (283)
  7 PRK12847 ubiA prenyltransferas 100.0       0       0  547.8  20.2  283   14-304     2-284 (284)
  8 PRK12873 ubiA prenyltransferas 100.0       0       0  548.9  18.8  284   13-305     4-295 (297)
  9 PRK12888 ubiA prenyltransferas 100.0       0       0  531.2  20.6  286   14-308    22-309 (313)
 10 KOG1381 consensus              100.0       0       0  520.2   7.6  290   14-310    59-349 (353)
 11 PRK13106 ubiA prenyltransferas 100.0       0       0  501.6  18.5  278   16-308    12-297 (299)
 12 PRK12886 ubiA prenyltransferas 100.0       0       0  486.8  20.6  284   15-310     4-289 (291)
 13 PRK12895 ubiA prenyltransferas 100.0       0       0  487.3  19.9  279   18-309     2-284 (286)
 14 PRK12874 ubiA prenyltransferas 100.0       0       0  485.2  20.2  287   15-308     4-291 (291)
 15 PRK12876 ubiA prenyltransferas 100.0       0       0  440.5  18.9  287   18-308     2-298 (299)
 16 TIGR01475 ubiA_other 4-hydroxy 100.0       0       0  420.5  18.1  287   18-307     1-301 (301)
 17 PRK12869 ubiA prenyltransferas 100.0       0       0  420.0  18.5  273   19-304     1-278 (278)
 18 PRK04375 protoheme IX farnesyl 100.0       0       0  413.4  20.4  285   13-309    10-300 (303)
 19 PRK12871 ubiA prenyltransferas 100.0       0       0  416.3  16.2  280   15-306     1-296 (297)
 20 COG0382 UbiA 4-hydroxybenzoate 100.0       0       0  396.8  20.1  284   13-305     4-288 (289)
 21 TIGR01473 cyoE_ctaB protoheme  100.0       0       0  393.8  18.3  280   20-305     1-297 (297)
 22 PRK13362 protoheme IX farnesyl 100.0       0       0  378.3  19.4  285   12-308     6-297 (306)
 23 COG0109 CyoE Polyprenyltransfe 100.0       0       0  370.4  18.8  282   15-308    14-300 (304)
 24 PRK12884 ubiA prenyltransferas 100.0       0       0  366.2  17.9  277   15-305     1-280 (281)
 25 PRK12882 ubiA prenyltransferas 100.0       0       0  347.0  18.3  269   18-300     3-274 (276)
 26 PRK09573 (S)-2,3-di-O-geranylg 100.0       0       0  329.5  16.7  275   18-307     2-279 (280)
 27 PRK13593 consensus             100.0       0       0  323.2  18.5  275   14-306     3-279 (283)
 28 PRK12883 ubiA prenyltransferas 100.0       0       0  317.1  18.6  270   18-306     2-273 (275)
 29 PRK13594 consensus             100.0 2.7E-40   7E-45  264.4  16.4  270   18-306     2-277 (278)
 30 PRK07566 bacteriochlorophyll/c 100.0 6.9E-40 1.8E-44  261.9  12.9  261   16-288    18-285 (308)
 31 KOG1380 consensus              100.0 2.6E-38 6.7E-43  252.3   5.8  278   17-308    92-373 (409)
 32 pfam01040 UbiA UbiA prenyltran 100.0 1.8E-35 4.7E-40  235.0  16.3  245   37-290     4-250 (258)
 33 TIGR01476 chlor_syn_BchG bacte 100.0 1.3E-33 3.4E-38  223.7  13.5  259   20-289     1-277 (295)
 34 PRK12392 bacteriochlorophyll c 100.0   2E-34   5E-39  228.7   6.4  253   13-275     6-271 (331)
 35 PRK12887 ubiA tocopherol phyty 100.0 1.7E-27 4.3E-32  186.5  13.0  265   15-287    10-289 (309)
 36 PRK06080 1,4-dihydroxy-2-napht  99.9 3.5E-25   9E-30  172.4  19.3  280   15-305     5-299 (300)
 37 TIGR02056 ChlG chlorophyll syn  99.9 5.4E-25 1.4E-29  171.3   8.9  263   17-290    14-288 (306)
 38 PRK05951 ubiA prenyltransferas  99.9 6.6E-22 1.7E-26  152.5  16.1  278   17-307     2-294 (296)
 39 PRK12872 ubiA prenyltransferas  99.9 3.4E-22 8.8E-27  154.2  13.8  224   73-301    54-284 (297)
 40 PRK12324 phosphoribose diphosp  99.9 1.3E-21 3.3E-26  150.7  16.4  162   17-191     2-164 (288)
 41 PRK13387 1,4-dihydroxy-2-napht  99.9   2E-21 5.2E-26  149.5  17.1  279   18-306     2-316 (317)
 42 PRK13105 ubiA prenyltransferas  99.9 2.4E-20   6E-25  143.1  13.9  264   14-301     4-285 (291)
 43 PRK07419 1,4-dihydroxy-2-napht  99.8 9.9E-19 2.5E-23  133.2  18.0  282   13-308     6-303 (304)
 44 PRK08238 hypothetical protein;  99.8 2.9E-19 7.5E-24  136.4  13.4  169   15-196   189-358 (481)
 45 PRK12875 ubiA prenyltransferas  99.8   4E-19   1E-23  135.6  13.6  258   24-303    10-276 (281)
 46 COG1575 MenA 1,4-dihydroxy-2-n  99.8 1.1E-17 2.9E-22  126.7  17.7  282   14-306     3-302 (303)
 47 PRK13595 ubiA prenyltransferas  99.8 1.6E-18   4E-23  131.9  10.7  273   11-309     8-296 (298)
 48 TIGR02235 menA_cyano-plnt 1,4-  98.7 5.7E-07 1.5E-11   61.6  13.1  249   37-302    14-292 (293)
 49 KOG4581 consensus               98.7 1.8E-08 4.5E-13   70.8   4.6  278   18-308    60-352 (359)
 50 PRK13592 ubiA prenyltransferas  98.5 1.2E-05 3.1E-10   53.6  15.5  183   83-281    64-267 (299)
 51 PRK13591 ubiA prenyltransferas  98.3 4.3E-07 1.1E-11   62.4   3.1  153   83-247    76-242 (304)
 52 TIGR00751 menA 1,4-dihydroxy-2  96.2   0.097 2.5E-06   29.8  14.9  224   68-295    33-277 (286)
 53 TIGR02123 TRAP_fused TRAP tran  81.5     3.8 9.7E-05   20.1   7.1  177   71-273   187-386 (681)
 54 TIGR02840 spore_YtaF putative   75.9    0.47 1.2E-05   25.6  -1.0   46  105-150   126-176 (215)
 55 KOG1419 consensus               73.7     3.6 9.3E-05   20.2   3.1   55   29-83     86-152 (654)
 56 PRK04214 rbn ribonuclease BN/u  72.9       5 0.00013   19.4   3.7   49   68-124   107-155 (411)
 57 TIGR03648 Na_symport_lg probab  71.4     4.6 0.00012   19.6   3.2   18   78-95     91-108 (552)
 58 COG2271 UhpC Sugar phosphate p  65.2     9.7 0.00025   17.6   6.5   85   92-181    88-182 (448)
 59 KOG2513 consensus               58.9     5.8 0.00015   19.0   1.7   10   39-48    182-191 (647)
 60 KOG3976 consensus               54.0     7.1 0.00018   18.4   1.5   23   88-110    32-54  (247)
 61 KOG1638 consensus               53.5      16  0.0004   16.4  11.2  118   96-219    43-184 (257)
 62 TIGR01137 cysta_beta cystathio  46.1     6.6 0.00017   18.6   0.3   14    1-14    318-331 (527)
 63 TIGR02230 ATPase_gene1 F0F1-AT  44.5      22 0.00055   15.5   4.8   45   32-86     48-92  (100)
 64 TIGR00908 2A0305 ethanolamine   43.9      22 0.00056   15.4   4.2   10  100-109   262-271 (456)
 65 PRK03545 sugar efflux transpor  39.8      26 0.00065   15.1   3.4   21  275-295   322-342 (390)
 66 PRK12649 putative monovalent c  37.0      28 0.00072   14.8   6.7   17   79-95    353-369 (800)
 67 TIGR01314 gntK_FGGY gluconate   36.5       5 0.00013   19.4  -1.5   35    7-41    302-347 (506)
 68 PRK00625 shikimate kinase; Pro  36.5     5.3 0.00013   19.2  -1.4   21   87-107   101-121 (173)
 69 TIGR00792 gph sugar (Glycoside  33.0      33 0.00084   14.4  10.2   37  114-150    87-127 (470)
 70 COG4125 Predicted membrane pro  32.6     3.9   1E-04   20.0  -2.6   49   76-126    48-96  (149)
 71 COG2119 Predicted membrane pro  30.0      37 0.00094   14.1   8.0   55  155-217    30-94  (190)
 72 pfam04547 Anoctamin Calcium-ac  28.6      21 0.00054   15.5   0.6   36   14-53      4-39  (446)
 73 pfam04923 Ninjurin Ninjurin. N  27.9      40   0.001   13.9   8.3   37  272-308    69-105 (116)
 74 TIGR02278 PaaN-DH phenylacetic  25.5      18 0.00045   16.0  -0.2   14  198-211   572-585 (690)
 75 pfam06609 TRI12 Fungal trichot  25.3      45  0.0011   13.6   8.4   20  211-230   291-310 (598)
 76 TIGR00869 sec62 protein transl  23.6      31 0.00078   14.6   0.7   88   83-179    69-169 (259)
 77 TIGR00876 tal_mycobact transal  23.6      26 0.00066   15.0   0.3   45   58-102   157-211 (350)
 78 TIGR01388 rnd ribonuclease D;   22.1      44  0.0011   13.6   1.3   95    9-112    49-149 (374)
 79 pfam00474 SSF Sodium:solute sy  21.5      53  0.0014   13.1   3.5   21   74-94     61-81  (406)
 80 PRK01253 preprotein translocas  21.5      18 0.00047   15.9  -0.8   40   76-129     9-48  (54)
 81 pfam05858 BIV_Env Bovine immun  20.7      55  0.0014   13.0   1.6   19   63-81    104-122 (548)
 82 KOG4202 consensus               20.1      57  0.0015   12.9   1.5   27   81-107    22-55  (227)

No 1  
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase; InterPro: IPR006370   These sequences are a family of integral membrane proteins that condense para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in Escherichia coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterised members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterised members IPR006371 from INTERPRO .; GO: 0004659 prenyltransferase activity, 0009058 biosynthetic process, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=643.45  Aligned_cols=284  Identities=39%  Similarity=0.680  Sum_probs=274.9

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             78999986304853159989999999998521234334456421699999999999999899999964138877843423
Q gi|254780205|r   19 IAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLR   98 (310)
Q Consensus        19 i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~R   98 (310)
                      +++|.||+|.|||+|++||++||.||..+||..-+.    ...+...++.+|.+|+++||||||++||++|||+|++|||
T Consensus         1 l~~Y~~L~R~DkP~G~lLLl~P~~W~~~LAA~~~~~----s~~p~~~~L~~F~~G~~lMRgAGCviND~~DR~~D~~VeR   76 (291)
T TIGR01474         1 LLPYAKLMRADKPIGTLLLLLPCLWSILLAAQAYDA----SGLPPLLLLALFTVGAILMRGAGCVINDIVDRDFDKQVER   76 (291)
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
T ss_conf             938999972557699999999999999998652067----8886089999999999998640434330462400433400


Q ss_pred             CCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             43101001233210110013443100034555444443210035654443116655554332001010014566301114
Q gi|254780205|r   99 TRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGA  178 (310)
Q Consensus        99 T~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g~~a  178 (310)
                      ||+||||||+||+|||+.+...++.+|+.+++.+|+.|+.+|+.+++++++||++||+|++||++||+||+||++|||+|
T Consensus        77 Tk~RPLasG~vs~~~A~~~~~~~~l~~l~~Ll~LN~~ti~Lgv~sL~lv~~YP~~KR~t~~PQ~~LGlaF~wGalmg~~A  156 (291)
T TIGR01474        77 TKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNSLTILLGVASLALVAIYPFMKRITYWPQLVLGLAFGWGALMGWAA  156 (291)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             00378746631189999999999999999998755799999899999999801132015157999999984358877878


Q ss_pred             CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHC--C
Q ss_conf             575--432024688888742100357998887531000257203466542020-46665337899999999999835--3
Q gi|254780205|r  179 LHA--SFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQT-KLWLFILYGIFVLCFMVAFCLLT--V  253 (310)
Q Consensus       179 v~g--~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~-~~~i~~~~~~~~~~~~~~~~~~~--~  253 (310)
                      ++|  +++..++.||+++++||++|||+|||||||||+|+||||+|++||+|+ +.++..++..++.++..+|...+  .
T Consensus       157 ~~G~~~l~~~a~~LY~a~i~Wt~~YDTiYA~~Dk~DD~kiGvkStA~~FG~~~Pk~~l~~l~~~~i~lL~~aG~~~~ll~  236 (291)
T TIGR01474       157 VQGVMDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDLKIGVKSTALRFGDNTPKPWLGGLYALMILLLALAGLIAGLLL  236 (291)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             61667876889999999999999986887532706467714289988740478178999999999999999999988875


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3799999999999999999980899979999--9987645999999999999986
Q gi|254780205|r  254 NFFAWIGLLIALFLTIKRIIALDISCSKQCC--SFFHSAGVVGILILICLIISLF  306 (310)
Q Consensus       254 ~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~--k~Fk~n~~~g~ii~~~iild~l  306 (310)
                      ++.||.++.+...++.+|+..+|.+||++|+  |.|++|+++|.+++.|+++|.+
T Consensus       237 ~~~yy~~l~~a~~~l~~Qi~~l~~~~P~~C~yG~~F~~N~~vG~~~f~gi~l~~l  291 (291)
T TIGR01474       237 GPVYYLGLAAAALLLIRQIATLDIRDPENCLYGKLFKANNYVGLLLFAGIVLGLL  291 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf             4899999999999999998888516781016877865020899999999998429


No 2  
>PRK12878 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=607.88  Aligned_cols=296  Identities=47%  Similarity=0.830  Sum_probs=282.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01355541054677899998630485315998999999999852123433445642169999999999999989999996
Q gi|254780205|r    6 NFKWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWN   85 (310)
Q Consensus         6 ~~~~~~~~~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~N   85 (310)
                      -..|+ ||.+|++++||+||+|+|||+|++|++|||+||.++++...+..    ..+.+..+.+|.+|+++||||||++|
T Consensus        18 ~~~wv-~~~lP~~~~pY~~L~RldkPiG~~LL~~P~~w~l~laa~~~~~~----~~~~~~~l~lf~~G~~~mRsAGCviN   92 (314)
T PRK12878         18 SGNWV-DRRLPPWLRPYARLARWDRPIGWWLLLWPCWWSAALAAGAAADL----GLPLLWHLFLFFIGAIAMRGAGCTWN   92 (314)
T ss_pred             CCCCH-HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             89744-76288757899999843661989999999999999986156766----66279999999999999931201999


Q ss_pred             HHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf             41388778434234310100123321011001344310003455544444321003565444311665555433200101
Q gi|254780205|r   86 DLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLG  165 (310)
Q Consensus        86 d~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG  165 (310)
                      |++|||+|+||||||+||||||+||++||+++..+++++++.+++++|+.++.+++.+++++++||++||+|++||+++|
T Consensus        93 Di~DrdiD~~v~RTk~RPLasG~iS~~~A~~f~~~l~~~~~~ll~~ln~~~~~l~~~~l~lv~iYP~~KR~t~~PQ~~LG  172 (314)
T PRK12878         93 DIVDRDLDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNRFAIALGIASLAIVAAYPFMKRITWWPQFFLG  172 (314)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             88986004256445678876677799999999999999999999998599999999999999999999862103799999


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             00145663011145754320246888887421003579988875310002572034665420204666533789999999
Q gi|254780205|r  166 IGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFM  245 (310)
Q Consensus       166 ~~~~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~  245 (310)
                      +++++|+++||+|++|++++++++||+++++||++|||+||+||+|||+|+|+||+|+++|++++.++..++.++..++.
T Consensus       173 l~f~~g~l~gw~Av~g~l~~~~~lL~~a~~~Wt~~yDtiYA~qD~~DD~k~GVkStav~fG~~~~~~i~~~~~l~~~ll~  252 (314)
T PRK12878        173 LAFSWGALMGWAATFGSLSWAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGEHTKTWLVLLYGLAVVLMG  252 (314)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             99730588899971688766999999999999999999997314765987699731578543729999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999835337999999999999999999808999799999987645999999999999986
Q gi|254780205|r  246 VAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF  306 (310)
Q Consensus       246 ~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~l  306 (310)
                      ..++..+.+.+|+.++.+...++.+|+..++.+|+++|+++||+|+++|.++++++++|++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~Fk~N~~~G~iif~gi~~~~L  313 (314)
T PRK12878        253 AAFALARAPLLALLGLLAAAAHLAWQIVRLDIDDPAQCLRLFKSNRDAGLLIFAGLVVGGL  313 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999985229999999999999999999817998899999999819999999999998543


No 3  
>PRK12894 consensus
Probab=100.00  E-value=0  Score=566.82  Aligned_cols=280  Identities=27%  Similarity=0.453  Sum_probs=268.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             77899998630485315998999999999852123433445642169999999999999989999996413887784342
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVL   97 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~   97 (310)
                      .++||+||+|+|||+|++|++|||+||.++|+.+.+         ..+.+.++.+|+++||||||++||++|||+|+|||
T Consensus         3 ~w~~y~~L~Rl~kPiG~~Lll~P~~~~l~lA~~g~p---------~~~ll~lf~~G~~lmRsagc~iNdi~Dr~iD~~v~   73 (282)
T PRK12894          3 PWNAYVRLLRLNKPIGILLLWYPTAWALWMANQGFP---------SIDLLMIFLLGTVFMRSAGCVINDIADRHIDRHVA   73 (282)
T ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             729999999330379899999999999998657898---------78999999999999998577998289871588886


Q ss_pred             CCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             34310100123321011001344310003455544444321003565444311665555433200101001456630111
Q gi|254780205|r   98 RTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWG  177 (310)
Q Consensus        98 RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g~~  177 (310)
                      |||+||+|||++|++||+.+..++..+++.++..+|..|+.+++.+.+++++||++||+|++||+++|+++++|+++||+
T Consensus        74 RTk~RPlasG~vs~~~A~~~~~~l~~~~~~~l~~l~~~~~~l~~~~~~~~~~YP~~KR~t~~pq~~LGl~f~~~~l~~~~  153 (282)
T PRK12894         74 RTQFRPLTSGEVSLSEAFILLFILLCASLLLLLKLPINCFYFAVISVLITFLYPFCKRFLNAPQLILGLAFSMGIPMAFI  153 (282)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             76677555678659899999999999999999998599999999999999999999860203469999999989999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             45754320246888887421003579988875310002572034665420204666533789999999999983533799
Q gi|254780205|r  178 ALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFA  257 (310)
Q Consensus       178 av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      |++|+++.+++.+++++++||++|||+||+||+|||+|.|+||+|++||++++.++..++.++..++...+...+.+++|
T Consensus       154 a~~~~~~~~~~~L~~~~~~Wt~~yDtiYA~qD~~dD~k~GikS~ai~fG~~~~~~i~~~~~~~~~l~~~~g~~~~~~~~~  233 (282)
T PRK12894        154 ASGKNLNSDFIVLFLINFSWIIAYDTMYAMTDKADDLKIGVKSTAIYFASYDRLIIALLLIFLHSLWLVWAINKNAEWFF  233 (282)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             97189988999999999999999999999815852987399751787686648999999999999999999985550899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999808999799999987645999999999999986
Q gi|254780205|r  258 WIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF  306 (310)
Q Consensus       258 ~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~l  306 (310)
                      |.++.....++.||++.++.+||++|+|+||+|+++|.++|++++++.+
T Consensus       234 yl~v~~~a~~l~yq~~~i~~~~p~~c~~aF~~N~~~G~iiF~gi~L~~~  282 (282)
T PRK12894        234 YLLWCTAAGILTYQLKLIYARIPKNCFKAFLVSGYYGLVMWFAVGLALI  282 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf             9999999999999999916999899999999801999999999999749


No 4  
>PRK12870 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=560.27  Aligned_cols=287  Identities=30%  Similarity=0.484  Sum_probs=272.8

Q ss_pred             HHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             41054677899998630485315998999999999852123433445642169999999999999989999996413887
Q gi|254780205|r   12 DCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD   91 (310)
Q Consensus        12 ~~~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~d   91 (310)
                      ||..|.+++||+||+|+|||+|++|++|||+||+++|+.+.++         ...+.++.+|+++||||||++||++|||
T Consensus         2 ~~~~~p~w~~y~~L~R~~kP~g~~LL~~p~~~~l~la~~g~p~---------~~~~~~~~~G~~~~rsagc~iNdi~Drd   72 (289)
T PRK12870          2 SRTPEPTWLTIIRLLRWDKPAGRLILMIPALWAVFLAARGLPP---------LPLVGIIILGALATSAAGCVVNDLWDRD   72 (289)
T ss_pred             CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999987899999974467675899999899999997578998---------9999999999999999986999899981


Q ss_pred             CCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             78434234310100123321011001344310003455544444321003565444311665555433200101001456
Q gi|254780205|r   92 IDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGG  171 (310)
Q Consensus        92 iD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~  171 (310)
                      +|++|||||+||+|+|++|++||++++.++..+++.+++++|+.++.+++.+++++++||++||+|++||+++|+++++|
T Consensus        73 iD~~v~RT~~RPl~~G~is~~~A~~~~~~l~~~~~~ll~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~pq~~lG~~~~~~  152 (289)
T PRK12870         73 IDPHVERTRGRPLASRRLSVKVGIVIALVALLCAAGLAFFLNPLSFWLCVAAVPVIFLYPLAKRVFPVPQLVLAAAWGFA  152 (289)
T ss_pred             HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHCCH
T ss_conf             45788888887676777579999999999999999999999999999999999889976511022677740567541003


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63011145754320246888887421003579988875310002572034665420204666533789999999999983
Q gi|254780205|r  172 VFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLL  251 (310)
Q Consensus       172 ~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~  251 (310)
                      +++||+|++|+++.++++|+++.++||++|||+||+||+|||+|+|+||+|+++|++++.++..++.++.+++...++..
T Consensus       153 ~l~gw~av~g~l~~~~~lL~~~~~~Wt~~~DtiYA~qD~~dD~k~Gv~S~av~~G~~~~~~i~~~~~~~~~~l~~~g~~~  232 (289)
T PRK12870        153 VLISWSAVTGHLEVATWLLWGATVFWTLGFDTVYAMSDREDDLRIGINSSAIFFGRYAPEAIGLFFALTVLFLAILGVLL  232 (289)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77899994699876899999999999999989998851753987699877505050069999999999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5337999999999999999999808-9997999999876459999999999999865
Q gi|254780205|r  252 TVNFFAWIGLLIALFLTIKRIIALD-ISCSKQCCSFFHSAGVVGILILICLIISLFL  307 (310)
Q Consensus       252 ~~~~~~~~~~l~~~~~l~~~i~~~~-~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL  307 (310)
                      +.+..||.++.+...++.+|+..++ .++++.|.++|++|+++|.++++++++|+++
T Consensus       233 ~l~~~y~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~F~~N~~~g~llf~gi~~d~ll  289 (289)
T PRK12870        233 ELHPPFWLGLALATVLWARQYRRLQAELPPAAYGQLFLQNVWIGFILLAGMILGSLL  289 (289)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             531999999999999999999996279986999999998399999999999998749


No 5  
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=555.49  Aligned_cols=282  Identities=33%  Similarity=0.541  Sum_probs=271.1

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~   94 (310)
                      +|+|+++|+||+|+|||+|++|+++||+||+++|+.+.+         ....+.++.+|++++|||||++||++|||+|+
T Consensus         1 L~~k~~~Y~~L~Rl~kP~g~~Ll~~p~~~g~~la~~g~~---------~~~~l~~~~~g~~~~r~agc~~Nd~~DrdiD~   71 (282)
T PRK12848          1 LQDRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP---------DLWVLVIFVLGVFLMRAAGCVINDYADRDFDG   71 (282)
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             927799999998426861159999999999998568999---------88999999999999999998999998872325


Q ss_pred             CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             34234310100123321011001344310003455544444321003565444311665555433200101001456630
Q gi|254780205|r   95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFV  174 (310)
Q Consensus        95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~  174 (310)
                      +|+|||+||+|+|++|++||+.+++.++++++.+++++|+.++.+++.+++++++||++||+|++||+++|+++++|+++
T Consensus        72 ~~~RTk~RPl~~G~is~~~A~~~~~~~~~~~~~~l~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~  151 (282)
T PRK12848         72 HVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAFIYPFMKRYTHLPQVVLGAAFGWGIPM  151 (282)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             89888999887772679999999999999999999999999999999999999888765764137502999998756666


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11145754320246888887421003579988875310002572034665420204666533789999999999983533
Q gi|254780205|r  175 GWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVN  254 (310)
Q Consensus       175 g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      ||+|++|+++.+++++|++.++||++|||+||+||+|||+|+|+||+|+++|++++..+..++..+..++...++..+.+
T Consensus       152 g~~a~~g~~~~~~~~L~~~~~~Wt~~~d~~yA~~D~~dD~~~Gv~S~av~~G~~~~~~i~~~~~~~~~l~~~~g~~~~~~  231 (282)
T PRK12848        152 AFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLALAGWLLGLG  231 (282)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             89997499988999999999999999889999705653976699964588650018999999999999999999997373


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             799999999999999999980899979999998764599999999999998
Q gi|254780205|r  255 FFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISL  305 (310)
Q Consensus       255 ~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~  305 (310)
                      +.|+.++.+...++.||+..++.+|+++|+++||+|+++|.++++++++|+
T Consensus       232 ~~y~~~~~~~~~~l~~q~~~v~~~d~~~~~~~F~~N~~~g~ilf~gi~ldy  282 (282)
T PRK12848        232 WGYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNWVGLVLFAGIAASY  282 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999980699889999999973999999999999419


No 6  
>PRK12877 consensus
Probab=100.00  E-value=0  Score=552.46  Aligned_cols=283  Identities=34%  Similarity=0.617  Sum_probs=271.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67789999863048531599899999999985212343344564216999999999999998999999641388778434
Q gi|254780205|r   17 SAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQV   96 (310)
Q Consensus        17 ~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~   96 (310)
                      ||+++|+||+|+|||+|++|++|||+||+++|+.+.        .+..+.+.++.+|++++|||||++||++|||+|++|
T Consensus         1 sk~~~y~~L~Rl~kP~g~~Ll~~p~~~g~~lA~~~~--------~~~~~l~~l~~~G~~l~rsagc~iNd~~D~diD~~v   72 (283)
T PRK12877          1 SKFLLYFKLMRLHSPVIYLLVFFPALFGILLASPSL--------LELLYLLPLFILGSITMRSAGCIINDIFDRKIDKHV   72 (283)
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             972799999753660668999999999999816789--------855999999999999999999899989986036787


Q ss_pred             CCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             23431010012332101100134431000345554444432100356544431166555543320010100145663011
Q gi|254780205|r   97 LRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGW  176 (310)
Q Consensus        97 ~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g~  176 (310)
                      ||||+||+|+|++|++||+.+...++.+++.+++++|+.|+.+++.+.++.++||++||+|++||+++|+++++|+++||
T Consensus        73 ~RT~~RPl~~G~is~~~A~~~~~~~~~~~~~~l~~ln~~~~~l~~~~~~~~~~Yp~~KR~t~~pq~~lG~~~~~~~l~g~  152 (283)
T PRK12877         73 ARTKNRPLASGALSVSQALKILFILLIIALVILLLTNKTAIYLGIFAMIMIVLYPLMKRIFYWPQLFLGFTFNLGVLIGY  152 (283)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHCCHHHHH
T ss_conf             75778766778977889999999999999999985349999999998682442141211143338998787642213549


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             14575432024688888742100357998887531000257203466542020466653378999999999998353379
Q gi|254780205|r  177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFF  256 (310)
Q Consensus       177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  256 (310)
                      +|++|+++.++++++++.++||++|||+||+||+|||+|+|+||+|+++|++++.++..++..+..++...++..+.+..
T Consensus       153 ~av~~~~~~~~~ll~~~~~~W~~~~dtiYA~qD~~dD~k~Gv~S~av~~G~~~~~~i~~~~~~~~~ll~~~~~~~~~~~~  232 (283)
T PRK12877        153 AMVQNKLDIASILMYIGCIFWTIGYDTIYAAQDKKDDKKLGVKSTAIYFGNKIKLWLYRLYIIFILMWISAGIIANLHNI  232 (283)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87189878799999999999999999999842257699749987784127526999999999999999999999874499


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999998089997999999876459999999999999865
Q gi|254780205|r  257 AWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFL  307 (310)
Q Consensus       257 ~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL  307 (310)
                      |+++..+...++.+|+..++.+|+++|+++||+|+++|.++++++++|+++
T Consensus       233 y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~N~~~g~~if~gi~l~~li  283 (283)
T PRK12877        233 FYLAILAAAILFYYQYATLDFDNPANCMYRFKANNYVGLLLFLGFCLGRIV  283 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999998589997999999998399999999999998739


No 7  
>PRK12847 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=547.76  Aligned_cols=283  Identities=34%  Similarity=0.600  Sum_probs=270.3

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             05467789999863048531599899999999985212343344564216999999999999998999999641388778
Q gi|254780205|r   14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDID   93 (310)
Q Consensus        14 ~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD   93 (310)
                      .|.+|+++|+||+|+|||+|++|+++||+||+++|+.+.        .+..+.+.++.+|++++|||||++||++|||+|
T Consensus         2 ~~~~k~~~y~~L~rl~kP~g~~Ll~~p~~~g~~la~~~~--------~~~~~~~~l~~ig~~l~r~ag~~iNd~~DrdiD   73 (284)
T PRK12847          2 DILQKFNAYFKLMRLHKPVGILLVFFPTLFGLLLASHSL--------LPDISLLVLFIIGSILMRSAGCIINDIFDRKID   73 (284)
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             378999999999732674448999999999999836888--------850999999999999999999899989897247


Q ss_pred             CCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             43423431010012332101100134431000345554444432100356544431166555543320010100145663
Q gi|254780205|r   94 SQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVF  173 (310)
Q Consensus        94 ~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l  173 (310)
                      ++|||||+||+|+|++|++||+.++.+++++++.+++++|..|+.+++.+.+++++||++||+|++||+++|+++++|++
T Consensus        74 ~~~~RTk~RPl~~G~is~~~A~~~~~~l~~~~~~~l~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~pq~ilG~~~~~~~l  153 (284)
T PRK12847         74 KHVARTKNRPLASGALSVKQALILLFILLLIALVILLFLNKYTIYLSFIAVILIVLYPLMKRFFYWPQLFLGFTFNSGIL  153 (284)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             89879998764677767899999999999999999832779999999999999999998886301434787777652488


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             01114575432024688888742100357998887531000257203466542020466653378999999999998353
Q gi|254780205|r  174 VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTV  253 (310)
Q Consensus       174 ~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~  253 (310)
                      +||+|++|+++.++++++++.++||++|||+||+||+|||+|+|+||+|+.+|++++.++..++.++..++...++..+.
T Consensus       154 ~g~~a~~~~~~~~~~~L~~~~~~Wt~~~d~~yA~~D~~DD~k~Gv~S~av~~G~~~~~~~~~~~~~~~~ll~~~~~~~~~  233 (284)
T PRK12847        154 MAYAAVQNQLDIEAILLYIGCIFWTIGYDTIYAAQDKKDDLKIGVKSTAIYFGNKTRKWILRLYIISLILWLILGIKSSL  233 (284)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999739988789999999999999998999997154298769965643626430999999999999999999999871


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             379999999999999999998089997999999876459999999999999
Q gi|254780205|r  254 NFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIIS  304 (310)
Q Consensus       254 ~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild  304 (310)
                      +..||.+..+...++.+|+..++.+|+++|+++||+|+++|++++++++++
T Consensus       234 ~~~yy~~~~~~~~~l~~~~~~i~~~~~~~~~~~F~~N~~~g~lif~giilG  284 (284)
T PRK12847        234 NNIFYLAILIAAGIFYYQYKTLDFDNPANCMYRFKANHYVGLLLFLGAVLG  284 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             699999999999999999999289998999999997199999999999959


No 8  
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=548.95  Aligned_cols=284  Identities=29%  Similarity=0.474  Sum_probs=260.4

Q ss_pred             HCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             10546778999986304853159989999999998521234334456421699999999999999899999964138877
Q gi|254780205|r   13 CIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDI   92 (310)
Q Consensus        13 ~~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~di   92 (310)
                      .....|++||.||+|+|||+|++|++|||+||+++++.+.         +....+.++.+|+++||||||++||++||||
T Consensus         4 ~~~~~kl~~y~~L~RldkP~G~~LLl~P~~~~l~la~~~~---------p~~~~l~lf~~G~~~mRsagC~iNDi~Drdi   74 (297)
T PRK12873          4 KSRSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAP---------PSLLLLLLIILGGLAVSGAGCIANDLWDRRI   74 (297)
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             5277758999999811136989999998999999856799---------9789999999999999875539987899662


Q ss_pred             CCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCC----CCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             843423431010012332101100134431000345554444----4321003565444311665555433200101001
Q gi|254780205|r   93 DSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNP----FVICVGFALLFISLLYPFSKRFILCPQVVLGIGF  168 (310)
Q Consensus        93 D~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~----~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~  168 (310)
                      |+||||||+||+|||++|++||+.+..++..+++.+++.+|.    .++.+++.+++++++||++||+|++||+++|+++
T Consensus        75 D~~v~RTk~RPLasG~vS~~~A~~~~~~l~~~~~~ll~~l~~~~~~~~l~la~~~~~~i~~YPl~KR~t~~PQ~~LG~~f  154 (297)
T PRK12873         75 DRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCW  154 (297)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             13654256775235785386899999999999999999965048999999999999999998776553104589999999


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf             4566301114575432024688--88874210035799888753100025720346654202046665337899999999
Q gi|254780205|r  169 AGGVFVGWGALHASFSWPAFFL--CIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMV  246 (310)
Q Consensus       169 ~~~~l~g~~av~g~~~~~~~~L--~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~  246 (310)
                      ++++++||+|++|+++.++.++  |+++++||++|||+||+||+|||+|.|+||+|++||++++..+..++.++.+++..
T Consensus       155 ~~~~l~~waav~g~l~~~~~ll~~~l~~~~Wt~~yDtiYA~qD~~dD~k~GvkS~av~fG~~~~~~i~~~~~l~~~ll~~  234 (297)
T PRK12873        155 GFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLAL  234 (297)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             98899999998088871599999999999999999999997249879976986505776504199999999999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99983533799999999999999999980899--979999998764599999999999998
Q gi|254780205|r  247 AFCLLTVNFFAWIGLLIALFLTIKRIIALDIS--CSKQCCSFFHSAGVVGILILICLIISL  305 (310)
Q Consensus       247 ~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~--~~~~~~k~Fk~n~~~g~ii~~~iild~  305 (310)
                      .++..+.+..||+..++....+.+|+..++.+  +++.|+++||+|+++|.++++++++|+
T Consensus       235 ~g~~~~~~~~yy~~~li~~~~~~~~~~~l~~~~~~~~~~~~~F~~N~~~G~llf~Givl~k  295 (297)
T PRK12873        235 AAFIAQVGFIFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGSLLLLGLILAR  295 (297)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9998618799999999999999999999616676768999999987999999999999618


No 9  
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=531.20  Aligned_cols=286  Identities=22%  Similarity=0.302  Sum_probs=269.3

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             05467789999863048531599899999999985212343344564216999999999999998999999641388778
Q gi|254780205|r   14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDID   93 (310)
Q Consensus        14 ~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD   93 (310)
                      -.|+|+|+|+||+|+|||++.+++.||++|..++++.+.         +.+..+.++.+|++.||||||++||++|||||
T Consensus        22 ~~p~klr~yl~Lir~~h~if~lpf~~~~~~~a~~a~~g~---------p~~~~l~~~~lg~v~~RsAgc~iNdi~DrdiD   92 (313)
T PRK12888         22 RQPGRVRAFLRLVAIEHSVFALPFAYIAALTAMFAADRS---------VHWGDLLLVTVAMVGARTFAMAANRIIDREID   92 (313)
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             984779999999985480999999999999999861799---------99999999999999999999999977443425


Q ss_pred             CCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             43423431010012332101100134431000345554444432100356544431166555543320010100145663
Q gi|254780205|r   94 SQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVF  173 (310)
Q Consensus        94 ~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l  173 (310)
                      ++|+|||+||+|+|++|++||+.+.+.++.+++..+.++|++|+.+++.++.+.++||++||+|++||+++|++++++++
T Consensus        93 ~~v~RTk~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~ls~~~~~~~~~Yp~~KRfT~~pq~~LG~a~~~~~l  172 (313)
T PRK12888         93 ARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAVLGLAQAVGPV  172 (313)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67955578876568867999999999999999999999989999999999999999999988765457999999998788


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHC
Q ss_conf             011145754320246888887421003579988875310002572034665420204666-5337899999999999835
Q gi|254780205|r  174 VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL-FILYGIFVLCFMVAFCLLT  252 (310)
Q Consensus       174 ~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i-~~~~~~~~~~~~~~~~~~~  252 (310)
                      +||+|++|++++++++|++++++||.+|||+||+||+|||+|.|+||+|++||++....+ ..++.++..++...+...+
T Consensus       173 ~~w~Av~g~~~~~~~lL~~~~~~W~~~fDtiYA~qD~edD~k~Gi~S~a~~fG~~~~l~i~~~~~~~~~~ll~~~g~~~~  252 (313)
T PRK12888        173 GAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWGSRVAHVVTFALFVWFGLATG  252 (313)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999728887899999999999999998987871653298749985278868502799999999999999999999973


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33799999999999999999980899979999998-764599999999999998652
Q gi|254780205|r  253 VNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFF-HSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       253 ~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~F-k~n~~~g~ii~~~iild~lL~  308 (310)
                      ++++||+++++...++.||+..++.+|+++|.++| +.|+++|++++.++++|.+++
T Consensus       253 l~~~y~~g~~~~~~ll~yq~~li~~~d~~~~~~aFF~~N~~vglilf~~~l~d~llr  309 (313)
T PRK12888        253 AGALWWAGLLLTAVAFAYEHRIVSPTDLSRVNRAFFTANGFIGIALFGFALGDLLVR  309 (313)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             809999999999999999999927888899999999850399999999999999975


No 10 
>KOG1381 consensus
Probab=100.00  E-value=0  Score=520.23  Aligned_cols=290  Identities=34%  Similarity=0.525  Sum_probs=278.6

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             05467789999863048531599899999999985212343344564216999999999999998999999641388778
Q gi|254780205|r   14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDID   93 (310)
Q Consensus        14 ~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD   93 (310)
                      .-|.++|||.||||++||+|+||++|||.|++.+++       .....+...++.+|..|+++||||||+|||.+|||+|
T Consensus        59 ~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaA-------dag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD  131 (353)
T KOG1381          59 SSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAA-------DAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKDLD  131 (353)
T ss_pred             CCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHCC-------CCCCCCHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHH
T ss_conf             387223259999714787610354320177888606-------9876502689998550087710688540265531466


Q ss_pred             CCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             43423431010012332101100134431000345554444432100356544431166555543320010100145663
Q gi|254780205|r   94 SQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVF  173 (310)
Q Consensus        94 ~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l  173 (310)
                      +||||||.|||+||++|+++|+.|...+..+|+.++.++|+.++.++..+...++.||.+||+|+|||+++|++|+||.+
T Consensus       132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAl  211 (353)
T KOG1381         132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGAL  211 (353)
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEHHHHCCHHHHHHHHHHCCHHHH
T ss_conf             66765323533358756557789999999876799972668889852245240777412220232078897622133545


Q ss_pred             HCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             011145754320-2468888874210035799888753100025720346654202046665337899999999999835
Q gi|254780205|r  174 VGWGALHASFSW-PAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLT  252 (310)
Q Consensus       174 ~g~~av~g~~~~-~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~  252 (310)
                      +||.|+.|+... .++-||+..+.||+.|||||||||++||.|+|+||+|.+||+||+.++..+...++..+...|+..+
T Consensus       212 lGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~La~aG~~s~  291 (353)
T KOG1381         212 LGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASD  291 (353)
T ss_pred             HCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             26464427647024268998413233212346650341453674214655440778716776403989999987443058


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3379999999999999999998089997999999876459999999999999865219
Q gi|254780205|r  253 VNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLDQF  310 (310)
Q Consensus       253 ~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~~~  310 (310)
                      .++.||..+......+..|++.+|.+||++|+|.|++|.+.|.+++.++++|.++|.|
T Consensus       292 q~~pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~~i~~d~llk~~  349 (353)
T KOG1381         292 QTWPYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFSGIVLDTLLKSF  349 (353)
T ss_pred             CCCHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8851788899999998764034446881889999886576248898999999999886


No 11 
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=501.63  Aligned_cols=278  Identities=20%  Similarity=0.199  Sum_probs=256.3

Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             46778999986304853159989999999998521234334456421699999999999999899999964138877843
Q gi|254780205|r   16 GSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQ   95 (310)
Q Consensus        16 ~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~   95 (310)
                      ++|+|+|+||+|+|||+..+   .++.+|.++|+.+.+         ....+.++.+|++.||||||++||++|||+|++
T Consensus        12 ~~K~~~y~~l~r~~~~if~L---p~a~~~~~lA~~g~p---------~~~~l~~~~lg~~~~Rsagc~iNdi~Dr~iD~~   79 (299)
T PRK13106         12 RSKLYIYLRFLRIEQTFFSL---PMAYMGAFLAIRGIP---------PIRTLILIFLALFFLRTAGMTNDNLADREIDAK   79 (299)
T ss_pred             HHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             77999999999982499999---999999999728999---------899999999999999999989998605174468


Q ss_pred             CCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             42343101001233210110013443100034555444443210035654443116655554332001010014566301
Q gi|254780205|r   96 VLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVG  175 (310)
Q Consensus        96 ~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g  175 (310)
                      |||||+||+|||++|++||+.+...++.+++..++++|+.|+.+++.+..++++||++||+|++||+++|+++++++++|
T Consensus        80 v~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~ls~~~~~~~~~YP~~KRft~~pq~~LG~~~~~~~~~~  159 (299)
T PRK13106         80 NPRTRTRPLVTGAITVREAWLLIAAGLIGYFASAYLLNRYALLLSPIVALIAMSYPYMKRYTAFANYHLASVQGLAVFSG  159 (299)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             96668888766887999999999999999999999974999999999999999999988730133699999999789999


Q ss_pred             CCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf             11457543--------2024688888742100357998887531000257203466542020466653378999999999
Q gi|254780205|r  176 WGALHASF--------SWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVA  247 (310)
Q Consensus       176 ~~av~g~~--------~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~  247 (310)
                      |.|++|..        ...+|+++.++++||.+|||+||+||+|||+|.|+||+|++||+++..++..++.++..++...
T Consensus       160 ~~a~~g~~~~~~~~~~~~~~~ll~~a~~~W~~~yDtiYA~qD~~dD~~~Gi~S~a~~fG~~~~~~~~~~~~~~~~ll~~~  239 (299)
T PRK13106        160 AVASLGLEATSLTQVLRSVPWLFVIATILWAVGFDLYNHIPDADFDRKMGLHSFAVLLGNKALAFAGLNQLASVLLAIAG  239 (299)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99985320012354667899999999999999985988737822327659870288885779999999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9983533799999999999999999980899979999998764599999999999998652
Q gi|254780205|r  248 FCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       248 ~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
                      +...+.+++|+.+..+...++.||+...+   +++|.|.|++|+++|+++++++++|+++.
T Consensus       240 g~~~~lg~~~~~~~~i~~~~~~yq~~l~~---~~d~~~aF~~N~~iGlilf~gi~ld~llg  297 (299)
T PRK13106        240 DIAYGLGPIAYAATVLHGLIMAYAYYLAS---KGNFGRAFYYNIYSSIVLGLGIIIDVLLG  297 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf             99986279999999999999999999589---53099999861899999999999999818


No 12 
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=486.81  Aligned_cols=284  Identities=23%  Similarity=0.354  Sum_probs=258.4

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~   94 (310)
                      +-+|+|.|+||+|++|+   .+...++++|+++|+.+.++         ...+.++.+|++.+|+|||++||++|||+|+
T Consensus         4 ~~~kik~yl~l~k~~~t---~~~l~~a~~g~~lA~~g~p~---------~~~l~~~~lg~~~~rsag~~iN~i~D~diD~   71 (291)
T PRK12886          4 FFTKLKVFLEMIKFSHT---LFALPFAGIGAVLAALGTPG---------ASQLDWILMAMVGARTAAMGFNRIIDAEIDA   71 (291)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             89999999999705149---99999999999997578998---------9999999999999999999999898762046


Q ss_pred             CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             34234310100123321011001344310003455544444321003565444311665555433200101001456630
Q gi|254780205|r   95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFV  174 (310)
Q Consensus        95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~  174 (310)
                      +|||||+||+|+|++|++||+++.+.+..+++..++++|++|+.+++.+++++++||++||+|++||+++|+++++||++
T Consensus        72 ~~~RT~~RPL~sG~is~~~a~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~~~~~Yp~~KR~t~~~~~vlG~~~~~~pl~  151 (291)
T PRK12886         72 KNPRTAGRAIPAGLISKGSALLFIVLSSLLFLFAAWFLNPLCLLLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLG  151 (291)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             89666788764689699999999999999999999998799999999999999999999865631089999998636889


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHCC
Q ss_conf             11145754320246888887421003579988875310002572034665420204666-53378999999999998353
Q gi|254780205|r  175 GWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL-FILYGIFVLCFMVAFCLLTV  253 (310)
Q Consensus       175 g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i-~~~~~~~~~~~~~~~~~~~~  253 (310)
                      ||+|++|+++.++++++++.++||.+|||+||+||+|||+|+|+||+|+++|++....+ ..++.+++.++...+...+.
T Consensus       152 gw~Av~g~~~~~~~lL~~~~~~W~~~~d~~ya~~D~edD~k~Gv~Slpv~fG~~~~~~i~~~~~~~~v~~~~~~~~~~~l  231 (291)
T PRK12886        152 AWIAIRGTIELPAILLGLGVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL  231 (291)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998189988999999999999999989999970762987699743688572858999999999999999999999850


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             37999999999999999999808999799999-9876459999999999999865219
Q gi|254780205|r  254 NFFAWIGLLIALFLTIKRIIALDISCSKQCCS-FFHSAGVVGILILICLIISLFLDQF  310 (310)
Q Consensus       254 ~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k-~Fk~n~~~g~ii~~~iild~lL~~~  310 (310)
                      +++|+.+..+....+.||+..++++|+++|.+ +|+.|+++|.++++++++|.+.+.+
T Consensus       232 g~~y~~~~~~~~~~l~y~~~l~~~~d~~~~~~afF~~N~~ig~~lf~~illD~l~~~~  289 (291)
T PRK12886        232 GPWFLAGLAVTGYMLLYEHWLLRGGDLTRLDAAFFQMNGYISVTLFAATLFDRLFYFL  289 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             5999999999999999999990789869999999998499999999999999999864


No 13 
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=487.28  Aligned_cols=279  Identities=20%  Similarity=0.326  Sum_probs=243.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             7789999863048531599899999-999985212343344564216999999999999998999999641388778434
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPCL-WSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQV   96 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~~-~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~   96 (310)
                      |+|+|+|+.|++|.+.    .+|-. .|.++|+.+.         +....+.++.+|++.||||||++||++|||+|++|
T Consensus         2 ~~~~~~~~i~~~htiF----alPfa~~~~~~A~~~~---------p~~~~l~l~~lg~v~~Rsagc~iNdi~DrdiD~~v   68 (286)
T PRK12895          2 NFRDIVDYIKLEHTVF----DLPFILAGYVIAAGHY---------IHPIKILLILIAAVSARTSAMSINRIEGLRYDMIN   68 (286)
T ss_pred             CHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             7899999999976998----8999999999977999---------98899999999999998999899987060434579


Q ss_pred             CCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             23431010012332101100134431000345554444432100356544431166555543320010100145663011
Q gi|254780205|r   97 LRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGW  176 (310)
Q Consensus        97 ~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g~  176 (310)
                      ||||+||+|+|++|++||+.+..+++.+++.+++++|+.|+.+++.+++++++||++||+|++||+++|+++++++++||
T Consensus        69 ~RTk~RpL~sG~is~~eA~~~~~~~~~~~~~~~~~ln~~~~~ls~~al~l~~~YP~~KRft~~pq~~LG~~f~~g~l~a~  148 (286)
T PRK12895         69 PRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGY  148 (286)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             88899979888979999999999999999999997179999999999999998566654255509999999998999999


Q ss_pred             CCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             145754320--246888887421003579988875310002572034665420204666533789999999999983533
Q gi|254780205|r  177 GALHASFSW--PAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVN  254 (310)
Q Consensus       177 ~av~g~~~~--~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      +|++|++++  .++++++++.+|+.+|||+||+||+|||+|+|+||+|++||++....+..++.++...+...+.....+
T Consensus       149 ~Av~~~~~~~~~~~lL~~a~~~W~~gfDtiYA~qD~edD~k~Gi~S~a~~fG~~~~l~i~~~~~~~~~~l~~~~~~~~~~  228 (286)
T PRK12895        149 LAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIRT  228 (286)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99808887208999999999999999989997067320998495356998688218999999999999999999999847


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             79999999999999999998089997999-99987645999999999999986521
Q gi|254780205|r  255 FFAWIGLLIALFLTIKRIIALDISCSKQC-CSFFHSAGVVGILILICLIISLFLDQ  309 (310)
Q Consensus       255 ~~~~~~~l~~~~~l~~~i~~~~~~~~~~~-~k~Fk~n~~~g~ii~~~iild~lL~~  309 (310)
                      .+|+.++.+...++.||+..++++|+++| ..+|+.|+++|.++++++++|.+.+.
T Consensus       229 ~~~~~~l~~~~~ll~yq~~~~~~~d~~~~~~afF~~N~~iGli~~~~iil~~~fp~  284 (286)
T PRK12895        229 LWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFIGFVFLIGIILSLRFPI  284 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999999478986999999998853999999999999982645


No 14 
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=485.25  Aligned_cols=287  Identities=24%  Similarity=0.386  Sum_probs=263.4

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~   94 (310)
                      .++|+|.|.|++|++|++..+-+   +..|.++|+...+..+.+    .++.+.++.+|.+.||+|||++||++|||||+
T Consensus         4 ~~~ki~~~~~lik~~htiFalpf---a~~~~~la~~~~~~~~~~----~~~~l~~~~~a~v~aRsag~~iN~~~Dr~iD~   76 (291)
T PRK12874          4 FTHKLKDISELVVFKHSIFSLPF---IFIAMIVASKQKNGTGWF----GFKLLILGILAAVSARNFAMGFNRLMDRDIDK   76 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             89999999999987008988999---999999986327887875----59999999999999999998998463427535


Q ss_pred             CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             34234310100123321011001344310003455544444321003565444311665555433200101001456630
Q gi|254780205|r   95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFV  174 (310)
Q Consensus        95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~  174 (310)
                      +|||||+||+|+|++|++||+.+.++++.+++..++++|+.|+.+++.++++.++||++||+|++||+++|++++++|++
T Consensus        77 ~~~RT~~Rpl~sG~is~~~a~~~~~~~~~~~~~~~~~lN~l~~~ls~~~l~~~~~Yp~~KRft~~~~~~LG~~~~~~pl~  156 (291)
T PRK12874         77 DNPRTANRPSVDGRISRKGMVIFIVINALIFIVVSYFINTLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIA  156 (291)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             78435787787677799999999999999999999998699999999999999999889836537099999998889999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHCC
Q ss_conf             11145754320246888887421003579988875310002572034665420204666-53378999999999998353
Q gi|254780205|r  175 GWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL-FILYGIFVLCFMVAFCLLTV  253 (310)
Q Consensus       175 g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i-~~~~~~~~~~~~~~~~~~~~  253 (310)
                      ||+|++|+++..++++++++++|+.+|||+||+||+|||+|+|+||+|+++|++.+..+ ..++.++.+++...+...+.
T Consensus       157 ~w~Av~g~~~~~~~~L~~~~~~W~~gfD~iYA~qD~e~D~~~Gl~S~p~~fG~~~~l~i~~~~h~~~~i~~~~~g~~~~l  236 (291)
T PRK12874        157 GSVAVSGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWEAHL  236 (291)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99997499989999999999999999999999775864998699765688680527999999999999999999999751


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3799999999999999999980899979999998764599999999999998652
Q gi|254780205|r  254 NFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       254 ~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
                      +++|+.++.+....+.||+..++.++++.|.++|+.|+++|.++++++++|.++|
T Consensus       237 ~~~y~i~~~i~~~ll~yqh~lv~~d~~~~~~afF~~N~~iglilf~~illd~l~~  291 (291)
T PRK12874        237 GFFAYLGVIVSALILLYEHYLVRKDFKKIDRAFFTLNGYLGIVFFIFIVLDVLFK  291 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6999999999999999999996288967999999972799999999999999739


No 15 
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=440.49  Aligned_cols=287  Identities=18%  Similarity=0.172  Sum_probs=234.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             778999986304853159989999-9999985212343344564216999999999999998999999641388778434
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPC-LWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQV   96 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~-~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~   96 (310)
                      |+|.|.|+.|++|.+    +..|- ..|..+|....+.........-++.+.+..++...||+|||++||++|||+|++|
T Consensus         2 k~k~~~~likf~Hti----FalPFa~~~~~~a~~~~~~~~~~~~~~~w~~l~~~~~a~v~aRsagm~~Nr~~Dr~iD~~n   77 (299)
T PRK12876          2 RIKYFQQLINCKYAL----FSALFLSASTVFALSLPEISQNLFSKEGFKIIVLGGSAFFCARTVGIIVNQIIDRAIDKKN   77 (299)
T ss_pred             CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             699999999885699----9899999999999627655555444324999999999999997898599986241547899


Q ss_pred             CCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             23431010012332101100134431000345554444432100356544431166555543320010100145663011
Q gi|254780205|r   97 LRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGW  176 (310)
Q Consensus        97 ~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g~  176 (310)
                      ||||+||+|+|++|++||+.+.++++.+++..++++|++|+.+++.++++.++||++||+|++||+++|++++++|++||
T Consensus        78 pRT~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~lN~l~~~Ls~~~l~~~~~Yp~~KRft~~~h~~LG~~~~~a~~~~~  157 (299)
T PRK12876         78 PRTSKRVLPAKLLSINFSWLLLLLCSFLFLSLCWFLNPLCFSLAVLSTLLMIVYPYTKRVTFLCHWILGLVYYLAILMNF  157 (299)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             77789988788879989999999999999999999729999999999999999787776121179999999999999999


Q ss_pred             CCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             14575432-----0246888887421003579988875310002572034665420204666-53378999999999998
Q gi|254780205|r  177 GALHASFS-----WPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL-FILYGIFVLCFMVAFCL  250 (310)
Q Consensus       177 ~av~g~~~-----~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i-~~~~~~~~~~~~~~~~~  250 (310)
                      +|++++..     ..+.++..+..+|+.+|||+||+||+|||+|.|+||+|+++|++....+ ..++..+..++...++.
T Consensus       158 ~Av~~~~~~~~l~~~~~l~~~~~~~wvagfD~iYA~qD~e~D~k~Gl~S~p~~fG~~~al~ia~~~h~~~~l~~~~~g~~  237 (299)
T PRK12876        158 FAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDREEGLFSIPARFGEKKAIRIASVNLIVSALAYILSGYF  237 (299)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99818751179999999999999999975357887167754998498633898696008999999999999999999999


Q ss_pred             HCCCHHHHHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             353379999999--99999-99999980899979999998764599999999999998652
Q gi|254780205|r  251 LTVNFFAWIGLL--IALFL-TIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       251 ~~~~~~~~~~~l--~~~~~-l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
                      .+.+..+|...+  +.... .++++...+.++++.|.++|+.|+++|+++|++++.|.+++
T Consensus       238 ~~~~~~~y~~~l~~~~~~l~~~~h~~~~~~~~s~~~~aFF~~N~~igli~Fi~ii~~~~l~  298 (299)
T PRK12876        238 VSNKKEFYLCSLIPLVVILKTIKHYSLIDKKKSELEQKFFLGNIYLALSFFVNMIGLFLLS  298 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_conf             9854899999999999999999999972899505889999850899999999999999706


No 16 
>TIGR01475 ubiA_other 4-hydroxybenzoate polyprenyltransferase, putative; InterPro: IPR006371   A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in IPR006370 from INTERPRO. Protoheme IX farnesyltransferase (heme O synthase) (IPR006369 from INTERPRO) is more distantly related. Because no species appears to have both this protein and a member of IPR006370 from INTERPRO, it is likely that this family of sequences represent 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, and the Chlamydias..
Probab=100.00  E-value=0  Score=420.54  Aligned_cols=287  Identities=24%  Similarity=0.361  Sum_probs=254.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             77899998630485315998999999999852123433445642169999999999999989999996413887784342
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVL   97 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~   97 (310)
                      |+|.|+||.|++|.+-.+ .+  ...|+++++...-.....-.-+..+.+.+..+..+..|++||+.|++.|+||||+||
T Consensus         1 k~~~il~l~k~ehT~FaL-PF--a~~g~lla~~~~N~t~Plfs~~~~~~l~Li~~A~~~ARt~aM~~Nr~~D~~ID~~NP   77 (301)
T TIGR01475         1 KIKDILELIKFEHTLFAL-PF--AYAGALLAAKLANDTAPLFSLPSLKTLILILVALVSARTAAMAFNRIIDEEIDAKNP   77 (301)
T ss_pred             CHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
T ss_conf             956898899999998569-99--999999970288986320466549999999999999999975652230631234686


Q ss_pred             CCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             34310100123321011001344310003455544444321003565444311665555433200101001456630111
Q gi|254780205|r   98 RTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWG  177 (310)
Q Consensus        98 RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~g~~  177 (310)
                      ||||||+|+|+||+|||+.+.++..++.+..++++|++|+.+++++++...+||++||+|++||++||.+.+.++++||.
T Consensus        78 Rtk~R~lv~G~is~~ea~~~~~~~~~lF~~~~~f~N~laf~Lsp~v~l~~~~YP~~KRfT~l~H~~LG~~~glA~~~G~~  157 (301)
T TIGR01475        78 RTKNRPLVSGKISKKEARTLIILSLALFLIASYFLNPLAFILSPVVLLVLIIYPYLKRFTALCHLVLGSVLGLAPLAGWV  157 (301)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97889787764339999999999999999999999899999869999999970227776486779999999999877266


Q ss_pred             CCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4575432--------024688888742100357998887531000257203466542-0204666533789999999999
Q gi|254780205|r  178 ALHASFS--------WPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFS-YQTKLWLFILYGIFVLCFMVAF  248 (310)
Q Consensus       178 av~g~~~--------~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G-~~~~~~i~~~~~~~~~~~~~~~  248 (310)
                      |+.|+++        ..+++++++..+|+.|+|++|+.||.|+|||.|+||.|++|| |++..+...++.++.++..+.+
T Consensus       158 av~~~~~~sl~~~~~~~a~~l~~~~~fW~aGFD~iY~~qD~eFD~~~gL~Sipa~fG~~~aL~ia~~~h~~~~~~~ll~~  237 (301)
T TIGR01475       158 AVIGEISISLDELLLLVAVLLGIGVVFWVAGFDVIYAIQDYEFDKKNGLKSIPARFGVKAALKIASLSHVITFVLLLLLG  237 (301)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             50377310166599999999999999999999998752483544450865421330558999999999999999999999


Q ss_pred             HHHCC---CHHHHHHHHHHHHHHHHHHHHHCC-CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98353---379999999999999999998089-997999-999876459999999999999865
Q gi|254780205|r  249 CLLTV---NFFAWIGLLIALFLTIKRIIALDI-SCSKQC-CSFFHSAGVVGILILICLIISLFL  307 (310)
Q Consensus       249 ~~~~~---~~~~~~~~l~~~~~l~~~i~~~~~-~~~~~~-~k~Fk~n~~~g~ii~~~iild~lL  307 (310)
                      +..+.   +.+|..+.++.+..+.|+|+.+++ +|+++- .++|..|.|.|.++++++++|.++
T Consensus       238 ~~~~~~~lg~~~~l~~~~~~~~l~y~H~i~~~G~~~~~~~~~FF~~N~~~si~~l~~~~~d~~~  301 (301)
T TIGR01475       238 FYVGEKALGYIALLALLLIGLILVYEHSIVDPGKDLSKIQRAFFTVNGFLSIIFLIGVIIDVLL  301 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9970268999999999999999998887743785676898998769899999999999998729


No 17 
>PRK12869 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=419.97  Aligned_cols=273  Identities=20%  Similarity=0.247  Sum_probs=234.1

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             78999986304853159989999999998521234334456421699999999999999899999964138877843423
Q gi|254780205|r   19 IAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLR   98 (310)
Q Consensus        19 i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~R   98 (310)
                      +|+|+||+   ||++++++.+|+++|.++++...+          ...+....+|++++|++||++||++|||+|++|+|
T Consensus         1 lk~Y~~L~---Kp~~~~l~~~~~~~g~~la~~~~~----------~~~~~~~~~g~~l~~~~~~~~N~~~DrdiD~~m~R   67 (278)
T PRK12869          1 LNPYLKLL---KPRVIWLLDLAAVAGYIYAAGGVD----------WGSLIALLIVGTLASGGSAAFNHYWERDIDAVMKR   67 (278)
T ss_pred             CHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             97689895---599999999999999999389998----------79999999999999999999983887434768888


Q ss_pred             CCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHH-HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             431010012332101100134431000345554-44443210035-6544431166-55554332001010014566301
Q gi|254780205|r   99 TRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQ-FNPFVICVGFA-LLFISLLYPF-SKRFILCPQVVLGIGFAGGVFVG  175 (310)
Q Consensus        99 T~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~-ln~~~~~l~~~-~~~~~~iYp~-~KR~t~~p~~~lG~~~~~~~l~g  175 (310)
                      |++||+|+|++|++||+.++..+.++|+.+++. .|+.+..+... ...+.++||. +||+|+++|+++|+++++|+++|
T Consensus        68 T~~RPlpsG~is~~~a~~~~~~l~~~g~~~~~~~~~~~~a~~~~~~~~~y~~iYt~~lKr~t~~~~~igg~~ga~p~l~G  147 (278)
T PRK12869         68 TSKRPLPSGLVSPKEALAYSLALSALGILLGFLLLGPLPGLFIALGWFFYAVVYTIWLKRRTWLNIVIGGFAGNAAFLAG  147 (278)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             88884325888899999999999999999999999999999999999999999876252066186999999888999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11457543202468888874210035799888753100025720346654202-04666533789999999999983533
Q gi|254780205|r  176 WGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQ-TKLWLFILYGIFVLCFMVAFCLLTVN  254 (310)
Q Consensus       176 ~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~-~~~~i~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      |+|++|++++++++++...++||.+||+.||++|+|||+|+|+||+|+.+|++ ++..+..+....+.+..........+
T Consensus       148 w~a~~g~~~~~~~~l~~~~~~W~~~hf~~~a~~~~edy~~aGi~mlp~~~g~~~t~~~i~~~~~~~~~~~~~~~~~~~~g  227 (278)
T PRK12869        148 YALGKGSVDLPAVLLSFAIYLWIPGHIWALAYKYREDYRRAGVPMLPAVVDEKTAVRAISILNAASIPYILLLYLYFGGG  227 (278)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99983999858999999999998999999999947609867998886211862499999999999999999999998714


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             799999999-99999999998089997999999876459999999999999
Q gi|254780205|r  255 FFAWIGLLI-ALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIIS  304 (310)
Q Consensus       255 ~~~~~~~l~-~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild  304 (310)
                      ..|+....+ ....+.++++..+++|+|+|+|.|+.|+.++.+++++++++
T Consensus       228 ~~y~~~~~~~~~~~l~~~~~~~~~~~~~~a~k~F~~S~~yl~llfi~lvl~  278 (278)
T PRK12869        228 LIGLILVAAGVAATLATSIRALVNPTDEAMWKMFKASSPYLALFLLALIIS  278 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999728987999999999999999999999979


No 18 
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00  E-value=0  Score=413.40  Aligned_cols=285  Identities=21%  Similarity=0.275  Sum_probs=242.6

Q ss_pred             HCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             10546778999986304853159989999999998521234334456421699999999999999899999964138877
Q gi|254780205|r   13 CIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDI   92 (310)
Q Consensus        13 ~~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~di   92 (310)
                      ....+++|+|+||+   ||+.+.++.+|+++|+++|+.+.         +....+....+|++++|++||++||++|||+
T Consensus        10 ~~~r~~lk~y~~L~---Kp~i~~l~~~t~~~g~~lA~~~~---------~~~~~~~~~~~g~~l~~~aa~~~N~~~d~di   77 (303)
T PRK04375         10 RSSRATFKDYLALT---KPRVVSLNLFTALVGMLLAPPGL---------VNPPLLLLTLLGIALGAGAAGALNNYIDRDI   77 (303)
T ss_pred             CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             97142099999996---39999999999999999956789---------9999999999999999999999977721041


Q ss_pred             CCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH-HHHCCC-CCCCCCCCCHHHHHHHH
Q ss_conf             84342343101001233210110013443100034555-4444432100356544-431166-55554332001010014
Q gi|254780205|r   93 DSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLL-QFNPFVICVGFALLFI-SLLYPF-SKRFILCPQVVLGIGFA  169 (310)
Q Consensus        93 D~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~-~ln~~~~~l~~~~~~~-~~iYp~-~KR~t~~p~~~lG~~~~  169 (310)
                      |++|+||++||+|+|++|++||..++..+..+|+.++. ..|+++..+++.+++. .++||. +||+|+++++++|++++
T Consensus        78 D~~m~RT~~RPlpsG~is~~~a~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~~Y~~iYt~~lKR~t~~~~~vGgi~Ga  157 (303)
T PRK04375         78 DAIMERTKNRPLVTGRISPREALVFGLVLGVLGFLLLWLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGA  157 (303)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHH
T ss_conf             66788889985215887899999999999999999999998899999999999988875349987155244699898745


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHH
Q ss_conf             5663011145754320246888887421003579988875310002572034665420204666533789-999999999
Q gi|254780205|r  170 GGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGI-FVLCFMVAF  248 (310)
Q Consensus       170 ~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~-~~~~~~~~~  248 (310)
                      +||++||+|++|++++++++|+...++||++|++.+|++|+|||+|+|+||+|+.+|++........+.+ .+.......
T Consensus       158 ~ppl~Gw~Av~g~~~~~~~~Lf~~~~~Wq~pHf~alA~~~~~DY~~aG~~mlPv~~g~~~t~~~~~~~~~~l~~~s~~~~  237 (303)
T PRK04375        158 MPPLIGWAAVTGSISWEALILFLIIFLWTPPHFWALAIFRRDDYAAAGIPMLPVVHGIRVTKRQILLYTILLAAVTLLPV  237 (303)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             57888899965999789999999999998687899999861069867973043145759899999999999999998999


Q ss_pred             HHHCCCHHHHHHHHHHH-HHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98353379999999999-99999999808999-799999987645999999999999986521
Q gi|254780205|r  249 CLLTVNFFAWIGLLIAL-FLTIKRIIALDISC-SKQCCSFFHSAGVVGILILICLIISLFLDQ  309 (310)
Q Consensus       249 ~~~~~~~~~~~~~l~~~-~~l~~~i~~~~~~~-~~~~~k~Fk~n~~~g~ii~~~iild~lL~~  309 (310)
                      .....++.|.....+.. ..+.++++.+++++ ++.+++.|+.|.++..++++++++|++++.
T Consensus       238 ~~~~~g~~y~~~a~~~~~~~l~~~~~~~~~~~~~~~ar~lF~~S~~yL~llf~~lvlD~ll~~  300 (303)
T PRK04375        238 LVGMAGWVYLVVALLLGAGFLYYAWRLYRDPDDKKWARKLFRYSINYLTLLFVALLVDHLLPL  300 (303)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             980020999999999999999999999838896499999999999999999999999998858


No 19 
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=416.27  Aligned_cols=280  Identities=17%  Similarity=0.178  Sum_probs=226.7

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~   94 (310)
                      |.+++++|++|+|+|     +++.|||+|+..++-....     +..+....+.++.+|+.+||+|||++||+.|||+||
T Consensus         1 m~e~l~ayi~LtR~~-----~ll~WP~lw~~~Lal~~a~-----~g~~~~~~l~if~Lg~vlmrsAGCviNDyaDR~~D~   70 (297)
T PRK12871          1 MKETLKAYIDLTRAH-----FLPAWPLLFCSGLVLAFAN-----YGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDR   70 (297)
T ss_pred             CHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHCCCH
T ss_conf             946899999999883-----9988899998799999864-----699976799999999999970575110034310220


Q ss_pred             C-CCCC--------CCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             3-4234--------310100123321011001344310003455544----44432100356544431166555543320
Q gi|254780205|r   95 Q-VLRT--------RSRPLPSGQCTRFQALVFAVLQFLISFVLLLQF----NPFVICVGFALLFISLLYPFSKRFILCPQ  161 (310)
Q Consensus        95 ~-~~RT--------~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~l----n~~~~~l~~~~~~~~~iYp~~KR~t~~p~  161 (310)
                      + +|||        |+||+|||+||+|||+.+++.++++++.+.+++    |..++.+++.+..++.+||++||+|++||
T Consensus        71 ~~ve~~v~r~~r~~k~RPLpsG~vs~keAl~lf~~L~~~~~~LvL~Lp~~~~~~~~~~~l~A~~la~~YPfmKR~t~~Pq  150 (297)
T PRK12871         71 LDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVKKRNQKYPV  150 (297)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             10244210025665689799888688999999999999999999983253079999999999999999898853660329


Q ss_pred             HHH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             010--100145663011145754320246888887421003579988875310002572034665420204666533789
Q gi|254780205|r  162 VVL--GIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGI  239 (310)
Q Consensus       162 ~~l--G~~~~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~  239 (310)
                      ..+  +.+++++|++|+ +++|+.+..+|+++.+..+||++|||+||++|+|||+|.|+||+|+.||++.+.+...++..
T Consensus       151 a~L~g~~~f~~~p~a~a-a~~G~~~~~~~Ll~~~~l~WTvAYDT~Yam~DredDlkiGvKStAILFG~k~~~~~i~~~~~  229 (297)
T PRK12871        151 AQLLGRTDFTLFPAAGY-LCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTA  229 (297)
T ss_pred             HHHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999998757899999-98199878999999999999999999998714215485283032212167633799999999


Q ss_pred             HHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999983533799-9999999999999999808999799999987645999999999999986
Q gi|254780205|r  240 FVLCFMVAFCLLTVNFFA-WIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF  306 (310)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~l  306 (310)
                      ........ ...+.+.+. |..+........++++..+.+++..|+|+|.-|...+.+.-+++++|..
T Consensus       230 l~~~~~l~-~~~~~~~~~l~~~~~g~~ll~~~~~~l~~~~~~~~~~~a~~~~h~~~~~~~~~~~~~~~  296 (297)
T PRK12871        230 LHFLAAIF-FLRELGPIALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVSIILDFI  296 (297)
T ss_pred             HHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999-99752637699999999999999999975258551788888875426777588677520


No 20 
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00  E-value=0  Score=396.82  Aligned_cols=284  Identities=31%  Similarity=0.498  Sum_probs=263.7

Q ss_pred             HCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             10546778999986304853159989999999998521234334456421699999999999999899999964138877
Q gi|254780205|r   13 CIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDI   92 (310)
Q Consensus        13 ~~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~di   92 (310)
                      ..++.++++|.+++|++||+++.++.+|+.||..+++...+         ....+.++.++.+.+|++||++||++|||+
T Consensus         4 ~~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~---------~~~~~~l~~l~~~~~~~ag~~iND~~D~ei   74 (289)
T COG0382           4 MSLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLP---------SLKLLLLAFLAFFLARSAGYVINDLADREI   74 (289)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             30035699999999712499899999999999999864441---------799999999999999999999999961763


Q ss_pred             CCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             84342343101001233210110013443100034555444443210035654443116655554332001010014566
Q gi|254780205|r   93 DSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGV  172 (310)
Q Consensus        93 D~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~  172 (310)
                      ||+|+||++||+|||++|++||+.+.+++.++++.+.+++|+.++.+++.+.++...||++||+|++||..+|.++++++
T Consensus        75 D~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y~~~Kr~~~~~~~~lg~~~~~~~  154 (289)
T COG0382          75 DRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGA  154 (289)
T ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             06799866799987876799999999999999999999970999999999999999999852577315999999999999


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             30111457543202468888874210035799888753100025720346654202046665337899999999999835
Q gi|254780205|r  173 FVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLT  252 (310)
Q Consensus       173 l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~  252 (310)
                      ++||+++.+++...++++++..++|+.++|++|++||+|+|+++|+||+|+.+|+++...+..+.......+...++..+
T Consensus       155 ~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~  234 (289)
T COG0382         155 LAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAG  234 (289)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999975853389999999999999999999987524319876972033885754489999999999999999999998


Q ss_pred             CCH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             337-99999999999999999980899979999998764599999999999998
Q gi|254780205|r  253 VNF-FAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISL  305 (310)
Q Consensus       253 ~~~-~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~  305 (310)
                      ... .|+.+.......+.+|+...+.++++.|.+.|+.|..+|.+++++..++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (289)
T COG0382         235 LLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGLILAV  288 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             719999999999999999999997342214579999983699999999999974


No 21 
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase; InterPro: IPR006369   This family describes protoheme IX farnesyltransferase, also called haeme O synthase, an enzyme that creates an intermediate in the biosynthesis of haeme A . Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor. ; GO: 0008495 protoheme IX farnesyltransferase activity, 0006783 heme biosynthetic process, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=393.85  Aligned_cols=280  Identities=20%  Similarity=0.283  Sum_probs=241.6

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             89999863048531599899999999985212343344564216999999999999998999999641388778434234
Q gi|254780205|r   20 APYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRT   99 (310)
Q Consensus        20 ~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~RT   99 (310)
                      |.|+||+   ||+.+.|+.+++..|+++|..+.+....   ......++...+|+.+..+++|++|+++|||||++|+||
T Consensus         1 k~y~~Lt---Kp~~~~L~~~t~~~G~~lA~~~~~~~~~---~~~~~~~~~~~~G~~L~~~~A~a~N~~~DrdiD~~M~RT   74 (297)
T TIGR01473         1 KDYLQLT---KPRVISLLLITAFAGMWLASGGADKLSF---LVNLPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRT   74 (297)
T ss_pred             CCHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9337788---6789999999999998762256665431---116899999999999999998797212146610017564


Q ss_pred             CCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH-HHHHCC-CCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             31010012332101100134431000345554-44443210035654-443116-6555543320010100145663011
Q gi|254780205|r  100 RSRPLPSGQCTRFQALVFAVLQFLISFVLLLQ-FNPFVICVGFALLF-ISLLYP-FSKRFILCPQVVLGIGFAGGVFVGW  176 (310)
Q Consensus       100 ~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~-ln~~~~~l~~~~~~-~~~iYp-~~KR~t~~p~~~lG~~~~~~~l~g~  176 (310)
                      ++||+|+|+||++||+.++..+.++|+..++. .|+++..+++.+++ ++++|+ ++||.|+++.+++|++++.||++||
T Consensus        75 ~~RP~v~G~~~p~~al~fg~~l~~~g~~~L~~~~N~l~A~l~~~g~f~Yv~~YT~~lKR~t~~NtviGg~~Ga~PpliGw  154 (297)
T TIGR01473        75 RNRPLVTGRISPREALAFGLLLGVLGVALLAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGW  154 (297)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHH
T ss_conf             56885436666667999999999999999999873999999999999888775120357421354253065121342404


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHH---HHHHHHHHHHHHHH-C
Q ss_conf             1457543202468888874210035799888753100025720346654202046665337---89999999999983-5
Q gi|254780205|r  177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILY---GIFVLCFMVAFCLL-T  252 (310)
Q Consensus       177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~---~~~~~~~~~~~~~~-~  252 (310)
                      +|++|+++.++++|+...|+||++|.+.-|+.-+|||+++|+||+|+..|++..+.....+   .+.+....+..... .
T Consensus       155 ~Av~g~~~~~~~~L~~i~F~WqPpHFwaLA~~~~dDY~~A~iPMLPvv~g~~~t~~~I~~yC~~~~~L~~~~~~~~~~~~  234 (297)
T TIGR01473       155 AAVTGSISLEAWLLFAIIFLWQPPHFWALALKYKDDYAAAGIPMLPVVKGERITKRQIALYCVYTAALFPVSLLLYFLGA  234 (297)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             01069988789999999998767889999976578886289510454162799999999999999999999999987400


Q ss_pred             CC---HHHHH-HHHHHHHHHHHHHHHHCCCC----HHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33---79999-99999999999999808999----799--99998764599999999999998
Q gi|254780205|r  253 VN---FFAWI-GLLIALFLTIKRIIALDISC----SKQ--CCSFFHSAGVVGILILICLIISL  305 (310)
Q Consensus       253 ~~---~~~~~-~~l~~~~~l~~~i~~~~~~~----~~~--~~k~Fk~n~~~g~ii~~~iild~  305 (310)
                      .+   ++|.+ +.++.+.++.+....+++++    +++  ++|.|+.|..+..++++.+++|+
T Consensus       235 ~g~~g~~Y~~~a~~l~a~~l~~~~~~~~~~~~~~~~~~kwA~k~F~~S~~yL~~~f~~~~~~~  297 (297)
T TIGR01473       235 TGYLGWLYLIVATLLGALFLYLALKFYRDPDNYSGDRKKWARKLFKFSLIYLALLFLALLIDS  297 (297)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             020579999999999999999988444156788714568876416899999999999976179


No 22 
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00  E-value=0  Score=378.31  Aligned_cols=285  Identities=15%  Similarity=0.123  Sum_probs=239.6

Q ss_pred             HHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             41054677899998630485315998999999999852123433445642169999999999999989999996413887
Q gi|254780205|r   12 DCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD   91 (310)
Q Consensus        12 ~~~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~d   91 (310)
                      .|.-.+++|.|+||+   ||+.+.++++++.+|+++|..+.         .....+....+|++++++++|++||++|||
T Consensus         6 ~~~~~s~lk~y~~Lt---Kpri~~lv~~ta~~g~~lA~~~~---------~~~~~~l~~~lG~~l~~~sa~~~N~~~erd   73 (306)
T PRK13362          6 SRQWEASVKDYFQVT---KPGIIFGNVISVAGGFFLASKGH---------VDPVLMLAAVIGLSLVVASGCALNNCIDRD   73 (306)
T ss_pred             CCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             453565599999986---09999999999999999817899---------999999999999999999999987157644


Q ss_pred             CCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH-HHHHCC-CCCCCCCCCCHHHHHHH
Q ss_conf             784342343101001233210110013443100034555-444443210035654-443116-65555433200101001
Q gi|254780205|r   92 IDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLL-QFNPFVICVGFALLF-ISLLYP-FSKRFILCPQVVLGIGF  168 (310)
Q Consensus        92 iD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~-~ln~~~~~l~~~~~~-~~~iYp-~~KR~t~~p~~~lG~~~  168 (310)
                      +|++|+||++||+|+|++|++||+.++..+..+|+.+++ ..|+++..++..+.+ ++++|+ ++||.|+++++++|+++
T Consensus        74 iD~~M~RT~~RPlp~g~is~~~A~~~~~~l~~~g~~~l~~~~N~~~a~l~~~~~~~Y~~iYT~~lKr~t~~n~~iG~i~G  153 (306)
T PRK13362         74 IDAKMQRTANRVTVTGEISLGEALGFGLALGVLGFGLLAAFTNPLAALFAAFGYVVYVGIYSLYLKRNSVYGTLVGSLSG  153 (306)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             56899999999777788878899999999999999999997889999999998532788778778417641026787740


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             45663011145754320246888887421003579988875310002572034665420204666533789999999999
Q gi|254780205|r  169 AGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAF  248 (310)
Q Consensus       169 ~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~  248 (310)
                      ++||++||+|++|+++.++++++...++||++|.+..|+.++|||+|+|+||+|+..|++........|.+.........
T Consensus       154 a~PpliGw~A~~g~l~~~~~~Lf~i~f~Wq~pHF~alA~~~r~DY~~Ag~pMLPv~~g~~~T~~~i~~y~~~l~~~sll~  233 (306)
T PRK13362        154 AMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTLLL  233 (306)
T ss_pred             HHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             01035413100699886899999999997569999999980875986899747577773779999999999999999999


Q ss_pred             HH-HCCCHHHHHHH-HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98-35337999999-9999999999998089--9979999998764599999999999998652
Q gi|254780205|r  249 CL-LTVNFFAWIGL-LIALFLTIKRIIALDI--SCSKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       249 ~~-~~~~~~~~~~~-l~~~~~l~~~i~~~~~--~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
                      +. ...++.|.... ......+...++..+.  ++++.+.|.|+.|..|..++++++++|+++.
T Consensus       234 ~~~g~~g~~y~~~a~~l~~~~l~~~~~~~~~~~~~~~~ArklF~~Si~YL~llf~~l~lD~~v~  297 (306)
T PRK13362        234 PLAGYTGIGYLAVAAATSLWWLAMALKGYRHAVDDLKWARQLFAFSILTITALSVMMLLDFVVA  297 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9987604999999999999999999999861578659999999999999999999999998215


No 23 
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=0  Score=370.45  Aligned_cols=282  Identities=22%  Similarity=0.289  Sum_probs=248.3

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~   94 (310)
                      ..+++|+|+||+   ||+.+.++.+++..|+++|..     +    ......+....+|..+..+++|++|+++|||||+
T Consensus        14 ~~~~~k~yl~Lt---KPrvi~L~~it~~~g~~lA~~-----~----~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~   81 (304)
T COG0109          14 SRSTIKDYLQLT---KPRVISLLLITAFAGMLLAPR-----G----SINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDA   81 (304)
T ss_pred             HHHHHHHHHHHH---CCEEEEHHHHHHHHHHHHCCC-----C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             677899999870---870552499999999997154-----6----5668999999999999998998986142540677


Q ss_pred             CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH-HHHHCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf             34234310100123321011001344310003455-5444443210035654-443116-65555433200101001456
Q gi|254780205|r   95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL-LQFNPFVICVGFALLF-ISLLYP-FSKRFILCPQVVLGIGFAGG  171 (310)
Q Consensus        95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~-~~ln~~~~~l~~~~~~-~~~iYp-~~KR~t~~p~~~lG~~~~~~  171 (310)
                      +|+||++||+|+|+|+++||+.|+..+.++|+.++ +..|+++..+++.+++ ++++|+ ++||.|+++.+++|++++.|
T Consensus        82 ~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~P  161 (304)
T COG0109          82 LMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMP  161 (304)
T ss_pred             HCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf             53221589887774289999999999999999999999879999999999999876321010377633025401245566


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63011145754320246888887421003579988875310002572034665420204666533789999999999983
Q gi|254780205|r  172 VFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLL  251 (310)
Q Consensus       172 ~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~  251 (310)
                      |++||+|++|+++.++++|++..|+||++|.+.-|+..+|||+++|++|+|+..|++..+.....|.+......+.....
T Consensus       162 pliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~  241 (304)
T COG0109         162 PLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALL  241 (304)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             52305656088780599999999992667999999997887987499825413438999999999999999999999984


Q ss_pred             CCC-HHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             533-7999-99999999999999980899979999998764599999999999998652
Q gi|254780205|r  252 TVN-FFAW-IGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       252 ~~~-~~~~-~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
                      +.. +.|. ++.+.....+.+.++..+.+|.+.++|.|+.|+.+..++|+.+++|+++.
T Consensus       242 g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~~lf~~l~id~~~~  300 (304)
T COG0109         242 GYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLALLFVALLIDSLLL  300 (304)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00006999999999999999999996085379999999999999999999999999873


No 24 
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=366.15  Aligned_cols=277  Identities=18%  Similarity=0.202  Sum_probs=238.7

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~   94 (310)
                      |.+|+|+|+||+|   |..+.+..+++++|.++|....+         ....+.+..+|+.++|++||++||++|+|+||
T Consensus         1 m~sklk~y~~L~r---p~~~~~~~~~~~~g~~lA~~~~~---------~~~~~~l~~l~~~l~~~a~~~iNd~~D~diD~   68 (281)
T PRK12884          1 LRAKLKAYLDLLR---PEHGLMAGIAVVLGAILALGFLP---------DLTKALLGFLSAFFASASAFALNDYFDVEIDR   68 (281)
T ss_pred             CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf             9278999999965---87789999999999999767999---------78999999999999999998853624084250


Q ss_pred             CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             3423431010012332101100134431000345554444432100356544431166-555543320010100145663
Q gi|254780205|r   95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGIGFAGGVF  173 (310)
Q Consensus        95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~~~~~~~l  173 (310)
                      +|  |++||+|||++|++||+.+++.+.++|+.+++.+|+.+..++..+.++..+||+ +||+++++++++|.+++++++
T Consensus        69 ~n--~~~RPlpsG~is~~~A~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~lK~~~~~~~~~~~~~~g~~~l  146 (281)
T PRK12884         69 IN--RPDRPIPSGRVSLREALLLAIALFILGIVAAYLISPLAFAVVVLVLVLGILYDYKLKEYGLIGNLYVAFLTGMTFI  146 (281)
T ss_pred             CC--CCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             06--8999888862789999999999999999999999999999999999999999999995765359999999999999


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHHHC
Q ss_conf             01114575432024688888742100357998887531000257203466542020466653-37899999999999835
Q gi|254780205|r  174 VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFI-LYGIFVLCFMVAFCLLT  252 (310)
Q Consensus       174 ~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~-~~~~~~~~~~~~~~~~~  252 (310)
                      .||.+++++.+..++.++...++|+.+||++|++||+|||+++|+||+|+++|++....+.. ++.+.+.+.........
T Consensus       147 ~g~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~Gi~tlpv~~G~~~a~~~~~~~~i~~~~l~~~~~~~~~  226 (281)
T PRK12884        147 FGGIAAGELITEKSWLLAAMAFLMDLGREIAKDIEDVEGDRKRGARTLAILYGEKIAGRIAAALFIIAVALSPIPYLLGW  226 (281)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999738975999999999999999999999805254198769926773277898999999999999999999999985


Q ss_pred             CCHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3379999999999999999-9980899979999998764599999999999998
Q gi|254780205|r  253 VNFFAWIGLLIALFLTIKR-IIALDISCSKQCCSFFHSAGVVGILILICLIISL  305 (310)
Q Consensus       253 ~~~~~~~~~l~~~~~l~~~-i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~  305 (310)
                      .++.|....++....+.|+ ++.++++|+++++|.||.+..+..+.+++++++.
T Consensus       227 ~g~~y~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~m~l~~iaf~iga  280 (281)
T PRK12884        227 LNYLYLAPILLADLIFLYSAYRLLRSQDRETINKIRRITLTGMLLALVAFAIGA  280 (281)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             019999999999999999999992499999999999999999999999999837


No 25 
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00  E-value=0  Score=347.01  Aligned_cols=269  Identities=17%  Similarity=0.179  Sum_probs=227.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             77899998630485315998999999999852123433445642169999999999999989999996413887784342
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVL   97 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~   97 (310)
                      ++|+|+||+   ||+...+..+.++.|..++....+         ....+.....|+.+++++||++||++|||+||.|+
T Consensus         3 ~lk~y~~L~---kp~~~~l~~~t~~~G~~la~~~~~---------~~~~~~~~~~~~~l~~~a~~~iNd~~D~eiD~in~   70 (276)
T PRK12882          3 SVRGYLELM---RPGNAVVAGLAAFIGALIAGGILT---------SPADSGLAFAAVLLVTGAGNAINDYFDREIDKINR   70 (276)
T ss_pred             CHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             589999995---698999999999999999758899---------68999999999999999999998475160057889


Q ss_pred             CCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             343101001233210110013443100034555444443210035654443116-6555543320010100145663011
Q gi|254780205|r   98 RTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYP-FSKRFILCPQVVLGIGFAGGVFVGW  176 (310)
Q Consensus        98 RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp-~~KR~t~~p~~~lG~~~~~~~l~g~  176 (310)
                        |+||+|||++|++||+.+++.++.+|+.+++.+|+.+..+++.+.++.++|+ ++||.++++++++|...+.+++.||
T Consensus        71 --p~RPlpsG~Is~~~Al~~~~~l~~~~~~l~~~~n~~~~~~~l~~~~~~~iYs~~lKr~~~~~ni~ig~~~g~~~l~g~  148 (276)
T PRK12882         71 --PDRPIPSGAVSPKGALAYSVLLFAAGVALAFLLNPLCLAIALFNSLLLILYAQTLKGTPGLGNASVAYLTGSTFLFGG  148 (276)
T ss_pred             --CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             --999887688599999999999999999999999999999999999999999999987766068999998889999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHH-HHHHHHHHHHHCCCH
Q ss_conf             1457543202468888874210035799888753100025720346654202046665337899-999999999835337
Q gi|254780205|r  177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIF-VLCFMVAFCLLTVNF  255 (310)
Q Consensus       177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~  255 (310)
                      .+++++.+...+.++...++|+.+||++|++||+|||+++|+||+|+++|++....+..++.+. +.+..+.......+.
T Consensus       149 ~~~~~~~~~~~~~l~~~~f~~~~~~~~~~d~~d~egD~~~Gi~tlPv~~G~~~t~~~~~~~~~~~~~~sllp~~~~~~g~  228 (276)
T PRK12882        149 AAVGLEGLLALLVLFALAALATLAREIVKDAEDIEGDRAEGARTLPIVIGVRKASYLAAAFVLGAVLASPVPYLLSIWGL  228 (276)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99837632899999999999999999999989778899769962050137688999999999999999999999987219


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999-999999999808999799999987645999999999
Q gi|254780205|r  256 FAWIGLLIA-LFLTIKRIIALDISCSKQCCSFFHSAGVVGILILIC  300 (310)
Q Consensus       256 ~~~~~~l~~-~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~  300 (310)
                      .|....++. ...+.++++..+.+|+++++|.||.|..+|++.|+.
T Consensus       229 ~Yl~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~k~s~~~~~l~F~~  274 (276)
T PRK12882        229 WYLVLVAPADLVILFAAIRGLSCTDPTKSSKLLKAGMFAALAAFVV  274 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999837999999999999999999999996


No 26 
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00  E-value=0  Score=329.50  Aligned_cols=275  Identities=17%  Similarity=0.197  Sum_probs=227.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             77899998630485315998999999999852123433445642169999999999999989999996413887784342
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVL   97 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~   97 (310)
                      ++|+|+||+   ||+.+.+..+.+..|.++++....        +....+.+..+|+.+++++||++||++|||+||.| 
T Consensus         2 ~ik~y~eL~---kp~~~~l~~~t~~~g~~la~~~~~--------~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~in-   69 (280)
T PRK09573          2 SLKAYFELI---RPKNCLTASIGAFIGGLIASNFKI--------AHLKKLILAALVVFLVCAGGNIINDIYDIEIDRIN-   69 (280)
T ss_pred             CHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf             888999997---789999999999999999667776--------65999999999999999999999989989667314-


Q ss_pred             CCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3431010012332101100134431000345554444432100356544431166-555543320010100145663011
Q gi|254780205|r   98 RTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGIGFAGGVFVGW  176 (310)
Q Consensus        98 RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~~~~~~~l~g~  176 (310)
                       |++||+|+|+||++||+.+++.+..+|+.+.+++|+.++.++..+.++...|+. +||.++++++++|...+++++.||
T Consensus        70 -~~~RPlpsG~IS~~~A~~~~~~l~~~g~~l~~~~n~~~~~~~~~~~~l~~~Y~~~lK~~~~~~n~ii~~~~g~~~~~g~  148 (280)
T PRK09573         70 -KPNRPIPSGRISLNSAKVFSILLFIVGIILSLFINIYAFLIAVLNSILLYQYAKDLKKTGLIGNLIVALLTGLSFIFGG  148 (280)
T ss_pred             -CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             -8998688897079999999999999999999999999999999999999999999973757699999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHCCCH
Q ss_conf             14575432024688888742100357998887531000257203466542020466653378999999999-99835337
Q gi|254780205|r  177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVA-FCLLTVNF  255 (310)
Q Consensus       177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~  255 (310)
                      .++++..  ..+.+++..++|+.++|+++++||+|||+|+|+||+|+++|++..+.+...+.+........ .+....+.
T Consensus       149 ~a~~~~~--~~~~l~l~~f~~~~~~~~~~~~~d~e~D~~~Gv~tlPv~~G~~~t~~~i~~~~~l~~~~~~lp~~~g~~g~  226 (280)
T PRK09573        149 IAVGNVG--KTIILFLCAFFSTWSREIIKDIEDVEGDKKEGVITLPIKYGIKKSIYIAKILLVLLIVLSPLPYLLGIFGI  226 (280)
T ss_pred             HHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf             9981258--99999999999999999999999865699869943576327899999999999999999999999976509


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999-9998089997999999876459999999999999865
Q gi|254780205|r  256 FAWIGLLIALFLTIK-RIIALDISCSKQCCSFFHSAGVVGILILICLIISLFL  307 (310)
Q Consensus       256 ~~~~~~l~~~~~l~~-~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL  307 (310)
                      .|.....+....+.+ .+...+.++++++.|.+|.+..+..+.++++++|.+-
T Consensus       227 ~Yl~~~~~~~~~~l~~~~~l~~~~~~~~a~~~~~~~~~~m~l~lla~li~~l~  279 (280)
T PRK09573        227 YYLIVVVICDLLFILSIIILLRNPSKEGASKASKVIKIAMILGLIAFLLGSLP  279 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999999999858989999999999999999999999982058


No 27 
>PRK13593 consensus
Probab=100.00  E-value=0  Score=323.23  Aligned_cols=275  Identities=14%  Similarity=0.118  Sum_probs=222.5

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             05467789999863048531599899999999985212343344564216999999999999998999999641388778
Q gi|254780205|r   14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDID   93 (310)
Q Consensus        14 ~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD   93 (310)
                      ..-+++|+|+||+|   |.......+.+..|..++.....+         ...+.+...++++..++||++||++|||+|
T Consensus         3 ~~r~~ir~yleL~R---P~n~~~a~~~~~~G~~ia~~~~~~---------~~~~~~~~~~~~l~~aagn~iND~~D~eID   70 (283)
T PRK13593          3 HVRETIRGLVELMR---PGNAVAAGVLTFIGAFVAGGFAVT---------PAHVTGAVAATILATAAGNAINDYFDRAID   70 (283)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             28999999999971---889999999999999995899998---------899999999999999999999748765143


Q ss_pred             CCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             4342343101001233210110013443100034555444443210035654443116-655554332001010014566
Q gi|254780205|r   94 SQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYP-FSKRFILCPQVVLGIGFAGGV  172 (310)
Q Consensus        94 ~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp-~~KR~t~~p~~~lG~~~~~~~  172 (310)
                      +.|+  ++||+|||+||++||+.+++.+..+|....+.+|+.+..+++.+..+.+.|+ .+||.+..++++.|...+.++
T Consensus        71 ~iN~--P~RPIPsG~IS~~~Al~~~i~l~~~~~~l~~~l~~~~~~i~~~~~~~~~~Y~~~lK~~~~~gNi~v~~~~g~~~  148 (283)
T PRK13593         71 KINR--PDRPIPRGAVSPRGALVYSVFLFVAAVVLTSVLPLLAIVIAAMNLLALVAYTELFKGLPGVGNALVAYLTGSTF  148 (283)
T ss_pred             CCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             1038--99988888639999999999999999999999889999999999999999999995487500199999999999


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             30111457543202468888874210035799888753100025720346654202046665337899999999999835
Q gi|254780205|r  173 FVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLT  252 (310)
Q Consensus       173 l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~  252 (310)
                      +.||++++++.+...+.++...++||+++|+++++||+|||+++|+||+|+++|++..+.+...+.+.........+..+
T Consensus       149 l~G~~av~~~~~~~~~~l~~~~fl~t~~reiikdi~DieGD~~~G~~TLPv~~G~~~a~~ia~~~~i~~~~~s~lpy~~g  228 (283)
T PRK13593        149 LFGAAAVGRILAFGVVVLFALAALATAAREIIKDVEDLDGDRAEGLRTLPIVIGVTRALRVAAGFVVVAVIASPVPYLIG  228 (283)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999975888738999999999999999999999864219876997588162689999999999999999999999986


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -337999999999999999999808999799999987645999999999999986
Q gi|254780205|r  253 -VNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF  306 (310)
Q Consensus       253 -~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~l  306 (310)
                       .++.|.+..+.....+.+...+. .+|+.+++|.+|.+..++++   +++++.+
T Consensus       229 ~~g~~YLi~v~~~~~~~l~~~~~~-~~~~~~~~~~~K~~m~~~~i---aF~~g~l  279 (283)
T PRK13593        229 IFGWWYLVLVVPADMIMLIAVWRS-PDDPTQGQQLLKRGMFVAAA---AFVVGRL  279 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_conf             707999999999999999999866-46867899999999999999---9999777


No 28 
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00  E-value=0  Score=317.07  Aligned_cols=270  Identities=16%  Similarity=0.213  Sum_probs=221.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             77899998630485315998999999999852123433445642169999999999999989999996413887784342
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVL   97 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~   97 (310)
                      |+|+|+||+|   |....+..+.+..|..++..+.+         ....+.+...++++++++||++||++|||+|+.|+
T Consensus         2 ~lk~yleL~R---p~n~~~a~~~~~~g~~ia~~~~~---------~~~~~~l~~l~~~~~~aag~~iND~~D~eiD~iN~   69 (275)
T PRK12883          2 EVKAFIEIMR---PHNCILAGIVGILGSLVAYEGIP---------DIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINR   69 (275)
T ss_pred             CHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             6899999972---87789999999999999846899---------78999999999999999999998588884054558


Q ss_pred             CCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3431010012332101100134431000345554444432100356544431166-555543320010100145663011
Q gi|254780205|r   98 RTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGIGFAGGVFVGW  176 (310)
Q Consensus        98 RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~~~~~~~l~g~  176 (310)
                        ++||+|||++|++||+.+++.+..+|+.+.+++|+.++.+++.+.++.++|++ +||.+..+++..|...+.+++.|+
T Consensus        70 --p~RPipsG~IS~~~A~~~~~~l~~~g~~l~~~ln~~~~~l~~~~~~l~~~Ys~~lK~~~l~gNi~va~~~g~~~l~g~  147 (275)
T PRK12883         70 --PNRPLPRGAMSRKAALYYSVLQYAIGLALAYFLNIWAFLFALIAYVLTFIYAWKLKPLPFIGNVVVALLTAATPIYGA  147 (275)
T ss_pred             --CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             --999887776689999999999999999999997399999999999999998998665885599999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             14575432024688888742100357998887531000257203466542020466653378999999999998353379
Q gi|254780205|r  177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFF  256 (310)
Q Consensus       177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  256 (310)
                      .++ |+.+. .+.+....++|+.++|++|++||+|||++.|+||+|+++|++....+.....+........++..+.+..
T Consensus       148 ~a~-g~~~~-~~~l~~~afl~~l~reivkdieD~egD~~~G~~TlPi~~G~~~a~~ia~~~~~l~~~~s~lp~~~g~~~~  225 (275)
T PRK12883        148 VGV-GRIGL-AGYLAICAFLVNVSREIMKDIEDIEGDMAKGAKTLPIIIGKKRAAYIGAIFGFLTVIASFLPVKVGIGLG  225 (275)
T ss_pred             HHH-CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             995-75409-9999999999999999999999861098769957378946797999999999999999999999977399


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999808999-799999987645999999999999986
Q gi|254780205|r  257 AWIGLLIALFLTIKRIIALDISC-SKQCCSFFHSAGVVGILILICLIISLF  306 (310)
Q Consensus       257 ~~~~~l~~~~~l~~~i~~~~~~~-~~~~~k~Fk~n~~~g~ii~~~iild~l  306 (310)
                      |+..+.+....+.+++...++++ .++.+|.+|.|...|++   ++.++.+
T Consensus       226 y~~~i~v~~~~~~~~~~~~~~~~~a~~~~~~lk~~m~l~li---af~~g~l  273 (275)
T PRK12883        226 YLPIIPVDAMILKASIDVLRDPETAHKGQKLLKIATFLAVI---SFLIGAL  273 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_conf             99999999999999999964922269999999999999999---9999773


No 29 
>PRK13594 consensus
Probab=100.00  E-value=2.7e-40  Score=264.41  Aligned_cols=270  Identities=19%  Similarity=0.230  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             77899998630485315998999999999852123433445642169999999999999989999996413887784342
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVL   97 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~   97 (310)
                      ++|+|+||+|.   ....+-.+..+.|.+++....+.        .   ..+....+++..++|+++||++|+|+|+.|+
T Consensus         2 sl~ay~~L~Rp---~n~~~a~~~~~~g~~lA~~~~~~--------~---~~l~~~~v~~~~a~g~~iND~~D~eiD~iN~   67 (278)
T PRK13594          2 SVAAYLSIIRP---VNAVVAGLAAIIAYLIATGTLPA--------E---SLLLFCIVLLITGAGNVINDYFDKEIDAINR   67 (278)
T ss_pred             CHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             78999999449---88999999999999997588865--------8---8999999999999999999787860453459


Q ss_pred             CCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3431010012332101100134431000345554444432100356544431166-555543320010100145663011
Q gi|254780205|r   98 RTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGIGFAGGVFVGW  176 (310)
Q Consensus        98 RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~~~~~~~l~g~  176 (310)
                        |+||+|||++|+++|..++..+..+|+.+....|+.+..+.+...++..+|+. +||.....++..+...+..++.|.
T Consensus        68 --P~RPipsg~is~~~Al~~~~~l~~~g~~~~~~~~~~~~~i~l~~~~ll~~Ys~~LK~~~liGNi~Va~l~g~~~~fg~  145 (278)
T PRK13594         68 --PDRPIPSGQISPGGALAYAILLFLIGNAIAILTTPLCLGIALVNSVILILYAARLKKTPFLGNISVAYLAASIFLFGG  145 (278)
T ss_pred             --CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             --999888886299999999999999999999998099999999999999999999975672688999999889999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHCCCH
Q ss_conf             1457543202468888874210035799888753100025720346654202046665-337899999999999835337
Q gi|254780205|r  177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLF-ILYGIFVLCFMVAFCLLTVNF  255 (310)
Q Consensus       177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~  255 (310)
                      .++.+......+.++...|++++++|++.++||.|+|++.|++|+|+++|++....+. .+..+.+.+..+. +.. .+.
T Consensus       146 ~~~~~~~~~~~~~l~~~aFl~~l~REIvKDieDieGD~~~g~~TLPi~~G~kka~~~a~~~~~~~~~~s~lP-y~~-~g~  223 (278)
T PRK13594        146 AIAGTEGLLSMLPIAAITFLAMLARELLKDAEDIEGDRAHGARTLPMLIGVRKTIYLAFICATFAVLASLLP-YLW-WGA  223 (278)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHH
T ss_conf             997456418999999999999999999945530123887799740779718989999999999999999889-998-749


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_conf             9999999999999-99999808999799999987645999999---999999986
Q gi|254780205|r  256 FAWIGLLIALFLT-IKRIIALDISCSKQCCSFFHSAGVVGILI---LICLIISLF  306 (310)
Q Consensus       256 ~~~~~~l~~~~~l-~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii---~~~iild~l  306 (310)
                      .|+...++....+ +..+...+.+++++ .+..|.+.+.-...   ++++.++.+
T Consensus       224 ~Yl~~i~~~~~~~l~~~~~~l~~~~~~~-~~a~~~~~~lk~~m~~~l~aF~i~~l  277 (278)
T PRK13594        224 FYLAGIAVVDAVILFGAIRGLKCTTSEE-LIASNSTTILKAGMFASLLVFLLSAV  277 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999985079327-78888889999999999999998721


No 30 
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00  E-value=6.9e-40  Score=261.93  Aligned_cols=261  Identities=18%  Similarity=0.258  Sum_probs=194.6

Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             46778999986304853159989999999998521234334456421699999999999999899999964138877843
Q gi|254780205|r   16 GSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQ   95 (310)
Q Consensus        16 ~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~   95 (310)
                      .+.+++.+||+   ||+.|    +|..|+..+.+.+.+...+.........+.+...|. +++|.+|++||++|||+|++
T Consensus        18 ~~~~~~~l~l~---kPvTW----~p~~w~~~CG~~ssG~~~w~~~~~~~~~~g~~l~GP-l~~g~sq~iNDy~DreiDaI   89 (308)
T PRK07566         18 TSIPSARLQLM---KPITW----FPPMWAFLCGAVSSGAFGWTLENVLKLLAGMLLAGP-LLCGTSQTLNDYFDREVDAI   89 (308)
T ss_pred             CCCHHHHHHHC---CCCCC----CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCC
T ss_conf             74637886625---89745----660899864153068887756679999999997507-87440028988887530124


Q ss_pred             CCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC---C-CCCCCCCCCHHHHHHHH-H
Q ss_conf             42343101001233210110013443100034555444443210035654443116---6-55554332001010014-5
Q gi|254780205|r   96 VLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYP---F-SKRFILCPQVVLGIGFA-G  170 (310)
Q Consensus        96 ~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp---~-~KR~t~~p~~~lG~~~~-~  170 (310)
                      ||  ++||||||++|.+||+.+...++++|+.+.+.+|+..+.+++++.++..+|+   + +||..++++..+|+++- .
T Consensus        90 Ne--P~RPIPSG~is~~~a~~~~~~l~~l~~~~a~~L~p~~~~~~~~gl~la~~YSapPlRLK~~gw~Gn~~vg~sY~~l  167 (308)
T PRK07566         90 NE--PYRPIPSGAISLRWVLIQIAVLLVLGLAVAYLLGPWVFLAALVGLFLAWIYSAPPIRLKQNGWLGNYAVGLSYEGL  167 (308)
T ss_pred             CC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             58--8988876787899999999999999999999986799999999999999963777885336664019999999999


Q ss_pred             HHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             66301114575-4320246888887421003579988875310002572034665420204666533-789999999999
Q gi|254780205|r  171 GVFVGWGALHA-SFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFIL-YGIFVLCFMVAF  248 (310)
Q Consensus       171 ~~l~g~~av~g-~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~-~~~~~~~~~~~~  248 (310)
                      +-+.|.++.++ ..+++.+.+.+...+++.+.+|+++++|+|+|||.|++|+||++|+++...+... ..+.-.......
T Consensus       168 pw~~G~a~~~~~~p~~~i~~lAllysl~a~GImtlnDfKdiEGDr~~GlrSLPV~~G~~~Aa~iA~~~m~~~Q~~v~~~l  247 (308)
T PRK07566        168 PWWAGAAAFGAGQPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDIFQLAVIAYL  247 (308)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988998557788507999999999999999999632213552752987727241478899999999989999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             9835337999999999999999999808999799999987
Q gi|254780205|r  249 CLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFH  288 (310)
Q Consensus       249 ~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk  288 (310)
                      +..+......+.......++..|...+  +||++.--.+.
T Consensus       248 ~~~g~~~~a~~v~~ll~~Q~~~~~~ll--~dP~~~a~~Yn  285 (308)
T PRK07566        248 LAWGQPLYAAIVALLLIPQITLQDILL--RDPRERDVWYN  285 (308)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHH--HCHHHHCHHHC
T ss_conf             997547999999999999999999998--69787440110


No 31 
>KOG1380 consensus
Probab=100.00  E-value=2.6e-38  Score=252.28  Aligned_cols=278  Identities=20%  Similarity=0.169  Sum_probs=228.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67789999863048531599899999999985212343344564216999999999999998999999641388778434
Q gi|254780205|r   17 SAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQV   96 (310)
Q Consensus        17 ~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~   96 (310)
                      +.+++|+||.   ||+-..|.+.++..|+.++.....          +-.++...+|+.+.+++++++||++|...|+||
T Consensus        92 k~~~~y~eLs---K~rLT~LVV~tt~~gYalap~p~s----------~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM  158 (409)
T KOG1380          92 KYARCYLELS---KPRLTMLVVLTTMTGYALAPGPFS----------FPTLLYTTVGTGLCSASANAINQIFEPPFDSQM  158 (409)
T ss_pred             CHHHHHHHHC---CCCEEEEEEEECCCCCCCCCCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             0588998746---550688874612343111566878----------303689864168877636766543168712656


Q ss_pred             CCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             23431010012332101100134431000345554-444432100356544-4311665555433200101001456630
Q gi|254780205|r   97 LRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQ-FNPFVICVGFALLFI-SLLYPFSKRFILCPQVVLGIGFAGGVFV  174 (310)
Q Consensus        97 ~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~-ln~~~~~l~~~~~~~-~~iYp~~KR~t~~p~~~lG~~~~~~~l~  174 (310)
                      +||++||+|+|++|+.+|+.|+.+....|..++++ .|+++..+|...+++ ..+|+.+||....+..++.+.++.||+|
T Consensus       159 ~RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTPlKrihiinTWvGavVGAIPPLM  238 (409)
T KOG1380         159 KRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTPLKRIHIINTWVGAVVGAIPPLM  238 (409)
T ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             76416664447657378889998861555111101536788887312021000003623341013437777752377411


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11145754320246888887421003579988875310002572034665420204666533789999999999983533
Q gi|254780205|r  175 GWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVN  254 (310)
Q Consensus       175 g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      ||+|.+|.++..+++|....+.|+..|....++.-++||+|+|.+|++++-..- .+....-|.++..-+....-..+..
T Consensus       239 GwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l-~rr~alr~s~a~~~L~~~~~~~~lT  317 (409)
T KOG1380         239 GWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGL-CRRVALRYSLAFLPLSYAAPSTDLT  317 (409)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             034303677840889998998830630666544301135534678999656431-1678999888885230025435765


Q ss_pred             HHHH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7999--99999999999999980899979999998764599999999999998652
Q gi|254780205|r  255 FFAW--IGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       255 ~~~~--~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
                      .++|  -+..+..++.+...+..+.+|-++..|.|..|....-++++.+++.+.-+
T Consensus       318 ~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhLP~lmll~l~~k~~~  373 (409)
T KOG1380         318 TWWFAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHLPLLMLLMLIHKKGR  373 (409)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             51246434207699999988874365434689999999998999999999875212


No 32 
>pfam01040 UbiA UbiA prenyltransferase family.
Probab=100.00  E-value=1.8e-35  Score=234.98  Aligned_cols=245  Identities=22%  Similarity=0.323  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCC
Q ss_conf             89999999998521234334456421699999999999999899999964138877843423431010012332101100
Q gi|254780205|r   37 AVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALV  116 (310)
Q Consensus        37 l~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~  116 (310)
                      ...|.++|..++......         .........+..+++.++|++||++|+|+|++|+||++||+|+|++|+++|..
T Consensus         4 ~~~~~l~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~Rpl~~g~is~~~~~~   74 (258)
T pfam01040         4 ALLPVLAGLALAAGGALD---------LLLLLLLLLALLLLQAAGNVLNDYFDREIDADNPNKPSRPLPSGRISPREALL   74 (258)
T ss_pred             HHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             999999999998579999---------99999999999999999999984851841866777888877899977999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             134431000345554444432100356544431166--555543320010100145663011145754320246888887
Q gi|254780205|r  117 FAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF--SKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGT  194 (310)
Q Consensus       117 ~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~--~KR~t~~p~~~lG~~~~~~~l~g~~av~g~~~~~~~~L~~~~  194 (310)
                      ++..+..+|..+....|+.+..++....+..++|+.  +||.+.++++..|++++.++++||.+++++.+.+++.+....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ys~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T pfam01040        75 LALALLLLGLLLALLLGPLLLLLGLLGLLLGLLYSLPRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPL  154 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99999999999999999999999999999999994464134687662102239889999999998088869999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             42100357998887531000257203466542020466653378999999999998353379999999999999999998
Q gi|254780205|r  195 IFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIA  274 (310)
Q Consensus       195 ~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~  274 (310)
                      ++|+......++++|+|+|++.|.+|+|+++|++............................+..........+......
T Consensus       155 ~~~~~~~~~~~~~~D~e~D~~~g~~tl~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  234 (258)
T pfam01040       155 FLLGLAILLANDIRDVEGDRKAGRRTLPVRLGEKRALALLALLLAAALLLLALLLLLLAPLLLLLAVLLAALALLRALRL  234 (258)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999703578799879985163477776999999999999999999999987899999999999999999999


Q ss_pred             HCCCCHHHHHHHHHHH
Q ss_conf             0899979999998764
Q gi|254780205|r  275 LDISCSKQCCSFFHSA  290 (310)
Q Consensus       275 ~~~~~~~~~~k~Fk~n  290 (310)
                      .+.++++++.+.++..
T Consensus       235 ~~~~~~~~~~~~~~~~  250 (258)
T pfam01040       235 LRRRNPEEPARLALFL  250 (258)
T ss_pred             HHCCCHHHHHHHHHHH
T ss_conf             7259988999999999


No 33 
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase; InterPro: IPR006372   These are a subfamily of a large family of polyprenyltransferases that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.; GO: 0030494 bacteriochlorophyll biosynthetic process.
Probab=100.00  E-value=1.3e-33  Score=223.67  Aligned_cols=259  Identities=15%  Similarity=0.231  Sum_probs=189.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             899998630485315998999999999852123433445----6421699999999999999899999964138877843
Q gi|254780205|r   20 APYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVL----GWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQ   95 (310)
Q Consensus        20 ~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~----~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~   95 (310)
                      |.-+||+   ||+.|    +|-.|+.++.+.+.+.....    ......-+++.+..|.. +.|-.=++||++|||+|+.
T Consensus         1 ~~~l~L~---~PvTW----~~p~w~~~CGA~asG~~~g~dWtr~e~~~~~LlGmllaGPL-~tG~sQ~~Ndy~DR~vDAi   72 (295)
T TIGR01476         1 RARLELM---KPVTW----IPPIWAVLCGAVASGALRGSDWTRVEKWLLLLLGMLLAGPL-LTGLSQSVNDYFDRDVDAI   72 (295)
T ss_pred             CCCCCCC---CCCCC----HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCC
T ss_conf             9620026---87333----43699998666660333687655523489999999875145-4103777643315654663


Q ss_pred             CCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCC-------CCCHHHHHHHHHHCC---C-CCCCCCCCCHHH
Q ss_conf             42343101001233210110013443100034555444443-------210035654443116---6-555543320010
Q gi|254780205|r   96 VLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFV-------ICVGFALLFISLLYP---F-SKRFILCPQVVL  164 (310)
Q Consensus        96 ~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~-------~~l~~~~~~~~~iYp---~-~KR~t~~p~~~l  164 (310)
                      ||  ++||||||+||.+|+....+++..+|..+.+.++...       ..+.+.+++++.+|+   . +||..|+.+--+
T Consensus        73 Ne--P~RpIPsG~iS~~~~~~~~~vL~~~~~~va~~LG~~~qhdfPi~~~~~~~G~~~A~~YS~~PikLK~~GWlG~~~v  150 (295)
T TIGR01476        73 NE--PQRPIPSGAISLREVLILILVLTVAGLAVALVLGNWLQHDFPIIVLFTVVGVVLALIYSLPPIKLKRNGWLGPALV  150 (295)
T ss_pred             CC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf             77--3558988600678999999999999999998726643332269999999999999997046301243556007899


Q ss_pred             HHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHH-HHHHHHH
Q ss_conf             100145663011145754--3202468888874210035799888753100025720346654202046665-3378999
Q gi|254780205|r  165 GIGFAGGVFVGWGALHAS--FSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLF-ILYGIFV  241 (310)
Q Consensus       165 G~~~~~~~l~g~~av~g~--~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~-~~~~~~~  241 (310)
                      |+++-.=+-++..|+-+.  +++....+.+..-+-..|--++.++.-.|+|||.|+||+||.+|.++...+. .....+-
T Consensus       151 g~sY~~L~W~AGha~fa~GaL~~~~vvvALlys~~A~Gi~~lNDfKSveGDr~lGl~SLpV~~G~~~aa~~~~~~~~~~q  230 (295)
T TIGR01476       151 GLSYEGLPWMAGHAVFAPGALTFEIVVVALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMLGVKVAAKLAVTTIDVFQ  230 (295)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99974567899999860379851558898899887616677732452015113463201103124667899998999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999999998353379999999999999999998089997999999876
Q gi|254780205|r  242 LCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHS  289 (310)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~  289 (310)
                      +.........+.....-+..+..+...+.|...+ .+||++..-.|+.
T Consensus       231 ~~v~~ll~~wG~~~~A~~v~~lLvAq~~~~~~~f-lr~p~~n~v~Y~~  277 (295)
T TIGR01476       231 ILVIGLLLIWGQPLVATIVLLLLVAQIIAQAKLF-LRDPEENEVKYNA  277 (295)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCEEH
T ss_conf             9999999983237899999999843366424864-2686447530101


No 34 
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00  E-value=2e-34  Score=228.73  Aligned_cols=253  Identities=16%  Similarity=0.218  Sum_probs=187.6

Q ss_pred             HCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             10546778999986304853159989999999998521234334456421699999999999999899999964138877
Q gi|254780205|r   13 CIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDI   92 (310)
Q Consensus        13 ~~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~di   92 (310)
                      .....|+|+.+||+   ||+.|    +|..|+..+.+.+.+.............++....|.. +.|.+-++||++|||+
T Consensus         6 ~g~t~k~k~~LqLl---KPVTW----iPpmWa~~CGavsSG~~~~~~~~~l~~l~~mlLaGPL-~~G~SQtiNDwyDReV   77 (331)
T PRK12392          6 LGFVDKIRAHLELL---DPVTW----ISVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPL-GTGFSQSVNDYFDLEL   77 (331)
T ss_pred             CCCCHHHHHHEEEC---CCCCC----CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCH-HHCHHHHHHHHHHHCC
T ss_conf             76104266410203---88543----6736977532430378787545799999999982626-5251578777765212


Q ss_pred             CCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCC--------CCCCHHHHHHHHHHC---CC-CCCCCCCC
Q ss_conf             8434234310100123321011001344310003455544444--------321003565444311---66-55554332
Q gi|254780205|r   93 DSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPF--------VICVGFALLFISLLY---PF-SKRFILCP  160 (310)
Q Consensus        93 D~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~--------~~~l~~~~~~~~~iY---p~-~KR~t~~p  160 (310)
                      |+.||  ++||+|||+||.+|+....++++.++..+.+.+...        .+...+.+++++.+|   |+ +||..|+.
T Consensus        78 DAINE--P~RPIPSGrIs~~~~l~~~~i~~lla~~l~~~lg~~~~~~~~~~i~~a~l~Gl~~A~iYSAPPlrLK~nGW~G  155 (331)
T PRK12392         78 DRVNE--PTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTS  155 (331)
T ss_pred             CCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
T ss_conf             11269--9999999877478799999999999999999972254033206999999999999998718805544335545


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHH-HHHHHH
Q ss_conf             0010100145663011145754320246888887421003579988875310002572034665420204666-533789
Q gi|254780205|r  161 QVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL-FILYGI  239 (310)
Q Consensus       161 ~~~lG~~~~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i-~~~~~~  239 (310)
                      +..+|+++..=+.....|+.++..++...+.....+=..+.-|+......|+||+.|+||+||.+|.++..++ .....+
T Consensus       156 n~avG~SY~~LpW~tG~Alf~~l~p~iv~lAlLYslga~GImtlNDFKSvEGDr~~Gl~SLPV~~G~~~A~wI~~~~IDl  235 (331)
T PRK12392        156 APAVGFSYGFITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL  235 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf             39999998789999999986568829999999999886266432033223461652944326454354217777899989


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999983533799999999999999999980
Q gi|254780205|r  240 FVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIAL  275 (310)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~  275 (310)
                      ....+.+..+..++....|..+......+..|+..+
T Consensus       236 ~f~~~~~l~~~w~f~~~~~~~~~~l~~~~~~q~~l~  271 (331)
T PRK12392        236 VFAVFAWLAWSWGFTVLMYFILVGLVLNIVIQIQLY  271 (331)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf             999999999973319999999999998761477887


No 35 
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.95  E-value=1.7e-27  Score=186.51  Aligned_cols=265  Identities=18%  Similarity=0.195  Sum_probs=165.0

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~   94 (310)
                      +.+-+++..+-+|.|.-+|+-+-.   .....++....++....  . ....+....+-..++...-+-+||++||||||
T Consensus        10 ~~~~l~a~~~FsRPhTiiGT~l~v---~~~~l~a~~~~~~~~~~--~-~~~~~l~~~~a~l~~NiyiVGlNq~~D~eIDk   83 (309)
T PRK12887         10 MMPWLYALWKFSRPHTIIGTSLSV---LGLYLIAIAVSSNSFAL--T-NLGLLLGAWVACLCGNVYIVGLNQLTDIEIDR   83 (309)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHHHHCCCCCCH--H-HHHHHHHHHHHHHHHCHHEEEHHHHHHHHHHH
T ss_conf             666899999873847999899999---99999997516763338--9-99999999999995132033101466554131


Q ss_pred             CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC----CCCCCCCCCHHH----HH
Q ss_conf             3423431010012332101100134431000345554444432100356544431166----555543320010----10
Q gi|254780205|r   95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF----SKRFILCPQVVL----GI  166 (310)
Q Consensus        95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~----~KR~t~~p~~~l----G~  166 (310)
                      .||  ++||+|||++|.++|........++|+.+.+.+++..+....++.++...|+.    +||+-++.....    |.
T Consensus        84 INk--P~lPIpSG~is~~~g~~iv~~~~~lsl~la~~lg~~l~~~~~i~l~lg~aYS~PpLRlKr~~~~aalcI~~vrg~  161 (309)
T PRK12887         84 INK--PHLPLAAGEFSRRQGQIIVIITGILALILAALLGPWLLLTVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGV  161 (309)
T ss_pred             CCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf             268--899888777668889999999999999999997078999999999999998078466543323777887776779


Q ss_pred             HHHHHHHH--CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHH-HHHHHHHH
Q ss_conf             01456630--111-457543202468888874210035799888753100025720346654202046665-33789999
Q gi|254780205|r  167 GFAGGVFV--GWG-ALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLF-ILYGIFVL  242 (310)
Q Consensus       167 ~~~~~~l~--g~~-av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~-~~~~~~~~  242 (310)
                      ..++|...  .++ ...+..+.+.+++.....+.+.+..+..+++|+|+||+.|++|+|+++|++....+. .+...+..
T Consensus       162 iv~lg~~~~~~~~~~~~~~~~~~i~~~t~f~~~fa~~Iai~KDipDIEGDr~~GI~Tl~V~LG~k~v~~l~~~ll~~~Y~  241 (309)
T PRK12887        162 IVNLGLFLHFQWLLQGPVEIPPPVWVLTLFVLVFTFAIAIFKDIPDMEGDRQYNITTFTLRLGKQRVFKLSCWVLTACYL  241 (309)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99889999999997577778837999999999999999998157423432751976543475389999999999999999


Q ss_pred             HHHHHHHHHCCCH--HH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9999999835337--99-999999999999999980899979999998
Q gi|254780205|r  243 CFMVAFCLLTVNF--FA-WIGLLIALFLTIKRIIALDISCSKQCCSFF  287 (310)
Q Consensus       243 ~~~~~~~~~~~~~--~~-~~~~l~~~~~l~~~i~~~~~~~~~~~~k~F  287 (310)
                      .....+......+  .. ..+-.+....+.++.+.+|.+++++-.+++
T Consensus       242 ~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~~~~~vdl~~k~~i~sfY  289 (309)
T PRK12887        242 GMIAVGLLFLPSINSAFLIVSHLLLLALLWWRSQRVDLEDKSAIAQFY  289 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             999999972466888999999999999999997307853468999999


No 36 
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.94  E-value=3.5e-25  Score=172.42  Aligned_cols=280  Identities=18%  Similarity=0.116  Sum_probs=190.9

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--C
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887--7
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD--I   92 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~d--i   92 (310)
                      -.+++|+|++++|   |...-.-+.|.+.|..+|...    +..    ......+..+++.+...+++.+||++|.+  .
T Consensus         5 ~~~~lk~w~~a~R---p~tl~~s~~pvllG~alA~~~----g~f----~~~~~~l~ll~~~~~q~~~N~~NDY~D~~~G~   73 (300)
T PRK06080          5 QMSTFQAWLELAR---PKTLPAAFAPVLVGTALAYWL----GSF----HPLLALLALIAALLLQIAVNLANDYGDYVKGT   73 (300)
T ss_pred             CCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC----CCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             5657999999972---788999999999999999986----983----69999999999999999999988687886477


Q ss_pred             CCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHHHHCCCC-CCC--CCCCCHHHH
Q ss_conf             8434234310100123321011001344310003----455544444321003565444311665-555--433200101
Q gi|254780205|r   93 DSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISF----VLLLQFNPFVICVGFALLFISLLYPFS-KRF--ILCPQVVLG  165 (310)
Q Consensus        93 D~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~----~~~~~ln~~~~~l~~~~~~~~~iYp~~-KR~--t~~p~~~lG  165 (310)
                      |..+.+++.|++++|.+|++|+...+..+..++.    .+.+..++....++..+....+.|+.. +|.  +.+..+..+
T Consensus        74 D~~~~~g~~r~i~~g~is~~~~~~~~~~~~~~a~~~G~~l~~~~g~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGei~v~  153 (300)
T PRK06080         74 DTEDRVGPLRAIGRGLISPKQVKRAAIAFFGLAALLGLLLALASGWWLLLVGLLCIAAAILYTGGPKPYGYTGLGELFVF  153 (300)
T ss_pred             CCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             74314688424515896899999999999999999999999996579999999999999997279863445664217899


Q ss_pred             HHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf             00145663-01114575432024688888742100357998887531000257203466542020466653378999999
Q gi|254780205|r  166 IGFAGGVF-VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCF  244 (310)
Q Consensus       166 ~~~~~~~l-~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~  244 (310)
                      +.+|.-+. .++-..++++++.+++......+++...-.+..++|+|+|+++|.+|+|+++|++................
T Consensus       154 ~~~G~l~v~g~~y~qt~~~~~~~~l~s~p~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~k~a~~l~~~l~~~~yl~  233 (300)
T PRK06080        154 VFFGLVAVLGTYYLQAGTVDSAVFLPAVPCGLLAGAVLLANNIRDIETDRENGKNTLAVRLGDVNARRLHAILLALAYLC  233 (300)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             99507999999999936867999999989999898999984642017799869931673466177999999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999983533799999999999999999980-8999799999----98764599999999999998
Q gi|254780205|r  245 MVAFCLLTVNFFAWIGLLIALFLTIKRIIAL-DISCSKQCCS----FFHSAGVVGILILICLIISL  305 (310)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~-~~~~~~~~~k----~Fk~n~~~g~ii~~~iild~  305 (310)
                      .......+..+++....++......+..+.+ +.+++++-..    .-+.+..+|.++.++++++.
T Consensus       234 ~~~~~~~~~~p~~~ll~ll~lP~a~~~~~~~~~~~~~~~l~~~l~~ta~~~~~~~il~~igllLs~  299 (300)
T PRK06080        234 IILLALLGLASPWVLLFLLALPLAVKAARPVLRKQKPATLIPALKATGKTALLFGLLFAIGLLLSQ  299 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999875169999999999999999999985588487999999999999999999999999822


No 37 
>TIGR02056 ChlG chlorophyll synthase, ChlG; InterPro: IPR011799    This entry represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources . Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP)..
Probab=99.92  E-value=5.4e-25  Score=171.30  Aligned_cols=263  Identities=17%  Similarity=0.210  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67789999863048531599899999999985212343344564216999999999999998999999641388778434
Q gi|254780205|r   17 SAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQV   96 (310)
Q Consensus        17 ~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~   96 (310)
                      +++|--++|+   ||+.|    .|-+||..+.+...++..+......-...++...|..+. |-.-++||++|||||+.|
T Consensus        14 ~~Wkirlql~---kP~tW----~Pl~WGvvCGaa~sGn~~W~~e~v~k~~~Cm~~sGP~lt-Gytqt~nd~ydr~idain   85 (306)
T TIGR02056        14 SKWKIRLQLT---KPVTW----IPLVWGVVCGAAASGNYTWSLEDVLKAILCMLLSGPLLT-GYTQTLNDFYDREIDAIN   85 (306)
T ss_pred             CEEEEEEEEE---CCCCC----CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHCCHHHHC
T ss_conf             1245676652---57321----113322220132567521158999999999886041010-045666655301012312


Q ss_pred             CCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCC-------CCCCCCHHHHHHHHHHC---CC-CCCCCCCCCHHHH
Q ss_conf             2343101001233210110013443100034555444-------44321003565444311---66-5555433200101
Q gi|254780205|r   97 LRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFN-------PFVICVGFALLFISLLY---PF-SKRFILCPQVVLG  165 (310)
Q Consensus        97 ~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln-------~~~~~l~~~~~~~~~iY---p~-~KR~t~~p~~~lG  165 (310)
                      |  +.||+|||++|..|...-..++...|+.+...++       |....+++.+.++.++|   |+ +|+..|..+.-+|
T Consensus        86 e--PyrPiPsGais~P~v~tq~~~l~~~G~~~a~~ld~WaGh~~P~v~~lal~Gs~~~~iysaPPlklkqnGW~Gn~alG  163 (306)
T TIGR02056        86 E--PYRPIPSGAISVPEVVTQVVLLLLAGLAVAFILDLWAGHETPTVTVLALFGSLLAYIYSAPPLKLKQNGWLGNYALG  163 (306)
T ss_pred             C--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             7--78778876556616999999999967788776643116677500013467789888760886211126530104341


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             00145663011145754320246888887421003579988875310002572034665420204666533789999999
Q gi|254780205|r  166 IGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFM  245 (310)
Q Consensus       166 ~~~~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~  245 (310)
                      .++-.-|.-+..|..|++++....+-+...+-.+|-..+..+...|+||+.|++|+|+.||.++..++.....=..-...
T Consensus       164 asyi~lPWWaG~alfG~l~~~~~vltl~ys~aGlGiaivndfksveGdr~lGlqslPv~fG~~ta~WiCv~~id~~q~~~  243 (306)
T TIGR02056       164 ASYIALPWWAGQALFGELTPDVVVLTLLYSLAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAKWICVVAIDVTQLLV  243 (306)
T ss_pred             HHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             23432001311023111123566777788884122210110010122022030110034400002211135567888889


Q ss_pred             HHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             9999835337999-99999999999999980899979999998764
Q gi|254780205|r  246 VAFCLLTVNFFAW-IGLLIALFLTIKRIIALDISCSKQCCSFFHSA  290 (310)
Q Consensus       246 ~~~~~~~~~~~~~-~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n  290 (310)
                      ..........+|- ....+.......|...+ .+||-+.--.+..+
T Consensus       244 a~yl~~~~~~~ya~~lv~liiPqi~fq~~yf-l~dP~k~dvkyqas  288 (306)
T TIGR02056       244 AAYLLAIGKNLYALILVLLIIPQIVFQDKYF-LKDPLKYDVKYQAS  288 (306)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHCCCCCCC
T ss_conf             8888861340799999999720576644555-40402320000013


No 38 
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.89  E-value=6.6e-22  Score=152.51  Aligned_cols=278  Identities=14%  Similarity=0.124  Sum_probs=186.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67789999863048531599899999999985212343344564216999999999999998999999641388778434
Q gi|254780205|r   17 SAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQV   96 (310)
Q Consensus        17 ~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~   96 (310)
                      ++.|.|+.-+|   |...-.-..|.+.|..+|....++   .    ......++.+++.+...+.|..|||+|.+-+.-.
T Consensus         2 ~~~k~~~~a~R---P~tl~asi~pv~lG~a~A~~~~g~---f----~~~~~ll~ll~~~l~q~~~Nl~NDY~D~~~G~D~   71 (296)
T PRK05951          2 TRDKEFFIQTR---PWSFVMTIISTSFGYSYGFYLIGS---F----DPLLSWAILLGCVLLHASANVLNDYFDYVLGIDT   71 (296)
T ss_pred             CCHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHCCC---C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             50889999967---037699999999999999997698---7----5999999999999999999985618888457756


Q ss_pred             -CCCC--CHHHHCCCCCHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHHHHCC---C-CCCCCCCCCHHHH
Q ss_conf             -2343--10100123321011001344310003455----5444443210035654443116---6-5555433200101
Q gi|254780205|r   97 -LRTR--SRPLPSGQCTRFQALVFAVLQFLISFVLL----LQFNPFVICVGFALLFISLLYP---F-SKRFILCPQVVLG  165 (310)
Q Consensus        97 -~RT~--~RPl~sG~is~~~A~~~~~~l~~l~~~~~----~~ln~~~~~l~~~~~~~~~iYp---~-~KR~t~~p~~~lG  165 (310)
                       +|..  .|++.+|.+|+++....++.+..+++.+.    ...++....++..+.+..+.|+   + .|+ ..++.+..+
T Consensus        72 ~~~~~~~~~~i~~g~ls~~~v~~~~~~~~~~a~~~G~~L~~~~~~~~l~lg~~g~~~~~~YTggP~~l~y-~gLGel~v~  150 (296)
T PRK05951         72 RETTGYRPHPIIAGIMSLGNVRVLGIALGCIALQLGGALFLDRRPLAVLLALLGVFLLYCYMGPPFNLKY-RALGELLVF  150 (296)
T ss_pred             CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHH
T ss_conf             7667888536883797899999999999999999999999985599999999999999998179976656-661079999


Q ss_pred             HHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf             00145-66301114575432024688888742100357998887531000257203466542020466653378999999
Q gi|254780205|r  166 IGFAG-GVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCF  244 (310)
Q Consensus       166 ~~~~~-~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~  244 (310)
                      ++++. ++..++-..+|+++..+++..+..-+.+..--.+.-+.|+|+|+++|.+|+|+++|++................
T Consensus       151 i~fG~l~v~g~~y~qtg~~~~~~~l~s~p~gll~~~IL~~Nn~rD~e~D~~~Gk~Tl~v~lG~~~a~~~~~~l~~~~y~~  230 (296)
T PRK05951        151 IAWGHLMVLGLIYVWTGNISSPNVLAGVPLGLLVAAVLLANNLRDIEDDERLGAPTLAVIFGRKSAVALYAFALLSPYLI  230 (296)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf             99899999999999918776999999999999999999987862215499769976487867575999999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998353379999999999---999999998089997999999876459999999999999865
Q gi|254780205|r  245 MVAFCLLTVNFFAWIGLLIAL---FLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFL  307 (310)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~---~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL  307 (310)
                      .......+.-+++-...++..   .-+..+...-..++  ...+.=|-|..+|.++.++++++.+.
T Consensus       231 ~~~~~~~~~~p~~~ll~lltlPla~~l~~~~~~~~~~~--~~~~T~~l~~~fg~l~~~g~lls~l~  294 (296)
T PRK05951        231 LVILVIAILLPLISLWALLTLPVAYALCLWQSRKFPHD--ADPATAQIFMVFGYLYILGTLLSKLV  294 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999986605999999999999999999997525455--53899999999999999999999872


No 39 
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.89  E-value=3.4e-22  Score=154.23  Aligned_cols=224  Identities=12%  Similarity=-0.031  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCC----CCCCCHHHHHHHHH
Q ss_conf             99999899999964138877843423431010012332101100134431000345554444----43210035654443
Q gi|254780205|r   73 GAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNP----FVICVGFALLFISL  148 (310)
Q Consensus        73 G~~~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~----~~~~l~~~~~~~~~  148 (310)
                      -+++.-.+|.++||+.|+|.|+.|+  ++|+...+++|.+.|..+...+...+....+..+.    .....-........
T Consensus        54 ~~~l~~aagYiIN~~~D~e~D~IN~--P~r~~~~~~is~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  131 (297)
T PRK12872         54 ITFLLALSVYSINYLTDLDEDRINN--PERVEFLKKIGEKLAYNFFFLAVLGVYLGAYLSSVIMRPAFASIFILGIIYLY  131 (297)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHCCC--CCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998725640220311341479--86233101003999999999999999999999999998999999999999999


Q ss_pred             HCC-CCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             116-65555433200101001456630-1114575432024688888742100357998887531000257203466542
Q gi|254780205|r  149 LYP-FSKRFILCPQVVLGIGFAGGVFV-GWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFS  226 (310)
Q Consensus       149 iYp-~~KR~t~~p~~~lG~~~~~~~l~-g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G  226 (310)
                      +|+ .+||.....++..|...+.+++. +-.....+.+......+.-.++-+...|.+.+++|.|+|++.|+||+|+.+|
T Consensus       132 ~Ys~~LK~ip~~gNl~va~l~a~~~~~~~i~~~~~~~~~~i~~~a~F~fl~~lireivkDi~di~GD~~~g~~TlPi~~G  211 (297)
T PRK12872        132 LYKRRLKQIPLFKNLLVALVWGLSITILPVLYGGLATDSALLLVAAFAFLKNFVNTIVFDIKDIEGDRNSGLKTLPIILG  211 (297)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEECHHHH
T ss_conf             98999863510889999999999999999999934300899999999999999999971575131548669831483523


Q ss_pred             H-CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0-20466653378999999999998353379999999999999999998089997999999876459999999999
Q gi|254780205|r  227 Y-QTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICL  301 (310)
Q Consensus       227 ~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~i  301 (310)
                      + +++..+..+.................+...+.............+...+.+++++...   -++..-.+++.|+
T Consensus       212 ~~~tk~ii~~l~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~l~~~~i~l~~a~~~~~y~~---l~~~lK~iil~Gv  284 (297)
T PRK12872        212 KRRTLRFLTILNLLPLALLVLGVYTGVFPTGLYLLLFPLSAYVFFYIKITKADRKPLFLY---LSVDGEWVLLAGL  284 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHHHHHH
T ss_conf             588999999999999999999999988769999999999999999999998276678999---9999999999999


No 40 
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.89  E-value=1.3e-21  Score=150.73  Aligned_cols=162  Identities=20%  Similarity=0.245  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67789999863048531599899999999985212343344564216999999999999998999999641388778434
Q gi|254780205|r   17 SAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQV   96 (310)
Q Consensus        17 ~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~   96 (310)
                      +.+|+|++++|.|+.+...+++.|...+--.-          +. ..+....+.++.-.++.|+..++||+.|+|-||++
T Consensus         2 ~~~~~~~~~lRp~qWiKN~lvf~p~~~~~~~~----------~~-~~~~~~~~~F~~F~l~aS~vYi~NDi~D~~~Dr~H   70 (288)
T PRK12324          2 NLLAGYLKLLRPKQWIKNVFVFAAPIFAGRLL----------NL-EVLLKVLLAFVLFCLASSAVYLVNDIRDVEADRLH   70 (288)
T ss_pred             CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             36999999969899999999999999805404----------78-99999999999999999999999837547520568


Q ss_pred             CCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             23431010012332101100134431000345554444432100356544431166-55554332001010014566301
Q gi|254780205|r   97 LRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGIGFAGGVFVG  175 (310)
Q Consensus        97 ~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~~~~~~~l~g  175 (310)
                      ++.|+||+|||++|.++|..++.++..+++..++.+|+........-..+.+.|++ +||....-...++..|-.-+..|
T Consensus        71 p~Kk~RPiASG~is~~~a~~~~~~l~~~~~~~~~~~~~~~~~~l~~Y~~l~~~YS~~LK~i~ilDv~~ia~gf~lRv~aG  150 (288)
T PRK12324         71 PTKRFRPIASGVVSVSLAYILAVVLLVASLILAYLLSPKLALVLLVYLALNLAYSFKLKHQPVLDVFCIASGFVLRAIAG  150 (288)
T ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             35346855556746889999999999999999997579999999999999999999986599999999998999999987


Q ss_pred             CCCCCCCCCHHHHHHH
Q ss_conf             1145754320246888
Q gi|254780205|r  176 WGALHASFSWPAFFLC  191 (310)
Q Consensus       176 ~~av~g~~~~~~~~L~  191 (310)
                      ..++.  .+.+.|++.
T Consensus       151 ~~~~~--i~~S~Wll~  164 (288)
T PRK12324        151 GVAIG--VPLSPWLLL  164 (288)
T ss_pred             HHHHC--CCCCHHHHH
T ss_conf             98817--998899999


No 41 
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.89  E-value=2e-21  Score=149.53  Aligned_cols=279  Identities=12%  Similarity=0.152  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCC
Q ss_conf             77899998630485315998999999999852123433445642169999999999999989999996413887--7843
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD--IDSQ   95 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~d--iD~~   95 (310)
                      ++|.++|++|   |..--.-+.|.+.|..++....++       ..+....++++++.+...+.+.+||++|.+  .|++
T Consensus         2 sl~~w~~~~R---p~tl~asv~PvllG~a~a~~~~~~-------f~~~~~ll~ll~~~~~qi~~N~~NDY~D~~~G~D~~   71 (317)
T PRK13387          2 SAKLFLKLVE---IHTKIASFFPVILGTLFSLYYVAK-------IDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTA   71 (317)
T ss_pred             CHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             7899999876---777899999999999999996698-------779999999999999999998766255650377875


Q ss_pred             CCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHHHHCCCC-CCC--CCCCCHHHHHHH
Q ss_conf             423431010012332101100134431000345----5544444321003565444311665-555--433200101001
Q gi|254780205|r   96 VLRTRSRPLPSGQCTRFQALVFAVLQFLISFVL----LLQFNPFVICVGFALLFISLLYPFS-KRF--ILCPQVVLGIGF  168 (310)
Q Consensus        96 ~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~----~~~ln~~~~~l~~~~~~~~~iYp~~-KR~--t~~p~~~lG~~~  168 (310)
                      ..+.++|++.+|.+|+++....+..+..++..+    .+..++....++..+....+.|+.. ++.  +.++.+..|+++
T Consensus        72 ~~~g~~~~i~~g~ls~~~v~~~~~~~~~~a~i~Gl~L~~~tg~~~l~iG~~~~~~~~~YT~gP~pl~y~glGEi~v~~~~  151 (317)
T PRK13387         72 DYVGIGNGIGQHGLKPKNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTM  151 (317)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             44588860057997999999999999999999999999984379999999999997643279966477672279999998


Q ss_pred             HHHHHHC-CCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             4566301-1145754320246--------------------888887421003579988875310002572034665420
Q gi|254780205|r  169 AGGVFVG-WGALHASFSWPAF--------------------FLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSY  227 (310)
Q Consensus       169 ~~~~l~g-~~av~g~~~~~~~--------------------~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~  227 (310)
                      |..+..+ +-..+++.+...+                    ...+...+.+..--.+.-+.|+|+|+|+|-+|+|++.|+
T Consensus       152 G~~~v~~~~yv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~slp~~ll~~~IL~~NN~rD~e~D~~~gk~TL~v~lG~  231 (317)
T PRK13387        152 GFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR  231 (317)
T ss_pred             HHHHHHHHHHEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEEECH
T ss_conf             89998887413304454023311232000110036689999998889999999998565751366997698017989885


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf             2046665337899999999999835337999999999999999999808--99979999----99876459999999999
Q gi|254780205|r  228 QTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALD--ISCSKQCC----SFFHSAGVVGILILICL  301 (310)
Q Consensus       228 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~--~~~~~~~~----k~Fk~n~~~g~ii~~~i  301 (310)
                      +.......................+.-+++....++.........+.+.  .++|++..    +.-+.|..+|.++.+++
T Consensus       232 ~~a~~~y~~l~~~ayl~ii~~v~~g~~p~~~ll~ll~~P~~~k~~~~~~~~~~k~~~~~~~~k~t~~~~~~~gll~~~g~  311 (317)
T PRK13387        232 EKGVVLFAVLFYASYLAIAVIVLMGYISPWALVSFLTLRKPISNIQSFQKEAKDPKYFRIAIKNTVLTNTTFGFLLSASL  311 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77999999999999999999999855239999999999999999999985699906899999999999999999999999


Q ss_pred             HHHHH
Q ss_conf             99986
Q gi|254780205|r  302 IISLF  306 (310)
Q Consensus       302 ild~l  306 (310)
                      +++++
T Consensus       312 ll~~l  316 (317)
T PRK13387        312 LIQYL  316 (317)
T ss_pred             HHHHH
T ss_conf             99862


No 42 
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.85  E-value=2.4e-20  Score=143.06  Aligned_cols=264  Identities=19%  Similarity=0.231  Sum_probs=157.6

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCC
Q ss_conf             054677899998630485315998999999999852123433445642169999999999--999989999996413887
Q gi|254780205|r   14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVG--AIVTRGAACTWNDLVDHD   91 (310)
Q Consensus        14 ~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G--~~~~r~ag~~~Nd~~D~d   91 (310)
                      .+.+.+|.-+.   .+||+-|.-..+|...|+++++.....        .+....+++.-  -.+|.|    +||++|+|
T Consensus         4 ~~~~~l~~l~~---~SRP~~Winta~p~~~g~~l~~~~~~~--------~~~~~~i~flvP~Nl~mYG----INDvfD~e   68 (291)
T PRK13105          4 GMMELIRQILL---SSRPLSWVNTAYPFAAAYLLTAGEIDW--------LFWLGTVFFLIPYNLAMYG----INDVFDYE   68 (291)
T ss_pred             CHHHHHHHHHH---HCCCCCCCCCHHHHHHHHHHHCCCCCH--------HHHHHHHHHHHHHHHHHHC----CHHHHHHH
T ss_conf             08899999998---468731103226899999997254558--------9999999999878888734----20333213


Q ss_pred             CCCCCCCCCCHHHHCCCCCHH--HCCCHHHHHHHHHCCC-CC-CCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHH
Q ss_conf             784342343101001233210--1100134431000345-55-4444432100356544431166-55554332001010
Q gi|254780205|r   92 IDSQVLRTRSRPLPSGQCTRF--QALVFAVLQFLISFVL-LL-QFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGI  166 (310)
Q Consensus        92 iD~~~~RT~~RPl~sG~is~~--~A~~~~~~l~~l~~~~-~~-~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~  166 (310)
                      .|.+|+|...|+=+.  +++.  ...+.......+-++. +. ..++.+...-....++...|+. --|+..-| +.-++
T Consensus        69 sD~~NPRKgg~Ega~--l~~~~~r~~l~~~~~~~~pfl~~l~~~~~~~~~~~l~~~~f~~vaYSaPpLRFKe~P-~LDS~  145 (291)
T PRK13105         69 SDLRNPRKGGVEGAV--LPKASHRPLLWASAITTIPFLVVLVIAGTWMSWAVLAVSVFAVIAYSAAGLRFKERP-FLDAL  145 (291)
T ss_pred             HHCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCC
T ss_conf             102388878866301--470015503599999866899999981778899999999999850258860346665-53211


Q ss_pred             H----HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HCHHHHHHHHHHHHH
Q ss_conf             0----14566301114575432024688888742100357998887531000257203466542-020466653378999
Q gi|254780205|r  167 G----FAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFS-YQTKLWLFILYGIFV  241 (310)
Q Consensus       167 ~----~~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G-~~~~~~i~~~~~~~~  241 (310)
                      +    +-.+...|.+....+.+.+.|..-.+.++|.++-++.-|+||+|.||++|+.|+++.+| +.+.++...+|.++.
T Consensus       146 ss~~~~v~pa~~~~~l~g~~~~~~~~~~~~a~~lW~masHaF~AvqDI~~DR~aGI~siAT~lGargt~~~a~~~y~~Aa  225 (291)
T PRK13105        146 TSSTHFTSPALYGLTLAGATFTPALWIALGAFFLWGMASQAFGAVQDVVADREAGLSSIATVLGARGTVRLAVLLYLLAA  225 (291)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf             22115644899999980788881479999999999999877403356650143191323435421589999999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHHHHCCCCHHHH---HHHHHHHHH-HHHHHHHHH
Q ss_conf             999999998353379999999999999--999998089997999---999876459-999999999
Q gi|254780205|r  242 LCFMVAFCLLTVNFFAWIGLLIALFLT--IKRIIALDISCSKQC---CSFFHSAGV-VGILILICL  301 (310)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~~~~l--~~~i~~~~~~~~~~~---~k~Fk~n~~-~g~ii~~~i  301 (310)
                      .++..      .++......+.....+  ....+++..+++++.   +|.|-..++ .|.++..-+
T Consensus       226 ~l~~~------~~~P~~~aa~~~l~yl~~~~~~~~~~d~~~e~Anr~wr~fl~ln~~~G~vvt~~L  285 (291)
T PRK13105        226 VLMLF------TPWPGWIAAILALPYILNAARFWNITDTDAEQANRGWKRFLWLNYLVGFVVTMLL  285 (291)
T ss_pred             HHHHH------CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99985------6881899999999999987265047789988886679999999999999999999


No 43 
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.83  E-value=9.9e-19  Score=133.17  Aligned_cols=282  Identities=15%  Similarity=0.082  Sum_probs=175.7

Q ss_pred             HCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             10546778999986304853159989999999998521234334456421699999999999999899999964138877
Q gi|254780205|r   13 CIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDI   92 (310)
Q Consensus        13 ~~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~di   92 (310)
                      .+-|++.|.+++-+|   |...-.-+.|.+.|..+|.....       ........++.+++.+...+.|.+||++|.+-
T Consensus         6 ~~~~s~~k~W~~A~R---P~tL~as~~PvlvG~alA~~~~g-------~f~~~~~ll~ll~~~llqi~~Nl~NDY~D~~~   75 (304)
T PRK07419          6 SMSPSRRKLWKAAIK---PPMYSVAIMPILVGTAWALGEGG-------VFRLDQFIGFLLAAILILAWENLSNDVFDAET   75 (304)
T ss_pred             CCCCCHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             889748999999877---63789999999999999998589-------86699999999999999999998751546525


Q ss_pred             --CCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHHHHCCC-CCCC--CCCCCHH
Q ss_conf             --8434234310100123321011001344310003455----54444432100356544431166-5555--4332001
Q gi|254780205|r   93 --DSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL----LQFNPFVICVGFALLFISLLYPF-SKRF--ILCPQVV  163 (310)
Q Consensus        93 --D~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~----~~ln~~~~~l~~~~~~~~~iYp~-~KR~--t~~p~~~  163 (310)
                        |+..    .++..+..-++++....+.....++....    ..-++....++..+.+..+.|+- -+|.  ..+..+.
T Consensus        76 G~D~~~----~~~~~~~~~~~~~v~~~~~~~l~~~~~~g~~l~~~~g~~ll~lg~~~~~~~~~Yt~~P~~l~y~glGe~~  151 (304)
T PRK07419         76 GIDVNK----FHSVVNLTGNRSLVFWLANLFLLLGLLGILAIALQSDWTVLALVLLCCFLGYLYQGPPFRLGYQGLGEPL  151 (304)
T ss_pred             CCCCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             887566----7887677788899999999999999999999984544999999999999988636898467766502799


Q ss_pred             HHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             0100145-663011145754320246888887421003579988875310002572034665420204666533789999
Q gi|254780205|r  164 LGIGFAG-GVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVL  242 (310)
Q Consensus       164 lG~~~~~-~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~  242 (310)
                      .++.+|. ++...+-..+++.++.++...+..-+.+..--.+.-++|+|.|+++|-++++|++|++..............
T Consensus       152 v~~~fG~l~v~g~~y~q~~~~~~~~~~~s~~~gll~~~iL~~Nn~rD~e~D~~~gk~Tl~v~lG~~~a~~~~~~l~~~~y  231 (304)
T PRK07419        152 CWLAFGPLATAAALYSQTPSWSLIPWAASLILGLATTLILFCSHFHQVEDDLAAGKRSPVVRLGTARGAQLLPWFVGLIY  231 (304)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf             99998799999999998285559999999999999999999766741131797598505778771889999999999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999835337999999999999999999808--99979999---9-98764599999999999998652
Q gi|254780205|r  243 CFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALD--ISCSKQCC---S-FFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~--~~~~~~~~---k-~Fk~n~~~g~ii~~~iild~lL~  308 (310)
                      .........+.-+++-...++.........+.++  .++|+.-.   + .=|.+...|.++.++++++.+++
T Consensus       232 ~~~~~~~~~g~~p~~~ll~ll~lPla~~~~~~v~~~~~~p~~l~~~~~~t~~~~~l~giLl~iGllls~ll~  303 (304)
T PRK07419        232 ALELLPVLLGFWPWTTLLSLISLPFAIALIRLVRRNHDQPERISNSKFLAVRFQFLSGLLLSLGLILAYLLP  303 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999997051699999999999999999999984898999987899999999999999999999996637


No 44 
>PRK08238 hypothetical protein; Validated
Probab=99.82  E-value=2.9e-19  Score=136.39  Aligned_cols=169  Identities=21%  Similarity=0.260  Sum_probs=129.4

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~   94 (310)
                      -+.++|+|++.+|.|+.+...+++.|.+.+--+.          +.. .+....+.++.-.+..|+..++||+.|+|-||
T Consensus       189 ~~~~~~~~lk~lRphQW~KNllvF~Pl~~a~~~~----------~~~-~~~~~~~aF~~Fsl~ASsvYi~NDl~D~e~DR  257 (481)
T PRK08238        189 APPSLRTWLKALRVHQWLKNLLVFVPLLAAHDFG----------DLQ-AVLAALLAFLAFSLCASAVYILNDLLDLEADR  257 (481)
T ss_pred             CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC----------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9867999999869899988689999998724205----------899-99999999999999996989886086787541


Q ss_pred             CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             3423431010012332101100134431000345554444432100356544431166-555543320010100145663
Q gi|254780205|r   95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGIGFAGGVF  173 (310)
Q Consensus        95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~~~~~~~l  173 (310)
                      +.+|.|+||++||++|.++|...+.++..+|+.+.+.+|+....+......+...|++ +||....-...++.-|.+-++
T Consensus       258 ~Hp~Kr~RP~ASG~ls~~~~~~~~~~ll~~~~~~a~~~~~~f~~~l~~Y~~lt~~YS~~LK~i~iiDv~~la~~f~lRii  337 (481)
T PRK08238        258 AHPRKRRRPFASGALPIPFGLAAAPVLLLAALALALALSPAFLLVLLAYLVLTLAYSLRLKRKALIDVLTLAGLYTLRII  337 (481)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             68624569777788898899999999999999999996799999999999999999999754267589999989999998


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             01114575432024688888742
Q gi|254780205|r  174 VGWGALHASFSWPAFFLCIGTIF  196 (310)
Q Consensus       174 ~g~~av~g~~~~~~~~L~~~~~~  196 (310)
                      .|..|+  +++.+.|++....++
T Consensus       338 aG~~a~--~i~~S~WLl~fs~f~  358 (481)
T PRK08238        338 AGAVAV--GVALSFWLLAFSMFF  358 (481)
T ss_pred             HHHHHC--CCCCCHHHHHHHHHH
T ss_conf             526230--778749999999999


No 45 
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.82  E-value=4e-19  Score=135.55  Aligned_cols=258  Identities=17%  Similarity=0.192  Sum_probs=156.7

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9863048531599899999999985212343344564216999999999--99999899999964138877843423431
Q gi|254780205|r   24 YLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIV--GAIVTRGAACTWNDLVDHDIDSQVLRTRS  101 (310)
Q Consensus        24 ~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~--G~~~~r~ag~~~Nd~~D~diD~~~~RT~~  101 (310)
                      +|.+.+||+-|.-...|...|+.+++......-.    +......+++.  .-.+|.|    +||++|+|.|.+|+|.-.
T Consensus        10 ~Ll~~SRP~~WvnTagp~~~g~~la~~~~~~~~~----~~~~~~~i~Fl~PyNllmYG----INDvfD~esD~~NPRKGG   81 (281)
T PRK12875         10 YLFRLSRPRFWLYLGGPVVVGVAYGATTVGELFS----PAAVLLFLYFLFPANIFLYG----VNDWFDADTDETNPKKDG   81 (281)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCC----HHHHHHHHHHHHHHHHHHHC----CCHHHHHHHCCCCCCCCC
T ss_conf             9999667068886130899999995566134428----89999999998777788734----423332121034887667


Q ss_pred             HHHHCCCCCHHHCCCHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHH---HHHHHHHHCC
Q ss_conf             01001233210110013443-1000345554444432100356544431166-55554332001010---0145663011
Q gi|254780205|r  102 RPLPSGQCTRFQALVFAVLQ-FLISFVLLLQFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGI---GFAGGVFVGW  176 (310)
Q Consensus       102 RPl~sG~is~~~A~~~~~~l-~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~---~~~~~~l~g~  176 (310)
                      |.   |+...+....-.+.. ..+.+..+..++..+........++...|+. --|+..-|-+ -++   .+..|...|+
T Consensus        82 ~E---~~~~~~~~~~~~v~~~~~~~~~f~l~~~~~~~~~l~~~~f~~~~YSappLRFKerP~L-DS~Sn~~yv~P~v~~~  157 (281)
T PRK12875         82 RE---VRYRGDAAVAAIVVLTGALSLLFLAPLPLAGWPYLLAFLFLSYEYSAPPLRFKTTPVL-DSLSNGLYILPGIAAY  157 (281)
T ss_pred             CC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHHHHH
T ss_conf             33---3457874457999998799999998503889999999999998613885255665030-0002023650699999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             14575432024688888742100357998887531000257203466542-02046665337899999999999835337
Q gi|254780205|r  177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFS-YQTKLWLFILYGIFVLCFMVAFCLLTVNF  255 (310)
Q Consensus       177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  255 (310)
                      +.++|+.+  ++..-.+.++|.++-++.-|.||+|.||++|+.|+|+..| ++|..+...++.++..++.....-.+.- 
T Consensus       158 al~~g~~p--~~~~l~a~~lW~ma~HaF~AvqDI~~DR~aGI~T~AT~LGar~T~~~~~~~wl~aa~~~~~~~~p~~~~-  234 (281)
T PRK12875        158 ALASGALP--PLAAVAAGWLWAMGMHTFSAIPDIEPDRAAGIQTTATFLGRRRALAYCAGCWLLAAAVFAFVDVPFSLL-  234 (281)
T ss_pred             HHHCCCCC--CHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHH-
T ss_conf             98526775--199999999999998773445777401332840000144433689999999999999996036308999-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf             999999999999999999808999799999987-645999999999999
Q gi|254780205|r  256 FAWIGLLIALFLTIKRIIALDISCSKQCCSFFH-SAGVVGILILICLII  303 (310)
Q Consensus       256 ~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk-~n~~~g~ii~~~iil  303 (310)
                            ......+...+...+ -+.++.++.|- -|...|++++++.+-
T Consensus       235 ------~l~yp~~~~~~~~~~-~~~~ray~~fpaiN~~~G~~~tl~~lw  276 (281)
T PRK12875        235 ------LLIYPVLVFAILLLG-IAIDRAYWWYPAVNTAVGMLLTLGALW  276 (281)
T ss_pred             ------HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------999999999996165-423368999899998999999999999


No 46 
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.80  E-value=1.1e-17  Score=126.75  Aligned_cols=282  Identities=15%  Similarity=0.126  Sum_probs=186.0

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf             054677899998630485315998999999999852123433445642169999999999999989999996413887--
Q gi|254780205|r   14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD--   91 (310)
Q Consensus        14 ~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~d--   91 (310)
                      ...++.+.++|++|   |...-.-+.|.+.|..+|.....       ...++...++++++.+....-+.+|||.|.+  
T Consensus         3 ~~~~~~~~wl~~~r---P~Tl~aai~Pv~~G~a~A~~~~~-------~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG   72 (303)
T COG1575           3 QKTSKTQLWLELAR---PKTLPAAIAPVIVGTALAFWYGK-------SFNLLVALLALIAAILLQILVNLANDYFDYKKG   72 (303)
T ss_pred             CCCHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             56179999998648---64017889999999999999746-------538999999999999999999987762234227


Q ss_pred             CCC--CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCC----CCCCCCCCCHHHHHHHHHHCCC-CCCCCCCC--CH
Q ss_conf             784--342343101001233210110013443100034555----4444432100356544431166-55554332--00
Q gi|254780205|r   92 IDS--QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLL----QFNPFVICVGFALLFISLLYPF-SKRFILCP--QV  162 (310)
Q Consensus        92 iD~--~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~----~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p--~~  162 (310)
                      .|.  ...+++++-+.+++++++.++.+...+...+..+..    ..|+..+.++..+....+.|+. -|+..+.|  .+
T Consensus        73 ~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi  152 (303)
T COG1575          73 TDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEI  152 (303)
T ss_pred             CCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHH
T ss_conf             78898741246654313458888999999999999999999999974469999999999730101369967466778899


Q ss_pred             HHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-HHHHHHHHHHHH
Q ss_conf             10100145663-0111457543202468888874210035799888753100025720346654202-046665337899
Q gi|254780205|r  163 VLGIGFAGGVF-VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQ-TKLWLFILYGIF  240 (310)
Q Consensus       163 ~lG~~~~~~~l-~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~-~~~~i~~~~~~~  240 (310)
                      ..|+++|+-.. ..+-.-++++++..+...+.+.+-+..--...-+.|+|+|+|+|-+|+|++.|++ .+.....++...
T Consensus       153 ~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a  232 (303)
T COG1575         153 FVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVA  232 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf             99999989999999999616410898999999999999999862133450178669601134625475899999999999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-HH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999835337999999999999999999808999-79----9999987645999999999999986
Q gi|254780205|r  241 VLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISC-SK----QCCSFFHSAGVVGILILICLIISLF  306 (310)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~-~~----~~~k~Fk~n~~~g~ii~~~iild~l  306 (310)
                      ..+...........+.. ....+.....+...+.+..++ +.    .+...=+.|...+.+++++++++.+
T Consensus       233 ~l~~~~~~i~~~~~~~~-ll~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~l  302 (303)
T COG1575         233 YLAIVIFVILGLFPVWG-LLFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILLSQL  302 (303)
T ss_pred             HHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999996221799-99999999999999999861683477799999999999999999999999963


No 47 
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.78  E-value=1.6e-18  Score=131.93  Aligned_cols=273  Identities=19%  Similarity=0.140  Sum_probs=159.4

Q ss_pred             HHHCCCHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf             5410546778-99998630485315998999999999852123433445642169999999999--99998999999641
Q gi|254780205|r   11 RDCIMGSAIA-PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVG--AIVTRGAACTWNDL   87 (310)
Q Consensus        11 ~~~~~~~~i~-~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G--~~~~r~ag~~~Nd~   87 (310)
                      +.|..|+.+. +--+|.+.+||+-|.-...|...|+++++....      .  ....+.+++.-  -.+|.|    +||+
T Consensus         8 ~~~~~~~~~~~~Lr~L~~~SRP~~WinTa~p~~~g~~l~g~~~~------~--~~v~l~i~fl~PyNl~mYG----INDv   75 (298)
T PRK13595          8 MMRIAPSGIGLPLRRLLLISRPVLWINTIGSGVVGVWLTGHLFT------L--GVLPLLLWLTLPFNLLIYG----LNDI   75 (298)
T ss_pred             HHHCCCCCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHCCCCC------H--HHHHHHHHHHHHHHHHHHC----CCHH
T ss_conf             87328864517899999845742333005689999999725477------8--9999999999887888744----4212


Q ss_pred             CCCCCCCCCCCCCCHHHHCCCCCHHHC--CCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCH
Q ss_conf             388778434234310100123321011--00134431000345--554444432100356544431166-5555433200
Q gi|254780205|r   88 VDHDIDSQVLRTRSRPLPSGQCTRFQA--LVFAVLQFLISFVL--LLQFNPFVICVGFALLFISLLYPF-SKRFILCPQV  162 (310)
Q Consensus        88 ~D~diD~~~~RT~~RPl~sG~is~~~A--~~~~~~l~~l~~~~--~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~  162 (310)
                      +|+|.|.+|+|.....  -.++++++.  .+.+.....+-+++  +...++.+...-....++.+-|+. --|+..-|-+
T Consensus        76 fD~esD~~NPRKGg~E--Ga~l~~~~~r~~l~a~~~~~~pf~~~l~~~~~~~~~~~L~~~~~~~~aYSappLRFKerP~L  153 (298)
T PRK13595         76 ADQETDAANPRKGSWE--GARIRPGEVRPIARAVLLLNAPFLLYFALVLPPAANAALLLYAAVFVGYSLPPLRFKARPFL  153 (298)
T ss_pred             HHHHHCCCCCCCCCCC--CCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             2212014588756745--50344023661238999970589999998468889999999999998404885345666552


Q ss_pred             HHHH---HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HCHHHHHHHHHH
Q ss_conf             1010---014566301114575432024688888742100357998887531000257203466542-020466653378
Q gi|254780205|r  163 VLGI---GFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFS-YQTKLWLFILYG  238 (310)
Q Consensus       163 ~lG~---~~~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G-~~~~~~i~~~~~  238 (310)
                       -++   .+..++..+..+.++.   +++..-.+.++|.++-++.-|.||+|.||++|+.|+|+.+| +.|..+...++.
T Consensus       154 -DS~sn~~y~~p~~~~~lalg~~---~~~~al~a~~lW~ma~HaF~AvqDI~~DR~AGI~T~AT~lGaRgT~~~~~~~~l  229 (298)
T PRK13595        154 -DSLSNAAYALPLVLVPLALGAP---PVWPALLGLMAWSVAKHAFDAVQDIVEDREAGIRTVAVRLGVRGTALWSGAWWI  229 (298)
T ss_pred             -CHHCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf             -0120045767899999980588---428999999999999877344566740033385123435430589999999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999983533799999999999999999980899979999---9987-645999999999999986521
Q gi|254780205|r  239 IFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCC---SFFH-SAGVVGILILICLIISLFLDQ  309 (310)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~---k~Fk-~n~~~g~ii~~~iild~lL~~  309 (310)
                      ++..++......     .......+...+...+   .+.+++++..   +.|- .|-..|.+..+-++.+....+
T Consensus       230 lA~~l~~~~~~p-----~a~~~~~~~~~~~~~~---~~d~~~e~A~r~wr~fla~n~v~G~v~~~lLi~~l~~g~  296 (298)
T PRK13595        230 LAGALFAPVSRP-----VAAALWAIAGGLALAL---LRRPRPETGHRLYRLSIAFPYIAGTVAGVLLVYALARGG  296 (298)
T ss_pred             HHHHHHHCCCHH-----HHHHHHHHHHHHHHHH---HCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999998365227-----8999999999999999---728986777413413453777999999999999998157


No 48 
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase; InterPro: IPR011937    This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I . The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility..
Probab=98.73  E-value=5.7e-07  Score=61.61  Aligned_cols=249  Identities=18%  Similarity=0.168  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHHHHCCCCCHHHC
Q ss_conf             8999999999852123433445642169999999999999989999996413887--78434234310100123321011
Q gi|254780205|r   37 AVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD--IDSQVLRTRSRPLPSGQCTRFQA  114 (310)
Q Consensus        37 l~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~d--iD~~~~RT~~RPl~sG~is~~~A  114 (310)
                      -+.|-..|...+-....       ..-.+.+.+|.+++.+.-.-=|-=||++|-|  ||+    -|---++.=.=+++..
T Consensus        14 Av~Pi~~g~A~a~~~~g-------~~~~~~f~~FL~aaililaW~NLtNDvFDs~TGiD~----~K~HS~V~LTG~r~lv   82 (293)
T TIGR02235        14 AVMPILVGTAVALGKGG-------VVHLDRFVLFLIAAILILAWINLTNDVFDSDTGIDR----FKLHSIVNLTGSRSLV   82 (293)
T ss_pred             HHHHHHHHHHHHHHCCC-------CEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCCCCEEEECCCHHHH
T ss_conf             89988999899987077-------300488999999999999998406762124567551----0144435641640689


Q ss_pred             CCHHHHHHHHHCCCCCCCCC-----CCCCCHHHHHHHHHHC---CCCCCCCCCC--CHHHHHHHH-HHHHHCCCCCCC--
Q ss_conf             00134431000345554444-----4321003565444311---6655554332--001010014-566301114575--
Q gi|254780205|r  115 LVFAVLQFLISFVLLLQFNP-----FVICVGFALLFISLLY---PFSKRFILCP--QVVLGIGFA-GGVFVGWGALHA--  181 (310)
Q Consensus       115 ~~~~~~l~~l~~~~~~~ln~-----~~~~l~~~~~~~~~iY---p~~KR~t~~p--~~~lG~~~~-~~~l~g~~av~g--  181 (310)
                      ...+-+.+.+|.+....+..     ..+.+...+.++...|   ||  |-.+..  ..+=-+||| ++...++-+.++  
T Consensus        83 ~~~~n~~Ll~Gl~~i~~ls~~~~D~~Vl~Lv~~~cfLGY~YQGPPF--RLGY~GLGEpiC~~~FGPlA~AAA~~~q~~~~  160 (293)
T TIGR02235        83 FWLANFFLLIGLVGIAALSWRSQDITVLALVGLCCFLGYLYQGPPF--RLGYQGLGEPICWLAFGPLAIAAALYAQSQSV  160 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999999998886238999999999997530378742--44410313899998750899999998726552


Q ss_pred             -CCCHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             -43202468888----87421003579988--87531000257203466542-020466653378999999999998353
Q gi|254780205|r  182 -SFSWPAFFLCI----GTIFWVVYFDTVYA--HQDKKDDELIGVNSTARLFS-YQTKLWLFILYGIFVLCFMVAFCLLTV  253 (310)
Q Consensus       182 -~~~~~~~~L~~----~~~~Wt~~~dtiYa--~~D~edD~k~GikSlav~~G-~~~~~~i~~~~~~~~~~~~~~~~~~~~  253 (310)
                       +.+..+|.-.+    +.-.||.-  ..|+  .--+|||+++|=||-=|++| ++..+.+. ..+.......+.....|+
T Consensus       161 ~~~~~~~w~~~i~~G~G~~~~Ttl--iLFCsHFHQv~dD~a~GK~sP~VRLGt~~~A~~~~-w~~~~~Y~~~~~~v~~G~  237 (293)
T TIGR02235       161 ISFSLIPWKAAILVGAGSALATTL--ILFCSHFHQVEDDLAHGKRSPVVRLGTKRAAKIVP-WVILLLYVVLLIAVIGGF  237 (293)
T ss_pred             CEEEHHHHHHHHHHCCCHHHHHHH--HHHHHCCCCHHHHHHCCCCCCEEECCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf             023113578788843716899999--99842346416787438988721013555888999-999999999999998626


Q ss_pred             CHHHHHHHHHHH---HHHHHHHHHHCCCCHHHH--HH--HHHHHHHHHHHHHHHHH
Q ss_conf             379999999999---999999998089997999--99--98764599999999999
Q gi|254780205|r  254 NFFAWIGLLIAL---FLTIKRIIALDISCSKQC--CS--FFHSAGVVGILILICLI  302 (310)
Q Consensus       254 ~~~~~~~~l~~~---~~l~~~i~~~~~~~~~~~--~k--~Fk~n~~~g~ii~~~ii  302 (310)
                      -++--...+.+.   ..++....... ++||.-  .|  +-|...+=|+.+.+|..
T Consensus       238 ~P~~~LL~l~s~P~A~~Li~~~~~~h-~~P~~i~n~KFiA~~fh~~sG~lL~~G~~  292 (293)
T TIGR02235       238 LPWTTLLALASLPWAVKLIRLLKQNH-NKPEQIKNSKFIAVRFHFLSGILLTLGLL  292 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             46999999960038999999998753-58504541379999999999999999973


No 49 
>KOG4581 consensus
Probab=98.70  E-value=1.8e-08  Score=70.79  Aligned_cols=278  Identities=14%  Similarity=0.130  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCC
Q ss_conf             778999986304853159989999999998521234334456421699999999999999899999964138--877843
Q gi|254780205|r   18 AIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVD--HDIDSQ   95 (310)
Q Consensus        18 ~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D--~diD~~   95 (310)
                      |.+.|+--.|   |-..--..-|++-|..++...-.   ..+.......++  -.....+.+||+..|.++|  +.||++
T Consensus        60 k~~syllalr---pws~sasl~p~~lgsalayrs~~---~~d~~l~~~fl~--a~avlavh~agnlvntyfdf~kgid~k  131 (359)
T KOG4581          60 KCASYLLALR---PWSFSASLTPTALGSALAYRSHG---AEDFRLATFFLC--AFAVLAVHCAGNLVNTYFDFIKGIDHK  131 (359)
T ss_pred             HHHHHHHHHC---CCCCCCCCCHHHHHHHHHHHHCC---CCCHHHHHHHHH--HHHHEEEECCCCHHHHHHHHHHCCCCC
T ss_conf             9987876316---44232333647666478776425---444168998887--755224411564235466665333333


Q ss_pred             CCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCC---CCCCCCCC----CCCHHHHHHHHHHCCCCC--CCCCCCCHHHHH
Q ss_conf             423431010012332101100134431000345---55444443----210035654443116655--554332001010
Q gi|254780205|r   96 VLRTRSRPLPSGQCTRFQALVFAVLQFLISFVL---LLQFNPFV----ICVGFALLFISLLYPFSK--RFILCPQVVLGI  166 (310)
Q Consensus        96 ~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~---~~~ln~~~----~~l~~~~~~~~~iYp~~K--R~t~~p~~~lG~  166 (310)
                      -.  .+|-++...+.+.+..-++.++..+|...   +..++|.-    ..+-+.++--.++|+-.-  ++..+..++.=+
T Consensus       132 ka--ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyialgdliili  209 (359)
T KOG4581         132 KA--DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILI  209 (359)
T ss_pred             CC--CCHHHHHHHCCHHHEEHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCEEEEE
T ss_conf             44--3055888725831130134799970404899999578766435355210575543267546652787406789887


Q ss_pred             HH-HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             01-45663011145754320246888887421003579988875310002572034665420204666533789999999
Q gi|254780205|r  167 GF-AGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFM  245 (310)
Q Consensus       167 ~~-~~~~l~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~  245 (310)
                      .| ..+++.+++..+|++.+.++.-.+..-+-|-+.-.-....|.|.|+++|+-++++..|+....++...   ....-.
T Consensus       210 ~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~---llf~py  286 (359)
T KOG4581         210 LFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAM---LLFAPY  286 (359)
T ss_pred             EECHHHHHHHHHHHCCCEEEEEEHHEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHH---HHHHHH
T ss_conf             60519999999986286158761110110013577760588755434511472899976466388999999---999899


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998353379999999999999999998-08999--79999998764599999999999998652
Q gi|254780205|r  246 VAFCLLTVNFFAWIGLLIALFLTIKRIIA-LDISC--SKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       246 ~~~~~~~~~~~~~~~~l~~~~~l~~~i~~-~~~~~--~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
                      ......+...-.+..+-....-+..|+.+ ++++.  .+-.++.-|-|..+|+....++...+-++
T Consensus       287 ~lf~i~~~~~si~~~lplltip~afqiek~frneqa~~~lp~qtakln~~~gi~yv~~~~~ahqlp  352 (359)
T KOG4581         287 LLFFIFALHCSISFALPLLTIPMAFQIEKQFRNEQAFHKLPQQTAKLNFFFGIFYVFACCCAHQLP  352 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999988899887477413267769998621766644406666688899999999999724477


No 50 
>PRK13592 ubiA prenyltransferase; Provisional
Probab=98.55  E-value=1.2e-05  Score=53.55  Aligned_cols=183  Identities=15%  Similarity=0.232  Sum_probs=97.9

Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC-CC-CCCC---
Q ss_conf             996413887784342343101001233210110013443100034555444443210035654443116-65-5554---
Q gi|254780205|r   83 TWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYP-FS-KRFI---  157 (310)
Q Consensus        83 ~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp-~~-KR~t---  157 (310)
                      +.+|--|.|.|++..  ++||+|||+||++|-...+++..++.......+++.....-     +..+|- +| |-|.   
T Consensus        64 IaDEFKDyE~D~ryr--p~RplPrG~VtlkdL~i~g~~~~ai~i~l~~lf~~~il~~~-----~v~iY~~LM~~eFF~~e  136 (299)
T PRK13592         64 IADDFKDYETDRRLF--PHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFL-----FLYIYGTLMSFWFFKRD  136 (299)
T ss_pred             HHHHHCCHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-----HHHHHHHHHHHHHCCHH
T ss_conf             875630466787508--77889867664999999999999999999999844458899-----99999999999974399


Q ss_pred             CC-CCHHHHHHHHHH--HHH-----CC--CCCCCC-CCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             33-200101001456--630-----11--145754-3202468----888874210035799888753100025720346
Q gi|254780205|r  158 LC-PQVVLGIGFAGG--VFV-----GW--GALHAS-FSWPAFF----LCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTA  222 (310)
Q Consensus       158 ~~-p~~~lG~~~~~~--~l~-----g~--~av~g~-~~~~~~~----L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSla  222 (310)
                      |. .+..+-+.--.+  +++     ++  ..-.+. .+.+.++    +|.....|.++.-+     ...||+..++ |=.
T Consensus       137 wL~k~l~lylvSHm~Im~li~lyiisf~~~~~~lp~~~~~~~l~~~t~yf~gli~EI~RKi-----raPeeE~e~V-TYS  210 (299)
T PRK13592        137 KIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKI-----RAPKDETEYV-TYS  210 (299)
T ss_pred             HHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHC-----CCCCCCCCCC-EEE
T ss_conf             8722642687661689999999999998860589875157999999997054449876222-----7984466770-120


Q ss_pred             HHHHH-CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             65420-204666533789999999999983533799999999999999999980899979
Q gi|254780205|r  223 RLFSY-QTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSK  281 (310)
Q Consensus       223 v~~G~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~  281 (310)
                      -.||. +...++...+..-...-..  ...+.+.+....+.+...++-+|-..+. ++|+
T Consensus       211 kLfG~kka~~~~~~l~~~d~~t~~~--l~~~~s~~~v~~l~~~~~w~~~~~~~f~-k~pt  267 (299)
T PRK13592        211 KLFGYKKATRFIEVVTLLDILTNFA--LLWNISHVGVVVLVLNVIWMTVQFEQFI-KSPT  267 (299)
T ss_pred             HHCCCCCCEEEEEHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
T ss_conf             2204566147772899999999999--9987788999999998999630188871-4964


No 51 
>PRK13591 ubiA prenyltransferase; Provisional
Probab=98.30  E-value=4.3e-07  Score=62.35  Aligned_cols=153  Identities=23%  Similarity=0.302  Sum_probs=74.4

Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CC--CC---
Q ss_conf             9964138877843423431010012332101100134431000345554444432100356544431166-55--55---
Q gi|254780205|r   83 TWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF-SK--RF---  156 (310)
Q Consensus        83 ~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~K--R~---  156 (310)
                      +.|+-.|-|-|+.|+  ++|-=..+++    .+.-+..-..+|..++.--..  ..+++......++|+- .|  |+   
T Consensus        76 tLdRald~eEDaiNr--~El~g~nk~i----gl~~sl~afl~g~~il~~~Gi--l~~~f~Pli~GylYSkgikigk~~~K  147 (304)
T PRK13591         76 TLDRALDSEEDAVNR--KELIGSNKKI----GLAVSLLAFLIGTYILAREGM--LLLAFLPLITGYLYSKGIKIGKFALK  147 (304)
T ss_pred             EECCCCCCHHHCCCC--HHHCCCCCHH----HHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHEEEEECCCCEEEEEEEE
T ss_conf             721122760210451--7650753102----499999999999999885632--75446556311022146123101588


Q ss_pred             ----CCCCCHHHHHHHHHHHHHCCCCCC--CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-C
Q ss_conf             ----433200101001456630111457--54-320246888887421003579988875310002572034665420-2
Q gi|254780205|r  157 ----ILCPQVVLGIGFAGGVFVGWGALH--AS-FSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSY-Q  228 (310)
Q Consensus       157 ----t~~p~~~lG~~~~~~~l~g~~av~--g~-~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~-~  228 (310)
                          --.-+++.|+++  |.+++-.+..  ++ ++....++|...-+  .....+|.+.|.|+|..+|+|++|+..|+ +
T Consensus       148 LKgg~gvKniIVg~tW--g~~iA~l~~~~~~s~~~v~iVf~FFg~kl--FINS~V~DfkDVkGD~~AGIkTLP~~LG~~~  223 (304)
T PRK13591        148 LKGGLGVKNIVVGITW--GAFIAGLAGSYCGSMLPVVLVFLFFGVKL--FINSAIYDFKDIKGDTLAGIKTLPVSLGEQK  223 (304)
T ss_pred             ECCCCCCEEEEEEEEC--CCHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHHHHHCCCHHCCCCHHCCCCCCCHHHCCHH
T ss_conf             5277762048998751--32266653420256414578899998999--8752310021036644307000762316325


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             0466653378999999999
Q gi|254780205|r  229 TKLWLFILYGIFVLCFMVA  247 (310)
Q Consensus       229 ~~~~i~~~~~~~~~~~~~~  247 (310)
                      |+..+...+...-..+..+
T Consensus       224 Tr~~L~~ihl~sh~vl~~a  242 (304)
T PRK13591        224 TRNLLLGIHLFSHLVLGIA  242 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             6649999999999999999


No 52 
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro: IPR004657 This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis. A key reaction in the biosynthesis of menaquinone involves the conversion of the soluble bicyclic naphthalenoid compound 1, 4-dihydroxy-2-naphthoic acid (DHNA) to the membrane-bound demethylmenaquinone .; GO: 0016740 transferase activity, 0009234 menaquinone biosynthetic process, 0016021 integral to membrane.
Probab=96.16  E-value=0.097  Score=29.78  Aligned_cols=224  Identities=15%  Similarity=0.116  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCC-CCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCC---C--CCC---CCC
Q ss_conf             9999999999899999964138877843-423-43101001233210110013443100034555---4--444---432
Q gi|254780205|r   68 FIYIVGAIVTRGAACTWNDLVDHDIDSQ-VLR-TRSRPLPSGQCTRFQALVFAVLQFLISFVLLL---Q--FNP---FVI  137 (310)
Q Consensus        68 ~l~~~G~~~~r~ag~~~Nd~~D~diD~~-~~R-T~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~---~--ln~---~~~  137 (310)
                      .+...-+....-..+.-||+-|..-... .+| -+-|-+.+|.+++++...-......++.....   .  .+.   ...
T Consensus        33 ~~~~~~~~~~~~~~~~~~d~~d~~~g~d~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~  112 (286)
T TIGR00751        33 LLALLTAGLLQILSNLANDYGDGVKGSDKDDRIGPLRGVGKGLITPKELKWALILSLALGALSGLALVGLAAPNLADLFW  112 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999987531000233467775101001343332101278889999999999988778999875445788999


Q ss_pred             --CCHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --1003565444311665-5554332001010014566301114575432-------02468888874210035799888
Q gi|254780205|r  138 --CVGFALLFISLLYPFS-KRFILCPQVVLGIGFAGGVFVGWGALHASFS-------WPAFFLCIGTIFWVVYFDTVYAH  207 (310)
Q Consensus       138 --~l~~~~~~~~~iYp~~-KR~t~~p~~~lG~~~~~~~l~g~~av~g~~~-------~~~~~L~~~~~~Wt~~~dtiYa~  207 (310)
                        .++...+.-...|+-. |.+.+..   .| -.+.-+..||.++.|+.-       +....-..+.-.-...--.+...
T Consensus       113 ~~~~g~~~~~~~~~~~~g~~p~g~~g---~g-~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  188 (286)
T TIGR00751       113 FLGLGGLCIVGAWTYTGGSKPYGYAG---LG-DLSVLVFFGPLGVLGTWYLQAHTLDWAGLLPAVATGLLACAVLNINNL  188 (286)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCC---CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99987999998876521566444222---01-467777775566523455555433356776665544677777653211


Q ss_pred             HHHHHHCCCCCHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             753100025720346654202-0466653378999999999998353379999999999999999998089997999999
Q gi|254780205|r  208 QDKKDDELIGVNSTARLFSYQ-TKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSF  286 (310)
Q Consensus       208 ~D~edD~k~GikSlav~~G~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~  286 (310)
                      +|.+.|+++|-.+++++.|+. .+.....+......+..........+++-+..++..-...-.........++.+....
T Consensus       189 ~d~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~  268 (286)
T TIGR00751       189 RDIPTDAKAGKNTLAVRLGDAKGRVYHCGLLAVAGVCLLLFALATPHSWWGWLFLLAAPLLLKAAGPVRCGRGPRELRPV  268 (286)
T ss_pred             HCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             10220010241000011101334688999999999999999987678888999999888888654333204662357788


Q ss_pred             HHHHHHHHH
Q ss_conf             876459999
Q gi|254780205|r  287 FHSAGVVGI  295 (310)
Q Consensus       287 Fk~n~~~g~  295 (310)
                      .+.......
T Consensus       269 ~~~~~~~~~  277 (286)
T TIGR00751       269 LEDTGLGAL  277 (286)
T ss_pred             HHHHHHHHH
T ss_conf             887789999


No 53 
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein; InterPro: IPR011853    In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This entry describes such transporters, found in the archaea and in bacteria..
Probab=81.48  E-value=3.8  Score=20.09  Aligned_cols=177  Identities=19%  Similarity=0.096  Sum_probs=82.1

Q ss_pred             HHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHHH
Q ss_conf             99999998-999999641388778434234310100123321011001344310003455544-4443210035654443
Q gi|254780205|r   71 IVGAIVTR-GAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQF-NPFVICVGFALLFISL  148 (310)
Q Consensus        71 ~~G~~~~r-~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~l-n~~~~~l~~~~~~~~~  148 (310)
                      +.|+++.+ |.|.-+||..=             -+. |+..---|.+=-+.....|....... |..|  .|      .+
T Consensus       187 LFGafL~~~G~G~fF~D~a~-------------a~~-G~~~GGPAKvAV~sSal~G~~sGSsvANvVt--tG------~f  244 (681)
T TIGR02123       187 LFGAFLEKSGVGKFFIDLAF-------------ALA-GKRRGGPAKVAVVSSALMGMISGSSVANVVT--TG------SF  244 (681)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------------HHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HH------CC
T ss_conf             99999998507899999999-------------983-7678995045787667887789999988885--20------00


Q ss_pred             HCCCCCCCCCCCCHHHH-----HHHH--HHHHHCCCCC-----CCCC--C-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11665555433200101-----0014--5663011145-----7543--2-----0246888887421003579988875
Q gi|254780205|r  149 LYPFSKRFILCPQVVLG-----IGFA--GGVFVGWGAL-----HASF--S-----WPAFFLCIGTIFWVVYFDTVYAHQD  209 (310)
Q Consensus       149 iYp~~KR~t~~p~~~lG-----~~~~--~~~l~g~~av-----~g~~--~-----~~~~~L~~~~~~Wt~~~dtiYa~~D  209 (310)
                      .=|.|||.-+-|+.=++     .++|  +||.||-+|-     .|-.  |     ..|-+||...+++++..+..  -|-
T Consensus       245 TIPlMKr~Gy~~~fAgAvEAaAS~GGQImPPiMGAAAFiMaef~gipY~~I~~aA~iPA~LYf~gv~~~Vh~eA~--k~g  322 (681)
T TIGR02123       245 TIPLMKRAGYKPEFAGAVEAAASTGGQIMPPIMGAAAFIMAEFLGIPYTEIILAAIIPALLYFLGVFMQVHLEAK--KQG  322 (681)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC
T ss_conf             035676377797741666887860670123589999999999836789999999999999999999999989999--658


Q ss_pred             HHHHCCCCCHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             3100025720346654202046665-337899999999999835-337999999999999999999
Q gi|254780205|r  210 KKDDELIGVNSTARLFSYQTKLWLF-ILYGIFVLCFMVAFCLLT-VNFFAWIGLLIALFLTIKRII  273 (310)
Q Consensus       210 ~edD~k~GikSlav~~G~~~~~~i~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~~~i~  273 (310)
                      .++=.|+..|-++.  |++.+..+. -.|.+..+.........+ .+..+-....+......-+..
T Consensus       323 l~G~~~~~lP~~~L--~~~~~~~lk~~~~~liPL~~Li~~L~~~~~s~~~AA~~~i~~~l~~~~~~  386 (681)
T TIGR02123       323 LKGLSKEELPLSQL--GRSPKKVLKAGWYLLIPLVILIYMLLVGEYSPIRAAFYSIAATLIVSLLS  386 (681)
T ss_pred             CCCCCCCCCCCCCC--CCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99987103788877--75179998621404458999999984057427888899999999999987


No 54 
>TIGR02840 spore_YtaF putative sporulation protein YtaF; InterPro: IPR014205   This entry represents YtaF, which represents a protein family identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome. The phylogenetic profile of the members matches the subset of the Firmicutes capable of forming endospores. These species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, and Geobacillus kaustophilus..
Probab=75.93  E-value=0.47  Score=25.62  Aligned_cols=46  Identities=26%  Similarity=0.333  Sum_probs=27.8

Q ss_pred             HCCCCCHHHCCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             012332101100134431000345-----5544444321003565444311
Q gi|254780205|r  105 PSGQCTRFQALVFAVLQFLISFVL-----LLQFNPFVICVGFALLFISLLY  150 (310)
Q Consensus       105 ~sG~is~~~A~~~~~~l~~l~~~~-----~~~ln~~~~~l~~~~~~~~~iY  150 (310)
                      -||.|+.+||+++++.|+.=++..     +.-+||....+.....=+.++|
T Consensus       126 ~SG~I~~kEAllLG~ALsLDafGaGiGAsl~G~~p~~~~~~~~~~S~~fv~  176 (215)
T TIGR02840       126 KSGNITGKEALLLGIALSLDAFGAGIGASLLGLNPLATSILVAVMSFIFVS  176 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             886200899999999999999999899988611789999999999999999


No 55 
>KOG1419 consensus
Probab=73.67  E-value=3.6  Score=20.21  Aligned_cols=55  Identities=29%  Similarity=0.482  Sum_probs=27.8

Q ss_pred             CCCHHH---------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH-HHHH--HHHHH
Q ss_conf             485315---------9989999999998521234334456421699999999999-9998--99999
Q gi|254780205|r   29 HSSTGW---------HLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGA-IVTR--GAACT   83 (310)
Q Consensus        29 ~kp~g~---------~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~-~~~r--~ag~~   83 (310)
                      +||+||         +++++-|+.=.++....-.+.........+.+..+.+.|. |.+|  +|||.
T Consensus        86 ERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~  152 (654)
T KOG1419          86 ERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCC  152 (654)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             3777616879999999999999999986234787887777999999999999999999999753555


No 56 
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=72.94  E-value=5  Score=19.36  Aligned_cols=49  Identities=12%  Similarity=0.139  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHH
Q ss_conf             999999999989999996413887784342343101001233210110013443100
Q gi|254780205|r   68 FIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLI  124 (310)
Q Consensus        68 ~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l  124 (310)
                      .+++.....+++.-.++|++++.      +  ++||.....+.-.-.+.++-++...
T Consensus       107 ~L~~ta~~~l~tie~afN~Iw~v------~--~~R~~~~r~liy~~lltlgplllg~  155 (411)
T PRK04214        107 MLVVTLLMLLHTIEQTFNSIWRV------A--SARPWVTQFLVYWTVLTLGPLLLGA  155 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC------C--CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999998667------7--6671799999999999999999999


No 57 
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=71.44  E-value=4.6  Score=19.56  Aligned_cols=18  Identities=17%  Similarity=0.104  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHCCCCCCCC
Q ss_conf             899999964138877843
Q gi|254780205|r   78 RGAACTWNDLVDHDIDSQ   95 (310)
Q Consensus        78 r~ag~~~Nd~~D~diD~~   95 (310)
                      |....+.-|++++.+|.+
T Consensus        91 r~g~~T~pe~l~~Rf~s~  108 (552)
T TIGR03648        91 KFGKYTVPDFIGDRYYSN  108 (552)
T ss_pred             HCCCCCHHHHHHHHHCCC
T ss_conf             879964699999884884


No 58 
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=65.23  E-value=9.7  Score=17.60  Aligned_cols=85  Identities=16%  Similarity=0.134  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCHHHHCCCCCHHH-CCCHHHHHHHHHCCCCCCCCCCCCCCH--HHHHHHHHHCCCCCCCCCCC-----CHH
Q ss_conf             7843423431010012332101-100134431000345554444432100--35654443116655554332-----001
Q gi|254780205|r   92 IDSQVLRTRSRPLPSGQCTRFQ-ALVFAVLQFLISFVLLLQFNPFVICVG--FALLFISLLYPFSKRFILCP-----QVV  163 (310)
Q Consensus        92 iD~~~~RT~~RPl~sG~is~~~-A~~~~~~l~~l~~~~~~~ln~~~~~l~--~~~~~~~~iYp~~KR~t~~p-----~~~  163 (310)
                      -||.|+|   |=++-|.+-..- .+.++...+..-+.+++.+|-..=-.+  ...-.+.-=||--+|=+++.     |-+
T Consensus        88 sDr~npr---~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNi  164 (448)
T COG2271          88 SDRSNPR---YFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNI  164 (448)
T ss_pred             CCCCCCC---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEHHHHHC
T ss_conf             1467875---4425879999999999862179999999999989885279837786899875854567468874544422


Q ss_pred             HHHHHHHHHHH--CCCCCCC
Q ss_conf             01001456630--1114575
Q gi|254780205|r  164 LGIGFAGGVFV--GWGALHA  181 (310)
Q Consensus       164 lG~~~~~~~l~--g~~av~g  181 (310)
                      +|..  .+++.  |+.+-.+
T Consensus       165 GGal--~~~~~~la~~~~~~  182 (448)
T COG2271         165 GGAL--APLVALLAFFAFHG  182 (448)
T ss_pred             CCCH--HHHHHHHHHHHHCC
T ss_conf             3505--79999999997542


No 59 
>KOG2513 consensus
Probab=58.85  E-value=5.8  Score=18.99  Aligned_cols=10  Identities=20%  Similarity=0.624  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999985
Q gi|254780205|r   39 LPCLWSTVLA   48 (310)
Q Consensus        39 ~p~~~~~~la   48 (310)
                      .|+.+|...-
T Consensus       182 ~~a~~g~~~Y  191 (647)
T KOG2513         182 VPAVFGILLY  191 (647)
T ss_pred             HHHHHHHHHH
T ss_conf             8999857886


No 60 
>KOG3976 consensus
Probab=54.03  E-value=7.1  Score=18.43  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=18.3

Q ss_pred             CCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             38877843423431010012332
Q gi|254780205|r   88 VDHDIDSQVLRTRSRPLPSGQCT  110 (310)
Q Consensus        88 ~D~diD~~~~RT~~RPl~sG~is  110 (310)
                      .|-|-|..+..|+.||..-|++-
T Consensus        32 k~~~~~~~~~~~P~~p~~pgKvr   54 (247)
T KOG3976          32 KDPDRDLTNYPTPPRPEYPGKVR   54 (247)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             67777754477898899975323


No 61 
>KOG1638 consensus
Probab=53.51  E-value=16  Score=16.37  Aligned_cols=118  Identities=20%  Similarity=0.282  Sum_probs=53.9

Q ss_pred             CCCCCCHHHHCCCCCHHHCCCH------HHHHHHHHCCCCCCCCCCCCCCHHHHH--HH-HHHCCCCCCC-CCCCCHHH-
Q ss_conf             4234310100123321011001------344310003455544444321003565--44-4311665555-43320010-
Q gi|254780205|r   96 VLRTRSRPLPSGQCTRFQALVF------AVLQFLISFVLLLQFNPFVICVGFALL--FI-SLLYPFSKRF-ILCPQVVL-  164 (310)
Q Consensus        96 ~~RT~~RPl~sG~is~~~A~~~------~~~l~~l~~~~~~~ln~~~~~l~~~~~--~~-~~iYp~~KR~-t~~p~~~l-  164 (310)
                      .+||+.|      ++++.|+..      .+-+...+..-.-.+++-.+..+...+  +. +++||+.-|. +..|-.+. 
T Consensus        43 ~~~~~~~------ip~~~aw~iqe~Paf~~pl~~~~~~~~~~~~~~~~L~~~flvHYf~R~liypf~~~~~~~~p~~i~a  116 (257)
T KOG1638          43 LNPTKTR------IPPRIAWFIQELPAFAIPLYSLFRGPSSDLPPGLLLLSAFLVHYFHRALIYPFLIRSSNPSPAIIVA  116 (257)
T ss_pred             CCCHHCC------CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHH
T ss_conf             7601047------9933479986094888339986478765456437999999999998877520133379996479999


Q ss_pred             -HHHHHH--HHHHC-CC---CCCCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCCCH
Q ss_conf             -100145--66301-11---4575432024688888742100------35799888753100025720
Q gi|254780205|r  165 -GIGFAG--GVFVG-WG---ALHASFSWPAFFLCIGTIFWVV------YFDTVYAHQDKKDDELIGVN  219 (310)
Q Consensus       165 -G~~~~~--~~l~g-~~---av~g~~~~~~~~L~~~~~~Wt~------~~dtiYa~~D~edD~k~Gik  219 (310)
                       +++|+.  |.+.| |.   ++..+-...-+-..++.++|..      .+|.+..--.+|++++=.|+
T Consensus       117 ~a~~F~~~NG~lqg~y~~~~~~~~d~~~~~~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~YkIP  184 (257)
T KOG1638         117 LAIAFCTLNGTLQGLYLSHYQLYEDPWVTDIRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKGYKIP  184 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
T ss_conf             99999985179999999760346688704599999999998775311010899998601789851268


No 62 
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857    This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=46.13  E-value=6.6  Score=18.62  Aligned_cols=14  Identities=36%  Similarity=0.691  Sum_probs=11.5

Q ss_pred             CCCHHHHHHHHHHC
Q ss_conf             95102013555410
Q gi|254780205|r    1 MSQFFNFKWVRDCI   14 (310)
Q Consensus         1 ~~~~~~~~~~~~~~   14 (310)
                      |+||||++|+.|.-
T Consensus       318 mtK~~nD~Wl~~~G  331 (527)
T TIGR01137       318 MTKFLNDEWLLDNG  331 (527)
T ss_pred             HHHEECHHHHHHCC
T ss_conf             10010437886458


No 63 
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative; InterPro: IPR011744   This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme ..
Probab=44.53  E-value=22  Score=15.51  Aligned_cols=45  Identities=29%  Similarity=0.561  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3159989999999998521234334456421699999999999999899999964
Q gi|254780205|r   32 TGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWND   86 (310)
Q Consensus        32 ~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd   86 (310)
                      +|+- ..+|++.|+.+....-.+.    .+..-|+|.+.++|.    .+|| +|-
T Consensus        48 iGWs-vAIPTLlG~A~GiWlD~hy----Ps~fSWTLtmli~Gv----~~GC-LNA   92 (100)
T TIGR02230        48 IGWS-VAIPTLLGVALGIWLDKHY----PSSFSWTLTMLIVGV----VVGC-LNA   92 (100)
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHH----HHHH-HHH
T ss_conf             8899-9988899998733211468----987038999999999----8744-325


No 64 
>TIGR00908 2A0305 ethanolamine permease; InterPro: IPR004757 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment..
Probab=43.87  E-value=22  Score=15.44  Aligned_cols=10  Identities=30%  Similarity=0.524  Sum_probs=6.5

Q ss_pred             CCHHHHCCCC
Q ss_conf             3101001233
Q gi|254780205|r  100 RSRPLPSGQC  109 (310)
Q Consensus       100 ~~RPl~sG~i  109 (310)
                      .|.|||.---
T Consensus       262 ~n~Plp~al~  271 (456)
T TIGR00908       262 SNDPLPEALE  271 (456)
T ss_pred             CCCCHHHHHH
T ss_conf             6897789999


No 65 
>PRK03545 sugar efflux transporter; Provisional
Probab=39.77  E-value=26  Score=15.05  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=7.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHH
Q ss_conf             089997999999876459999
Q gi|254780205|r  275 LDISCSKQCCSFFHSAGVVGI  295 (310)
Q Consensus       275 ~~~~~~~~~~k~Fk~n~~~g~  295 (310)
                      ..++++......+....+.|.
T Consensus       322 ~ap~~~~~a~al~~s~~~lG~  342 (390)
T PRK03545        322 LAPDATDVAMALFSGIFNIGI  342 (390)
T ss_pred             HCCCCHHHHHHHHHHHHHHHH
T ss_conf             788967899999999999999


No 66 
>PRK12649 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=37.02  E-value=28  Score=14.79  Aligned_cols=17  Identities=18%  Similarity=0.104  Sum_probs=12.8

Q ss_pred             HHHHHHHHHCCCCCCCC
Q ss_conf             99999964138877843
Q gi|254780205|r   79 GAACTWNDLVDHDIDSQ   95 (310)
Q Consensus        79 ~ag~~~Nd~~D~diD~~   95 (310)
                      ++|.+...-=.||+|+.
T Consensus       353 ~aG~i~~~tgtrdi~~l  369 (800)
T PRK12649        353 VAGIVAHEAATRDIRKL  369 (800)
T ss_pred             HHHHHHHHCCCCHHHHH
T ss_conf             77599998075118884


No 67 
>TIGR01314 gntK_FGGY gluconate kinase; InterPro: IPR006002    Gluconate kinase (2.7.1.12 from EC) is an alpha/beta structure consisting of a twisted parallel beta-sheet surrounded by alpha-helices with overall topology similar to nucleoside monophosphate (NMP) kinases, such as adenylate kinase. Significant conformational changes are induced upon binding of ATP to the enzyme. The largest changes involve a hinge-bending motion of the NMP(bind) part and a motion of the LID with adjacent helices, which opens the cavity to the second substrate, gluconate. The opening of the active site cleft upon ATP binding is the opposite of what has been observed in the NMP kinase family so far, which usually close their active site to prevent fortuitous hydrolysis of ATP. The beta and gamma-phosphate groups of ATP bind in the predicted P-loop. A conserved lysine side-chain interacts with the gamma-phosphate group, and might promote phosphoryl transfer.  ATP + D-gluconate = ADP + 6-phospho-D-gluconate.  Gluconate-6-phosphate binds with its phosphate group in a similar position as the gamma-phosphate of ATP, consistent with inline phosphoryl transfer. . ; GO: 0019200 carbohydrate kinase activity, 0019521 D-gluconate metabolic process.
Probab=36.54  E-value=5  Score=19.35  Aligned_cols=35  Identities=29%  Similarity=0.517  Sum_probs=16.9

Q ss_pred             HHHHHHHCCCHHHH--------HHHHHHHCCC---CHHHHHHHHHH
Q ss_conf             13555410546778--------9999863048---53159989999
Q gi|254780205|r    7 FKWVRDCIMGSAIA--------PYVYLARWHS---STGWHLAVLPC   41 (310)
Q Consensus         7 ~~~~~~~~~~~~i~--------~Y~~L~R~~k---p~g~~ll~~p~   41 (310)
                      +||+||.+..+++.        ||=+|+++-+   |-.-.|++-|+
T Consensus       302 lRW~RD~~~~s~i~ta~RLG~DPyD~lT~~A~~v~PGaDGLlFHPY  347 (506)
T TIGR01314       302 LRWLRDELLDSEIETAKRLGVDPYDVLTEIAKRVKPGADGLLFHPY  347 (506)
T ss_pred             HHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             1324556631641112215888157999997107899885420665


No 68 
>PRK00625 shikimate kinase; Provisional
Probab=36.48  E-value=5.3  Score=19.23  Aligned_cols=21  Identities=29%  Similarity=0.370  Sum_probs=15.3

Q ss_pred             HCCCCCCCCCCCCCCHHHHCC
Q ss_conf             138877843423431010012
Q gi|254780205|r   87 LVDHDIDSQVLRTRSRPLPSG  107 (310)
Q Consensus        87 ~~D~diD~~~~RT~~RPl~sG  107 (310)
                      +.|.+.|-..+|.++||++..
T Consensus       101 ~L~~~~e~i~~Rl~~rpl~~~  121 (173)
T PRK00625        101 LLSLPIATIYQRLQKRGLPER  121 (173)
T ss_pred             EEECCHHHHHHHHHCCCCCCC
T ss_conf             983999999999826998777


No 69 
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter; InterPro: IPR001927   It has been shown  that integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. This collection of sequences represents the sodium: galactoside symporter family (SGF).   Like sugar transport proteins, these integral membrane proteins are predicted to comprise twelve membrane spanning domains. ; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0016020 membrane.
Probab=32.98  E-value=33  Score=14.39  Aligned_cols=37  Identities=16%  Similarity=0.282  Sum_probs=15.4

Q ss_pred             CCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHHHHC
Q ss_conf             10013443100034555444----44321003565444311
Q gi|254780205|r  114 ALVFAVLQFLISFVLLLQFN----PFVICVGFALLFISLLY  150 (310)
Q Consensus       114 A~~~~~~l~~l~~~~~~~ln----~~~~~l~~~~~~~~~iY  150 (310)
                      |+.+++++.++....-..-+    -..++....-+.+.+.|
T Consensus        87 a~p~~~~~vL~F~~~~~~~~~n~~~~~v~a~~tYi~~g~~Y  127 (470)
T TIGR00792        87 AIPFAIVLVLLFTTPDFSATGNPIGKLVYAYITYILLGLFY  127 (470)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             78999999999824575543117789999999999984662


No 70 
>COG4125 Predicted membrane protein [Function unknown]
Probab=32.60  E-value=3.9  Score=20.02  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHC
Q ss_conf             998999999641388778434234310100123321011001344310003
Q gi|254780205|r   76 VTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISF  126 (310)
Q Consensus        76 ~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~  126 (310)
                      +..+-+++||-++..-+|+-++|.+.|  -+=++-.-+|..|-..+.+++.
T Consensus        48 ~~atvAm~WN~vyN~lFd~~~rr~~~~--rT~~vRv~HAv~FE~gliv~lv   96 (149)
T COG4125          48 LSATVAMIWNFVYNLLFDRAERRMGTR--RTLAVRVAHAVGFELGLIVILV   96 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999998899999998750--1099999999999750898743


No 71 
>COG2119 Predicted membrane protein [Function unknown]
Probab=29.97  E-value=37  Score=14.08  Aligned_cols=55  Identities=33%  Similarity=0.557  Sum_probs=28.0

Q ss_pred             CCCCCCCHHHHHHHH------HHHHHCCCCCCC-C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             554332001010014------566301114575-4---32024688888742100357998887531000257
Q gi|254780205|r  155 RFILCPQVVLGIGFA------GGVFVGWGALHA-S---FSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIG  217 (310)
Q Consensus       155 R~t~~p~~~lG~~~~------~~~l~g~~av~g-~---~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~G  217 (310)
                      |+.++| ++.|+..+      .++++|..+..- +   ..+....+|++.-.|..       ++|+|||++..
T Consensus        30 r~~~~~-v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l-------~edk~~~~e~~   94 (190)
T COG2119          30 RYRRWP-VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWML-------IEDKEDDEEAQ   94 (190)
T ss_pred             HCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-------CCCCCCCCCCC
T ss_conf             668800-379999999999999999988875148445799999999999999980-------66221311334


No 72 
>pfam04547 Anoctamin Calcium-activated chloride channel. The family carries eight putative transmembrane domains, and, although it has no similarity to other known channel proteins, it is clearly a calcium-activated ionic channel. It is expressed in various secretory epithelia, the retina and sensory neurons, and mediates receptor-activated chloride currents in diverse physiological processes.
Probab=28.63  E-value=21  Score=15.54  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=21.5

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             0546778999986304853159989999999998521234
Q gi|254780205|r   14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLR   53 (310)
Q Consensus        14 ~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~   53 (310)
                      +-.+++--|..-+...    +.-|..|+++|..+-..+..
T Consensus         4 YFGekIa~YFafl~fY----t~~L~~~av~Gi~~~~~~~~   39 (446)
T pfam04547         4 YFGEKIALYFAFLGFY----TKMLLPPAVLGLICFLYGGL   39 (446)
T ss_pred             HHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_conf             6135899999999999----99999999999999999870


No 73 
>pfam04923 Ninjurin Ninjurin. Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation and function in some tissues.
Probab=27.88  E-value=40  Score=13.86  Aligned_cols=37  Identities=11%  Similarity=0.191  Sum_probs=27.9

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9980899979999998764599999999999998652
Q gi|254780205|r  272 IIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       272 i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
                      ..+.+.+++++..++.+-|++.-..+++..++..++.
T Consensus        69 ~~~~ni~~~~~~~~~~~lNn~~~~~vfiitviNV~Is  105 (116)
T pfam04923        69 ISRYNLNNVEEQRRLDRLNNLTTIGVFIITVINVLIS  105 (116)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9763246578889999998799999999998888887


No 74 
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN; InterPro: IPR011966    This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation  which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardised in . This enzyme is related to aldehyde dehydrogenases..
Probab=25.53  E-value=18  Score=16.01  Aligned_cols=14  Identities=43%  Similarity=0.456  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             00357998887531
Q gi|254780205|r  198 VVYFDTVYAHQDKK  211 (310)
Q Consensus       198 t~~~dtiYa~~D~e  211 (310)
                      ...=||+|||.|.+
T Consensus       572 ~~sGD~FYAH~De~  585 (690)
T TIGR02278       572 ELSGDTFYAHMDEI  585 (690)
T ss_pred             HCCCCCCCCHHHHH
T ss_conf             60588420016899


No 75 
>pfam06609 TRI12 Fungal trichothecene efflux pump (TRI12). This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster.It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes.
Probab=25.33  E-value=45  Score=13.58  Aligned_cols=20  Identities=5%  Similarity=-0.262  Sum_probs=9.7

Q ss_pred             HHHCCCCCHHHHHHHHHCHH
Q ss_conf             10002572034665420204
Q gi|254780205|r  211 KDDELIGVNSTARLFSYQTK  230 (310)
Q Consensus       211 edD~k~GikSlav~~G~~~~  230 (310)
                      |..++..-+++|.+.=++.+
T Consensus       291 E~~~~~~~PmiP~rLFk~~r  310 (598)
T pfam06609       291 EVFGKPEQPIIPPALFKDTR  310 (598)
T ss_pred             HHHCCCCCCCCCHHHHCCCH
T ss_conf             64402788868889981761


No 76 
>TIGR00869 sec62 protein translocation protein, Sec62 family; InterPro: IPR011553   Members of the NSCC2 family have been sequenced from various fungal and animal species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.   This family of Sec62 proteins is restricted to the Ascomycota. ; GO: 0008565 protein transporter activity, 0015031 protein transport, 0030176 integral to endoplasmic reticulum membrane.
Probab=23.57  E-value=31  Score=14.59  Aligned_cols=88  Identities=20%  Similarity=0.226  Sum_probs=44.6

Q ss_pred             HHHHHCCCCCCCCCCCC----CCH---HHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCC-----CCCHHHHHHH-HHH
Q ss_conf             99641388778434234----310---1001233210110013443100034555444443-----2100356544-431
Q gi|254780205|r   83 TWNDLVDHDIDSQVLRT----RSR---PLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFV-----ICVGFALLFI-SLL  149 (310)
Q Consensus        83 ~~Nd~~D~diD~~~~RT----~~R---Pl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~-----~~l~~~~~~~-~~i  149 (310)
                      +.|+.. ..+||...-|    +.|   -+|.=.|+.++-+       ---..-.+..||.+     ..++.+++++ .++
T Consensus        69 i~nqM~-~rVdKLp~Q~~~~~k~kP~~~~p~L~vn~~~~f-------~dD~yyvW~YnP~p~~~yl~~~l~v~~ilAlVl  140 (259)
T TIGR00869        69 IINQMV-IRVDKLPSQEAKEHKQKPEQDLPELQVNRKQEF-------EDDMYYVWLYNPLPLRDYLLVVLVVSVILALVL  140 (259)
T ss_pred             HHHCCE-ECCCCCCCHHHHHCCCCCCCCCCEEEECCCCCC-------CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             663420-002578865678617888777633651573110-------267346640278338999999999999999874


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             166555543320010100145663011145
Q gi|254780205|r  150 YPFSKRFILCPQVVLGIGFAGGVFVGWGAL  179 (310)
Q Consensus       150 Yp~~KR~t~~p~~~lG~~~~~~~l~g~~av  179 (310)
                      ||+.-|+---+..+++ .|++|++.++-++
T Consensus       141 fPLWP~fmR~G~wYlS-~G~lG~ig~FF~~  169 (259)
T TIGR00869       141 FPLWPIFMRRGSWYLS-LGALGIIGVFFAV  169 (259)
T ss_pred             HCCCHHHHHCCCHHHH-HHHHHHHHHHHHH
T ss_conf             0212145635512004-5578899999999


No 77 
>TIGR00876 tal_mycobact transaldolase; InterPro: IPR004732   Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated  in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.   Transaldolase is evolutionary related  to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm.
Probab=23.56  E-value=26  Score=15.01  Aligned_cols=45  Identities=22%  Similarity=0.164  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCCCCCCCCCCCCH
Q ss_conf             564216999999999999998999999641----------388778434234310
Q gi|254780205|r   58 LGWSTIFWYLFIYIVGAIVTRGAACTWNDL----------VDHDIDSQVLRTRSR  102 (310)
Q Consensus        58 ~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~----------~D~diD~~~~RT~~R  102 (310)
                      +.....-...-+...|+==.|.||-.+..+          +|.|||++++|.-.|
T Consensus       157 FS~~~~~E~~~~~~~~~~K~rqaGhslskih~V~S~FVSR~D~EID~~~~~~Gsr  211 (350)
T TIGR00876       157 FSVKIAREVADILLKEAEKARQAGHSLSKIHAVISVFVSRVDKEIDKLLDKIGSR  211 (350)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEEEEECCCCHHHHHCCCCCCH
T ss_conf             1326789999999876677664043043210244776530231232212433430


No 78 
>TIGR01388 rnd ribonuclease D; InterPro: IPR006292   These proteins represent ribonuclease D, a 3-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Members of this family are restricted to the Proteobacteria; Aquifex, Mycobacteria and eukaryotes. Ribonuclease D is not essential in Escherichia coli but is deleterious when overexpressed. The precise biological role of ribonuclease D is still unknown. ; GO: 0004540 ribonuclease activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=22.13  E-value=44  Score=13.60  Aligned_cols=95  Identities=14%  Similarity=0.100  Sum_probs=55.0

Q ss_pred             HHHHHCCC-HHHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55541054-677899998630485315998999999---99985212343344564216999999999999998999999
Q gi|254780205|r    9 WVRDCIMG-SAIAPYVYLARWHSSTGWHLAVLPCLW---STVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTW   84 (310)
Q Consensus         9 ~~~~~~~~-~~i~~Y~~L~R~~kp~g~~ll~~p~~~---~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~   84 (310)
                      +++|...+ ..+.|+.+++|  .|..+=+++  +.-   =+|....+..+...++-+    +.. .+.|--..-|-.--+
T Consensus        49 ~LIDPL~~~~~~~Pl~~lL~--d~~v~KvlH--AaseDlEvF~~l~g~lP~PLfDTQ----i~A-a~~G~g~s~gY~~LV  119 (374)
T TIGR01388        49 ALIDPLVIDIDLSPLLELLA--DESVVKVLH--AASEDLEVFLNLFGVLPKPLFDTQ----IAA-AFLGFGESMGYDKLV  119 (374)
T ss_pred             EEECCCCCCCCHHHHHHHHH--CCCCEEEEC--CCCHHHHHHHHHHCCCCCCCHHHH----HHH-HHHCCCCCHHHHHHH
T ss_conf             87658887523479999973--898158530--450479999987057988830588----999-983678521089999


Q ss_pred             HHHCCCCCCCCCCCCC--CHHHHCCCCCHH
Q ss_conf             6413887784342343--101001233210
Q gi|254780205|r   85 NDLVDHDIDSQVLRTR--SRPLPSGQCTRF  112 (310)
Q Consensus        85 Nd~~D~diD~~~~RT~--~RPl~sG~is~~  112 (310)
                      .++-+.++||--.||-  .|||--.+++-.
T Consensus       120 ~~~~~v~LdKse~rtDW~~RPLtd~Ql~YA  149 (374)
T TIGR01388       120 QEVLGVELDKSETRTDWLARPLTDKQLEYA  149 (374)
T ss_pred             HHHHCEECCCCCCCCHHHCCCCCHHHHHHH
T ss_conf             997370317888722210478987789999


No 79 
>pfam00474 SSF Sodium:solute symporter family.
Probab=21.46  E-value=53  Score=13.11  Aligned_cols=21  Identities=14%  Similarity=0.104  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999989999996413887784
Q gi|254780205|r   74 AIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        74 ~~~~r~ag~~~Nd~~D~diD~   94 (310)
                      ...-|....+.-|++++.+|+
T Consensus        61 ~~~r~~~~~T~~d~l~~Rygs   81 (406)
T pfam00474        61 PRLRNLGAYTMPDYLRKRFGG   81 (406)
T ss_pred             HHHHHCCCCCHHHHHHHHHCC
T ss_conf             999996993679999988289


No 80 
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=21.45  E-value=18  Score=15.91  Aligned_cols=40  Identities=5%  Similarity=-0.022  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCC
Q ss_conf             998999999641388778434234310100123321011001344310003455
Q gi|254780205|r   76 VTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL  129 (310)
Q Consensus        76 ~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~  129 (310)
                      +|++||  +=.|+|-|..+            =++||+.++.+++++.++-..+-
T Consensus         9 ~~ssAG--LiRYfdee~~~------------iki~Pk~vi~~~i~~~~~v~~l~   48 (54)
T PRK01253          9 PMSSAG--LIRYFEEETEA------------IKLDPKTVIAIGIALGAAVLALN   48 (54)
T ss_pred             CCCCCC--HHHHHHHHCCC------------CCCCCCEEEHHHHHHHHHHHHHH
T ss_conf             756550--13421413335------------44386243034999999999998


No 81 
>pfam05858 BIV_Env Bovine immunodeficiency virus surface protein (SU). The bovine lentivirus also known as the bovine immunodeficiency-like virus (BIV) has conserved and hypervariable regions in the surface envelope gene. This family corresponds to the SU surface protein.
Probab=20.75  E-value=55  Score=13.02  Aligned_cols=19  Identities=26%  Similarity=0.387  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             6999999999999998999
Q gi|254780205|r   63 IFWYLFIYIVGAIVTRGAA   81 (310)
Q Consensus        63 ~~~~l~l~~~G~~~~r~ag   81 (310)
                      +-...++..+|+..|.|.+
T Consensus       104 VR~VfIi~ilgtltmagta  122 (548)
T pfam05858       104 VRGVFIIGILGTLTMAGTA  122 (548)
T ss_pred             HHHHHEEEEECCHHCCCCC
T ss_conf             6550102331200014410


No 82 
>KOG4202 consensus
Probab=20.10  E-value=57  Score=12.94  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             HHHHHHHCCCCCC-------CCCCCCCCHHHHCC
Q ss_conf             9999641388778-------43423431010012
Q gi|254780205|r   81 ACTWNDLVDHDID-------SQVLRTRSRPLPSG  107 (310)
Q Consensus        81 g~~~Nd~~D~diD-------~~~~RT~~RPl~sG  107 (310)
                      +.+-|...|-+.|       +.-||+++||++..
T Consensus        22 ~~Aa~~~l~s~~dl~g~i~v~~~kR~~D~~~ak~   55 (227)
T KOG4202          22 GYAANRKLSSSVDLTGNIAVKDDKRGKDRPLAKM   55 (227)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             6665441146765202230365334456568878


Done!