Query gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 310
No_of_seqs 167 out of 2519
Neff 7.3
Searched_HMMs 33803
Date Mon May 23 13:37:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780205.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1t3t_A Phosphoribosylformylgl 31.5 8.2 0.00024 17.7 -0.8 12 2-13 1-12 (186)
2 >2an6_E Peptide from phyllopod 20.2 27 0.00079 14.5 0.1 17 95-111 2-18 (26)
3 >3fv6_A YQZB protein; CBS doma 14.8 35 0.001 13.8 -0.3 37 83-119 30-68 (84)
4 >2j1p_A Geranylgeranyl pyropho 12.9 74 0.0022 11.8 1.8 57 74-133 81-137 (293)
5 >2qkp_A Uncharacterized protei 12.3 56 0.0016 12.6 0.1 22 96-117 3-24 (28)
6 >3bg2_A DGTP triphosphohydrola 12.3 78 0.0023 11.7 1.1 26 196-221 188-213 (300)
7 >3im1_A Protein SNU246, PRE-mR 11.5 53 0.0016 12.7 -0.2 19 199-217 18-36 (40)
8 >1wy0_A Geranylgeranyl pyropho 10.9 86 0.0025 11.5 2.8 147 75-226 76-250 (342)
9 >1t95_A Hypothetical protein A 10.5 55 0.0016 12.7 -0.4 15 96-111 25-39 (69)
10 >2w6b_A RHO guanine nucleotide 9.3 99 0.0029 11.1 1.2 8 202-209 10-17 (56)
No 1
>>1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase, PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP; 1.90A {Salmonella typhimurium} (A:227-255,A:616-633,A:687-825)
Probab=31.47 E-value=8.2 Score=17.68 Aligned_cols=12 Identities=33% Similarity=0.803 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHH
Q ss_conf 510201355541
Q gi|254780205|r 2 SQFFNFKWVRDC 13 (310)
Q Consensus 2 ~~~~~~~~~~~~ 13 (310)
||+||..|+.|-
T Consensus 1 h~ifn~~~~~~~ 12 (186)
T 1t3t_A 1 HKIFNADWIIDG 12 (186)
T ss_dssp CHHHHCEEEETT
T ss_pred CCCCCCCEEECC
T ss_conf 877787266637
No 2
>>2an6_E Peptide from phyllopod; protein-peptide complex, ligase; 3.00A {Mus musculus} (E:)
Probab=20.19 E-value=27 Score=14.54 Aligned_cols=17 Identities=35% Similarity=0.292 Sum_probs=11.7
Q ss_pred CCCCCCCHHHHCCCCCH
Q ss_conf 34234310100123321
Q gi|254780205|r 95 QVLRTRSRPLPSGQCTR 111 (310)
Q Consensus 95 ~~~RT~~RPl~sG~is~ 111 (310)
+-+|||-||.+.-+-++
T Consensus 2 qqertklrpvamvrptv 18 (26)
T 2an6_E 2 QQERTKLRPVAMVRPTV 18 (26)
T ss_pred CCCCCCCCCEEEECCCE
T ss_conf 43202345125653624
No 3
>>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic gene regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* (A:1-21,A:97-159)
Probab=14.85 E-value=35 Score=13.79 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=28.2
Q ss_pred HHHHHCCCCCCCC--CCCCCCHHHHCCCCCHHHCCCHHH
Q ss_conf 9964138877843--423431010012332101100134
Q gi|254780205|r 83 TWNDLVDHDIDSQ--VLRTRSRPLPSGQCTRFQALVFAV 119 (310)
Q Consensus 83 ~~Nd~~D~diD~~--~~RT~~RPl~sG~is~~~A~~~~~ 119 (310)
+.+.++|++||+. ++..+++--+-||||.++-.-+.+
T Consensus 30 AAkkLIeheIDSLPVV~~~~~~~eVVGRISKTNITKLFV 68 (84)
T 3fv6_A 30 IAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV 68 (84)
T ss_dssp HHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECCCCCCEEEEEEEHHHHHHHHH
T ss_conf 999966503767999986898767999998899999998
No 4
>>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A (A:)
Probab=12.94 E-value=74 Score=11.84 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf 999989999996413887784342343101001233210110013443100034555444
Q gi|254780205|r 74 AIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFN 133 (310)
Q Consensus 74 ~~~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln 133 (310)
.=++..|..+..|+.|.|=|. .| ++||-+--+.....|+..+-.+...++-++...+
T Consensus 81 iEllh~asLihDDI~d~D~s~--~R-RG~pt~~~~~G~~~Ail~gd~l~~~a~~ll~~~~ 137 (293)
T 2j1p_A 81 VEXIHTXSLIHDDLPCXDNDD--LR-RGKPTNHKVYGEDVAVLAGDALLSFAFEHLASAT 137 (293)
T ss_dssp HHHHHHHHHHHHTSTTTTCCS--EE-TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCCC--CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 987799999987125214675--44-6750177864344565546667789999987622
No 5
>>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.75A {Streptococcus mutans UA159} (A:1-28)
Probab=12.33 E-value=56 Score=12.61 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=17.2
Q ss_pred CCCCCCHHHHCCCCCHHHCCCH
Q ss_conf 4234310100123321011001
Q gi|254780205|r 96 VLRTRSRPLPSGQCTRFQALVF 117 (310)
Q Consensus 96 ~~RT~~RPl~sG~is~~~A~~~ 117 (310)
..||...|--.|-+|+.+|-+.
T Consensus 3 ~dr~s~qpfgngylsveqanli 24 (28)
T 2qkp_A 3 LDRTTQQPFGNGYLSVEQANLI 24 (28)
T ss_dssp CCTTSCEEETTEEECHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6277899999899749999999
No 6
>>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} (A:1-119,A:180-360)
Probab=12.26 E-value=78 Score=11.71 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 21003579988875310002572034
Q gi|254780205|r 196 FWVVYFDTVYAHQDKKDDELIGVNST 221 (310)
Q Consensus 196 ~Wt~~~dtiYa~~D~edD~k~GikSl 221 (310)
+-..+=|+.|++.|.||=.+.|+=|.
T Consensus 188 iMEaADDIaY~i~DLEDai~~glit~ 213 (300)
T 3bg2_A 188 LVEAADDICYTIIDFEDGINLGLIPE 213 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHCCEEHHHHHHHCCCCH
T ss_conf 99987755110311876665033789
No 7
>>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular modeling; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A (A:159-198)
Probab=11.49 E-value=53 Score=12.72 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 0357998887531000257
Q gi|254780205|r 199 VYFDTVYAHQDKKDDELIG 217 (310)
Q Consensus 199 ~~~dtiYa~~D~edD~k~G 217 (310)
-+-+++|.+.+.|||.+..
T Consensus 18 ~~VesVfDim~lEDd~R~~ 36 (40)
T 3im1_A 18 INVETVYDIMALEDEERDE 36 (40)
T ss_dssp TTCCSHHHHHHSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 4479999999863766999
No 8
>>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3} (A:)
Probab=10.94 E-value=86 Score=11.45 Aligned_cols=147 Identities=14% Similarity=0.048 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCC-CCC---CCHHHHHH-----
Q ss_conf 999899999964138877843423431010012332101100134431000345554444-432---10035654-----
Q gi|254780205|r 75 IVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNP-FVI---CVGFALLF----- 145 (310)
Q Consensus 75 ~~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~-~~~---~l~~~~~~----- 145 (310)
=+...|..+..|+.|.|--|+ ++|-.-.+...+.|+..+-.+...++-.+...+. ... ......-.
T Consensus 76 EliH~asLihDDI~D~s~~RR-----g~ps~~~~~G~~~Ai~~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T 1wy0_A 76 ELIHNYSLVHDDIMDMDETRR-----GKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELC 150 (342)
T ss_dssp HHHHHHHHHHHHHHHTCCCST-----TSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998187053022656-----886302331000776410678889999988604762433356765436764552
Q ss_pred ----HHHHCCCCCCCCC--CCCHHH---HHHHHHHHHHCCCCCCCCCCH-HHHHHHH--HHHHHHHHHHHHHHHHHHH--
Q ss_conf ----4431166555543--320010---100145663011145754320-2468888--8742100357998887531--
Q gi|254780205|r 146 ----ISLLYPFSKRFIL--CPQVVL---GIGFAGGVFVGWGALHASFSW-PAFFLCI--GTIFWVVYFDTVYAHQDKK-- 211 (310)
Q Consensus 146 ----~~~iYp~~KR~t~--~p~~~l---G~~~~~~~l~g~~av~g~~~~-~~~~L~~--~~~~Wt~~~dtiYa~~D~e-- 211 (310)
.-+.....+..+. +-+++- |.-+..++.+|....+.+-.. ..+--|. ....+++.-|..=-..|-+
T Consensus 151 ~Gq~~dl~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~~~~~~~~~~~~~~~~g~~lG~afQi~DD~~d~~~~~~~~ 230 (342)
T 1wy0_A 151 EGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKL 230 (342)
T ss_dssp HHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 25203333321567879999999998889999999861400015999999999999999999999988875314887760
Q ss_pred -----HHCCCCCHHHHHHHH
Q ss_conf -----000257203466542
Q gi|254780205|r 212 -----DDELIGVNSTARLFS 226 (310)
Q Consensus 212 -----dD~k~GikSlav~~G 226 (310)
.|.+.|-+|.|+.++
T Consensus 231 gK~~~~Dl~~gk~T~p~~~a 250 (342)
T 1wy0_A 231 GKPVGSDIRKGKKTLIVAHF 250 (342)
T ss_dssp TSCSCHHHHHTCCCHHHHHH
T ss_pred CCCHHHHHHHHCCHHHHHHH
T ss_conf 83334567641015899999
No 9
>>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} (A:95-163)
Probab=10.54 E-value=55 Score=12.66 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=10.3
Q ss_pred CCCCCCHHHHCCCCCH
Q ss_conf 4234310100123321
Q gi|254780205|r 96 VLRTRSRPLPSGQCTR 111 (310)
Q Consensus 96 ~~RT~~RPl~sG~is~ 111 (310)
+++| +||.|.++|..
T Consensus 25 nP~T-~~P~p~~~IE~ 39 (69)
T 1t95_A 25 DPRT-NAPHPPSRIER 39 (69)
T ss_dssp BTTT-TBCCCHHHHHH
T ss_pred CCCC-CCCCCHHHHHH
T ss_conf 9888-99898899999
No 10
>>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus} (A:)
Probab=9.26 E-value=99 Score=11.07 Aligned_cols=8 Identities=75% Similarity=1.045 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 79988875
Q gi|254780205|r 202 DTVYAHQD 209 (310)
Q Consensus 202 dtiYa~~D 209 (310)
||+||..|
T Consensus 10 DtVYaLkD 17 (56)
T 2w6b_A 10 DTVYALKD 17 (56)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
Done!