Query gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 310 No_of_seqs 167 out of 2519 Neff 7.3 Searched_HMMs 13730 Date Mon May 23 13:42:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780205.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1v74a_ d.243.1.1 (A:) Colicin 10.5 34 0.0025 11.5 0.6 13 101-113 2-14 (107) 2 d1rtra_ a.128.1.1 (A:) Farnesy 8.7 42 0.0031 10.9 1.4 57 74-133 70-126 (290) 3 d1t95a1 a.5.8.1 (A:87-161) Hyp 7.9 33 0.0024 11.6 -0.4 15 95-110 32-46 (75) 4 d1r5ba2 b.44.1.1 (A:555-622) E 7.1 50 0.0037 10.5 1.1 15 89-103 42-56 (68) 5 d1x1na1 c.1.8.1 (A:2-524) Amyl 6.8 45 0.0033 10.8 -0.1 11 22-32 313-323 (523) 6 d1p94a_ a.43.1.3 (A:) Plasmid 6.6 53 0.0039 10.3 0.6 20 89-112 18-37 (76) 7 d1eswa_ c.1.8.1 (A:) Amylomalt 6.5 50 0.0036 10.5 -0.0 27 6-34 272-298 (500) 8 d1rqja_ a.128.1.1 (A:) Farnesy 6.1 57 0.0041 10.2 1.8 56 74-132 73-128 (299) 9 d2d9qb1 b.1.1.3 (B:3-96) Granu 4.9 22 0.0016 12.7 -2.7 29 80-108 19-49 (94) 10 d1co4a_ g.47.1.1 (A:) Zinc dom 4.7 77 0.0056 9.4 0.2 9 98-106 34-42 (42) No 1 >d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli [TaxId: 562]} Probab=10.50 E-value=34 Score=11.49 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=9.6 Q ss_pred CHHHHCCCCCHHH Q ss_conf 1010012332101 Q gi|254780205|r 101 SRPLPSGQCTRFQ 113 (310) Q Consensus 101 ~RPl~sG~is~~~ 113 (310) +-||+||+.|.++ T Consensus 2 ~~pLds~~ftrkq 14 (107) T d1v74a_ 2 NDPLDSGRFSRKQ 14 (107) T ss_dssp CCTTCBTTBCHHH T ss_pred CCCCCCCCCHHHH T ss_conf 9876576250998 No 2 >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Probab=8.72 E-value=42 Score=10.94 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=39.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCC Q ss_conf 999989999996413887784342343101001233210110013443100034555444 Q gi|254780205|r 74 AIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFN 133 (310) Q Consensus 74 ~~~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln 133 (310) .=+..+|.-+..|+.|.|-|. .| ++||-...+-....|...+-.+...++.++...+ T Consensus 70 vEllH~asLIHDDI~d~D~~~--~R-Rg~pt~~~~~g~~~Ail~Gd~l~~~a~~l~~~~~ 126 (290) T d1rtra_ 70 LEMIHTYSLIHDDLPAMDNDD--YR-RGKLTNHKVYGEWTAILAGDALLTKAFELISSDD 126 (290) T ss_dssp HHHHHHHHHHHHHSTTTTCCS--EE-TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCT T ss_pred HHHHHHHHHHHCCHHHHHHHH--HH-HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC T ss_conf 999999999852313210011--21-0130368885101788707610679999998478 No 3 >d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=7.88 E-value=33 Score=11.62 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=10.5 Q ss_pred CCCCCCCHHHHCCCCC Q ss_conf 3423431010012332 Q gi|254780205|r 95 QVLRTRSRPLPSGQCT 110 (310) Q Consensus 95 ~~~RT~~RPl~sG~is 110 (310) .+++| +||.|.++|- T Consensus 32 VnP~T-~~P~p~~rIE 46 (75) T d1t95a1 32 IDPRT-NAPHPPSRIE 46 (75) T ss_dssp EBTTT-TBCCCHHHHH T ss_pred CCCCC-CCCCCHHHHH T ss_conf 69988-9989899999 No 4 >d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=7.06 E-value=50 Score=10.48 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=8.1 Q ss_pred CCCCCCCCCCCCCHH Q ss_conf 887784342343101 Q gi|254780205|r 89 DHDIDSQVLRTRSRP 103 (310) Q Consensus 89 D~diD~~~~RT~~RP 103 (310) +.++||..++++.|| T Consensus 42 ~~~~~ktg~~~k~~P 56 (68) T d1r5ba2 42 LHKLDKTNRKSKKPP 56 (68) T ss_dssp CCCCCSSCCCCSSCC T ss_pred HHHHHCCCCEECCCC T ss_conf 777732798704497 No 5 >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} Probab=6.80 E-value=45 Score=10.77 Aligned_cols=11 Identities=9% Similarity=-0.230 Sum_probs=3.8 Q ss_pred HHHHHHCCCCH Q ss_conf 99986304853 Q gi|254780205|r 22 YVYLARWHSST 32 (310) Q Consensus 22 Y~~L~R~~kp~ 32 (310) +....|+||.. T Consensus 313 ~~d~lRIDH~~ 323 (523) T d1x1na1 313 LFDEFRIDHFR 323 (523) T ss_dssp HCSEEEEETGG T ss_pred HCCEEEEHHHH T ss_conf 57841205278 No 6 >d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]} Probab=6.61 E-value=53 Score=10.34 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=10.6 Q ss_pred CCCCCCCCCCCCCHHHHCCCCCHH Q ss_conf 887784342343101001233210 Q gi|254780205|r 89 DHDIDSQVLRTRSRPLPSGQCTRF 112 (310) Q Consensus 89 D~diD~~~~RT~~RPl~sG~is~~ 112 (310) .||+|+.|. .|.|+|+...- T Consensus 18 hRdLekvv~----~p~psgk~Krv 37 (76) T d1p94a_ 18 NRDLERVVT----APVSSGKIKRV 37 (76) T ss_dssp TTTTCGGGS----CCSSTTCEEEC T ss_pred CCHHHHHHC----CCCCCCCCEEE T ss_conf 011889864----88987642335 No 7 >d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} Probab=6.47 E-value=50 Score=10.51 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=12.1 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCHHH Q ss_conf 01355541054677899998630485315 Q gi|254780205|r 6 NFKWVRDCIMGSAIAPYVYLARWHSSTGW 34 (310) Q Consensus 6 ~~~~~~~~~~~~~i~~Y~~L~R~~kp~g~ 34 (310) +++|-++|. .+.-.+....|+||.+|. T Consensus 272 gy~ww~~rl--~~~~~~~~~lRIDH~~Gf 298 (500) T d1eswa_ 272 GFSFWIRRL--EKALELFHLVRIDHFRGF 298 (500) T ss_dssp TTHHHHHHH--HHHHHHCSEEEEETGGGG T ss_pred CCHHHHHHH--HHHHHHCCHHHHHHHHHH T ss_conf 839999999--999975461425758998 No 8 >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Probab=6.08 E-value=57 Score=10.16 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=38.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCC Q ss_conf 99998999999641388778434234310100123321011001344310003455544 Q gi|254780205|r 74 AIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQF 132 (310) Q Consensus 74 ~~~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~l 132 (310) .=+..+|.-+..|+.|.|-|. .| +++|-.-.+-....|...+-.+...++-.+... T Consensus 73 iEllH~asLiHDDI~d~d~~~--~R-RG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~ 128 (299) T d1rqja_ 73 VECIHAYSLIHDDLPAMDDDD--LR-RGLPTCHVKFGEANAILAGDALQTLAFSILSDA 128 (299) T ss_dssp HHHHHHHHHHHHTSTTTTCCC--EE-TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHCCCHHHHHHH--CC-CCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHC T ss_conf 999999999972541345421--12-455431034075433552104788999999867 No 9 >d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=4.95 E-value=22 Score=12.73 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=0.0 Q ss_pred HHHHHHH-HCCCCCC-CCCCCCCCHHHHCCC Q ss_conf 9999964-1388778-434234310100123 Q gi|254780205|r 80 AACTWND-LVDHDID-SQVLRTRSRPLPSGQ 108 (310) Q Consensus 80 ag~~~Nd-~~D~diD-~~~~RT~~RPl~sG~ 108 (310) |.|++|+ .-|-|=+ ...-|+++.++|.++ T Consensus 19 AsC~I~e~C~~~~~a~~I~Wkl~~~~vP~~r 49 (94) T d2d9qb1 19 ASCIIKQNCSHLDPEPQILWRLGAELQPGGR 49 (94) T ss_dssp EEECCCTTSCSSCSCSCCEEESSSCBCTTCE T ss_pred EEEEECCCCCCCCCCCEEEEEECCEECCCCC T ss_conf 9999874146867861699998998878841 No 10 >d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic} Probab=4.67 E-value=77 Score=9.37 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=0.0 Q ss_pred CCCCHHHHC Q ss_conf 343101001 Q gi|254780205|r 98 RTRSRPLPS 106 (310) Q Consensus 98 RT~~RPl~s 106 (310) |+|.||..+ T Consensus 34 ~~kGRP~st 42 (42) T d1co4a_ 34 KPRGRPPTT 42 (42) T ss_dssp CSCCCCSCC T ss_pred CCCCCCCCC T ss_conf 689988989 Done!