RPSBLAST alignment for GI: 254780205 and conserved domain: TIGR01474

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members. Length = 281
 Score =  253 bits (647), Expect = 5e-68
 Identities = 110/286 (38%), Positives = 153/286 (53%), Gaps = 7/286 (2%)

Query: 21  PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80
           PY  L R     G  L + PCLWS +LAA               + L ++ VGAI+ RGA
Sbjct: 3   PYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIP-------PLYLLGLFTVGAILMRGA 55

Query: 81  ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140
            C  ND+ D D D QV RT+SRPL SG  +  QA++F ++Q L++  +LLQ NP  I +G
Sbjct: 56  GCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG 115

Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200
            A L +   YPF KR    PQ+VLG+ F  G  +GW A+    S  A+ L +  I W + 
Sbjct: 116 VASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLG 175

Query: 201 FDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG 260
           +DT+YA QDK+DD  IGV STA  F   TK WL  LY + +L   +A  +  +    ++G
Sbjct: 176 YDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLG 235

Query: 261 LLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF 306
           L  A  L I++I  LDI   + C   F +   VG+L+   + +   
Sbjct: 236 LAAAALLLIRQIATLDIRDPENCLKLFKANNYVGLLLFAGIALGWL 281