RPSBLAST alignment for GI: 254780205 and conserved domain: TIGR01474
>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members. Length = 281
Score = 253 bits (647), Expect = 5e-68
Identities = 110/286 (38%), Positives = 153/286 (53%), Gaps = 7/286 (2%)
Query: 21 PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80
PY L R G L + PCLWS +LAA + L ++ VGAI+ RGA
Sbjct: 3 PYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIP-------PLYLLGLFTVGAILMRGA 55
Query: 81 ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140
C ND+ D D D QV RT+SRPL SG + QA++F ++Q L++ +LLQ NP I +G
Sbjct: 56 GCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG 115
Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200
A L + YPF KR PQ+VLG+ F G +GW A+ S A+ L + I W +
Sbjct: 116 VASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLG 175
Query: 201 FDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG 260
+DT+YA QDK+DD IGV STA F TK WL LY + +L +A + + ++G
Sbjct: 176 YDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLG 235
Query: 261 LLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF 306
L A L I++I LDI + C F + VG+L+ + +
Sbjct: 236 LAAAALLLIRQIATLDIRDPENCLKLFKANNYVGLLLFAGIALGWL 281