RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (310 letters)



>gnl|CDD|36595 KOG1381, KOG1381, KOG1381, Para-hydroxybenzoate-polyprenyl
           transferase [Coenzyme transport and metabolism].
          Length = 353

 Score =  174 bits (442), Expect = 3e-44
 Identities = 104/294 (35%), Positives = 144/294 (48%), Gaps = 14/294 (4%)

Query: 21  PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80
           PY  L R     G  L   PC WS  +AA         G       L ++ VGA++ RGA
Sbjct: 66  PYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-------GLLPSIKMLALFGVGALLMRGA 118

Query: 81  ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140
            CT NDL D D+D++V RT+ RPL SG  +  QA+ F   Q  +   +LLQ N + I +G
Sbjct: 119 GCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG 178

Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPA--FFLCIGTIFWV 198
            + L + + YP  KRF   PQ+VLG+ F  G  +GW AL  S   P+    L +  + W 
Sbjct: 179 ASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLGWCALKGS-LSPSAVLPLYLSGVCWT 237

Query: 199 VYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL--FILYGIFVLCFMVAFCLLTVNFF 256
           + +DT+YAHQDK+DD  IGV STA  F   TK WL  F    I  L         T  ++
Sbjct: 238 LIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASDQTWPYY 297

Query: 257 AWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLDQF 310
           A +G + A      +I  +DI     C   F S    G+++   +++   L  F
Sbjct: 298 AALGAVAARL--GSQIYKVDIDNPSDCWKKFKSNSNTGLILFSGIVLDTLLKSF 349


>gnl|CDD|30731 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related
           prenyltransferases [Coenzyme metabolism].
          Length = 289

 Score =  145 bits (367), Expect = 2e-35
 Identities = 86/294 (29%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 14  IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVG 73
            + + +   + L R        L +LP L   +LAA                 L +  + 
Sbjct: 5   SLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---------GLPSLKLLLLAFLA 55

Query: 74  AIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFN 133
             + R A    NDL D +ID    RT++RPLPSG+ +  +AL+ A+L  L+   L L  N
Sbjct: 56  FFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLN 115

Query: 134 PFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIG 193
           P    +  A L ++L YPF KRF   PQ+VLG+ F  G   G  A+  S    A+ L + 
Sbjct: 116 PLAFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLA 175

Query: 194 TIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTV 253
            I W + +D +YA QD + D   G+ S   LF  +  L L +L  +     ++   L  +
Sbjct: 176 AILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGL 235

Query: 254 N-FFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF 306
                 +GLL+A  L + +I+ +D+     C + F    ++G+L+ I LI+++ 
Sbjct: 236 LGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGLILAVL 289


>gnl|CDD|144580 pfam01040, UbiA, UbiA prenyltransferase family. 
          Length = 258

 Score = 84.5 bits (209), Expect = 4e-17
 Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 11/235 (4%)

Query: 34  WHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDID 93
             LA+LP L    LAA         G +     L + ++  ++ + A    ND  D +ID
Sbjct: 1   LPLALLPVLAGLALAA---------GGALDLLLLLLLLLALLLLQAAGNVLNDYFDREID 51

Query: 94  SQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLY--P 151
           +      SRPLPSG+ +  +AL+ A+   L+  +L L   P ++ +G   L + LLY  P
Sbjct: 52  ADNPNKPSRPLPSGRISPREALLLALALLLLGLLLALLLGPLLLLLGLLGLLLGLLYSLP 111

Query: 152 FSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKK 211
             KR  L  ++V+G+ F   + +G  A+      P   L +      +        +D +
Sbjct: 112 RLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPLFLLGLAILLANDIRDVE 171

Query: 212 DDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALF 266
            D   G  +       +  L L  L     L  +    LL       + +L+A  
Sbjct: 172 GDRKAGRRTLPVRLGEKRALALLALLLAAALLLLALLLLLLAPLLLLLAVLLAAL 226


>gnl|CDD|30458 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
           factor) [Posttranslational modification, protein
           turnover, chaperones].
          Length = 304

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 60/270 (22%), Positives = 102/270 (37%), Gaps = 13/270 (4%)

Query: 45  TVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPL 104
           T  A   L   G +    +   L    +G  +  G A  +N  +D DID+ + RTR RPL
Sbjct: 36  TAFAGMLLAPRGSINPLLLLLTL----LGGALGAGGAGAFNMYIDRDIDALMERTRKRPL 91

Query: 105 PSGQCTRFQALVFAVLQFLISFVLLLQF-NPFVICVG-FALLFISLLY-PFSKRFILCPQ 161
            +G  +  +AL F ++  +  F LL    N     +G F + F  ++Y  + KR    PQ
Sbjct: 92  VTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRR--TPQ 149

Query: 162 VVLGIGFAGGV--FVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVN 219
            ++  GFAG +   +GW A+  S S  A  L      W        A + K D +  G+ 
Sbjct: 150 NIVIGGFAGAMPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIP 209

Query: 220 --STARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDI 277
                +      +  L     +  +  ++A        +  +  L+  +           
Sbjct: 210 MLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRK 269

Query: 278 SCSKQCCSFFHSAGVVGILILICLIISLFL 307
              K     F  + +   L+ + L+I   L
Sbjct: 270 DDRKWARKLFKYSIIYLALLFVALLIDSLL 299


>gnl|CDD|36594 KOG1380, KOG1380, KOG1380, Heme A farnesyltransferase [Coenzyme
           transport and metabolism].
          Length = 409

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 19/239 (7%)

Query: 36  LAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQ 95
           L VL  +    LA  P        + T+ +      VG  +   +A   N + +   DSQ
Sbjct: 108 LVVLTTMTGYALAPGPF------SFPTLLYT----TVGTGLCSASANAINQIFEPPFDSQ 157

Query: 96  VLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL-LQFNPFVICVGFALLFI--SLLYPF 152
           + RT++RPL  G+ +   A+ FA L       LL    NP    +G   +F+   +  P 
Sbjct: 158 MKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTPL 217

Query: 153 SKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKD 212
            +  I+   V   +G A    +GW A        A  L      W        +   + D
Sbjct: 218 KRIHIINTWVGAVVG-AIPPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRND 276

Query: 213 DELIGVNSTA---RLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLT 268
               G    A        +  L   +      L +      LT  +FA   L +  +L 
Sbjct: 277 YSKAGYRMMAVTNPGLCRRVALRYSLA--FLPLSYAAPSTDLTTWWFAIESLPLNAYLA 333


>gnl|CDD|35262 KOG0039, KOG0039, KOG0039, Ferric reductase, NADH/NADPH oxidase and
           related proteins [Inorganic ion transport and
           metabolism, Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 646

 Score = 33.4 bits (76), Expect = 0.079
 Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 15/237 (6%)

Query: 42  LWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRS 101
                L    LR   +  W  +   LF +     V  G        +     S      +
Sbjct: 126 RMGAFLPNLWLRVWVLFLWLGLNVGLFTWRFLQYVYLGTRHILGLCLALARGSAETLNFN 185

Query: 102 RPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQ 161
             L      R +        FL S++   +   F   V   +    LL+ +       P 
Sbjct: 186 MALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNFFPF 245

Query: 162 VVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNST 221
           +V G+ +   +      L  ++ W    L +  +  V+    +          ++ V S 
Sbjct: 246 LVHGLEYTISLASELFFLPKTYKW--LLLGVVGLTGVILLILML---------IMFVLSL 294

Query: 222 A--RLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFL-TIKRIIAL 275
              R   Y+   +   LY +F +  ++      +    W+ + + + L  + RI+  
Sbjct: 295 PFFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLGTT-WMYIAVPVLLYILDRILRF 350


>gnl|CDD|147463 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
          region.  This family includes the N-terminal regions of
          the junctin, junctate and aspartyl beta-hydroxylase
          proteins. Junctate is an integral ER/SR membrane
          calcium binding protein, which comes from an
          alternatively spliced form of the same gene that
          generates aspartyl beta-hydroxylase and junctin.
          Aspartyl beta-hydroxylase catalyses the
          post-translational hydroxylation of aspartic acid or
          asparagine residues contained within epidermal growth
          factor (EGF) domains of proteins.
          Length = 232

 Score = 32.9 bits (75), Expect = 0.13
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 53 RRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD 91
          R+ G+ G S   W++ I ++G  V    A  W DLVD++
Sbjct: 3  RKGGLSGGSFFTWFMVIALLG--VWTSVAVVWFDLVDYE 39


>gnl|CDD|31763 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase
           [Coenzyme metabolism].
          Length = 303

 Score = 31.3 bits (71), Expect = 0.30
 Identities = 45/251 (17%), Positives = 78/251 (31%), Gaps = 31/251 (12%)

Query: 34  WHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDH--- 90
              A+ P +  T LA +        G S       + ++ AI+ +      ND  D+   
Sbjct: 20  LPAAIAPVIVGTALAFW-------YGKSFNLLVALLALIAAILLQILVNLANDYFDYKKG 72

Query: 91  -DIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLL----QFNPFVICVGFALLF 145
            D        +S  +          L  A+       +L +      +  V+ +G   + 
Sbjct: 73  TDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIA 132

Query: 146 ISLLYPFSKRFILCPQVVLGIG-FAGGVFVGWGALHAS-------FSWPAFFLCIGTIFW 197
             +LY         P   +G+G    GVF G   +  +        SW      +     
Sbjct: 133 AGILYTGGPF----PLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGIL 188

Query: 198 VVYFDTVYAHQDKKDDELIGVNSTA-RLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFF 256
           +         +D ++D   G  + A RL     +     L  +  L  ++   L     F
Sbjct: 189 IANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILG---LF 245

Query: 257 AWIGLLIALFL 267
              GLL  L L
Sbjct: 246 PVWGLLFLLAL 256


>gnl|CDD|34938 COG5374, COG5374, Uncharacterized conserved protein [Function
           unknown].
          Length = 192

 Score = 29.5 bits (66), Expect = 1.1
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 242 LCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICL 301
           + + + F LL V    +  L++ L   ++R +    S SK    F H      + I    
Sbjct: 3   IYYTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKHI-----LKITFIF 57

Query: 302 IISLFLD 308
           I+ LF+D
Sbjct: 58  ILLLFID 64


>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
           (glycosyltransferases) [Cell wall/membrane/envelope
           biogenesis].
          Length = 862

 Score = 28.8 bits (64), Expect = 1.8
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 220 STARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG--LLIALFLTIKRIIALDI 277
           +   L S++ + W   ++ +F +   +  CL    F   +G      +++    + ++ I
Sbjct: 644 NFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFSLFMQLLGARPRGNVYMLAMSLYSVLI 703

Query: 278 SCSKQCCSFFHSA----GVVGILILICLIISL 305
             S  C      A    G++G    I +IIS 
Sbjct: 704 IYSLLCAGVLAPASLFEGLLGTSGFIAIIISP 735


>gnl|CDD|34325 COG4709, COG4709, Predicted membrane protein [Function unknown].
          Length = 195

 Score = 28.3 bits (63), Expect = 3.0
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 20/89 (22%)

Query: 224 LFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFA---------WIGLLIALFLTIKRIIA 274
           L +    L L I   +FV+  +VA   L  + +A          I  + +LFL    I A
Sbjct: 90  LLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGILGGVILGVESLFLIGSSISA 149

Query: 275 LDISCSKQCCSFFHSAGVVGILILICLII 303
                      FF   G + + + + ++I
Sbjct: 150 -----------FFIGIGSLLLGLGLGIVI 167


>gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse
          N-terminal cytochrome p450 with a cytochrome p450
          reductase (CYPOR). NADPH cytochrome p450 reductase
          serves as an electron donor in several oxygenase
          systems and is a component of nitric oxide synthases
          and methionine synthase reductases. CYPOR transfers two
          electrons from NADPH to the heme of cytochrome p450 via
          FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an
          FAD-containing enzyme that catalyzes the reversible
          electron transfer between NADP(H) and electron carrier
          proteins such as ferredoxin and flavodoxin. Isoforms of
          these flavoproteins (i.e. having a non-covalently bound
          FAD as a prosthetic group) are present in chloroplasts,
          mitochondria, and bacteria in which they participate in
          a wide variety of redox metabolic pathways. The
          C-terminal domain contains most of the NADP(H) binding
          residues and the N-terminal domain interacts
          non-covalently with the isoalloxazine rings of the
          flavin molecule which lies largely in a large gap
          betweed the two domains. Ferredoxin-NADP+ reductase
          first accepts one electron from reduced ferredoxin to
          form a flavin semiquinone intermediate. The enzyme then
          accepts a second electron to form FADH2 which then
          transfers two electrons and a proton to NADP+ to form
          NADPH..
          Length = 384

 Score = 28.0 bits (63), Expect = 3.4
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 31 STGWHLAVLPCLWSTVLAAYPLRRAGVLGWST 62
            G +LAVLP      L    LRR G L W T
Sbjct: 31 RAGDYLAVLP-RNPPELVRRALRRFG-LAWDT 60


>gnl|CDD|38825 KOG3619, KOG3619, KOG3619, Adenylate/guanylate cyclase [Energy
           production and conversion].
          Length = 867

 Score = 27.2 bits (60), Expect = 6.5
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 3/161 (1%)

Query: 108 QCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIG 167
           +   F + +   L  L    L  Q       +   L   S         +L     L   
Sbjct: 393 RDEYFTSPLGCALLVLCFDGLY-QLLIIPRSLLLLLCLSSAFVCLLLCVVLLMPDSLQWL 451

Query: 168 FAGGVFVGWGALHASF--SWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLF 225
                         S       + + +  +F  ++   +  H            +  +L+
Sbjct: 452 SPKIFRTRIARTALSIFTVLIIYMVALINMFACLFSSCIPNHTITFSSISERCEAVPQLY 511

Query: 226 SYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALF 266
              + +   +   +F+    +   LL +  FA  GLLI L 
Sbjct: 512 FLLSCVLGLLSTAVFLRLPFMLKLLLLLIVFAAYGLLIELS 552


>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases.  This
           group contains proteins identified as sorbitol
           dehydrogenases and other sugar dehydrogenases of the
           medium-chain dehydrogenase/reductase family (MDR), which
           includes zinc-dependent alcohol dehydrogenase and
           related proteins. Sorbitol and aldose reductase are
           NAD(+) binding proteins of the polyol pathway, which
           interconverts glucose and fructose. Sorbitol
           dehydrogenase is tetrameric and has a single catalytic
           zinc per subunit. NAD(P)(H)-dependent oxidoreductases
           are the major enzymes in the interconversion of alcohols
           and aldehydes, or ketones. Related proteins include
           threonine dehydrogenase, formaldehyde dehydrogenase, and
           butanediol dehydrogenase. The medium chain alcohol
           dehydrogenase family (MDR) has a NAD(P)(H)-binding
           domain in a Rossmann fold of a beta-alpha form. The
           N-terminal region typically has an all-beta catalytic
           domain. These proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and have 2 tightly bound zinc atoms per subunit. Horse
           liver alcohol dehydrogenase is a dimeric enzyme and each
           subunit has two domains. The NAD binding domain is in a
           Rossmann fold and the catalytic domain contains a zinc
           ion to which substrates bind. There is a cleft between
           the domains that closes upon formation of the ternary
           complex.
          Length = 343

 Score = 26.8 bits (60), Expect = 8.1
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 259 IGLLIALFLTI---KRIIALDISCSKQ 282
           IGLL   +L I   KR+IA+DI   K 
Sbjct: 171 IGLLAIQWLKILGAKRVIAVDIDDEKL 197


>gnl|CDD|145408 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This family
           corresponds to the beta subunit of NADP transhydrogenase
           in prokaryotes, and either the protein N- or C terminal
           in eukaryotes. The domain is often found in conjunction
           with pfam01262. Pyridine nucleotide transhydrogenase
           catalyses the reduction of NAD+ to NADPH. A complete
           loss of activity occurs upon mutation of Gly314 in E.
           coli.
          Length = 464

 Score = 26.6 bits (59), Expect = 8.4
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 236 LYGI--FVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSK--QCCSFFHSAG 291
           + GI    +  +          FA I   IA    I   IA  +  +   Q  + FHS  
Sbjct: 32  ILGIIGMTIALIATLLGPDFTGFAQIIGAIAPGGAIGLPIAKRVEMTAMPQLVAAFHS-- 89

Query: 292 VVGI-LILICL 301
            VG+  +L+ +
Sbjct: 90  FVGLAAVLVGI 100


>gnl|CDD|147584 pfam05478, Prominin, Prominin.  The prominins are an emerging
           family of proteins that among the multispan membrane
           proteins display a novel topology. Mouse prominin and
           human prominin (mouse)-like 1 (PROML1) are predicted to
           contain five membrane spanning domains, with an
           N-terminal domain exposed to the extracellular space
           followed by four, alternating small cytoplasmic and
           large extracellular, loops and a cytoplasmic C-terminal
           domain. The exact function of prominin is unknown
           although in humans defects in PROM1, the gene coding for
           prominin, cause retinal degeneration.
          Length = 809

 Score = 26.5 bits (59), Expect = 9.3
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 128 LLLQFNPFVICVGFALLFISLLYPFSKRFILC 159
           LL      ++C    +LFI LL P       C
Sbjct: 87  LLRYEWGVLVCAVIGVLFI-LLMPIVGLCFCC 117


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.337    0.147    0.510 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,211,556
Number of extensions: 243717
Number of successful extensions: 1819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 258
Length of query: 310
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 216
Effective length of database: 4,232,491
Effective search space: 914218056
Effective search space used: 914218056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 57 (25.7 bits)