RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62] (310 letters) >gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed. Length = 314 Score = 293 bits (753), Expect = 4e-80 Identities = 142/300 (47%), Positives = 174/300 (58%), Gaps = 5/300 (1%) Query: 8 KWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYL 67 WV D + + PY LARW GW L + PC WS LAA G+L W+L Sbjct: 20 NWV-DRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLL----WHL 74 Query: 68 FIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFV 127 F++ VGAI RGA CT+ND+VD DID++V RTRSRPLPSGQ +R QA VF VLQ L+ Sbjct: 75 FLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLA 134 Query: 128 LLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPA 187 +LLQFN F I +G A L I YPF KR PQ LG+ F+ G +GW A S S A Sbjct: 135 VLLQFNWFAIALGIASLAIVAAYPFMKRITWWPQFFLGLAFSWGALMGWAAHFGSLSLAA 194 Query: 188 FFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVA 247 L G+I W + +DT+YAHQDK+DD LIGV STARLF TK WL + YG+ VL +A Sbjct: 195 VLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLA 254 Query: 248 FCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFL 307 F L V A +GLL A +I LDI QC F S G+LI + L++ Sbjct: 255 FWLAGVPLLALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKSNRDAGLLIFLGLVVGGLA 314 >gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members. Length = 281 Score = 253 bits (647), Expect = 5e-68 Identities = 110/286 (38%), Positives = 153/286 (53%), Gaps = 7/286 (2%) Query: 21 PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80 PY L R G L + PCLWS +LAA + L ++ VGAI+ RGA Sbjct: 3 PYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIP-------PLYLLGLFTVGAILMRGA 55 Query: 81 ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140 C ND+ D D D QV RT+SRPL SG + QA++F ++Q L++ +LLQ NP I +G Sbjct: 56 GCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG 115 Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200 A L + YPF KR PQ+VLG+ F G +GW A+ S A+ L + I W + Sbjct: 116 VASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLG 175 Query: 201 FDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG 260 +DT+YA QDK+DD IGV STA F TK WL LY + +L +A + + ++G Sbjct: 176 YDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLG 235 Query: 261 LLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF 306 L A L I++I LDI + C F + VG+L+ + + Sbjct: 236 LAAAALLLIRQIATLDIRDPENCLKLFKANNYVGLLLFAGIALGWL 281 >gnl|CDD|183789 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed. Length = 285 Score = 182 bits (465), Expect = 8e-47 Identities = 91/283 (32%), Positives = 146/283 (51%), Gaps = 8/283 (2%) Query: 21 PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80 Y L R H G L P L+ +LA++ L L ++I+G+++ R A Sbjct: 9 AYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPD--------ISLLVLFIIGSVLMRSA 60 Query: 81 ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140 C ND+ D ID V RT++RPL SG + QAL+ + LI+ V+LL N I + Sbjct: 61 GCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS 120 Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200 F + + +LYP KRF PQ+ LG F G+ + + A+ A L IG IFW + Sbjct: 121 FIAVILIVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAILLYIGCIFWTIG 180 Query: 201 FDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG 260 +DT+YA+QDKKDD IGV STA F +T+ ++ LY I ++ +++ + +++ ++ Sbjct: 181 YDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLA 240 Query: 261 LLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLII 303 +L A + + LD C F + VG+L+ + ++ Sbjct: 241 ILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVGLLLFLGAVL 283 >gnl|CDD|183804 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed. Length = 290 Score = 176 bits (449), Expect = 5e-45 Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 9/256 (3%) Query: 20 APYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRG 79 + L RW G + ++P LW+ LAA G+ + I I+GA+ T Sbjct: 10 LAIIRLLRWDKPAGRLILMIPALWAVFLAA-----HGLPPL----PLVGIIILGALATSA 60 Query: 80 AACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICV 139 A C NDL D DID QV RTR RPL S + + +V A++ L + L NP + Sbjct: 61 AGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWL 120 Query: 140 GFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVV 199 A + + LYP +KR PQ+VL I + V + W A+ + L T+FW + Sbjct: 121 CVAAVPVIFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDLGTWLLWAATVFWTL 180 Query: 200 YFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWI 259 FDTVYA D++DD IGVNS+A F + + + + V + LL ++ WI Sbjct: 181 GFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFWI 240 Query: 260 GLLIALFLTIKRIIAL 275 GL IA L ++ L Sbjct: 241 GLAIAAVLWARQYRRL 256 >gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase. Length = 289 Score = 174 bits (442), Expect = 3e-44 Identities = 103/284 (36%), Positives = 137/284 (48%), Gaps = 12/284 (4%) Query: 17 SAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIV 76 ++ PY LAR G L PC+WS LAA P G L ++ GA++ Sbjct: 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPP-------GSLPDLKMLALFGCGALL 56 Query: 77 TRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFV 136 RGA CT NDL+D DID +V RT+ RP+ SG T FQ + F Q L+ +LLQ N + Sbjct: 57 LRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYS 116 Query: 137 ICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFF-LCIGTI 195 +G + L + YP KRF PQ LG+ F G +GW A+ S L + Sbjct: 117 RILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVKGSLDPAVVLPLYASGV 176 Query: 196 FWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL--FILYGIFVLCFMVAFCLLTV 253 W + +DT+YAHQDK+DD +GV STA F TKLWL F I L L Sbjct: 177 CWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGW 236 Query: 254 NFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILI 297 ++A GL A +I +D+S C F S G ++ Sbjct: 237 PYYA--GLAAAAGHLAWQIQTVDLSSRADCNRKFVSNKWFGAIV 278 >gnl|CDD|183790 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed. Length = 282 Score = 170 bits (433), Expect = 4e-43 Identities = 87/249 (34%), Positives = 126/249 (50%), Gaps = 9/249 (3%) Query: 21 PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80 Y L R G L + P LW+ LAA G+ W L ++++G + R A Sbjct: 7 AYARLMRLDKPIGTLLLLWPTLWALWLAA-----DGIPDL----WVLVVFVLGVFLMRAA 57 Query: 81 ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140 C ND D D D V RT++RPL SG + +AL V+ L++F+L+L N I + Sbjct: 58 GCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS 117 Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200 A L ++ +YPF KR+ PQVVLG F G+ + + A+ S A+ L + I W V Sbjct: 118 VAALALAWIYPFMKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVPLEAWLLFLANILWTVA 177 Query: 201 FDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG 260 +DT YA D+ DD IG+ STA LF KL + +L + A LL + + + G Sbjct: 178 YDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYWG 237 Query: 261 LLIALFLTI 269 LL+A L + Sbjct: 238 LLVAAALFV 246 >gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed. Length = 294 Score = 125 bits (317), Expect = 1e-29 Identities = 94/302 (31%), Positives = 139/302 (46%), Gaps = 33/302 (10%) Query: 19 IAPYVYLARWHSSTGWHLAVLPCLWSTVL--AAYPLRRAGVLGWSTIFWYLFIYIVGAIV 76 ++P+ L RW+ TG + ++P WS L +A P L + I+G + Sbjct: 7 LSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS-----------LLLLLLIILGGLA 55 Query: 77 TRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISF--VLLLQFNP 134 GA C NDL D ID +V RT++RPL G+ + A ++ L+S VL L Sbjct: 56 VSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPS 115 Query: 135 FVICVG---FALLFISLLYPFSKRFILCPQVVLGI--GFAGGVFVGWGALHASF--SWPA 187 +C+ AL I L+YP +KR+ PQ +L + GFA V + W A S WP Sbjct: 116 RNLCLSLAFLALPPI-LIYPSAKRWFAYPQAILALCWGFA--VLIPWAAAEGSLNGGWPL 172 Query: 188 FFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVA 247 F + T+ W FDTVYA D++DD IG+NS+A + I Y F+ +A Sbjct: 173 LFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICY--FLTSIFLA 230 Query: 248 FCLLT--VNFFAWIGLLIALFLTIKRIIAL---DISCSKQCCSFFHSAGVVGILILICLI 302 V F W LIA + I+ L S F + ++G L+L+ LI Sbjct: 231 LAAFIAQVGFIFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQV-ILGSLLLLGLI 289 Query: 303 IS 304 ++ Sbjct: 290 LA 291 >gnl|CDD|171798 PRK12886, ubiA, prenyltransferase; Reviewed. Length = 291 Score = 105 bits (265), Expect = 1e-23 Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 5/214 (2%) Query: 56 GVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQAL 115 G+ G S + W L +VGA R AA +N L+D +ID++ RT R +P+G ++ A+ Sbjct: 37 GLPGASQLDWILMA-MVGA---RTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAI 92 Query: 116 VFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVG 175 +F VL L+ NP + + LF LLY + KRF VVLG A Sbjct: 93 LFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGA 152 Query: 176 WGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFI 235 W A+ + PA L + +FWV FD +YA QD + D G++S LW+ Sbjct: 153 WIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIAR 212 Query: 236 LYGIFVLCFMV-AFCLLTVNFFAWIGLLIALFLT 268 ++ + ++ F+ + + GL + L Sbjct: 213 VFHLLMIGFLFALGISAGLGPWFLAGLAVTGILL 246 >gnl|CDD|162380 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc. Length = 282 Score = 97.0 bits (242), Expect = 5e-21 Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 4/248 (1%) Query: 64 FWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFL 123 L + ++ A+ R AA +N ++D ID++ RT++RPL SG ++ +A +L Sbjct: 35 LKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLA 94 Query: 124 ISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASF 183 + NP + +L + ++YP++KRF VLG + GW A+ + Sbjct: 95 LFLSASYFLNPLAFILSPLVLLVLIIYPYTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTI 154 Query: 184 SWP--AFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFV 241 S+ A+ L IG FW+ FD +YA QD + D G++S F + L + L + Sbjct: 155 SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVIT 214 Query: 242 LCFMVAFCLLTVNFFAWI--GLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILI 299 ++ N + + +LI L L + I SK +FF++ G + I LI Sbjct: 215 FILLLLVGFYVGNGYIALLALILIGLILAYEHYIVDPGDQSKIQRAFFYANGFLSITFLI 274 Query: 300 CLIISLFL 307 +II + L Sbjct: 275 GVIIDVLL 282 >gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed. Length = 284 Score = 87.5 bits (217), Expect = 4e-18 Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 13/257 (5%) Query: 54 RAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQ 113 L T+ +VGA R A N ++D +ID++ RT R L +G + Sbjct: 37 HWADLLLVTV------AMVGA---RTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRT 87 Query: 114 ALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVF 173 A A++ + NP + + + ++YP++KRF P +LG+ A G Sbjct: 88 AWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPV 147 Query: 174 VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL 233 W A+ ++SWPA L + W+ FD +YA QD + D IGV S F + LW Sbjct: 148 GAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWA 207 Query: 234 FILYGIFVLCFMVAFCLLT-VNFFAWIGLLI--ALFLTIKRIIALDISCSKQCCSFFHSA 290 + + V F L WIGL I F I++ S+ +FF + Sbjct: 208 SRVAHVVTFALFVWFGLAVGFGALWWIGLAITAGAFAYEHAIVSPT-DLSRVNRAFFTAN 266 Query: 291 GVVGILILICLIISLFL 307 G VGI + ++ L + Sbjct: 267 GFVGIALFGFALLDLLV 283 >gnl|CDD|183806 PRK12874, ubiA, prenyltransferase; Reviewed. Length = 291 Score = 84.7 bits (210), Expect = 3e-17 Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 9/265 (3%) Query: 46 VLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLP 105 ++A+ G G+ L + I+ A+ R A +N LVD DID RT +RP Sbjct: 32 IVASKQKNDTGWFGFKL----LILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSV 87 Query: 106 SGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLG 165 G+ + ++F VL LI + NP + F L + Y + KRF +VLG Sbjct: 88 DGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLG 147 Query: 166 IGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLF 225 + G A+ + FL +G +FWV FD +Y+ QD + D+ G++S F Sbjct: 148 LSLGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKF 207 Query: 226 SYQTKLWLFILYGIFVLCFMVAFCLLT-VNFFAWIGLLIALFLTIK--RIIALDISCSKQ 282 + L++ L+ + + F + F + FA++G++++ + + ++ D K Sbjct: 208 GEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAYLGVIVSALILLYEHYLVRKDF--KKI 265 Query: 283 CCSFFHSAGVVGILILICLIISLFL 307 +FF G +GI+ I +++ + Sbjct: 266 DKAFFTLNGYLGIVFFIFIVLDVLF 290 >gnl|CDD|179840 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional. Length = 296 Score = 72.9 bits (180), Expect = 9e-14 Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 9/140 (6%) Query: 64 FWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFL 123 L + ++G + GAA N+ +D DID+++ RT++RPL +G+ + +AL+F ++ + Sbjct: 43 LLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGV 102 Query: 124 ISFVLLLQF-NPFVICVGFA-LLFISLLYP-FSKRFILCPQ-VVLGIGFAGG--VFVGWG 177 + F+LL F NP + A + F ++Y + KR PQ +V+G G AG +GW Sbjct: 103 LGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKR--RTPQNIVIG-GAAGAMPPLIGWA 159 Query: 178 ALHASFSWPAFFLCIGTIFW 197 A+ S SW A L + W Sbjct: 160 AVTGSLSWEALILFLIIFLW 179 >gnl|CDD|162379 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor. Length = 280 Score = 67.3 bits (165), Expect = 5e-12 Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 17/223 (7%) Query: 59 GWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFA 118 G L + ++G + +A +N +D DID ++ RTR+RPL +G+ + +AL F Sbjct: 29 GALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFG 88 Query: 119 VLQFLISFVLLLQF-NPFVICVGFALLFI-SLLY-PFSKRFILCPQ-VVLGIGFAGGV-- 172 +L ++ +L F NP +G +F ++Y + KR PQ V+G GFAG V Sbjct: 89 LLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRR--TPQNTVIG-GFAGAVPP 145 Query: 173 FVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIG-----VNSTARLFSY 227 +GW A+ S S A+ L W A + K D G V R+ Sbjct: 146 LIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKR 205 Query: 228 QTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIK 270 Q L+ L + ++AF T + + L+ Sbjct: 206 QIALYTAAL---LPVSLLLAFLGGTGWLYLIVATLLGALFLYL 245 >gnl|CDD|183862 PRK13106, ubiA, prenyltransferase; Reviewed. Length = 300 Score = 62.4 bits (152), Expect = 2e-10 Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 23/211 (10%) Query: 65 WYLFIYIVGAIV-TRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFL 123 I I A+ R A T ++L D +ID++ RT++RPL +G +A + Sbjct: 48 ISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLI 107 Query: 124 ISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQ----VVLGIGFAGGVFVGWGAL 179 + F N + + + + I++ YP+ KR+ + G+ G G Sbjct: 108 LFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLGLY 167 Query: 180 HASF-----SWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLF 234 S P F+ IGTI W FD D + D +G++S A + Sbjct: 168 ANSLIQVLLRVPWLFV-IGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVL--------- 217 Query: 235 ILYGIFVLCFMVAFCLLTVNFFAWIGLLIAL 265 G + L F L +V L L Sbjct: 218 ---GKWALTFAGLNQLFSVVLDLLGDLYYGL 245 >gnl|CDD|106021 PRK12895, ubiA, prenyltransferase; Reviewed. Length = 286 Score = 60.6 bits (147), Expect = 5e-10 Identities = 53/247 (21%), Positives = 107/247 (43%), Gaps = 4/247 (1%) Query: 63 IFWYLFIYIVGAIVT-RGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQ 121 I + I+ A V+ R +A + N + D R + L SG+ +A+ F ++ Sbjct: 34 IHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIF 93 Query: 122 FLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHA 181 I + N V + ++F+ ++ PF KR+ + +G GV G+ A+ Sbjct: 94 IAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIP 153 Query: 182 SFSW--PAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGI 239 +F + + + I + W+ FD +Y D + D++ G+ + + + L++ ++ I Sbjct: 154 AFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHI 213 Query: 240 FVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCC-SFFHSAGVVGILIL 298 L + + L+I L I + + +D SFF++ +G + L Sbjct: 214 SSLILFWISGIYIRTLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFIGFVFL 273 Query: 299 ICLIISL 305 I +I+SL Sbjct: 274 IGIILSL 280 >gnl|CDD|183803 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed. Length = 279 Score = 48.5 bits (116), Expect = 2e-06 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 15/141 (10%) Query: 67 LFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVF----AVLQF 122 L ++G + G + +N ++ DID + RT RP P G R +AL + L Sbjct: 38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGT 97 Query: 123 LISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGI---GFAGGV--FVGWG 177 + F+LL P + Y L P+ L I GFAG G+ Sbjct: 98 ALGFLLL---GPL---TALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYA 151 Query: 178 ALHASFSWPAFFLCIGTIFWV 198 + S A L W Sbjct: 152 SGTGSLDLEAVLLSFLIYLWT 172 >gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional. Length = 306 Score = 48.1 bits (115), Expect = 3e-06 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%) Query: 64 FWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFL 123 + ++G + + C N+ +D DID+++ RTR+R +G+ + +AL F + + Sbjct: 46 PVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGV 105 Query: 124 ISFVLLLQF-NPF-VICVGFALLFISLLYP-FSKRFILCPQVVLGIGFAGGV--FVGWGA 178 F LL F NP + F + +Y + KR L +G + VG+ A Sbjct: 106 AGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRN--SVYGTLVGSLSGAMPPVVGYCA 163 Query: 179 LHASFSWPAFFLCIGTIFW 197 + F A L + W Sbjct: 164 VTGQFDAGALILLLMFSLW 182 >gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed. Length = 279 Score = 43.8 bits (104), Expect = 6e-05 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 20/126 (15%) Query: 72 VGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQ 131 + A G+A ND D+++D + R RP+PSG+ +R +AL+ A+L F++ + Sbjct: 44 LTAFFASGSANALNDYFDYEVDR-INRP-DRPIPSGRISRREALLLAILLFILGLIAAYL 101 Query: 132 FNPFVICVGFALLFISLLYPFS-KRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFL 190 +P V + + +LY + K + G G ++V +F F+ Sbjct: 102 ISPLAFLVVILVSVLGILYNWKLKEY----------GLIGNLYV-------AFLTGMTFI 144 Query: 191 CIGTIF 196 G Sbjct: 145 FGGIAV 150 >gnl|CDD|178375 PLN02776, PLN02776, prenyltransferase. Length = 341 Score = 41.7 bits (98), Expect = 3e-04 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Query: 44 STVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRP 103 +T A + L + + W G ++ +A T N + + DS++ RT RP Sbjct: 12 ATSGAGFVLGSGEAIDLPGLGWT----CAGTMLCAASANTLNQVFEVKNDSKMKRTMRRP 67 Query: 104 LPSGQCTRFQALVFAV 119 LPSG+ + A+ +AV Sbjct: 68 LPSGRISVPHAVAWAV 83 >gnl|CDD|171790 PRK12876, ubiA, prenyltransferase; Reviewed. Length = 300 Score = 41.3 bits (97), Expect = 3e-04 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 59 GWSTIFW----YLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQA 114 G TI + VG IV N ++D ID + RT SR LP+ + + Sbjct: 45 GIKTISLGGSAFFCARTVGIIV--------NQIIDCAIDKKNPRTSSRVLPAKLLSINFS 96 Query: 115 LVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFV 174 ++ L + L NP + + ++YP++KR +LG+ + + + Sbjct: 97 MLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILM 156 Query: 175 GWGALHASFSWPAFFLCIGTIFWVVYF-------DTVYAHQD 209 + A+ + +F L W + F D +YA QD Sbjct: 157 NFFAI--IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQD 196 >gnl|CDD|183439 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional. Length = 295 Score = 39.5 bits (93), Expect = 0.001 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%) Query: 85 NDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALL 144 ND+ D + D R+RP+ SG + A + AV+ + S L +P + V L Sbjct: 66 NDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLLVYL 125 Query: 145 FISLLYPFS-KRFILCPQVVLGIGF-----AGGVFVGWGALHASFSWPAFFLC--IGTIF 196 ++L Y F K + + GF AGGV A+ S P LC + ++F Sbjct: 126 VLNLAYSFKLKHQPVLDVFCIASGFVLRAIAGGV-----AIGVPLS-PWLLLCTALLSLF 179 Query: 197 WV 198 Sbjct: 180 LA 181 >gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed. Length = 276 Score = 39.2 bits (92), Expect = 0.001 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 68 FIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFV 127 + + T GA ND D +ID + RP+PSG + AL F++L F Sbjct: 42 LAFAAVFLAT-GAGNAINDYFDREIDR--INRPDRPIPSGAVSPRGALAFSILLFAAGVA 98 Query: 128 LLLQFNPFVICVGFALLFISLLYPFSKRF 156 L P +C+ AL LL +++ Sbjct: 99 LAFLLPP--LCLAIALFNSLLLVLYAETL 125 >gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed. Length = 277 Score = 37.4 bits (87), Expect = 0.005 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 83 TWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVL--LLQFNPFVICVG 140 T ND D++ID + +RPLP G +R AL +++L F + L L+ F+ +G Sbjct: 55 TINDYFDYEIDK--INRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALG 112 Query: 141 -FALLFI 146 + L+F+ Sbjct: 113 AYVLMFL 119 >gnl|CDD|181313 PRK08238, PRK08238, hypothetical protein; Validated. Length = 479 Score = 36.4 bits (85), Expect = 0.009 Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 6/98 (6%) Query: 84 WNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFAL 143 NDL+D + D R R RP SG L A L L L L P + V A Sbjct: 245 LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAY 304 Query: 144 LFISLLYPFS-KRFILCPQVVLGIGF-----AGGVFVG 175 L ++L Y KR +L + L + AG +G Sbjct: 305 LALTLAYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIG 342 >gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana. Length = 283 Score = 34.8 bits (80), Expect = 0.030 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 16/144 (11%) Query: 55 AGVLGWSTIFWYLFI---YIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCT- 110 +G W+L + + G + T G + + ND D D+D+ + RP+PSG + Sbjct: 26 SGYERGFPEHWWLMLLGMLMAGPLGT-GFSQSINDYFDRDVDA--INEPQRPIPSGIISL 82 Query: 111 ---RFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF--SKRFILCPQVVLG 165 R+ LV V L++ VL VG L I + P + L P V G Sbjct: 83 REVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAV-G 141 Query: 166 IGFAGGVFVGWGALHASFSWPAFF 189 + + G + W A HA F+ + Sbjct: 142 LSYEG---LPWMAGHAIFAPLTWQ 162 >gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed. Length = 279 Score = 33.8 bits (78), Expect = 0.058 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 85 NDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALL 144 ND+ D +ID + RP+PSG+ + +A +F++ F++ +L + N + ALL Sbjct: 57 NDIYDIEIDK--INKPERPIPSGRISLKEAKIFSITLFIVGLILSIFIN--IYAFLIALL 112 Query: 145 FISLLYPFSKRF 156 LLY ++K Sbjct: 113 NSILLYLYAKDL 124 >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated. Length = 718 Score = 29.7 bits (67), Expect = 1.1 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Query: 232 WLF-ILYGIFVLCFMVAF----CLLTVNFFAWI-GLLIALFLTIKRIIALDISCSKQ 282 LF +LY + V A L+T N +++ G+L+ALFL ++ + A+ S S+Q Sbjct: 8 NLFRVLYRVRVTGDTQALKGERVLITPNHVSFLDGILLALFLPVRPVFAVYTSISQQ 64 >gnl|CDD|181034 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed. Length = 314 Score = 29.5 bits (67), Expect = 1.2 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 55 AGVLGWSTIFWYLFIYIV---GAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTR 111 +G GW+ + + G ++ G + T ND D ++D+ + RP+PSG + Sbjct: 53 SGAFGWTLENVLKLLAGMLLAGPLLC-GTSQTLNDYFDREVDA--INEPYRPIPSGAISL 109 Query: 112 FQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLY 150 L + ++ + P+V LF++ +Y Sbjct: 110 RWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIY 148 >gnl|CDD|149135 pfam07895, DUF1673, Protein of unknown function (DUF1673). This family contains hypothetical proteins of unknown function expressed by two archaeal species. Length = 204 Score = 28.5 bits (64), Expect = 2.1 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 27/123 (21%) Query: 110 TRFQALVFAVLQFLISFVLLLQF--NPFVICVGFAL-LFISLLY---------------- 150 + L+ ++ L F+++ Q N + G L L + L Sbjct: 55 RSNRLLLASIFLTLAYFLVISQLGINLLFLLAGLFLSLLLYLFTWKKQMIRYDALAKKPV 114 Query: 151 --PFSKRFILCP--QVVLGIGFAGG-VFVGWGALHASFSWPA---FFLCIGTIFWVVYFD 202 +K+ I+ ++L + ++ G + S A F + + W+VYF Sbjct: 115 IRYSNKKKIVRSLLVIILLLILLLLFLYYILGHFESLLSAQAILSFISGLLVLMWLVYFQ 174 Query: 203 TVY 205 +Y Sbjct: 175 LIY 177 >gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional. Length = 331 Score = 28.5 bits (64), Expect = 2.4 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 29/135 (21%) Query: 85 NDLVDHDIDSQVLRTRSRPLPSGQCTRFQAL----VFAVLQFLISFVLLLQFNP-----F 135 ND D ++D + +RP+PSG+ + +AL + +L + L L Sbjct: 70 NDYFDLELDR--VNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVI 127 Query: 136 VICVGFALLFISLLY---PFS-KRFILCPQVVLGIGFAGGVFVGWGALHASFS------- 184 + + A LF++ +Y P K+ IL +G + F+ + + +A FS Sbjct: 128 ISSI-LAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYG---FITFLSANALFSDIRPEVV 183 Query: 185 WPA---FFLCIGTIF 196 W A FF+ I I Sbjct: 184 WLAGLNFFMAIALII 198 >gnl|CDD|180580 PRK06473, PRK06473, NAD(P)H-quinone oxidoreductase subunit D4; Validated. Length = 500 Score = 28.1 bits (63), Expect = 2.6 Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 106 SGQCTRFQALVFAVLQFLISFVLLLQFNP 134 +G+ R ALV A + L+S VL QF+P Sbjct: 24 NGKLARSVALVIASVLLLLSLVLAFQFDP 52 >gnl|CDD|178114 PLN02498, PLN02498, omega-3 fatty acid desaturase. Length = 450 Score = 27.5 bits (61), Expect = 4.5 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%) Query: 162 VVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200 VV G+ A F W WP ++ GT+FW ++ Sbjct: 133 VVFGLAAAAAYFNNWVV------WPLYWFAQGTMFWALF 165 >gnl|CDD|151087 pfam10540, Membr_traf_MHD, Munc13 (mammalian uncoordinated) homology domain. Munc13 proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana, C. elegans, Drosophila melanogaster, mouse, rat and human, some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. Length = 119 Score = 26.9 bits (60), Expect = 6.8 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%) Query: 94 SQVLRTRSRPLPSGQCTRFQALVFAVLQFLISF 126 S R +PL QC R ++ LQ L F Sbjct: 51 SDKPREEEKPLSPRQCAR----LYVALQTLKQF 79 >gnl|CDD|148606 pfam07095, IgaA, Intracellular growth attenuator protein IgaA. This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the E. coli YrfF and P. mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in S. enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria. Length = 705 Score = 26.6 bits (59), Expect = 8.0 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 14/53 (26%) Query: 136 VICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAF 188 +IC F L F SL+ P + P + G G+ + G W F Sbjct: 209 LICAAFLLFFFSLISP----IVFLPWLAGG----AGLLLAAGL------WGLF 247 >gnl|CDD|182968 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional. Length = 919 Score = 26.7 bits (60), Expect = 8.1 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 10/32 (31%) Query: 118 AVLQ----FLISFVLLLQFNPFVICVGFALLF 145 LQ I+F++LL + +G ALLF Sbjct: 169 VRLQQYREIFIAFLMLL------LGIGLALLF 194 >gnl|CDD|169981 PRK09577, PRK09577, multidrug efflux protein; Reviewed. Length = 1032 Score = 26.4 bits (58), Expect = 9.3 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 161 QVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIF 196 Q+ +G G GGV + A F P FF+ +G +F Sbjct: 993 QIAIGTGVLGGVITA--TVLAVFLVPLFFVVVGRLF 1026 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 26.6 bits (59), Expect = 9.4 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 9/52 (17%) Query: 205 YAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFF 256 + +D L ++S +S + + +GIF+ F+ + TV F+ Sbjct: 1345 FCQYSYTNDFLEPISS---KYSGRWRN-----FGIFI-AFIFFNIIATVFFY 1387 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.337 0.147 0.510 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,258,901 Number of extensions: 351023 Number of successful extensions: 1841 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1778 Number of HSP's successfully gapped: 159 Length of query: 310 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 217 Effective length of database: 3,984,929 Effective search space: 864729593 Effective search space used: 864729593 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 57 (25.7 bits)