RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
(310 letters)
>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 314
Score = 293 bits (753), Expect = 4e-80
Identities = 142/300 (47%), Positives = 174/300 (58%), Gaps = 5/300 (1%)
Query: 8 KWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYL 67
WV D + + PY LARW GW L + PC WS LAA G+L W+L
Sbjct: 20 NWV-DRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLL----WHL 74
Query: 68 FIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFV 127
F++ VGAI RGA CT+ND+VD DID++V RTRSRPLPSGQ +R QA VF VLQ L+
Sbjct: 75 FLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLA 134
Query: 128 LLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPA 187
+LLQFN F I +G A L I YPF KR PQ LG+ F+ G +GW A S S A
Sbjct: 135 VLLQFNWFAIALGIASLAIVAAYPFMKRITWWPQFFLGLAFSWGALMGWAAHFGSLSLAA 194
Query: 188 FFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVA 247
L G+I W + +DT+YAHQDK+DD LIGV STARLF TK WL + YG+ VL +A
Sbjct: 195 VLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLA 254
Query: 248 FCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFL 307
F L V A +GLL A +I LDI QC F S G+LI + L++
Sbjct: 255 FWLAGVPLLALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKSNRDAGLLIFLGLVVGGLA 314
>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase,
proteobacterial. A fairly deep split by both clustering
(UPGMA) and phylogenetics (NJ tree) separates this group
(mostly Proteobacterial and mitochondrial), with several
characterized members, from another group (mostly
archaeal and Gram-positive bacterial) lacking
characterized members.
Length = 281
Score = 253 bits (647), Expect = 5e-68
Identities = 110/286 (38%), Positives = 153/286 (53%), Gaps = 7/286 (2%)
Query: 21 PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80
PY L R G L + PCLWS +LAA + L ++ VGAI+ RGA
Sbjct: 3 PYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIP-------PLYLLGLFTVGAILMRGA 55
Query: 81 ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140
C ND+ D D D QV RT+SRPL SG + QA++F ++Q L++ +LLQ NP I +G
Sbjct: 56 GCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG 115
Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200
A L + YPF KR PQ+VLG+ F G +GW A+ S A+ L + I W +
Sbjct: 116 VASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLG 175
Query: 201 FDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG 260
+DT+YA QDK+DD IGV STA F TK WL LY + +L +A + + ++G
Sbjct: 176 YDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLG 235
Query: 261 LLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF 306
L A L I++I LDI + C F + VG+L+ + +
Sbjct: 236 LAAAALLLIRQIATLDIRDPENCLKLFKANNYVGLLLFAGIALGWL 281
>gnl|CDD|183789 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 285
Score = 182 bits (465), Expect = 8e-47
Identities = 91/283 (32%), Positives = 146/283 (51%), Gaps = 8/283 (2%)
Query: 21 PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80
Y L R H G L P L+ +LA++ L L ++I+G+++ R A
Sbjct: 9 AYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPD--------ISLLVLFIIGSVLMRSA 60
Query: 81 ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140
C ND+ D ID V RT++RPL SG + QAL+ + LI+ V+LL N I +
Sbjct: 61 GCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS 120
Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200
F + + +LYP KRF PQ+ LG F G+ + + A+ A L IG IFW +
Sbjct: 121 FIAVILIVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAILLYIGCIFWTIG 180
Query: 201 FDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG 260
+DT+YA+QDKKDD IGV STA F +T+ ++ LY I ++ +++ + +++ ++
Sbjct: 181 YDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLA 240
Query: 261 LLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLII 303
+L A + + LD C F + VG+L+ + ++
Sbjct: 241 ILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVGLLLFLGAVL 283
>gnl|CDD|183804 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 290
Score = 176 bits (449), Expect = 5e-45
Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 9/256 (3%)
Query: 20 APYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRG 79
+ L RW G + ++P LW+ LAA G+ + I I+GA+ T
Sbjct: 10 LAIIRLLRWDKPAGRLILMIPALWAVFLAA-----HGLPPL----PLVGIIILGALATSA 60
Query: 80 AACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICV 139
A C NDL D DID QV RTR RPL S + + +V A++ L + L NP +
Sbjct: 61 AGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWL 120
Query: 140 GFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVV 199
A + + LYP +KR PQ+VL I + V + W A+ + L T+FW +
Sbjct: 121 CVAAVPVIFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDLGTWLLWAATVFWTL 180
Query: 200 YFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWI 259
FDTVYA D++DD IGVNS+A F + + + + V + LL ++ WI
Sbjct: 181 GFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFWI 240
Query: 260 GLLIALFLTIKRIIAL 275
GL IA L ++ L
Sbjct: 241 GLAIAAVLWARQYRRL 256
>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase.
Length = 289
Score = 174 bits (442), Expect = 3e-44
Identities = 103/284 (36%), Positives = 137/284 (48%), Gaps = 12/284 (4%)
Query: 17 SAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIV 76
++ PY LAR G L PC+WS LAA P G L ++ GA++
Sbjct: 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPP-------GSLPDLKMLALFGCGALL 56
Query: 77 TRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFV 136
RGA CT NDL+D DID +V RT+ RP+ SG T FQ + F Q L+ +LLQ N +
Sbjct: 57 LRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYS 116
Query: 137 ICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFF-LCIGTI 195
+G + L + YP KRF PQ LG+ F G +GW A+ S L +
Sbjct: 117 RILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVKGSLDPAVVLPLYASGV 176
Query: 196 FWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL--FILYGIFVLCFMVAFCLLTV 253
W + +DT+YAHQDK+DD +GV STA F TKLWL F I L L
Sbjct: 177 CWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGW 236
Query: 254 NFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILI 297
++A GL A +I +D+S C F S G ++
Sbjct: 237 PYYA--GLAAAAGHLAWQIQTVDLSSRADCNRKFVSNKWFGAIV 278
>gnl|CDD|183790 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 170 bits (433), Expect = 4e-43
Identities = 87/249 (34%), Positives = 126/249 (50%), Gaps = 9/249 (3%)
Query: 21 PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80
Y L R G L + P LW+ LAA G+ W L ++++G + R A
Sbjct: 7 AYARLMRLDKPIGTLLLLWPTLWALWLAA-----DGIPDL----WVLVVFVLGVFLMRAA 57
Query: 81 ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140
C ND D D D V RT++RPL SG + +AL V+ L++F+L+L N I +
Sbjct: 58 GCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS 117
Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200
A L ++ +YPF KR+ PQVVLG F G+ + + A+ S A+ L + I W V
Sbjct: 118 VAALALAWIYPFMKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVPLEAWLLFLANILWTVA 177
Query: 201 FDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG 260
+DT YA D+ DD IG+ STA LF KL + +L + A LL + + + G
Sbjct: 178 YDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYWG 237
Query: 261 LLIALFLTI 269
LL+A L +
Sbjct: 238 LLVAAALFV 246
>gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed.
Length = 294
Score = 125 bits (317), Expect = 1e-29
Identities = 94/302 (31%), Positives = 139/302 (46%), Gaps = 33/302 (10%)
Query: 19 IAPYVYLARWHSSTGWHLAVLPCLWSTVL--AAYPLRRAGVLGWSTIFWYLFIYIVGAIV 76
++P+ L RW+ TG + ++P WS L +A P L + I+G +
Sbjct: 7 LSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS-----------LLLLLLIILGGLA 55
Query: 77 TRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISF--VLLLQFNP 134
GA C NDL D ID +V RT++RPL G+ + A ++ L+S VL L
Sbjct: 56 VSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPS 115
Query: 135 FVICVG---FALLFISLLYPFSKRFILCPQVVLGI--GFAGGVFVGWGALHASF--SWPA 187
+C+ AL I L+YP +KR+ PQ +L + GFA V + W A S WP
Sbjct: 116 RNLCLSLAFLALPPI-LIYPSAKRWFAYPQAILALCWGFA--VLIPWAAAEGSLNGGWPL 172
Query: 188 FFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVA 247
F + T+ W FDTVYA D++DD IG+NS+A + I Y F+ +A
Sbjct: 173 LFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICY--FLTSIFLA 230
Query: 248 FCLLT--VNFFAWIGLLIALFLTIKRIIAL---DISCSKQCCSFFHSAGVVGILILICLI 302
V F W LIA + I+ L S F + ++G L+L+ LI
Sbjct: 231 LAAFIAQVGFIFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQV-ILGSLLLLGLI 289
Query: 303 IS 304
++
Sbjct: 290 LA 291
>gnl|CDD|171798 PRK12886, ubiA, prenyltransferase; Reviewed.
Length = 291
Score = 105 bits (265), Expect = 1e-23
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 5/214 (2%)
Query: 56 GVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQAL 115
G+ G S + W L +VGA R AA +N L+D +ID++ RT R +P+G ++ A+
Sbjct: 37 GLPGASQLDWILMA-MVGA---RTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAI 92
Query: 116 VFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVG 175
+F VL L+ NP + + LF LLY + KRF VVLG A
Sbjct: 93 LFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGA 152
Query: 176 WGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFI 235
W A+ + PA L + +FWV FD +YA QD + D G++S LW+
Sbjct: 153 WIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIAR 212
Query: 236 LYGIFVLCFMV-AFCLLTVNFFAWIGLLIALFLT 268
++ + ++ F+ + + GL + L
Sbjct: 213 VFHLLMIGFLFALGISAGLGPWFLAGLAVTGILL 246
>gnl|CDD|162380 TIGR01475, ubiA_other, putative 4-hydroxybenzoate
polyprenyltransferase. A fairly deep split separates
this polyprenyltransferase subfamily from the set of
mitochondrial and proteobacterial 4-hydroxybenzoate
polyprenyltransferases, described in TIGR01474.
Protoheme IX farnesyltransferase (heme O synthase)
(TIGR01473) is more distantly related. Because no
species appears to have both this protein and a member
of TIGR01474, it is likely that This model represents
4-hydroxybenzoate polyprenyltransferase, a critical
enzyme of ubiquinone biosynthesis, in the Archaea,
Gram-positive bacteria, Aquifex aeolicus, the
Chlamydias, etc.
Length = 282
Score = 97.0 bits (242), Expect = 5e-21
Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 4/248 (1%)
Query: 64 FWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFL 123
L + ++ A+ R AA +N ++D ID++ RT++RPL SG ++ +A +L
Sbjct: 35 LKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLA 94
Query: 124 ISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASF 183
+ NP + +L + ++YP++KRF VLG + GW A+ +
Sbjct: 95 LFLSASYFLNPLAFILSPLVLLVLIIYPYTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTI 154
Query: 184 SWP--AFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFV 241
S+ A+ L IG FW+ FD +YA QD + D G++S F + L + L +
Sbjct: 155 SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVIT 214
Query: 242 LCFMVAFCLLTVNFFAWI--GLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILI 299
++ N + + +LI L L + I SK +FF++ G + I LI
Sbjct: 215 FILLLLVGFYVGNGYIALLALILIGLILAYEHYIVDPGDQSKIQRAFFYANGFLSITFLI 274
Query: 300 CLIISLFL 307
+II + L
Sbjct: 275 GVIIDVLL 282
>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed.
Length = 284
Score = 87.5 bits (217), Expect = 4e-18
Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 13/257 (5%)
Query: 54 RAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQ 113
L T+ +VGA R A N ++D +ID++ RT R L +G +
Sbjct: 37 HWADLLLVTV------AMVGA---RTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRT 87
Query: 114 ALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVF 173
A A++ + NP + + + ++YP++KRF P +LG+ A G
Sbjct: 88 AWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPV 147
Query: 174 VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL 233
W A+ ++SWPA L + W+ FD +YA QD + D IGV S F + LW
Sbjct: 148 GAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWA 207
Query: 234 FILYGIFVLCFMVAFCLLT-VNFFAWIGLLI--ALFLTIKRIIALDISCSKQCCSFFHSA 290
+ + V F L WIGL I F I++ S+ +FF +
Sbjct: 208 SRVAHVVTFALFVWFGLAVGFGALWWIGLAITAGAFAYEHAIVSPT-DLSRVNRAFFTAN 266
Query: 291 GVVGILILICLIISLFL 307
G VGI + ++ L +
Sbjct: 267 GFVGIALFGFALLDLLV 283
>gnl|CDD|183806 PRK12874, ubiA, prenyltransferase; Reviewed.
Length = 291
Score = 84.7 bits (210), Expect = 3e-17
Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 9/265 (3%)
Query: 46 VLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLP 105
++A+ G G+ L + I+ A+ R A +N LVD DID RT +RP
Sbjct: 32 IVASKQKNDTGWFGFKL----LILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSV 87
Query: 106 SGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLG 165
G+ + ++F VL LI + NP + F L + Y + KRF +VLG
Sbjct: 88 DGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLG 147
Query: 166 IGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLF 225
+ G A+ + FL +G +FWV FD +Y+ QD + D+ G++S F
Sbjct: 148 LSLGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKF 207
Query: 226 SYQTKLWLFILYGIFVLCFMVAFCLLT-VNFFAWIGLLIALFLTIK--RIIALDISCSKQ 282
+ L++ L+ + + F + F + FA++G++++ + + ++ D K
Sbjct: 208 GEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAYLGVIVSALILLYEHYLVRKDF--KKI 265
Query: 283 CCSFFHSAGVVGILILICLIISLFL 307
+FF G +GI+ I +++ +
Sbjct: 266 DKAFFTLNGYLGIVFFIFIVLDVLF 290
>gnl|CDD|179840 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.
Length = 296
Score = 72.9 bits (180), Expect = 9e-14
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 9/140 (6%)
Query: 64 FWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFL 123
L + ++G + GAA N+ +D DID+++ RT++RPL +G+ + +AL+F ++ +
Sbjct: 43 LLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGV 102
Query: 124 ISFVLLLQF-NPFVICVGFA-LLFISLLYP-FSKRFILCPQ-VVLGIGFAGG--VFVGWG 177
+ F+LL F NP + A + F ++Y + KR PQ +V+G G AG +GW
Sbjct: 103 LGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKR--RTPQNIVIG-GAAGAMPPLIGWA 159
Query: 178 ALHASFSWPAFFLCIGTIFW 197
A+ S SW A L + W
Sbjct: 160 AVTGSLSWEALILFLIIFLW 179
>gnl|CDD|162379 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model
describes protoheme IX farnesyltransferase, also called
heme O synthase, an enzyme that creates an intermediate
in the biosynthesis of heme A. Prior to the description
of its enzymatic function, this protein was often called
a cytochrome o ubiquinol oxidase assembly factor.
Length = 280
Score = 67.3 bits (165), Expect = 5e-12
Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 17/223 (7%)
Query: 59 GWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFA 118
G L + ++G + +A +N +D DID ++ RTR+RPL +G+ + +AL F
Sbjct: 29 GALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFG 88
Query: 119 VLQFLISFVLLLQF-NPFVICVGFALLFI-SLLY-PFSKRFILCPQ-VVLGIGFAGGV-- 172
+L ++ +L F NP +G +F ++Y + KR PQ V+G GFAG V
Sbjct: 89 LLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRR--TPQNTVIG-GFAGAVPP 145
Query: 173 FVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIG-----VNSTARLFSY 227
+GW A+ S S A+ L W A + K D G V R+
Sbjct: 146 LIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKR 205
Query: 228 QTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIK 270
Q L+ L + ++AF T + + L+
Sbjct: 206 QIALYTAAL---LPVSLLLAFLGGTGWLYLIVATLLGALFLYL 245
>gnl|CDD|183862 PRK13106, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 62.4 bits (152), Expect = 2e-10
Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 23/211 (10%)
Query: 65 WYLFIYIVGAIV-TRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFL 123
I I A+ R A T ++L D +ID++ RT++RPL +G +A +
Sbjct: 48 ISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLI 107
Query: 124 ISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQ----VVLGIGFAGGVFVGWGAL 179
+ F N + + + + I++ YP+ KR+ + G+ G G
Sbjct: 108 LFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLGLY 167
Query: 180 HASF-----SWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLF 234
S P F+ IGTI W FD D + D +G++S A +
Sbjct: 168 ANSLIQVLLRVPWLFV-IGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVL--------- 217
Query: 235 ILYGIFVLCFMVAFCLLTVNFFAWIGLLIAL 265
G + L F L +V L L
Sbjct: 218 ---GKWALTFAGLNQLFSVVLDLLGDLYYGL 245
>gnl|CDD|106021 PRK12895, ubiA, prenyltransferase; Reviewed.
Length = 286
Score = 60.6 bits (147), Expect = 5e-10
Identities = 53/247 (21%), Positives = 107/247 (43%), Gaps = 4/247 (1%)
Query: 63 IFWYLFIYIVGAIVT-RGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQ 121
I + I+ A V+ R +A + N + D R + L SG+ +A+ F ++
Sbjct: 34 IHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIF 93
Query: 122 FLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHA 181
I + N V + ++F+ ++ PF KR+ + +G GV G+ A+
Sbjct: 94 IAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIP 153
Query: 182 SFSW--PAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGI 239
+F + + + I + W+ FD +Y D + D++ G+ + + + L++ ++ I
Sbjct: 154 AFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHI 213
Query: 240 FVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCC-SFFHSAGVVGILIL 298
L + + L+I L I + + +D SFF++ +G + L
Sbjct: 214 SSLILFWISGIYIRTLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFIGFVFL 273
Query: 299 ICLIISL 305
I +I+SL
Sbjct: 274 IGIILSL 280
>gnl|CDD|183803 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed.
Length = 279
Score = 48.5 bits (116), Expect = 2e-06
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 15/141 (10%)
Query: 67 LFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVF----AVLQF 122
L ++G + G + +N ++ DID + RT RP P G R +AL + L
Sbjct: 38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGT 97
Query: 123 LISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGI---GFAGGV--FVGWG 177
+ F+LL P + Y L P+ L I GFAG G+
Sbjct: 98 ALGFLLL---GPL---TALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYA 151
Query: 178 ALHASFSWPAFFLCIGTIFWV 198
+ S A L W
Sbjct: 152 SGTGSLDLEAVLLSFLIYLWT 172
>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.
Length = 306
Score = 48.1 bits (115), Expect = 3e-06
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 64 FWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFL 123
+ ++G + + C N+ +D DID+++ RTR+R +G+ + +AL F + +
Sbjct: 46 PVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGV 105
Query: 124 ISFVLLLQF-NPF-VICVGFALLFISLLYP-FSKRFILCPQVVLGIGFAGGV--FVGWGA 178
F LL F NP + F + +Y + KR L +G + VG+ A
Sbjct: 106 AGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRN--SVYGTLVGSLSGAMPPVVGYCA 163
Query: 179 LHASFSWPAFFLCIGTIFW 197
+ F A L + W
Sbjct: 164 VTGQFDAGALILLLMFSLW 182
>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed.
Length = 279
Score = 43.8 bits (104), Expect = 6e-05
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 72 VGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQ 131
+ A G+A ND D+++D + R RP+PSG+ +R +AL+ A+L F++ +
Sbjct: 44 LTAFFASGSANALNDYFDYEVDR-INRP-DRPIPSGRISRREALLLAILLFILGLIAAYL 101
Query: 132 FNPFVICVGFALLFISLLYPFS-KRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFL 190
+P V + + +LY + K + G G ++V +F F+
Sbjct: 102 ISPLAFLVVILVSVLGILYNWKLKEY----------GLIGNLYV-------AFLTGMTFI 144
Query: 191 CIGTIF 196
G
Sbjct: 145 FGGIAV 150
>gnl|CDD|178375 PLN02776, PLN02776, prenyltransferase.
Length = 341
Score = 41.7 bits (98), Expect = 3e-04
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 44 STVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRP 103
+T A + L + + W G ++ +A T N + + DS++ RT RP
Sbjct: 12 ATSGAGFVLGSGEAIDLPGLGWT----CAGTMLCAASANTLNQVFEVKNDSKMKRTMRRP 67
Query: 104 LPSGQCTRFQALVFAV 119
LPSG+ + A+ +AV
Sbjct: 68 LPSGRISVPHAVAWAV 83
>gnl|CDD|171790 PRK12876, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 41.3 bits (97), Expect = 3e-04
Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 21/162 (12%)
Query: 59 GWSTIFW----YLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQA 114
G TI + VG IV N ++D ID + RT SR LP+ + +
Sbjct: 45 GIKTISLGGSAFFCARTVGIIV--------NQIIDCAIDKKNPRTSSRVLPAKLLSINFS 96
Query: 115 LVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFV 174
++ L + L NP + + ++YP++KR +LG+ + + +
Sbjct: 97 MLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILM 156
Query: 175 GWGALHASFSWPAFFLCIGTIFWVVYF-------DTVYAHQD 209
+ A+ + +F L W + F D +YA QD
Sbjct: 157 NFFAI--IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQD 196
>gnl|CDD|183439 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate
phosphoribosyltransferase; Provisional.
Length = 295
Score = 39.5 bits (93), Expect = 0.001
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 85 NDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALL 144
ND+ D + D R+RP+ SG + A + AV+ + S L +P + V L
Sbjct: 66 NDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLLVYL 125
Query: 145 FISLLYPFS-KRFILCPQVVLGIGF-----AGGVFVGWGALHASFSWPAFFLC--IGTIF 196
++L Y F K + + GF AGGV A+ S P LC + ++F
Sbjct: 126 VLNLAYSFKLKHQPVLDVFCIASGFVLRAIAGGV-----AIGVPLS-PWLLLCTALLSLF 179
Query: 197 WV 198
Sbjct: 180 LA 181
>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed.
Length = 276
Score = 39.2 bits (92), Expect = 0.001
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 68 FIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFV 127
+ + T GA ND D +ID + RP+PSG + AL F++L F
Sbjct: 42 LAFAAVFLAT-GAGNAINDYFDREIDR--INRPDRPIPSGAVSPRGALAFSILLFAAGVA 98
Query: 128 LLLQFNPFVICVGFALLFISLLYPFSKRF 156
L P +C+ AL LL +++
Sbjct: 99 LAFLLPP--LCLAIALFNSLLLVLYAETL 125
>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed.
Length = 277
Score = 37.4 bits (87), Expect = 0.005
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 83 TWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVL--LLQFNPFVICVG 140
T ND D++ID + +RPLP G +R AL +++L F + L L+ F+ +G
Sbjct: 55 TINDYFDYEIDK--INRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALG 112
Query: 141 -FALLFI 146
+ L+F+
Sbjct: 113 AYVLMFL 119
>gnl|CDD|181313 PRK08238, PRK08238, hypothetical protein; Validated.
Length = 479
Score = 36.4 bits (85), Expect = 0.009
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 84 WNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFAL 143
NDL+D + D R R RP SG L A L L L L P + V A
Sbjct: 245 LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAY 304
Query: 144 LFISLLYPFS-KRFILCPQVVLGIGF-----AGGVFVG 175
L ++L Y KR +L + L + AG +G
Sbjct: 305 LALTLAYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIG 342
>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll
synthetase. This model describes a subfamily of a large
family of polyprenyltransferases (pfam01040) that also
includes 4-hydroxybenzoate octaprenyltransferase and
protoheme IX farnesyltransferase (heme O synthase).
Members of this family are found exclusively in
photosynthetic organisms, including a single copy in
Arabidopsis thaliana.
Length = 283
Score = 34.8 bits (80), Expect = 0.030
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 16/144 (11%)
Query: 55 AGVLGWSTIFWYLFI---YIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCT- 110
+G W+L + + G + T G + + ND D D+D+ + RP+PSG +
Sbjct: 26 SGYERGFPEHWWLMLLGMLMAGPLGT-GFSQSINDYFDRDVDA--INEPQRPIPSGIISL 82
Query: 111 ---RFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF--SKRFILCPQVVLG 165
R+ LV V L++ VL VG L I + P + L P V G
Sbjct: 83 REVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAV-G 141
Query: 166 IGFAGGVFVGWGALHASFSWPAFF 189
+ + G + W A HA F+ +
Sbjct: 142 LSYEG---LPWMAGHAIFAPLTWQ 162
>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate
synthase; Reviewed.
Length = 279
Score = 33.8 bits (78), Expect = 0.058
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 85 NDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALL 144
ND+ D +ID + RP+PSG+ + +A +F++ F++ +L + N + ALL
Sbjct: 57 NDIYDIEIDK--INKPERPIPSGRISLKEAKIFSITLFIVGLILSIFIN--IYAFLIALL 112
Query: 145 FISLLYPFSKRF 156
LLY ++K
Sbjct: 113 NSILLYLYAKDL 124
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 29.7 bits (67), Expect = 1.1
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 232 WLF-ILYGIFVLCFMVAF----CLLTVNFFAWI-GLLIALFLTIKRIIALDISCSKQ 282
LF +LY + V A L+T N +++ G+L+ALFL ++ + A+ S S+Q
Sbjct: 8 NLFRVLYRVRVTGDTQALKGERVLITPNHVSFLDGILLALFLPVRPVFAVYTSISQQ 64
>gnl|CDD|181034 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase;
Reviewed.
Length = 314
Score = 29.5 bits (67), Expect = 1.2
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 55 AGVLGWSTIFWYLFIYIV---GAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTR 111
+G GW+ + + G ++ G + T ND D ++D+ + RP+PSG +
Sbjct: 53 SGAFGWTLENVLKLLAGMLLAGPLLC-GTSQTLNDYFDREVDA--INEPYRPIPSGAISL 109
Query: 112 FQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLY 150
L + ++ + P+V LF++ +Y
Sbjct: 110 RWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIY 148
>gnl|CDD|149135 pfam07895, DUF1673, Protein of unknown function (DUF1673). This
family contains hypothetical proteins of unknown
function expressed by two archaeal species.
Length = 204
Score = 28.5 bits (64), Expect = 2.1
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 27/123 (21%)
Query: 110 TRFQALVFAVLQFLISFVLLLQF--NPFVICVGFAL-LFISLLY---------------- 150
+ L+ ++ L F+++ Q N + G L L + L
Sbjct: 55 RSNRLLLASIFLTLAYFLVISQLGINLLFLLAGLFLSLLLYLFTWKKQMIRYDALAKKPV 114
Query: 151 --PFSKRFILCP--QVVLGIGFAGG-VFVGWGALHASFSWPA---FFLCIGTIFWVVYFD 202
+K+ I+ ++L + ++ G + S A F + + W+VYF
Sbjct: 115 IRYSNKKKIVRSLLVIILLLILLLLFLYYILGHFESLLSAQAILSFISGLLVLMWLVYFQ 174
Query: 203 TVY 205
+Y
Sbjct: 175 LIY 177
>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional.
Length = 331
Score = 28.5 bits (64), Expect = 2.4
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 29/135 (21%)
Query: 85 NDLVDHDIDSQVLRTRSRPLPSGQCTRFQAL----VFAVLQFLISFVLLLQFNP-----F 135
ND D ++D + +RP+PSG+ + +AL + +L + L L
Sbjct: 70 NDYFDLELDR--VNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVI 127
Query: 136 VICVGFALLFISLLY---PFS-KRFILCPQVVLGIGFAGGVFVGWGALHASFS------- 184
+ + A LF++ +Y P K+ IL +G + F+ + + +A FS
Sbjct: 128 ISSI-LAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYG---FITFLSANALFSDIRPEVV 183
Query: 185 WPA---FFLCIGTIF 196
W A FF+ I I
Sbjct: 184 WLAGLNFFMAIALII 198
>gnl|CDD|180580 PRK06473, PRK06473, NAD(P)H-quinone oxidoreductase subunit D4;
Validated.
Length = 500
Score = 28.1 bits (63), Expect = 2.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 106 SGQCTRFQALVFAVLQFLISFVLLLQFNP 134
+G+ R ALV A + L+S VL QF+P
Sbjct: 24 NGKLARSVALVIASVLLLLSLVLAFQFDP 52
>gnl|CDD|178114 PLN02498, PLN02498, omega-3 fatty acid desaturase.
Length = 450
Score = 27.5 bits (61), Expect = 4.5
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 162 VVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVY 200
VV G+ A F W WP ++ GT+FW ++
Sbjct: 133 VVFGLAAAAAYFNNWVV------WPLYWFAQGTMFWALF 165
>gnl|CDD|151087 pfam10540, Membr_traf_MHD, Munc13 (mammalian uncoordinated)
homology domain. Munc13 proteins constitute a family of
three highly homologous molecules (Munc13-1, Munc13-2
and Munc13-3) with homology to Caenorhabditis elegans
unc-13p. Munc13 proteins contain a phorbol ester-binding
C1 domain and two C2 domains, which are
Ca2+/phospholipid binding domains. Sequence analyses
have uncovered two regions called Munc13 homology
domains 1 (MHD1) and 2 (MHD2) that are arranged between
two flanking C2 domains. MHD1 and MHD2 domains are
present in a wide variety of proteins from Arabidopsis
thaliana, C. elegans, Drosophila melanogaster, mouse,
rat and human, some of which may function in a
Munc13-like manner to regulate membrane trafficking. The
MHD1 and MHD2 domains are predicted to be alpha-helical.
Length = 119
Score = 26.9 bits (60), Expect = 6.8
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 94 SQVLRTRSRPLPSGQCTRFQALVFAVLQFLISF 126
S R +PL QC R ++ LQ L F
Sbjct: 51 SDKPREEEKPLSPRQCAR----LYVALQTLKQF 79
>gnl|CDD|148606 pfam07095, IgaA, Intracellular growth attenuator protein IgaA.
This family consists of several bacterial intracellular
growth attenuator (IgaA) proteins. IgaA is involved in
negative control of bacterial proliferation within
fibroblasts. IgaA is homologous to the E. coli YrfF and
P. mirabilis UmoB proteins. Whereas the biological
function of YrfF is currently unknown, UmoB has been
shown elsewhere to act as a positive regulator of FlhDC,
the master regulator of flagella and swarming. FlhDC has
been shown to repress cell division during P. mirabilis
swarming, suggesting that UmoB could repress cell
division via FlhDC. This biological function, if
maintained in S. enterica, could sustain a putative
negative control of cell division and growth exerted by
IgaA in intracellular bacteria.
Length = 705
Score = 26.6 bits (59), Expect = 8.0
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 14/53 (26%)
Query: 136 VICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAF 188
+IC F L F SL+ P + P + G G+ + G W F
Sbjct: 209 LICAAFLLFFFSLISP----IVFLPWLAGG----AGLLLAAGL------WGLF 247
>gnl|CDD|182968 PRK11107, PRK11107, hybrid sensory histidine kinase BarA;
Provisional.
Length = 919
Score = 26.7 bits (60), Expect = 8.1
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 10/32 (31%)
Query: 118 AVLQ----FLISFVLLLQFNPFVICVGFALLF 145
LQ I+F++LL + +G ALLF
Sbjct: 169 VRLQQYREIFIAFLMLL------LGIGLALLF 194
>gnl|CDD|169981 PRK09577, PRK09577, multidrug efflux protein; Reviewed.
Length = 1032
Score = 26.4 bits (58), Expect = 9.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 161 QVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIF 196
Q+ +G G GGV + A F P FF+ +G +F
Sbjct: 993 QIAIGTGVLGGVITA--TVLAVFLVPLFFVVVGRLF 1026
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
Length = 1394
Score = 26.6 bits (59), Expect = 9.4
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 205 YAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFF 256
+ +D L ++S +S + + +GIF+ F+ + TV F+
Sbjct: 1345 FCQYSYTNDFLEPISS---KYSGRWRN-----FGIFI-AFIFFNIIATVFFY 1387
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.337 0.147 0.510
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,258,901
Number of extensions: 351023
Number of successful extensions: 1841
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1778
Number of HSP's successfully gapped: 159
Length of query: 310
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 217
Effective length of database: 3,984,929
Effective search space: 864729593
Effective search space used: 864729593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 57 (25.7 bits)