RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (310 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 29.4 bits (65), Expect = 0.69
 Identities = 17/136 (12%), Positives = 26/136 (19%), Gaps = 28/136 (20%)

Query: 155 RFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDE 214
              L P                  L          +   T     +       +  K D 
Sbjct: 192 AICLAPSR---------------ELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDA 236

Query: 215 LIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIA 274
            I + +   +     +  L     I V     A  +L                   RI  
Sbjct: 237 QIVIGTPGTVMDLMKRRQLD-ARDIKVFVLDEADNMLDQQGLGDQ---------SMRIKH 286

Query: 275 LDISCSKQCCSFFHSA 290
           L     +       SA
Sbjct: 287 L---LPRNTQIVLFSA 299


>2wy3_B UL16, uncharacterized protein UL16; immune system-viral
           protein complex, immune response, innate immunity,
           structural mimicry; HET: NAG PEU; 1.80A {Human
           herpesvirus 5 strain AD169} (B:)
          Length = 158

 Score = 28.1 bits (62), Expect = 1.7
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLF 234
            ++H   +W    +CI     + Y++ V       +DE+IGV  T +       LWL+
Sbjct: 20  ASIHPGETWTLHGMCIS----ICYYENV------TEDEIIGVAFTWQHNESVVDLWLY 67


>1zye_A Thioredoxin-dependent peroxide reductase; catenane,
           dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos
           taurus} (A:)
          Length = 220

 Score = 25.4 bits (54), Expect = 9.3
 Identities = 10/77 (12%), Positives = 23/77 (29%)

Query: 22  YVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAA 81
           Y+ L  +     +        +S   + +      V+  S    +  +  +      G  
Sbjct: 58  YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGL 117

Query: 82  CTWNDLVDHDIDSQVLR 98
              N  +  D+  Q+ R
Sbjct: 118 GHMNIALLSDLTKQISR 134


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.337    0.147    0.510 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,486,865
Number of extensions: 108847
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 55
Length of query: 310
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 222
Effective length of database: 1,981,209
Effective search space: 439828398
Effective search space used: 439828398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 54 (25.3 bits)