RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62] (310 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.8 bits (90), Expect = 0.002 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 66/164 (40%) Query: 82 CTWNDLVDHDIDS--QVLRTRSRPLPSGQCTRF-QAL-VFAVLQ---------FL----I 124 T++ LV I + L R F Q L + L+ +L I Sbjct: 178 QTYHVLVGDLIKFSAETLSELIR-TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236 Query: 125 SFVL--LLQFNPF-VICVGFALLFISLLYPFSKRFILCPQVVLGI--G-----FAG---- 170 S L ++Q + V K +LG G G Sbjct: 237 SCPLIGVIQLAHYVVTA---------------K--------LLGFTPGELRSYLKGATGH 273 Query: 171 --GVFVGWGALHASFSWPAFF----LCIGTIFWVVYFDTVYAHQ 208 G+ A+ + SW +FF I +F++ V ++ Sbjct: 274 SQGLVTA-VAIAETDSWESFFVSVRKAITVLFFI----GVRCYE 312 Score = 27.2 bits (60), Expect = 5.5 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 50/127 (39%) Query: 200 YFD------TVYAH--QDKKDDELIGVNSTARLFS-----------YQTKL----WLFIL 236 YF+ Y D LI S L + L WL Sbjct: 169 YFEELRDLYQTYHVLVGD-----LIKF-SAETLSELIRTTLDAEKVFTQGLNILEWLENP 222 Query: 237 YGI----FVLCFMVAFCLLTVNFFAWIGLL-IALFLTIKRIIALDISCSKQCCSFF---- 287 ++L ++ L IG++ +A ++ ++ L + + S+ Sbjct: 223 SNTPDKDYLLSIPISCPL--------IGVIQLAHYVVTAKL--LGFT-PGELRSYLKGAT 271 Query: 288 -HSAGVV 293 HS G+V Sbjct: 272 GHSQGLV 278 >2wy3_B UL16, uncharacterized protein UL16; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Human herpesvirus 5 strain AD169} Length = 158 Score = 28.2 bits (62), Expect = 2.6 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 10/58 (17%) Query: 177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLF 234 ++H +W +CI + Y++ V +DE+IGV T + LWL+ Sbjct: 20 ASIHPGETWTLHGMCIS----ICYYENV------TEDEIIGVAFTWQHNESVVDLWLY 67 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.337 0.147 0.510 Gapped Lambda K H 0.267 0.0486 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,797,011 Number of extensions: 124474 Number of successful extensions: 471 Number of sequences better than 10.0: 1 Number of HSP's gapped: 457 Number of HSP's successfully gapped: 53 Length of query: 310 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 218 Effective length of database: 3,462,782 Effective search space: 754886476 Effective search space used: 754886476 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 56 (25.9 bits)