RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (310 letters)



>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain
           {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
          Length = 321

 Score = 27.1 bits (60), Expect = 1.9
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 84  WNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFL 123
           WN  V+  I     ++   P+  GQC  F   +   L+ L
Sbjct: 109 WNGSVE--ILKNWKKSGLSPVRYGQCWVFAGTLNTALRSL 146


>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 350

 Score = 24.6 bits (53), Expect = 10.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 261 LLIALFLTIKRIIALDISCSKQCCSFFHSAGVVG 294
           LLI L L +  I    +   K C     S GV+G
Sbjct: 220 LLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIG 253


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.337    0.147    0.510 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,227,262
Number of extensions: 55876
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 28
Length of query: 310
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,240,546
Effective search space: 279122850
Effective search space used: 279122850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 53 (24.9 bits)