HHsearch alignment for GI: 254780206 and conserved domain: COG0458
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=99.94 E-value=1.5e-24 Score=197.52 Aligned_cols=363 Identities=19% Similarity=0.256 Sum_probs=235.4
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCH
Q ss_conf 958998865--88999999998589967899954983575----117055128789899999998718979999--7955
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPEL 72 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~ 72 (424)
T Consensus 6 i~Igqa~efdysG~qa-c~aLkeeg~--~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt 82 (400)
T COG0458 6 IVIGQAAEFDYSGTQA-CKALKEEGY--GVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQT 82 (400)
T ss_pred EEEEEEEEECHHHHHH-HHHHHHCCC--EEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 0667641114367899-999986697--5999728872124780005302662473788999997537662632468741
Q ss_pred HHHHH--HHH--HHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 78748--998--98605880670106665552010235788876531011112234401111121012420256304653
Q gi|254780206|r 73 PLVNG--ISD--ALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLC 148 (424)
Q Consensus 73 pL~~g--i~d--~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~a 148 (424)
T Consensus 83 ~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~l 161 (400)
T COG0458 83 ALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGL 161 (400)
T ss_pred HHHHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 34688998772645644977994587895564209999999998399988-41235677776557636997798068578
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHCC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4300023235677888788751445-3177788775205-7523442157763103520001113566544444344300
Q gi|254780206|r 149 AGKGVVVAATVDEATSAIDRCFQQI-NSTVIIEEYLEGF-EVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGAC 226 (424)
Q Consensus 149 gGkGV~i~~~~~e~~~~~~~~~~~~-~~~VliEefl~G~-E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~ 226 (424)
T Consensus 162 GG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~me--n~--dp~gvhtgdsi~v 237 (400)
T COG0458 162 GGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNME--NL--DPMGVHTGDSITV 237 (400)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEECC--CC--CCCCCCCCCEEEE
T ss_conf 8875168718999999987322447642001244216856999999983799879998678--65--6566444323652
Q ss_pred ECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE--EEEEEEEEEECCCCCEEEEECCCCCCHHHHH
Q ss_conf 00123443222010000089999986204623566445448985570--4899988651477510443326544115666
Q gi|254780206|r 227 SPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG--PYLIEYNVRFGDPECQAMMMRLESDILEILN 304 (424)
Q Consensus 227 ~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g--p~viE~N~R~GDPE~q~ilp~L~~dl~~il~ 304 (424)
T Consensus 238 apaqtl~d~eyq~~-r~---~~~~iir~igi~--G~~niQ~av~~~~~~~~viEvNpRvSrs---saLaskAtg-ypia~ 307 (400)
T COG0458 238 APAQTLTDKEYQML-RD---AAIKVIREIGIE--GGCNIQFAVDPGGGELYVIEINPRVSRS---SALASKATG-YPIAK 307 (400)
T ss_pred CCCCCCCCHHHHHH-HH---HHHHHHHHHCCC--CCCCEEEEECCCCCEEEEEEECCCCCCC---CHHHHHCCC-CHHHH
T ss_conf 14556543788998-88---777788874114--7873148986998559999956876764---031554468-76999
Q ss_pred H---HHHC-CCCCCCCCCCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEE
Q ss_conf 5---4201-3333212344442067542254466-877579762487666898689983358778879981880799999
Q gi|254780206|r 305 S---CVHG-NLHNTHINWKAEYALTVVVATKGYP-EEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATA 379 (424)
Q Consensus 305 ~---~~~g-~L~~~~~~~~~~~~v~Vvlas~GYP-~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGRVL~vv~ 379 (424)
T Consensus 308 vaakla~g~~l~Ei~----n~i--t~----~t~a~fePsldyvv~k~pr~-~f~kf~~~-~~~l~~~mks-~gev---m~ 371 (400)
T COG0458 308 VAAKLAVGYTLDEIR----NDI--TG----RTPASFEPSLDYVVTKIPRF-DFEKFPGA-DRRLGTQMKS-VGEV---MA 371 (400)
T ss_pred HHHHHHCCCCCHHHC----CCC--CC----CCCCCCCCCCCEEEEECCCC-CCCCCCCC-CCCEEEEEEC-CCEE---EE
T ss_conf 999750356706544----766--44----43444577666036634778-73213455-6331002300-1028---99
Q ss_pred ECCCHHHHHHHHHHHHHC
Q ss_conf 628989999999999852
Q gi|254780206|r 380 LGKTITESRELAYHMVEN 397 (424)
Q Consensus 380 ~g~~l~eA~~~ay~~i~~ 397 (424)
T Consensus 372 igr~f~eal~ka~~~l~~ 389 (400)
T COG0458 372 IGRTFEEALQKALRSLEI 389 (400)
T ss_pred ECCHHHHHHHHHHHHHCC
T ss_conf 631299999999986114