HHsearch alignment for GI: 254780206 and conserved domain: PRK00683

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.95  E-value=0.49  Score=27.49  Aligned_cols=86  Identities=20%  Similarity=0.204  Sum_probs=49.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHH
Q ss_conf             58998865889999999985899678999549835751170551287898999999987189799997955787489989
Q gi|254780206|r    2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDA   81 (424)
Q Consensus         2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~   81 (424)
T Consensus         5 kvlV~GlG~SG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~~~~~~--~~~~~~--~~~d~vv~SPGi~~~~p~~~~   78 (418)
T PRK00683          5 RVVVLGLGVTGKSVARFLAQKGV--YVIGVDNSLEALQSCPYIHERYLE--GAEEFP--EQVDLVVRSPGIKPYHPWVEA   78 (418)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCC--EEEEECCCHHHHHHCCHHHHHCCC--CHHHCC--CCCCEEEECCCCCCCCHHHHH
T ss_conf             69998088879999999997829--899982981454546145554056--233242--349899989985998899999


Q ss_pred             HHHCCCCEEECC
Q ss_conf             860588067010
Q gi|254780206|r   82 LNAAGFKVFGPS   93 (424)
Q Consensus        82 l~~~gi~v~Gp~   93 (424)
T Consensus        79 a~~~~i~i~sei   90 (418)
T PRK00683         79 AVALKIPVVTDI   90 (418)
T ss_pred             HHHCCCCCCCHH
T ss_conf             998699754079