HHsearch alignment for GI: 254780206 and conserved domain: PRK01966
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed.
Probab=99.94 E-value=3e-26 Score=209.71 Aligned_cols=233 Identities=21% Similarity=0.261 Sum_probs=168.2
Q ss_pred HHHCCCEEEE---C--CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHH---H
Q ss_conf 8718979999---7--955787489989860588067010666555201023578887653101111223440111---1
Q gi|254780206|r 59 QEKHIDLVVV---G--PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKA---K 130 (424)
Q Consensus 59 ~~~~iDlviv---g--pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea---~ 130 (424)
T Consensus 87 ~~~~~D~vf~alHG~~GEDG~---iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~ 163 (344)
T PRK01966 87 LIIEVDVVFPVLHGPPGEDGT---IQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTRSRREEAIA 163 (344)
T ss_pred CCCCCCEEEEECCCCCCCCHH---HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHH
T ss_conf 035678999906899976709---99999975999368848999987669999999998799989839981666234589
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC----
Q ss_conf 1210124202563046534300023235677888788751445317778877520575234421577631035200----
Q gi|254780206|r 131 QYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTAR---- 206 (424)
Q Consensus 131 ~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~---- 206 (424)
T Consensus 164 ~~~~~l~~P~iVKP~~~GSSiGvs~v~~~~el~~ai~~a~~-~~~~vlvEefI~GrE~tv~vl~~~~~~~~l~~~Ei~~~ 242 (344)
T PRK01966 164 EVEEKLGLPVFVKPANLGSSVGISKVKNEEELEAALDLAFE-YDRKVLVEQGIKGREIECAVLGYNDEPVASVPGEIVKD 242 (344)
T ss_pred HHHHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHH-CCCCCEEECCCCCEEEEEEEECCCCCEEEECCEEECCC
T ss_conf 99986189879932899634325996899999999999986-39750575124448999999748994677311587179
Q ss_pred ----CCCCCCCCCCCCCCCCCCE-EECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEE
Q ss_conf ----0111356654444434430-000123443222010000089999986204623566445448985570-4899988
Q gi|254780206|r 207 ----DHKRIHDGDIGPNTGGMGA-CSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYN 280 (424)
Q Consensus 207 ----dyKr~~~~d~GpnTGGMGa-~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N 280 (424)
T Consensus 243 ~~fydy~~KY~------~~~~~~~~~Pa~-l~~~~~~~----i~~~a~~~~~~lg~--rg~~RiDf~~d~~g~~y~lEvN 309 (344)
T PRK01966 243 NDFYDYEAKYI------DDSGATLVIPAD-LSEELTEQ----IRELAIKAFKALGC--SGLARVDFFLTEDGEIYLNEIN 309 (344)
T ss_pred CCCCCHHHCCC------CCCCCEEECCCC-CCHHHHHH----HHHHHHHHHHHHCC--CCEEEEEEEEECCCCEEEEEEE
T ss_conf 87514888104------689716966788-99999999----99999999998199--7279898999089988999820
Q ss_pred EEECCCCCEEEEECC----CCCCHHHHHHHHHC
Q ss_conf 651477510443326----54411566654201
Q gi|254780206|r 281 VRFGDPECQAMMMRL----ESDILEILNSCVHG 309 (424)
Q Consensus 281 ~R~GDPE~q~ilp~L----~~dl~~il~~~~~g 309 (424)
T Consensus 310 t~PGm-T~~Sl~p~~a~~~G~s~~~li~~ii~~ 341 (344)
T PRK01966 310 TLPGF-TPISMYPKLWEASGLSYPELIDRLIEL 341 (344)
T ss_pred CCCCC-CCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 89998-754789999998099999999999999