HHsearch alignment for GI: 254780206 and conserved domain: PRK02472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.12 E-value=1.1 Score=25.03 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=51.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCH-----HHHHC-CEEEECCC-CCHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 5899886588999999998589967899954983-----57511-70551287-89899999998718979999795578
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNP-----GIAQH-AQCVAIDI-QNHSAIIHFCQEKHIDLVVVGPELPL 74 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~-----g~~~~-~~~~~i~~-~d~~~i~~~a~~~~iDlvivgpE~pL 74 (424)
T Consensus 11 ~i~viGlG~sG~s~a~~L~~~G~--~V~~~D~~~~~~~~~~~~l~~~gi~~~~g~~~~~~----~~~~~d~vV~SPgI~~ 84 (450)
T PRK02472 11 KVLVLGLAKSGYAAAKLLHKLGA--NVTVNDGKPFSENPAAQELLEEGIKVICGSHPLEL----LDENFDLMVKNPGIPY 84 (450)
T ss_pred EEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCCCCCHHHHHHHHCCCEEEECCCHHHH----CCCCCCEEEECCCCCC
T ss_conf 89999778999999999998869--89998488665798999999679989978880786----0578879998998799
Q ss_pred HHHHHHHHHHCCCCEEECCHHH
Q ss_conf 7489989860588067010666
Q gi|254780206|r 75 VNGISDALNAAGFKVFGPSQRA 96 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~Gp~~~a 96 (424)
T Consensus 85 ~~p~~~~a~~~~i~v~~~~el~ 106 (450)
T PRK02472 85 DNPMVEEALEKGIPIITEVELA 106 (450)
T ss_pred CCHHHHHHHHCCCCEEEHHHHH
T ss_conf 9999999998699674387888