HHsearch alignment for GI: 254780206 and conserved domain: PRK02472

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.12  E-value=1.1  Score=25.03  Aligned_cols=89  Identities=17%  Similarity=0.249  Sum_probs=51.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCH-----HHHHC-CEEEECCC-CCHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf             5899886588999999998589967899954983-----57511-70551287-89899999998718979999795578
Q gi|254780206|r    2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNP-----GIAQH-AQCVAIDI-QNHSAIIHFCQEKHIDLVVVGPELPL   74 (424)
Q Consensus         2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~-----g~~~~-~~~~~i~~-~d~~~i~~~a~~~~iDlvivgpE~pL   74 (424)
T Consensus        11 ~i~viGlG~sG~s~a~~L~~~G~--~V~~~D~~~~~~~~~~~~l~~~gi~~~~g~~~~~~----~~~~~d~vV~SPgI~~   84 (450)
T PRK02472         11 KVLVLGLAKSGYAAAKLLHKLGA--NVTVNDGKPFSENPAAQELLEEGIKVICGSHPLEL----LDENFDLMVKNPGIPY   84 (450)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCCCCCHHHHHHHHCCCEEEECCCHHHH----CCCCCCEEEECCCCCC
T ss_conf             89999778999999999998869--89998488665798999999679989978880786----0578879998998799


Q ss_pred             HHHHHHHHHHCCCCEEECCHHH
Q ss_conf             7489989860588067010666
Q gi|254780206|r   75 VNGISDALNAAGFKVFGPSQRA   96 (424)
Q Consensus        75 ~~gi~d~l~~~gi~v~Gp~~~a   96 (424)
T Consensus        85 ~~p~~~~a~~~~i~v~~~~el~  106 (450)
T PRK02472         85 DNPMVEEALEKGIPIITEVELA  106 (450)
T ss_pred             CCHHHHHHHHCCCCEEEHHHHH
T ss_conf             9999999998699674387888