HHsearch alignment for GI: 254780206 and conserved domain: PRK03369
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.54 E-value=0.4 Score=28.15 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=51.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHC-C-EEE-ECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 589988658899999999858996789995498357511-7-055-1287898999999987189799997955787489
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQH-A-QCV-AIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~-~-~~~-~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi 78 (424)
T Consensus 14 ~V~V~GlG~sG~a~a~~L~~~G~--~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~d~vV~SPGI~~~~p~ 86 (487)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGA--RPTVCDDDPDALRPHAERGVATVSSSDAVQ--QI---ADYALVVTSPGFPPTAPV 86 (487)
T ss_pred EEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCHHHHHHHHCCCCEECCCCCHH--HH---CCCCEEEECCCCCCCCHH
T ss_conf 89999156838999999997869--799998982577999865994863762265--64---677889989957998999
Q ss_pred HHHHHHCCCCEEECCHHHHHH
Q ss_conf 989860588067010666555
Q gi|254780206|r 79 SDALNAAGFKVFGPSQRAAKL 99 (424)
Q Consensus 79 ~d~l~~~gi~v~Gp~~~aa~l 99 (424)
T Consensus 87 l~~a~~~gi~i~~eieL~~~~ 107 (487)
T PRK03369 87 LAAAAAAGVPIWGDVELAWRL 107 (487)
T ss_pred HHHHHHCCCCEEEHHHHHHHH
T ss_conf 999998899076599999998