HHsearch alignment for GI: 254780206 and conserved domain: PRK03369

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.54  E-value=0.4  Score=28.15  Aligned_cols=91  Identities=22%  Similarity=0.289  Sum_probs=51.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHC-C-EEE-ECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf             589988658899999999858996789995498357511-7-055-1287898999999987189799997955787489
Q gi|254780206|r    2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQH-A-QCV-AIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI   78 (424)
Q Consensus         2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~-~-~~~-~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi   78 (424)
T Consensus        14 ~V~V~GlG~sG~a~a~~L~~~G~--~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~d~vV~SPGI~~~~p~   86 (487)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGA--RPTVCDDDPDALRPHAERGVATVSSSDAVQ--QI---ADYALVVTSPGFPPTAPV   86 (487)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCHHHHHHHHCCCCEECCCCCHH--HH---CCCCEEEECCCCCCCCHH
T ss_conf             89999156838999999997869--799998982577999865994863762265--64---677889989957998999


Q ss_pred             HHHHHHCCCCEEECCHHHHHH
Q ss_conf             989860588067010666555
Q gi|254780206|r   79 SDALNAAGFKVFGPSQRAAKL   99 (424)
Q Consensus        79 ~d~l~~~gi~v~Gp~~~aa~l   99 (424)
T Consensus        87 l~~a~~~gi~i~~eieL~~~~  107 (487)
T PRK03369         87 LAAAAAAGVPIWGDVELAWRL  107 (487)
T ss_pred             HHHHHHCCCCEEEHHHHHHHH
T ss_conf             999998899076599999998