HHsearch alignment for GI: 254780206 and conserved domain: PRK04663

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.52  E-value=0.59  Score=26.90  Aligned_cols=94  Identities=20%  Similarity=0.231  Sum_probs=50.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCC--H-HHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf             9589988658899999999858996789995498--3-575117055128789899999998718979999795578748
Q gi|254780206|r    1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGN--P-GIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNG   77 (424)
Q Consensus         1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN--~-g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~g   77 (424)
T Consensus         8 KkvlV~GlG~sG~s~a~~L~~~~~~~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~--~~~l--~~~d~vV~SPGI~~~~p   83 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKTQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWN--QDWL--AEADLVVTNPGIALATP   83 (438)
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCC--HHHH--CCCCEEEECCCCCCCCH
T ss_conf             7499990678589999999966998469996398893688762069769727889--6783--68999998997699898


Q ss_pred             HHHHHHHCCCCEEECCHHHHH
Q ss_conf             998986058806701066655
Q gi|254780206|r   78 ISDALNAAGFKVFGPSQRAAK   98 (424)
Q Consensus        78 i~d~l~~~gi~v~Gp~~~aa~   98 (424)
T Consensus        84 ~~~~a~~~~i~i~~eiel~~~  104 (438)
T PRK04663         84 EIQPVLAKGIPVVGDIELFAW  104 (438)
T ss_pred             HHHHHHHCCCCEECHHHHHHH
T ss_conf             999999869937038899976