HHsearch alignment for GI: 254780206 and conserved domain: PRK04663
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.52 E-value=0.59 Score=26.90 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=50.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCC--H-HHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf 9589988658899999999858996789995498--3-575117055128789899999998718979999795578748
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGN--P-GIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNG 77 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN--~-g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~g 77 (424)
T Consensus 8 KkvlV~GlG~sG~s~a~~L~~~~~~~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~--~~~l--~~~d~vV~SPGI~~~~p 83 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKTQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWN--QDWL--AEADLVVTNPGIALATP 83 (438)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCC--HHHH--CCCCEEEECCCCCCCCH
T ss_conf 7499990678589999999966998469996398893688762069769727889--6783--68999998997699898
Q ss_pred HHHHHHHCCCCEEECCHHHHH
Q ss_conf 998986058806701066655
Q gi|254780206|r 78 ISDALNAAGFKVFGPSQRAAK 98 (424)
Q Consensus 78 i~d~l~~~gi~v~Gp~~~aa~ 98 (424)
T Consensus 84 ~~~~a~~~~i~i~~eiel~~~ 104 (438)
T PRK04663 84 EIQPVLAKGIPVVGDIELFAW 104 (438)
T ss_pred HHHHHHHCCCCEECHHHHHHH
T ss_conf 999999869937038899976