HHsearch alignment for GI: 254780206 and conserved domain: PRK12815
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed.
Probab=99.96 E-value=6.7e-28 Score=221.62 Aligned_cols=363 Identities=16% Similarity=0.225 Sum_probs=247.9
Q ss_pred EEEEECCC------HHH------HHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 58998865------889------99999998589967899954983575----117055128789899999998718979
Q gi|254780206|r 2 RVLLIGSG------GRE------HALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsG------grE------hAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
T Consensus 9 kvLiiGsGpi~IGqa~EfDysg~qA-~~aLkeeG~--~vvlvN~NPaTi~TD~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~ 85 (1068)
T PRK12815 9 KILVIGSGPIIIGQAAEFDYSGTQA-CKALKEEGY--QVVLVNPNPATIMTDPEPADTVYFEPLTLEFVKRIIRREKPDA 85 (1068)
T ss_pred EEEEECCCCCHHCCHHHHHHHHHHH-HHHHHHCCC--EEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCE
T ss_conf 8999898815312344656569999-999998699--8999889832620898744437885898999999999749998
Q ss_pred EEE--CCCHHHHH--HHH--HHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 999--79557874--899--898605880670106665552010235788876531011112234401111121012420
Q gi|254780206|r 66 VVV--GPELPLVN--GIS--DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP 139 (424)
Q Consensus 66 viv--gpE~pL~~--gi~--d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P 139 (424)
T Consensus 86 il~~~GGqtaLnla~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s~~ea~~~a~~ig~P 165 (1068)
T PRK12815 86 LLATLGGQTALNLAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVDSEEEALRFAEKIGFP 165 (1068)
T ss_pred EEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHCCCC
T ss_conf 98677784799999999975977865964967999999864599999999997699999705219999999999866998
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHCC-CCCEEEECCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 2563046534300023235677888788751445-3177788775205-752344215776-310352000111356654
Q gi|254780206|r 140 IVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-NSTVIIEEYLEGF-EVSFFALCDGKT-AIPFTTARDHKRIHDGDI 216 (424)
Q Consensus 140 vVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-~~~VliEefl~G~-E~Sv~~i~dG~~-~~~l~~~~dyKr~~~~d~ 216 (424)
T Consensus 166 vivRps~~lGg~g~~i~~n~~eL~~~~~~~~~~S~~~~vlie~sl~gwkEie~ev~RD~~~n~i~vc~mEnid-----P~ 240 (1068)
T PRK12815 166 IIVRPAYTLGGDGGGIAENEEELEQLARQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNDNCVTVCNMENID-----PV 240 (1068)
T ss_pred EEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEEEEECCCCEEEEEECCCCC-----CC
T ss_conf 9998361066896504459999999999999639998578650117976999999998898979985412354-----45
Q ss_pred CCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECC--EEEEEEEEEEECCCCCEEEEEC
Q ss_conf 44443443000012344322201000008999998620462356644544898557--0489998865147751044332
Q gi|254780206|r 217 GPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQ--GPYLIEYNVRFGDPECQAMMMR 294 (424)
Q Consensus 217 GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~--gp~viE~N~R~GDPE~q~ilp~ 294 (424)
T Consensus 241 GIHTGDSi~vaP~qTL~d~e~q~lR~-~---a~~I~~~lgv--~G~~NiQFAv~p~~~~~~VIEvNPR~SRs--salaSK 312 (1068)
T PRK12815 241 GVHTGDSIVVAPSQTLTDDEYQMLRS-A---SLKIIRALGV--VGGCNIQFALDPRSKQYYVIEVNPRVSRS--SALASK 312 (1068)
T ss_pred CCCCCCCCEECCCCCCCHHHHHHHHH-H---HHHHHHHCCE--ECCEEEEEEECCCCCCEEEEECCCCCCCH--HHHHHH
T ss_conf 43567745345781269999999999-9---9999997280--10105799886999828999647862202--478887
Q ss_pred CCC-CCHHHHHHHHHCC-CCCCCCCCCCCCEEEEEECCCCCCC-CCCC-CCCCCCCCCCCCCCEEEEEEEEEECCEEEEC
Q ss_conf 654-4115666542013-3332123444420675422544668-7757-9762487666898689983358778879981
Q gi|254780206|r 295 LES-DILEILNSCVHGN-LHNTHINWKAEYALTVVVATKGYPE-EYPH-GTIISKIPQNTGTTQLFHAGTAIVNNNLTAN 370 (424)
Q Consensus 295 L~~-dl~~il~~~~~g~-L~~~~~~~~~~~~v~Vvlas~GYP~-~~~k-g~~I~~l~~~~~~~~ifhagt~~~~g~l~t~ 370 (424)
T Consensus 313 ATGyPiAkvaaklalG~~L~ei~n~iTg~t-----~A~f-EP~lDyvvvK~P~~~F~kf~~~d~--~L-----gt~Mks- 378 (1068)
T PRK12815 313 ATGYPIAKIAAKLAVGYTLDEIKNPLTGLT-----YASF-EPTLDYVVVKFPRWPFDKFGYADR--TL-----GTQMKA- 378 (1068)
T ss_pred HCCCCHHHHHHHHHCCCCHHHCCCCCCCCC-----CCCC-CCCCCEEEEEEECCCCCCCCCCCC--CC-----CCCCCC-
T ss_conf 508848999999863887777066413773-----0333-775776999740566444678875--44-----751233-
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 880799999628989999999999852
Q gi|254780206|r 371 GGRVLSATALGKTITESRELAYHMVEN 397 (424)
Q Consensus 371 GGRVL~vv~~g~~l~eA~~~ay~~i~~ 397 (424)
T Consensus 379 ---~Gevm~igr~f~eA~~KAlrsle~ 402 (1068)
T PRK12815 379 ---TGEVMAIGRNFESAFQKALRSLEI 402 (1068)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ---322200300289999999986335