HHsearch alignment for GI: 254780206 and conserved domain: TIGR01235
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=99.93 E-value=4.6e-24 Score=193.89 Aligned_cols=333 Identities=17% Similarity=0.298 Sum_probs=239.3
Q ss_pred EEEEC-CCCCHHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 05512-87898999999987189799997----95578748998986058806701066655520102357888765310
Q gi|254780206|r 42 QCVAI-DIQNHSAIIHFCQEKHIDLVVVG----PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 42 ~~~~i-~~~d~~~i~~~a~~~~iDlvivg----pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP 116 (424)
T Consensus 57 d~~Pv~AYL~I~eiI~vAk~~~vDaiHPGYGfLSE~~---~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvP 133 (1169)
T TIGR01235 57 DLKPVEAYLSIDEIIRVAKKNKVDAIHPGYGFLSENS---EFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVP 133 (1169)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCH---HHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 2687213047156989960078977708856224887---8999998689567379747775405768999888877887
Q ss_pred CCCC--CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CC
Q ss_conf 1111--22344011111210124202563046534300023235677888788751445-----3177788775205-75
Q gi|254780206|r 117 TATY--QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EV 188 (424)
Q Consensus 117 t~~~--~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~ 188 (424)
T Consensus 134 vvPgt~Gp~~t~eev~~f~~~~GYPvi~KAs~GGGGRGMRvvR~~~dv~~~~~rA~sEA~AAFGnd~~yvEklie~pkHi 213 (1169)
T TIGR01235 134 VVPGTDGPVETLEEVLDFAKAIGYPVIIKASYGGGGRGMRVVRSEEDVADAFQRAKSEAKAAFGNDEVYVEKLIERPKHI 213 (1169)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEE
T ss_conf 63688687525999999997569958987216889720168607567999988876887310489806985102488207
Q ss_pred CEEEECCC-CCCCCCC----CCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEE
Q ss_conf 23442157-7631035----200-01113566544444344300001234432220100000899999862046235664
Q gi|254780206|r 189 SFFALCDG-KTAIPFT----TAR-DHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGV 262 (424)
Q Consensus 189 Sv~~i~dG-~~~~~l~----~~~-dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~ 262 (424)
T Consensus 214 EvQ~LGD~~GNVVHLFERDCSVQRRhQKVvE------------~APA~~Ls~e~Rd~~~~~----Avk-LAk-~~nY~nA 275 (1169)
T TIGR01235 214 EVQLLGDKHGNVVHLFERDCSVQRRHQKVVE------------VAPAPSLSREVRDEIAEY----AVK-LAK-EVNYINA 275 (1169)
T ss_pred EEEEEECCCCCEEEEEECCCCCEEECCEEEE------------ECCCCCCCHHHHHHHHHH----HHH-HHH-HCCCCCC
T ss_conf 8987634889878887507762000550788------------678877888899999999----999-987-4289888
Q ss_pred EEEEEEEECCE--EEEEEEEEEECCCCCEEEEECCCC-CCHHHHHHHHHCC-CCCCCCCCCCCCEEEEEECCCCCCC--C
Q ss_conf 45448985570--489998865147751044332654-4115666542013-3332123444420675422544668--7
Q gi|254780206|r 263 LFAGLMITEQG--PYLIEYNVRFGDPECQAMMMRLES-DILEILNSCVHGN-LHNTHINWKAEYALTVVVATKGYPE--E 336 (424)
Q Consensus 263 l~~~~m~t~~g--p~viE~N~R~GDPE~q~ilp~L~~-dl~~il~~~~~g~-L~~~~~~~~~~~~v~Vvlas~GYP~--~ 336 (424)
T Consensus 276 GTvEFL~d~~~G~FYFIEvNpRiQ-VE-HTvTE~iTGiDiV~aQI~va~G~sL~~~~~g~~~Q~~----I~t~GyAiQcR 349 (1169)
T TIGR01235 276 GTVEFLVDNDTGKFYFIEVNPRIQ-VE-HTVTEEITGIDIVQAQIRVAEGASLPSKQLGVPEQED----IKTRGYAIQCR 349 (1169)
T ss_pred CCEEEEEECCCCCEEEEEECCCEE-EE-EEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCC----EEEEEEEEEEC
T ss_conf 724885554889377899888000-11-5586467340377789999655746877577886544----03501488722
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEE----EEEECCEEEECC--------CCEEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 75797624876668986899833----587788799818--------8079999962898999999999985258999
Q gi|254780206|r 337 YPHGTIISKIPQNTGTTQLFHAG----TAIVNNNLTANG--------GRVLSATALGKTITESRELAYHMVENIDWKH 402 (424)
Q Consensus 337 ~~kg~~I~~l~~~~~~~~ifhag----t~~~~g~l~t~G--------GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g 402 (424)
T Consensus 350 vTTEDP~~dF~PdtGri~~YRSa~G~GvRLD~G~sY~-GAiItpYYDsLLVK~~~~A~~~~~a~~kM~RaL~EFRIRG 426 (1169)
T TIGR01235 350 VTTEDPANDFQPDTGRIEVYRSAGGFGVRLDGGNSYA-GAIITPYYDSLLVKVSAWASTFEEAAAKMVRALREFRIRG 426 (1169)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCC-CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 5445864266889672789981784317616766414-6301675233101001037898999999754201110022