Query gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 424
No_of_seqs 238 out of 3227
Neff 6.7
Searched_HMMs 39220
Date Mon May 23 14:36:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780206.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00877 purD phosphoribosyla 100.0 0 0 1120.7 27.0 415 1-415 1-459 (459)
2 PRK00885 phosphoribosylamine-- 100.0 0 0 1070.8 33.0 417 1-417 1-422 (424)
3 PRK13789 phosphoribosylamine-- 100.0 0 0 1059.1 30.8 414 1-414 5-426 (426)
4 PRK13790 phosphoribosylamine-- 100.0 0 0 1041.6 32.4 412 1-417 1-415 (415)
5 PRK05784 phosphoribosylamine-- 100.0 0 0 1025.8 29.6 420 1-422 1-454 (485)
6 COG0151 PurD Phosphoribosylami 100.0 0 0 1023.4 28.9 417 1-417 1-426 (428)
7 PRK06395 phosphoribosylamine-- 100.0 0 0 977.5 31.3 418 1-422 3-431 (435)
8 KOG0237 consensus 100.0 0 0 964.2 26.2 416 1-416 3-429 (788)
9 pfam01071 GARS_A Phosphoribosy 100.0 0 0 372.0 8.5 188 101-288 1-193 (193)
10 PRK09288 purT phosphoribosylgl 100.0 5.5E-36 1.4E-40 280.0 23.3 367 2-403 14-395 (395)
11 TIGR01369 CPSaseII_lrg carbamo 100.0 1.7E-37 4.4E-42 291.0 11.4 288 2-311 575-889 (1089)
12 PRK12767 carbamoyl phosphate s 100.0 5.6E-35 1.4E-39 272.8 20.6 297 1-325 2-310 (325)
13 PRK02186 argininosuccinate lya 100.0 1.5E-33 3.8E-38 262.5 19.0 372 15-414 18-402 (892)
14 PRK12815 carB carbamoyl phosph 100.0 2.9E-32 7.4E-37 253.2 19.0 284 2-310 556-864 (1068)
15 PRK05294 carB carbamoyl phosph 100.0 1.4E-31 3.5E-36 248.2 21.8 286 2-310 555-866 (1063)
16 PRK05294 carB carbamoyl phosph 100.0 3.4E-29 8.6E-34 231.0 21.7 381 2-415 9-420 (1063)
17 PRK07206 hypothetical protein; 100.0 8.9E-30 2.3E-34 235.2 17.4 373 10-404 14-412 (415)
18 pfam02844 GARS_N Phosphoribosy 100.0 1.9E-30 4.8E-35 240.1 11.6 99 2-100 1-99 (99)
19 COG0027 PurT Formate-dependent 100.0 5.7E-28 1.5E-32 222.1 22.1 360 2-401 14-393 (394)
20 COG0439 AccC Biotin carboxylas 100.0 3.1E-27 7.8E-32 216.8 25.2 388 1-412 3-422 (449)
21 PRK08462 biotin carboxylase; V 100.0 1.8E-27 4.6E-32 218.5 23.3 379 2-412 6-423 (446)
22 TIGR01369 CPSaseII_lrg carbamo 100.0 3.7E-29 9.5E-34 230.7 13.0 360 2-397 8-402 (1089)
23 PRK12815 carB carbamoyl phosph 100.0 6.7E-28 1.7E-32 221.6 18.6 363 2-397 9-402 (1068)
24 PRK08654 pyruvate carboxylase 100.0 1.1E-26 2.8E-31 212.8 24.4 371 2-411 4-420 (497)
25 PRK05586 biotin carboxylase; V 100.0 2.9E-26 7.3E-31 209.9 22.9 379 2-411 4-421 (447)
26 PRK01372 ddl D-alanine--D-alan 100.0 9.6E-28 2.5E-32 220.5 15.0 275 1-310 5-300 (304)
27 PRK06111 acetyl-CoA carboxylas 100.0 2.1E-25 5.4E-30 203.5 23.4 380 2-411 4-420 (449)
28 PRK06019 phosphoribosylaminoim 99.9 1E-25 2.6E-30 205.9 20.9 359 1-401 8-374 (377)
29 PRK12833 acetyl-CoA carboxylas 99.9 1.8E-25 4.7E-30 204.0 21.4 378 2-412 7-425 (458)
30 PRK08591 acetyl-CoA carboxylas 99.9 2E-25 5.1E-30 203.7 21.6 378 2-411 4-419 (449)
31 PRK07178 acetyl-CoA carboxylas 99.9 2.5E-25 6.4E-30 203.0 20.3 380 2-411 4-419 (471)
32 TIGR01205 D_ala_D_alaTIGR D-al 99.9 1.9E-26 4.7E-31 211.2 12.8 232 61-307 105-371 (375)
33 PRK01966 ddl D-alanyl-alanine 99.9 3E-26 7.6E-31 209.7 13.6 233 59-309 87-341 (344)
34 PRK08463 acetyl-CoA carboxylas 99.9 2.4E-24 6E-29 196.0 22.6 380 2-411 4-421 (478)
35 COG0458 CarB Carbamoylphosphat 99.9 1.5E-24 3.7E-29 197.5 20.7 363 1-397 6-389 (400)
36 PRK12999 pyruvate carboxylase; 99.9 1.5E-23 3.9E-28 190.2 23.0 374 2-411 7-432 (1147)
37 TIGR00514 accC acetyl-CoA carb 99.9 3.3E-24 8.5E-29 194.9 16.1 331 46-414 58-426 (451)
38 TIGR01235 pyruv_carbox pyruvat 99.9 4.6E-24 1.2E-28 193.9 16.6 333 42-402 57-426 (1169)
39 pfam02843 GARS_C Phosphoribosy 99.9 4.1E-25 1E-29 201.5 8.6 92 322-414 1-92 (92)
40 TIGR02712 urea_carbox urea car 99.9 8.3E-22 2.1E-26 177.6 19.4 367 2-403 3-422 (1226)
41 pfam02786 CPSase_L_D2 Carbamoy 99.9 4.1E-24 1.1E-28 194.2 5.8 195 102-310 1-206 (211)
42 COG4770 Acetyl/propionyl-CoA c 99.9 6.3E-22 1.6E-26 178.5 13.7 365 2-403 4-415 (645)
43 KOG0238 consensus 99.9 1.2E-19 3.1E-24 161.9 20.2 327 47-403 55-412 (670)
44 COG1038 PycA Pyruvate carboxyl 99.9 7.8E-20 2E-24 163.3 18.3 331 45-402 62-427 (1149)
45 KOG0369 consensus 99.8 5.2E-19 1.3E-23 157.4 19.8 326 47-403 91-451 (1176)
46 COG0026 PurK Phosphoribosylami 99.8 2.2E-18 5.6E-23 152.9 20.4 360 1-401 2-371 (375)
47 pfam02655 ATP-grasp_3 ATP-gras 99.8 5.4E-21 1.4E-25 171.7 6.1 157 101-284 2-158 (160)
48 pfam07478 Dala_Dala_lig_C D-al 99.8 8.8E-21 2.2E-25 170.2 5.3 161 109-284 1-174 (201)
49 pfam08443 RimK RimK-like ATP-g 99.8 3.6E-20 9.1E-25 165.8 8.1 167 101-286 2-172 (190)
50 pfam02222 ATP-grasp ATP-grasp 99.8 7.7E-21 2E-25 170.6 4.6 158 110-285 1-162 (171)
51 TIGR01161 purK phosphoribosyla 99.8 9.8E-19 2.5E-23 155.4 14.7 351 2-389 1-385 (386)
52 COG1181 DdlA D-alanine-D-alani 99.8 3.1E-18 7.8E-23 151.8 12.2 225 60-295 59-297 (317)
53 PRK06849 hypothetical protein; 99.8 3.5E-17 8.9E-22 144.2 16.7 258 1-284 5-277 (387)
54 PRK10446 ribosomal protein S6 99.8 1E-17 2.6E-22 148.1 13.5 274 1-311 1-290 (300)
55 KOG0370 consensus 99.8 2.8E-17 7.2E-22 144.8 15.0 289 3-310 921-1231(1435)
56 KOG0368 consensus 99.7 3.8E-14 9.8E-19 122.2 18.4 338 47-411 122-527 (2196)
57 TIGR02068 cya_phycin_syn cyano 99.6 5E-16 1.3E-20 135.8 4.8 123 68-193 162-312 (876)
58 TIGR03103 trio_acet_GNAT GNAT- 99.6 6.6E-15 1.7E-19 127.7 7.8 196 73-284 242-523 (547)
59 COG0189 RimK Glutathione synth 99.6 8.9E-14 2.3E-18 119.6 11.9 229 59-308 75-312 (318)
60 KOG0370 consensus 99.6 8E-15 2E-19 127.1 6.3 366 2-398 379-771 (1435)
61 TIGR01142 purT phosphoribosylg 99.5 4.1E-13 1E-17 114.8 14.6 370 2-400 1-406 (407)
62 COG1821 Predicted ATP-utilizin 99.5 1.1E-12 2.8E-17 111.7 16.4 275 1-323 1-294 (307)
63 TIGR00768 rimK_fam alpha-L-glu 99.5 1.4E-13 3.6E-18 118.1 10.9 268 12-305 20-319 (321)
64 TIGR02144 LysX_arch Lysine bio 99.5 9.6E-14 2.5E-18 119.3 9.2 201 61-282 47-261 (289)
65 COG2232 Predicted ATP-dependen 99.5 3.3E-12 8.4E-17 108.2 15.4 336 2-400 13-374 (389)
66 PRK02471 bifunctional glutamat 99.4 3.9E-13 1E-17 114.9 7.9 98 98-197 485-586 (753)
67 COG3919 Predicted ATP-grasp en 99.1 3E-09 7.6E-14 86.9 12.1 284 3-310 6-313 (415)
68 TIGR01016 sucCoAbeta succinyl- 99.0 3.2E-10 8.1E-15 93.9 3.3 101 104-204 6-126 (389)
69 PRK13278 purP 5-formaminoimida 98.9 4E-08 1E-12 78.7 13.2 263 1-283 19-310 (356)
70 pfam08442 ATP-grasp_2 ATP-gras 98.9 1E-09 2.6E-14 90.2 3.2 95 105-199 6-118 (202)
71 COG0045 SucC Succinyl-CoA synt 98.8 1.4E-09 3.6E-14 89.2 1.4 101 104-204 6-124 (387)
72 PRK05246 glutathione synthetas 98.8 5.2E-08 1.3E-12 77.9 9.4 280 1-311 2-313 (316)
73 pfam02955 GSH-S_ATP Prokaryoti 98.8 2.6E-08 6.6E-13 80.1 6.8 146 117-283 12-163 (176)
74 PRK00696 sucC succinyl-CoA syn 98.7 4.6E-09 1.2E-13 85.5 2.8 99 104-202 6-122 (388)
75 PRK13277 5-formaminoimidazole- 98.6 2.3E-06 5.9E-11 66.0 14.0 263 1-286 15-320 (363)
76 COG1759 5-formaminoimidazole-4 98.5 5.9E-06 1.5E-10 63.0 12.9 255 1-285 19-318 (361)
77 TIGR02291 rimK_rel_E_lig alpha 98.5 5.1E-07 1.3E-11 70.7 6.8 180 101-284 36-271 (320)
78 PRK06524 biotin carboxylase-li 98.4 4.4E-06 1.1E-10 63.9 11.1 220 50-285 78-312 (480)
79 PRK12458 glutathione synthetas 98.3 4.4E-06 1.1E-10 63.9 7.9 229 62-313 85-333 (349)
80 pfam05770 Ins134_P3_kin Inosit 97.8 0.0002 5.2E-09 51.9 9.4 231 52-303 25-305 (307)
81 COG1748 LYS9 Saccharopine dehy 97.8 0.00048 1.2E-08 49.2 10.7 109 1-116 2-118 (389)
82 pfam00289 CPSase_L_chain Carba 97.4 0.0021 5.3E-08 44.6 9.2 90 2-96 3-108 (109)
83 pfam02571 CbiJ Precorrin-6x re 97.1 0.012 2.9E-07 39.2 10.3 119 1-138 1-128 (246)
84 TIGR01380 glut_syn glutathione 97.1 0.00039 9.9E-09 49.9 2.7 227 51-307 71-318 (322)
85 pfam01408 GFO_IDH_MocA Oxidore 96.9 0.0056 1.4E-07 41.5 7.8 111 1-117 1-116 (120)
86 COG2099 CobK Precorrin-6x redu 96.8 0.025 6.3E-07 36.9 10.3 120 1-137 3-128 (257)
87 KOG2799 consensus 96.8 0.00033 8.3E-09 50.4 0.5 102 105-206 29-155 (434)
88 COG1091 RfbD dTDP-4-dehydrorha 96.4 0.027 6.8E-07 36.6 8.3 135 1-152 1-155 (281)
89 PRK09987 dTDP-4-dehydrorhamnos 96.3 0.015 3.8E-07 38.4 6.4 59 1-68 1-60 (299)
90 CHL00194 ycf39 Ycf39; Provisio 96.2 0.13 3.3E-06 31.7 11.9 112 1-116 1-138 (319)
91 COG0673 MviM Predicted dehydro 96.2 0.063 1.6E-06 33.9 9.0 142 1-146 4-155 (342)
92 TIGR01214 rmlD dTDP-4-dehydror 96.0 0.015 3.7E-07 38.5 5.1 62 2-67 1-65 (317)
93 pfam03133 TTL Tubulin-tyrosine 95.9 0.0098 2.5E-07 39.8 3.8 41 138-184 67-107 (291)
94 PRK11579 putative oxidoreducta 95.7 0.16 4.2E-06 30.9 9.5 137 1-144 5-150 (346)
95 PRK08057 cobalt-precorrin-6x r 95.7 0.22 5.7E-06 29.9 10.7 120 1-137 2-125 (241)
96 pfam03435 Saccharop_dh Sacchar 95.5 0.25 6.3E-06 29.6 11.0 88 3-92 1-97 (384)
97 pfam02629 CoA_binding CoA bind 95.5 0.11 2.7E-06 32.3 7.8 85 2-90 5-90 (96)
98 KOG1447 consensus 95.4 0.016 4E-07 38.2 3.5 180 105-299 26-244 (412)
99 TIGR03023 WcaJ_sugtrans Undeca 95.2 0.31 8E-06 28.9 9.8 88 2-90 130-222 (451)
100 TIGR01435 glu_cys_lig_rel puta 95.1 0.037 9.4E-07 35.6 4.4 99 99-198 487-590 (754)
101 TIGR03025 EPS_sugtrans exopoly 94.9 0.37 9.4E-06 28.4 9.9 88 2-91 127-220 (445)
102 KOG3895 consensus 94.7 0.15 3.8E-06 31.2 6.8 221 57-313 150-396 (488)
103 PRK07578 short chain dehydroge 94.4 0.27 7E-06 29.3 7.5 58 1-67 1-60 (199)
104 COG2344 AT-rich DNA-binding pr 94.4 0.41 1.1E-05 28.0 8.4 42 47-88 131-172 (211)
105 COG1181 DdlA D-alanine-D-alani 94.2 0.054 1.4E-06 34.4 3.5 97 99-195 48-150 (317)
106 TIGR02482 PFKA_ATP 6-phosphofr 93.8 0.6 1.5E-05 26.8 8.2 146 52-206 81-253 (302)
107 pfam06849 DUF1246 Protein of u 93.7 0.62 1.6E-05 26.7 8.2 112 3-120 1-122 (124)
108 pfam11379 DUF3182 Protein of u 93.6 0.044 1.1E-06 35.0 2.1 94 101-198 102-201 (355)
109 PRK03369 murD UDP-N-acetylmura 93.5 0.4 1E-05 28.1 6.9 91 2-99 14-107 (487)
110 PRK04663 murD UDP-N-acetylmura 93.5 0.59 1.5E-05 26.9 7.8 94 1-98 8-104 (438)
111 PRK00141 murD UDP-N-acetylmura 93.5 0.4 1E-05 28.1 6.9 91 2-99 19-113 (476)
112 PRK10084 dTDP-glucose 4,6 dehy 93.4 0.72 1.8E-05 26.3 8.4 66 1-67 1-78 (352)
113 PRK01390 murD UDP-N-acetylmura 93.2 0.34 8.6E-06 28.7 6.1 84 2-91 11-98 (457)
114 PRK10675 UDP-galactose-4-epime 93.1 0.74 1.9E-05 26.2 7.7 65 1-67 1-78 (338)
115 PRK00421 murC UDP-N-acetylmura 93.0 0.83 2.1E-05 25.8 8.8 107 2-116 10-136 (459)
116 PRK00683 murD UDP-N-acetylmura 93.0 0.49 1.2E-05 27.5 6.7 86 2-93 5-90 (418)
117 cd03784 GT1_Gtf_like This fami 92.9 0.85 2.2E-05 25.8 8.8 24 1-24 1-29 (401)
118 PRK01641 leuD isopropylmalate 92.8 0.24 6E-06 29.8 4.9 21 124-144 81-101 (201)
119 PRK08300 acetaldehyde dehydrog 92.7 0.91 2.3E-05 25.5 8.6 90 1-90 5-98 (298)
120 PRK09009 C factor cell-cell si 92.6 0.93 2.4E-05 25.5 8.5 67 1-67 1-72 (235)
121 PRK07765 para-aminobenzoate sy 92.6 0.94 2.4E-05 25.4 8.0 76 1-93 1-83 (221)
122 PRK12778 putative bifunctional 92.5 0.97 2.5E-05 25.3 9.5 88 2-90 100-207 (760)
123 TIGR02477 PFKA_PPi diphosphate 92.3 0.67 1.7E-05 26.5 6.7 94 1-94 75-205 (566)
124 PRK04308 murD UDP-N-acetylmura 92.2 0.74 1.9E-05 26.2 6.8 91 2-98 7-103 (445)
125 PRK02472 murD UDP-N-acetylmura 92.1 1.1 2.7E-05 25.0 8.5 89 2-96 11-106 (450)
126 COG0771 MurD UDP-N-acetylmuram 92.0 0.64 1.6E-05 26.6 6.3 115 1-121 8-143 (448)
127 TIGR00715 precor6x_red precorr 91.5 1.2 3.1E-05 24.6 7.6 65 1-67 1-72 (260)
128 COG1087 GalE UDP-glucose 4-epi 91.4 1.3 3.2E-05 24.5 7.4 64 1-67 1-72 (329)
129 PRK05472 redox-sensing transcr 91.1 1.4 3.5E-05 24.3 8.9 44 46-89 130-173 (211)
130 PRK04690 murD UDP-N-acetylmura 91.0 0.5 1.3E-05 27.4 4.9 83 2-93 10-100 (468)
131 PRK03806 murD UDP-N-acetylmura 91.0 1.3 3.4E-05 24.4 7.0 85 2-92 8-95 (438)
132 PRK10206 putative dehydrogenas 91.0 1.4 3.5E-05 24.2 8.2 135 2-142 4-149 (345)
133 PRK12775 putative trifunctiona 90.8 1.4 3.6E-05 24.1 10.1 86 2-90 101-208 (993)
134 pfam08886 GshA Glutamate-cyste 90.8 0.58 1.5E-05 27.0 5.0 101 62-165 152-288 (404)
135 TIGR01361 DAHP_synth_Bsub phos 90.5 0.74 1.9E-05 26.2 5.4 78 120-207 116-201 (262)
136 cd01492 Aos1_SUMO Ubiquitin ac 90.5 1.5 3.9E-05 23.9 9.5 112 1-118 22-139 (197)
137 cd01065 NAD_bind_Shikimate_DH 89.9 0.67 1.7E-05 26.5 4.7 34 2-36 21-54 (155)
138 pfam01902 ATP_bind_4 ATP-bindi 89.7 1.8 4.5E-05 23.5 11.6 134 1-145 1-142 (219)
139 pfam00899 ThiF ThiF family. Th 89.7 1.8 4.5E-05 23.5 8.1 109 2-116 3-118 (134)
140 PRK10124 putative UDP-glucose 89.6 1.8 4.6E-05 23.4 9.8 84 2-90 146-235 (464)
141 PRK05562 precorrin-2 dehydroge 89.6 1.3 3.3E-05 24.5 6.0 48 1-65 25-72 (222)
142 TIGR03013 EpsB_2 sugar transfe 89.5 1.8 4.6E-05 23.4 8.1 64 2-69 126-193 (442)
143 PRK02006 murD UDP-N-acetylmura 89.3 0.79 2E-05 26.0 4.8 83 2-92 9-103 (501)
144 pfam01118 Semialdhyde_dh Semia 89.3 1.2 3E-05 24.7 5.6 82 2-91 1-95 (121)
145 PRK08507 prephenate dehydrogen 89.3 1.9 4.8E-05 23.3 7.7 64 1-70 1-66 (275)
146 PRK01710 murD UDP-N-acetylmura 88.8 2 5.1E-05 23.0 8.3 91 2-98 16-113 (458)
147 PRK00025 lpxB lipid-A-disaccha 88.7 2.1 5.2E-05 23.0 13.4 113 1-117 2-158 (382)
148 cd01483 E1_enzyme_family Super 88.6 2.1 5.3E-05 23.0 8.3 113 2-120 1-120 (143)
149 TIGR00417 speE spermidine synt 88.4 0.47 1.2E-05 27.6 3.1 65 2-73 78-165 (284)
150 cd07894 Adenylation_RNA_ligase 88.0 0.29 7.4E-06 29.1 1.8 114 56-171 94-221 (340)
151 PRK10217 dTDP-glucose 4,6-dehy 88.0 2.3 5.7E-05 22.7 7.6 66 1-67 2-79 (355)
152 PRK07417 arogenate dehydrogena 88.0 2.3 5.7E-05 22.7 8.4 62 1-70 2-66 (280)
153 PRK00005 fmt methionyl-tRNA fo 87.7 2.4 6E-05 22.6 6.8 59 1-66 1-60 (309)
154 PRK08340 glucose-1-dehydrogena 87.5 2.4 6.1E-05 22.5 9.0 65 1-67 1-81 (259)
155 pfam05368 NmrA NmrA-like famil 87.4 2.4 6.2E-05 22.5 9.8 86 3-92 1-100 (232)
156 PRK01438 murD UDP-N-acetylmura 87.4 2.4 6.2E-05 22.4 9.4 89 1-96 15-111 (481)
157 PRK05752 uroporphyrinogen-III 87.1 2.5 6.4E-05 22.3 9.4 30 1-32 4-33 (255)
158 pfam02750 Synapsin_C Synapsin, 87.1 1.8 4.6E-05 23.4 5.4 145 112-282 28-177 (203)
159 COG2102 Predicted ATPases of P 87.0 2.6 6.5E-05 22.3 11.6 135 1-145 1-144 (223)
160 TIGR00289 TIGR00289 conserved 86.5 2.2 5.6E-05 22.8 5.6 134 1-145 1-146 (227)
161 pfam00551 Formyl_trans_N Formy 86.4 2.7 7E-05 22.1 9.2 68 1-68 1-85 (181)
162 PRK05693 short chain dehydroge 86.3 2.8 7.1E-05 22.0 9.7 65 1-67 1-77 (274)
163 PRK00994 F420-dependent methyl 86.3 1.7 4.5E-05 23.5 5.0 80 47-154 44-126 (276)
164 TIGR02194 GlrX_NrdH Glutaredox 85.9 0.48 1.2E-05 27.5 1.9 37 105-144 14-55 (72)
165 PRK07502 cyclohexadienyl dehyd 85.8 2.9 7.5E-05 21.9 8.0 66 2-70 8-74 (307)
166 PRK00258 aroE shikimate 5-dehy 85.2 1.8 4.7E-05 23.3 4.7 21 46-66 42-62 (275)
167 PRK00094 gpsA NAD(P)H-dependen 84.9 3.2 8.2E-05 21.6 10.5 31 1-31 2-32 (325)
168 TIGR03215 ac_ald_DH_ac acetald 84.9 3.2 8.2E-05 21.6 9.3 88 1-91 2-93 (285)
169 PRK06732 phosphopantothenate-- 84.9 2 5.2E-05 23.0 4.8 73 1-81 1-94 (228)
170 cd01423 MGS_CPS_I_III Methylgl 84.7 1.9 4.9E-05 23.2 4.6 62 2-68 2-77 (116)
171 KOG1209 consensus 84.7 3.3 8.4E-05 21.5 6.7 58 2-61 9-74 (289)
172 TIGR02151 IPP_isom_2 isopenten 84.6 2.3 5.8E-05 22.7 4.9 139 42-207 95-265 (349)
173 PRK00758 GMP synthase subunit 84.2 3.4 8.8E-05 21.4 8.3 71 2-93 1-74 (184)
174 COG0169 AroE Shikimate 5-dehyd 83.9 3.2 8.2E-05 21.6 5.4 13 86-98 62-74 (283)
175 COG2403 Predicted GTPase [Gene 83.8 3.5 9E-05 21.3 7.3 94 1-96 7-121 (449)
176 KOG2158 consensus 83.8 1 2.6E-05 25.1 2.9 53 110-162 199-251 (565)
177 pfam03652 UPF0081 Uncharacteri 83.8 1.6 4.1E-05 23.7 3.9 72 49-137 38-109 (134)
178 PRK05690 molybdopterin biosynt 83.8 3.6 9.1E-05 21.2 7.5 65 2-67 34-104 (245)
179 COG0066 LeuD 3-isopropylmalate 83.7 1.6 4E-05 23.8 3.8 26 120-145 72-97 (191)
180 pfam02593 DUF166 Uncharacteriz 83.3 3.7 9.5E-05 21.1 5.8 35 107-141 93-132 (215)
181 TIGR01087 murD UDP-N-acetylmur 83.2 3.7 9.5E-05 21.1 7.1 119 2-125 1-147 (476)
182 PRK01368 murD UDP-N-acetylmura 83.2 3.8 9.6E-05 21.1 6.8 82 2-93 8-94 (450)
183 TIGR03466 HpnA hopanoid-associ 83.2 3.8 9.6E-05 21.1 7.9 63 1-67 1-69 (328)
184 cd01545 PBP1_SalR Ligand-bindi 83.1 2.5 6.3E-05 22.4 4.6 14 54-67 48-61 (270)
185 pfam01993 MTD methylene-5,6,7, 82.9 3.8 9.7E-05 21.0 5.5 79 49-154 45-126 (276)
186 TIGR02483 PFK_mixed phosphofru 82.8 3.8 9.8E-05 21.0 5.5 127 33-171 75-224 (339)
187 COG1086 Predicted nucleoside-d 82.8 3.9 9.9E-05 21.0 10.4 87 2-90 118-208 (588)
188 pfam01210 NAD_Gly3P_dh_N NAD-d 82.4 4 0.0001 20.9 10.7 30 1-30 1-30 (159)
189 TIGR01092 P5CS delta l-pyrroli 82.3 0.94 2.4E-05 25.4 2.2 11 261-271 636-646 (738)
190 PRK03803 murD UDP-N-acetylmura 82.3 1.8 4.6E-05 23.3 3.7 89 2-96 9-103 (448)
191 pfam03054 tRNA_Me_trans tRNA m 82.2 4.1 0.0001 20.8 7.2 130 1-146 1-142 (354)
192 COG1648 CysG Siroheme synthase 82.1 4.1 0.0001 20.8 6.4 24 1-24 13-36 (210)
193 PRK00109 Holliday junction res 81.9 2.1 5.4E-05 22.9 3.9 71 50-137 42-112 (141)
194 PRK06522 2-dehydropantoate 2-r 81.7 2.9 7.5E-05 21.8 4.5 32 1-33 1-32 (307)
195 PRK08811 uroporphyrinogen-III 81.6 4.3 0.00011 20.7 8.6 93 2-117 18-114 (264)
196 PRK08309 short chain dehydroge 81.5 4.3 0.00011 20.7 8.6 81 1-85 1-101 (182)
197 TIGR00018 panC pantoate--beta- 81.5 3.6 9.2E-05 21.2 4.9 137 15-162 43-210 (310)
198 PRK09275 aspartate aminotransf 81.2 1.9 4.9E-05 23.2 3.4 21 378-398 498-518 (531)
199 COG3494 Uncharacterized protei 81.2 4.4 0.00011 20.6 7.6 63 4-69 9-76 (279)
200 pfam00056 Ldh_1_N lactate/mala 81.0 3.4 8.7E-05 21.4 4.7 35 1-35 1-36 (142)
201 cd00757 ThiF_MoeB_HesA_family 80.9 4.5 0.00012 20.5 8.3 66 1-67 22-93 (228)
202 TIGR01815 TrpE-clade3 anthrani 80.6 1.8 4.5E-05 23.4 3.1 31 300-330 606-636 (726)
203 PRK13303 L-aspartate dehydroge 80.3 4.7 0.00012 20.4 10.2 83 1-90 2-89 (265)
204 PRK03815 murD UDP-N-acetylmura 80.2 3.4 8.7E-05 21.4 4.4 23 1-23 1-23 (401)
205 PRK12550 shikimate 5-dehydroge 79.8 4.8 0.00012 20.3 5.1 20 45-64 42-61 (272)
206 pfam04127 DFP DNA / pantothena 79.6 4.9 0.00012 20.2 5.1 74 2-81 4-97 (197)
207 cd01674 Homoaconitase_Swivel H 79.3 2.7 6.9E-05 22.1 3.7 21 124-144 59-79 (129)
208 pfam04694 Corona_3 Coronavirus 78.7 3.6 9.1E-05 21.2 4.1 28 369-396 31-58 (60)
209 COG2308 Uncharacterized conser 78.6 3.7 9.4E-05 21.1 4.2 14 157-170 178-191 (488)
210 PRK13477 bifunctional pantoate 78.6 5.3 0.00014 20.0 5.7 149 47-203 69-255 (512)
211 TIGR01819 F420_cofD LPPG:Fo 2- 78.5 3.6 9.1E-05 21.2 4.1 240 101-395 81-358 (359)
212 TIGR00232 tktlase_bact transke 78.4 5.4 0.00014 20.0 6.2 23 374-396 560-582 (675)
213 cd01577 IPMI_Swivel Aconatase- 78.3 3.3 8.4E-05 21.5 3.9 28 2-32 19-51 (91)
214 PRK09496 trkA potassium transp 78.3 5.4 0.00014 19.9 7.5 65 1-68 1-71 (455)
215 COG1692 Calcineurin-like phosp 78.1 5.5 0.00014 19.9 5.0 21 52-72 20-40 (266)
216 TIGR03590 PseG pseudaminic aci 78.1 5.5 0.00014 19.9 8.1 68 1-69 1-88 (280)
217 PRK05579 bifunctional phosphop 78.0 5 0.00013 20.2 4.7 169 2-206 6-204 (392)
218 pfam01488 Shikimate_DH Shikima 77.9 5.5 0.00014 19.9 6.3 66 1-69 13-82 (134)
219 PRK08655 prephenate dehydrogen 77.6 5.6 0.00014 19.8 7.2 33 1-35 1-34 (441)
220 COG4569 MhpF Acetaldehyde dehy 77.3 5.7 0.00015 19.8 5.5 90 1-90 5-99 (310)
221 cd00755 YgdL_like Family of ac 77.2 5.8 0.00015 19.7 9.0 66 2-68 13-84 (231)
222 PRK07688 thiamine/molybdopteri 77.1 5.8 0.00015 19.7 9.0 66 1-67 25-98 (339)
223 cd05292 LDH_2 A subgroup of L- 77.1 5.8 0.00015 19.7 5.0 35 1-35 1-35 (308)
224 pfam00208 ELFV_dehydrog Glutam 76.8 5.9 0.00015 19.7 6.5 128 2-156 34-173 (237)
225 PRK05301 pyrroloquinoline quin 76.8 5.9 0.00015 19.7 6.4 91 49-139 78-185 (375)
226 cd00764 Eukaryotic_PFK Phospho 76.7 5.9 0.00015 19.6 8.7 36 56-91 91-148 (762)
227 PRK06476 pyrroline-5-carboxyla 76.2 6.1 0.00016 19.5 6.5 64 1-69 1-68 (255)
228 PRK12921 2-dehydropantoate 2-r 76.0 5.6 0.00014 19.8 4.5 32 1-33 1-32 (306)
229 COG0421 SpeE Spermidine syntha 75.6 6.3 0.00016 19.4 7.3 65 2-69 79-156 (282)
230 TIGR00250 TIGR00250 conserved 75.0 3.3 8.4E-05 21.5 3.1 63 48-127 35-100 (133)
231 COG1810 Uncharacterized protei 74.9 6.6 0.00017 19.3 8.5 15 127-141 124-138 (224)
232 PRK06545 prephenate dehydrogen 74.8 6.6 0.00017 19.3 7.3 65 1-70 1-68 (357)
233 PRK07588 hypothetical protein; 74.7 5.8 0.00015 19.7 4.3 29 1-29 1-29 (391)
234 PRK05599 hypothetical protein; 74.5 6.7 0.00017 19.3 8.6 65 1-68 1-83 (246)
235 PRK12555 chemotaxis-specific m 74.5 6.7 0.00017 19.2 10.8 103 1-146 2-108 (340)
236 cd05565 PTS_IIB_lactose PTS_II 74.2 6.8 0.00017 19.2 7.4 86 1-102 1-89 (99)
237 pfam01820 Dala_Dala_lig_N D-al 74.0 5 0.00013 20.2 3.9 89 1-92 1-110 (110)
238 PRK07680 late competence prote 73.9 6.9 0.00018 19.2 7.2 64 1-69 1-69 (273)
239 COG1088 RfbB dTDP-D-glucose 4, 73.8 7 0.00018 19.1 7.8 66 1-67 1-79 (340)
240 TIGR02049 gshA_ferroox glutama 73.8 1.7 4.3E-05 23.6 1.4 181 74-259 165-400 (436)
241 cd06218 DHOD_e_trans FAD/NAD b 73.7 7 0.00018 19.1 10.0 10 148-157 105-114 (246)
242 cd06325 PBP1_ABC_uncharacteriz 73.5 7.1 0.00018 19.1 5.7 96 62-169 81-181 (281)
243 PRK08229 2-dehydropantoate 2-r 73.1 6.9 0.00018 19.2 4.4 29 1-31 3-31 (341)
244 PRK06223 malate dehydrogenase; 72.7 7.4 0.00019 19.0 5.3 111 1-133 1-127 (312)
245 COG0816 Predicted endonuclease 72.7 6.4 0.00016 19.4 4.2 70 49-135 40-109 (141)
246 COG1168 MalY Bifunctional PLP- 72.6 4.1 0.0001 20.8 3.1 109 51-170 66-188 (388)
247 PRK13978 ribose-5-phosphate is 71.7 6.2 0.00016 19.5 3.9 88 48-144 1-99 (228)
248 PRK08762 molybdopterin biosynt 71.4 7.9 0.0002 18.8 8.9 18 110-127 96-113 (379)
249 PRK12475 thiamine/molybdopteri 71.2 7.9 0.0002 18.7 8.5 30 2-32 26-55 (337)
250 PRK13435 response regulator; P 71.2 8 0.0002 18.7 8.2 114 1-172 2-117 (141)
251 cd01968 Nitrogenase_NifE_I Nit 71.2 8 0.0002 18.7 9.5 92 51-143 75-190 (410)
252 PRK05993 short chain dehydroge 71.1 8 0.0002 18.7 9.3 63 3-67 7-81 (277)
253 PRK00711 D-amino acid dehydrog 71.1 7.7 0.0002 18.8 4.3 30 1-32 1-30 (416)
254 PRK07261 topology modulation p 70.8 4.3 0.00011 20.7 2.9 27 1-27 1-28 (171)
255 TIGR03022 WbaP_sugtrans Undeca 70.8 8.1 0.00021 18.7 8.2 23 2-24 127-149 (456)
256 PRK10329 glutaredoxin-like pro 70.7 7.5 0.00019 18.9 4.2 41 104-145 15-58 (81)
257 PRK10669 putative cation:proto 70.5 8.2 0.00021 18.6 6.2 23 378-401 486-508 (558)
258 PRK09423 gldA glycerol dehydro 70.3 8.3 0.00021 18.6 9.0 42 49-93 71-116 (366)
259 PRK07102 short chain dehydroge 70.1 8.4 0.00021 18.6 8.5 66 1-68 1-82 (243)
260 COG0450 AhpC Peroxiredoxin [Po 69.9 3.8 9.7E-05 21.0 2.5 90 61-157 41-131 (194)
261 TIGR02632 RhaD_aldol-ADH rhamn 69.8 8.5 0.00022 18.5 4.7 23 191-213 261-283 (709)
262 TIGR00507 aroE shikimate 5-deh 69.5 8.6 0.00022 18.5 4.3 18 47-64 38-57 (286)
263 PRK12549 shikimate 5-dehydroge 69.4 8.7 0.00022 18.5 4.7 18 47-64 48-65 (284)
264 COG3967 DltE Short-chain dehyd 68.9 8.9 0.00023 18.4 6.1 61 3-67 8-81 (245)
265 cd01485 E1-1_like Ubiquitin ac 68.8 8.9 0.00023 18.4 10.0 111 2-118 21-142 (198)
266 PRK13606 LPPG:FO 2-phospho-L-l 68.4 9.1 0.00023 18.3 8.1 21 1-21 1-21 (309)
267 KOG0256 consensus 68.2 8.6 0.00022 18.5 4.0 14 383-396 447-460 (471)
268 PRK05884 short chain dehydroge 68.0 9.2 0.00024 18.3 7.8 57 1-59 1-64 (223)
269 PRK02705 murD UDP-N-acetylmura 67.7 9.3 0.00024 18.2 6.5 90 4-97 4-103 (459)
270 PRK00536 speE spermidine synth 67.7 9.4 0.00024 18.2 7.0 30 61-90 138-169 (262)
271 cd01966 Nitrogenase_NifN_1 Nit 67.6 9.4 0.00024 18.2 6.7 96 51-146 70-193 (417)
272 TIGR00137 gid gid protein; Int 67.4 7.5 0.00019 18.9 3.6 27 2-30 2-30 (444)
273 PHA02117 glutathionylspermidin 67.3 4.2 0.00011 20.7 2.3 15 107-121 79-93 (395)
274 cd01421 IMPCH Inosine monophos 67.0 9.6 0.00025 18.1 4.2 113 46-169 5-154 (187)
275 COG2910 Putative NADH-flavin r 66.9 9.7 0.00025 18.1 5.1 63 1-67 1-67 (211)
276 cd01424 MGS_CPS_II Methylglyox 66.9 9.7 0.00025 18.1 6.0 54 15-70 18-75 (110)
277 PRK06182 short chain dehydroge 66.8 9.7 0.00025 18.1 9.9 78 3-97 6-94 (273)
278 TIGR02518 EutH_ACDH acetaldehy 65.7 10 0.00026 18.0 4.2 35 52-86 230-271 (528)
279 TIGR01284 alt_nitrog_alph nitr 65.7 9.8 0.00025 18.1 3.9 125 78-217 228-360 (468)
280 PRK09552 mtnX 2-hydroxy-3-keto 65.4 10 0.00026 17.9 6.5 16 128-143 80-95 (219)
281 cd05297 GH4_alpha_glucosidase_ 65.2 10 0.00026 17.9 8.0 137 1-150 1-169 (423)
282 COG1519 KdtA 3-deoxy-D-manno-o 65.2 10 0.00026 17.9 10.4 120 15-140 68-199 (419)
283 COG0289 DapB Dihydrodipicolina 64.8 11 0.00027 17.8 9.7 26 1-26 3-29 (266)
284 PRK09564 coenzyme A disulfide 64.6 11 0.00027 17.8 4.6 30 1-31 1-31 (443)
285 TIGR01469 cobA_cysG_Cterm urop 64.6 11 0.00027 17.8 6.3 42 108-156 100-141 (242)
286 PRK13111 trpA tryptophan synth 64.5 11 0.00027 17.8 4.3 47 102-149 127-175 (256)
287 COG1042 Acyl-CoA synthetase (N 64.5 9.7 0.00025 18.1 3.7 26 3-29 13-42 (598)
288 KOG0243 consensus 64.4 11 0.00027 17.8 4.7 81 135-221 66-162 (1041)
289 cd01076 NAD_bind_1_Glu_DH NAD( 63.6 11 0.00028 17.7 6.6 133 2-156 33-169 (227)
290 cd01337 MDH_glyoxysomal_mitoch 63.3 11 0.00029 17.6 5.1 34 1-34 1-35 (310)
291 cd05294 LDH-like_MDH_nadp A la 63.2 11 0.00029 17.6 5.1 117 1-139 1-138 (309)
292 TIGR00284 TIGR00284 dihydropte 63.1 11 0.00029 17.6 4.3 94 1-99 1-98 (529)
293 PRK06753 hypothetical protein; 62.9 11 0.00029 17.6 4.3 25 1-25 1-25 (373)
294 PRK02842 light-independent pro 62.8 7.1 0.00018 19.1 2.7 81 3-90 40-133 (425)
295 cd03012 TlpA_like_DipZ_like Tl 62.7 12 0.00029 17.6 3.8 73 71-146 41-116 (126)
296 PRK08328 hypothetical protein; 62.6 12 0.00029 17.6 8.0 30 2-32 29-58 (230)
297 cd03823 GT1_ExpE7_like This fa 62.5 12 0.00029 17.6 9.1 89 2-90 1-124 (359)
298 KOG3198 consensus 62.5 3 7.7E-05 21.8 0.8 33 71-111 42-74 (152)
299 TIGR01179 galE UDP-glucose 4-e 62.3 12 0.0003 17.5 5.5 63 2-67 1-81 (341)
300 PRK06217 hypothetical protein; 62.2 12 0.0003 17.5 7.3 37 1-37 2-44 (185)
301 PRK13123 consensus 62.2 12 0.0003 17.5 3.9 15 107-121 135-149 (256)
302 PTZ00287 6-phosphofructokinase 62.1 12 0.0003 17.5 7.4 93 1-93 180-309 (1439)
303 PRK13609 diacylglycerol glucos 62.0 12 0.0003 17.5 8.8 35 52-90 94-131 (388)
304 PRK05849 hypothetical protein; 61.7 12 0.0003 17.5 5.9 167 107-281 19-215 (782)
305 cd01489 Uba2_SUMO Ubiquitin ac 61.4 12 0.00031 17.4 8.0 112 2-119 1-120 (312)
306 pfam04174 DUF407 Domain of unk 61.3 7 0.00018 19.1 2.5 62 107-169 3-67 (145)
307 COG2894 MinD Septum formation 61.2 12 0.00031 17.4 5.3 28 2-31 3-37 (272)
308 cd05213 NAD_bind_Glutamyl_tRNA 60.7 12 0.00032 17.3 7.4 12 17-28 31-42 (311)
309 KOG2741 consensus 60.6 12 0.00032 17.3 7.1 88 2-91 8-101 (351)
310 cd03466 Nitrogenase_NifN_2 Nit 60.4 13 0.00032 17.3 9.6 96 51-146 73-190 (429)
311 TIGR01968 minD_bact septum sit 60.3 8.1 0.00021 18.7 2.7 30 256-285 203-237 (272)
312 PRK06101 short chain dehydroge 60.2 13 0.00032 17.3 8.4 65 1-67 1-76 (241)
313 PRK05708 2-dehydropantoate 2-r 59.7 13 0.00033 17.2 4.6 24 1-24 3-26 (305)
314 PRK13190 putative peroxiredoxi 59.6 9.1 0.00023 18.3 2.8 61 64-127 38-99 (202)
315 PRK13131 consensus 59.6 12 0.00031 17.4 3.5 13 108-120 134-146 (257)
316 cd02969 PRX_like1 Peroxiredoxi 59.3 13 0.00032 17.3 3.5 78 73-152 45-126 (171)
317 PRK10116 universal stress prot 58.9 9.4 0.00024 18.2 2.8 85 52-144 21-109 (142)
318 PRK07878 molybdopterin biosynt 58.7 13 0.00034 17.1 8.6 112 2-119 44-162 (392)
319 COG0420 SbcD DNA repair exonuc 58.6 13 0.00034 17.1 4.8 43 49-91 27-80 (390)
320 PRK10816 DNA-binding transcrip 58.6 13 0.00034 17.1 10.3 116 1-172 1-118 (223)
321 PRK06988 putative formyltransf 58.5 13 0.00034 17.1 5.6 35 2-36 4-39 (313)
322 PRK10717 cysteine synthase A; 58.1 14 0.00035 17.0 7.3 18 320-339 296-313 (334)
323 PRK07832 short chain dehydroge 58.0 14 0.00035 17.0 9.0 78 2-96 2-97 (272)
324 PRK05600 thiamine biosynthesis 57.6 14 0.00035 17.0 8.5 22 2-23 43-64 (370)
325 COG0205 PfkA 6-phosphofructoki 57.3 14 0.00036 16.9 9.0 90 1-94 3-126 (347)
326 cd06289 PBP1_MalI_like Ligand- 57.3 14 0.00036 16.9 4.7 39 52-90 45-83 (268)
327 TIGR02311 HpaI 2,4-dihydroxyhe 57.2 6.1 0.00016 19.6 1.6 147 55-227 26-182 (249)
328 PRK07411 hypothetical protein; 56.5 14 0.00037 16.8 8.7 66 2-68 40-111 (390)
329 TIGR00504 pyro_pdase pyrrolido 56.5 14 0.00036 17.0 3.3 88 49-140 47-163 (220)
330 cd06277 PBP1_LacI_like_1 Ligan 56.1 15 0.00037 16.8 3.8 15 54-68 50-64 (268)
331 PRK09982 universal stress prot 56.0 11 0.00029 17.6 2.8 44 100-143 64-109 (142)
332 PRK06953 short chain dehydroge 55.9 15 0.00038 16.8 8.6 65 1-67 1-75 (222)
333 COG2740 Predicted nucleic-acid 55.5 12 0.00031 17.4 2.9 44 123-166 17-60 (95)
334 pfam01113 DapB_N Dihydrodipico 55.1 15 0.00039 16.7 9.1 28 1-28 1-29 (122)
335 TIGR01809 Shik-DH-AROM shikima 55.0 15 0.00039 16.7 3.9 41 34-74 25-68 (291)
336 PRK12749 quinate/shikimate deh 54.8 15 0.00039 16.7 4.7 15 50-64 48-62 (288)
337 PTZ00137 2-Cys peroxiredoxin; 54.8 10 0.00027 17.9 2.5 61 64-126 44-105 (194)
338 PRK10643 DNA-binding transcrip 54.7 15 0.00039 16.6 8.7 51 1-70 1-52 (222)
339 TIGR03333 salvage_mtnX 2-hydro 54.5 13 0.00034 17.1 3.0 17 51-67 75-91 (214)
340 COG0240 GpsA Glycerol-3-phosph 54.3 16 0.0004 16.6 10.0 31 1-31 2-32 (329)
341 PRK05805 phosphate butyryltran 54.2 16 0.0004 16.6 6.0 74 48-128 2-76 (301)
342 pfam00148 Oxidored_nitro Nitro 54.2 16 0.0004 16.6 8.6 91 52-142 64-177 (398)
343 PRK07085 diphosphate--fructose 54.0 16 0.0004 16.6 8.2 94 1-94 73-203 (557)
344 COG0287 TyrA Prephenate dehydr 54.0 16 0.0004 16.6 7.0 80 1-83 4-85 (279)
345 cd00763 Bacterial_PFK Phosphof 53.7 16 0.00041 16.5 4.9 37 53-91 83-120 (317)
346 cd01980 Chlide_reductase_Y Chl 53.5 16 0.00041 16.5 5.7 39 52-90 81-123 (416)
347 PRK07577 short chain dehydroge 53.5 16 0.00041 16.5 9.4 64 2-67 5-73 (234)
348 KOG0822 consensus 53.5 14 0.00035 17.0 2.9 10 60-69 259-268 (649)
349 TIGR00853 pts-lac PTS system, 53.5 16 0.00041 16.5 4.3 56 52-116 64-120 (142)
350 pfam06973 DUF1297 Domain of un 53.4 16 0.00041 16.5 3.3 106 175-286 21-146 (188)
351 PRK07649 para-aminobenzoate/an 53.4 16 0.00041 16.5 6.5 71 3-93 2-79 (195)
352 PRK10586 hypothetical protein; 53.4 16 0.00041 16.5 3.9 39 51-93 76-118 (362)
353 PRK06398 aldose dehydrogenase; 53.3 16 0.00041 16.5 9.0 63 3-67 9-78 (256)
354 PRK00048 dihydrodipicolinate r 53.2 16 0.00041 16.5 8.8 29 1-29 3-32 (265)
355 TIGR02622 CDP_4_6_dhtase CDP-g 53.0 7.7 0.0002 18.8 1.5 32 44-75 63-94 (361)
356 PRK05637 anthranilate synthase 52.8 17 0.00042 16.4 7.1 72 1-92 2-79 (208)
357 TIGR02717 AcCoA-syn-alpha acet 52.5 17 0.00043 16.4 5.0 104 2-116 9-126 (457)
358 TIGR02539 SepCysS Sep-tRNA:Cys 52.4 17 0.00043 16.4 4.5 82 6-94 72-186 (381)
359 cd03110 Fer4_NifH_child This p 52.3 17 0.00043 16.4 5.6 18 2-19 1-24 (179)
360 cd01979 Pchlide_reductase_N Pc 51.8 17 0.00043 16.3 4.7 105 3-116 29-146 (396)
361 TIGR03239 GarL 2-dehydro-3-deo 51.8 17 0.00044 16.3 5.3 87 52-154 23-117 (249)
362 TIGR00097 HMP-P_kinase phospho 51.6 8.2 0.00021 18.6 1.5 145 52-225 57-214 (264)
363 COG1378 Predicted transcriptio 51.6 13 0.00034 17.1 2.6 70 77-147 4-75 (247)
364 PRK10507 bifunctional glutathi 51.5 11 0.00028 17.7 2.2 25 286-310 482-511 (619)
365 PRK08099 nicotinamide-nucleoti 51.5 12 0.0003 17.5 2.3 10 107-116 162-171 (411)
366 PRK11517 transcriptional regul 51.4 17 0.00044 16.3 10.9 50 1-69 1-51 (223)
367 pfam06134 RhaA L-rhamnose isom 51.3 17 0.00044 16.3 3.2 88 102-203 149-245 (416)
368 PRK00436 argC N-acetyl-gamma-g 51.1 17 0.00045 16.3 8.8 85 1-92 2-98 (345)
369 pfam01370 Epimerase NAD depend 51.0 18 0.00045 16.2 7.9 63 3-67 1-70 (235)
370 cd00765 Pyrophosphate_PFK Phos 50.8 18 0.00045 16.2 7.7 94 1-94 73-203 (550)
371 TIGR02352 thiamin_ThiO glycine 50.8 17 0.00043 16.3 3.0 52 3-60 1-64 (357)
372 PRK08267 short chain dehydroge 50.7 18 0.00045 16.2 9.0 65 1-67 1-82 (258)
373 KOG3851 consensus 50.6 18 0.00045 16.2 4.7 63 2-64 41-120 (446)
374 PRK08857 para-aminobenzoate sy 50.6 18 0.00045 16.2 7.1 71 3-93 2-79 (192)
375 PRK07310 consensus 50.5 13 0.00033 17.2 2.4 24 375-398 370-393 (395)
376 PRK01322 6-carboxyhexanoate--C 50.4 18 0.00046 16.2 3.2 62 314-400 176-240 (243)
377 PRK11880 pyrroline-5-carboxyla 50.2 18 0.00046 16.2 6.8 64 1-69 3-69 (267)
378 KOG1201 consensus 50.2 18 0.00046 16.2 6.2 59 2-62 40-109 (300)
379 pfam04321 RmlD_sub_bind RmlD s 50.1 18 0.00046 16.1 7.3 54 3-68 1-55 (284)
380 PRK10786 ribD bifunctional dia 50.1 18 0.00046 16.1 6.5 76 5-90 37-123 (367)
381 cd01487 E1_ThiF_like E1_ThiF_l 49.9 18 0.00046 16.1 8.2 30 2-32 1-30 (174)
382 PRK12428 3-alpha-hydroxysteroi 49.8 18 0.00047 16.1 8.4 64 2-67 7-73 (261)
383 PRK08644 thiamine biosynthesis 49.8 18 0.00047 16.1 8.6 30 2-32 29-58 (209)
384 pfam04392 ABC_sub_bind ABC tra 49.8 18 0.00047 16.1 5.5 96 63-170 81-181 (292)
385 PRK10610 chemotaxis regulatory 49.6 18 0.00047 16.1 10.7 88 47-172 35-126 (129)
386 PRK03147 thiol-disulfide oxido 49.6 18 0.00047 16.1 5.6 93 71-171 80-174 (176)
387 KOG3974 consensus 49.5 18 0.00047 16.1 7.5 71 55-147 70-142 (306)
388 cd01484 E1-2_like Ubiquitin ac 49.4 19 0.00047 16.1 6.4 30 2-32 1-30 (234)
389 PRK09444 pntB pyridine nucleot 49.3 6.9 0.00017 19.2 0.8 14 245-258 323-336 (459)
390 pfam07991 IlvN Acetohydroxy ac 49.1 19 0.00048 16.0 4.3 60 2-68 6-66 (165)
391 TIGR01127 ilvA_1Cterm threonin 49.0 19 0.00048 16.0 7.4 155 13-184 59-271 (381)
392 PRK13289 nitric oxide dioxygen 49.0 19 0.00048 16.0 3.2 14 47-60 67-80 (399)
393 PRK05670 anthranilate synthase 48.9 19 0.00048 16.0 7.6 72 2-93 1-79 (192)
394 PRK05597 molybdopterin biosynt 48.8 19 0.00048 16.0 8.7 66 2-68 30-101 (355)
395 COG0796 MurI Glutamate racemas 48.8 19 0.00048 16.0 9.3 124 1-145 6-143 (269)
396 COG0075 Serine-pyruvate aminot 48.7 19 0.00048 16.0 6.1 30 107-136 96-129 (383)
397 cd03802 GT1_AviGT4_like This f 48.6 19 0.00048 16.0 8.9 85 1-90 1-111 (335)
398 CHL00073 chlN photochlorophyll 48.6 15 0.00039 16.7 2.5 90 3-101 40-142 (457)
399 PRK10046 dpiA two-component re 48.6 19 0.00049 16.0 10.5 114 1-169 5-121 (225)
400 KOG2156 consensus 48.5 18 0.00045 16.2 2.8 59 119-186 286-345 (662)
401 PTZ00253 tryparedoxin peroxida 48.3 15 0.00037 16.8 2.4 16 266-281 130-146 (199)
402 TIGR01828 pyru_phos_dikin pyru 48.2 9 0.00023 18.3 1.3 170 152-336 199-422 (920)
403 PRK00973 glucose-6-phosphate i 48.1 19 0.00049 15.9 7.0 46 105-151 155-203 (454)
404 pfam01135 PCMT Protein-L-isoas 47.9 19 0.0005 15.9 3.3 14 272-285 73-86 (205)
405 TIGR00065 ftsZ cell division p 47.8 20 0.0005 15.9 4.9 96 2-107 19-157 (365)
406 TIGR03219 salicylate_mono sali 47.7 20 0.0005 15.9 4.8 25 1-25 1-25 (414)
407 cd06281 PBP1_LacI_like_5 Ligan 47.6 20 0.0005 15.9 3.0 39 52-90 45-83 (269)
408 COG0774 LpxC UDP-3-O-acyl-N-ac 47.6 12 0.0003 17.5 1.8 42 48-89 74-122 (300)
409 PRK00881 purH bifunctional pho 47.5 20 0.0005 15.9 4.3 33 364-396 415-447 (514)
410 cd05293 LDH_1 A subgroup of L- 47.5 20 0.0005 15.9 5.0 117 1-139 4-137 (312)
411 COG0345 ProC Pyrroline-5-carbo 47.5 20 0.0005 15.9 5.7 64 1-69 2-69 (266)
412 TIGR02782 TrbB_P P-type conjug 47.5 20 0.0005 15.9 7.1 157 13-190 8-184 (315)
413 TIGR01055 parE_Gneg DNA topois 47.4 20 0.0005 15.9 3.5 51 75-125 225-292 (647)
414 cd04950 GT1_like_1 Glycosyltra 47.4 20 0.00051 15.9 6.5 97 129-228 113-216 (373)
415 PRK10637 cysG siroheme synthas 47.0 20 0.00051 15.8 5.7 23 2-24 14-36 (457)
416 cd00279 YlxR Ylxr homologs; gr 47.0 20 0.00051 15.8 3.8 49 124-172 12-65 (79)
417 PRK03317 histidinol-phosphate 47.0 20 0.00051 15.8 5.7 19 50-68 148-166 (369)
418 COG1893 ApbA Ketopantoate redu 46.9 20 0.00051 15.8 4.7 23 1-23 1-23 (307)
419 PRK06179 short chain dehydroge 46.8 20 0.00052 15.8 9.3 63 3-67 7-78 (270)
420 PRK13982 bifunctional SbtC-lik 46.7 20 0.00052 15.8 4.7 170 2-206 73-275 (476)
421 cd06533 Glyco_transf_WecG_TagA 46.7 20 0.00052 15.8 9.9 26 49-74 86-111 (171)
422 PRK10538 3-hydroxy acid dehydr 46.6 20 0.00052 15.8 8.4 65 1-67 1-79 (248)
423 PRK07454 short chain dehydroge 46.4 20 0.00052 15.8 9.4 65 1-67 6-88 (241)
424 COG1819 Glycosyl transferases, 46.4 20 0.00051 15.8 2.8 31 1-32 2-37 (406)
425 TIGR01069 mutS2 MutS2 family p 46.3 6.5 0.00017 19.4 0.3 21 378-398 760-780 (834)
426 PRK13139 consensus 46.3 21 0.00052 15.7 3.6 17 53-69 34-50 (254)
427 cd06220 DHOD_e_trans_like2 FAD 46.2 21 0.00053 15.7 9.2 11 148-158 95-105 (233)
428 pfam00390 malic Malic enzyme, 46.2 18 0.00046 16.1 2.6 26 186-224 65-90 (182)
429 PRK13124 consensus 46.2 21 0.00053 15.7 4.7 99 48-150 67-175 (257)
430 PRK05437 isopentenyl pyrophosp 45.9 21 0.00053 15.7 4.4 21 126-146 175-195 (351)
431 COG2201 CheB Chemotaxis respon 45.9 21 0.00053 15.7 8.3 77 1-94 2-82 (350)
432 pfam03807 F420_oxidored NADP o 45.9 21 0.00053 15.7 7.5 62 2-69 1-65 (93)
433 pfam03808 Glyco_tran_WecB Glyc 45.9 21 0.00053 15.7 10.2 18 52-69 91-108 (172)
434 PRK13129 consensus 45.6 21 0.00054 15.7 3.6 19 107-125 141-159 (267)
435 COG1712 Predicted dinucleotide 45.5 21 0.00054 15.7 8.5 86 1-93 1-91 (255)
436 PRK13114 consensus 45.5 21 0.00054 15.7 4.2 98 50-151 73-182 (266)
437 PRK07024 short chain dehydroge 45.5 21 0.00054 15.7 8.3 64 2-67 4-82 (256)
438 TIGR02030 BchI-ChlI magnesium 45.4 9.8 0.00025 18.1 1.1 50 260-336 135-188 (340)
439 PRK06500 short chain dehydroge 45.3 21 0.00054 15.6 9.4 64 2-67 8-85 (249)
440 PRK00439 leuD 3-isopropylmalat 45.3 21 0.00054 15.6 3.6 32 28-59 4-35 (163)
441 PRK06718 precorrin-2 dehydroge 45.3 21 0.00054 15.6 6.1 24 1-24 11-34 (202)
442 cd01976 Nitrogenase_MoFe_alpha 45.2 21 0.00054 15.6 8.0 95 52-146 88-207 (421)
443 KOG2157 consensus 45.1 13 0.00034 17.1 1.8 32 136-167 198-229 (497)
444 PRK13355 bifunctional HTH-doma 45.0 19 0.00048 16.0 2.5 21 377-397 494-514 (518)
445 PRK08017 short chain dehydroge 45.0 21 0.00055 15.6 8.7 56 3-60 5-66 (256)
446 PRK05650 short chain dehydroge 44.9 22 0.00055 15.6 9.4 64 2-67 2-82 (270)
447 COG0702 Predicted nucleoside-d 44.9 22 0.00055 15.6 9.7 142 1-146 1-169 (275)
448 PRK07538 hypothetical protein; 44.8 22 0.00055 15.6 4.3 29 1-29 1-29 (413)
449 PRK11559 garR tartronate semia 44.8 22 0.00055 15.6 8.6 34 1-36 2-35 (295)
450 COG1393 ArsC Arsenate reductas 44.8 22 0.00055 15.6 5.4 101 47-166 10-115 (117)
451 PRK13302 putative L-aspartate 44.7 22 0.00055 15.6 10.4 83 1-90 7-95 (271)
452 PRK13113 consensus 44.3 22 0.00056 15.5 4.1 99 49-151 76-186 (263)
453 PRK08007 para-aminobenzoate sy 44.1 22 0.00056 15.5 6.8 72 3-93 2-79 (187)
454 PRK13187 UDP-3-O-[3-hydroxymyr 44.0 22 0.00057 15.5 3.2 42 48-89 85-133 (305)
455 TIGR00619 sbcd nuclease SbcCD, 43.9 22 0.00057 15.5 5.6 66 51-120 37-118 (275)
456 PRK01581 speE spermidine synth 43.7 22 0.00057 15.5 3.4 22 283-304 223-244 (363)
457 cd01144 BtuF Cobalamin binding 43.7 22 0.00057 15.5 6.3 81 1-91 1-85 (245)
458 TIGR03190 benz_CoA_bzdN benzoy 43.5 23 0.00057 15.5 4.7 20 11-30 15-34 (377)
459 PRK06249 2-dehydropantoate 2-r 43.3 23 0.00058 15.4 4.6 32 1-34 6-38 (313)
460 COG0059 IlvC Ketol-acid reduct 43.2 23 0.00058 15.4 4.8 65 2-72 20-85 (338)
461 COG2145 ThiM Hydroxyethylthiaz 43.2 22 0.00056 15.6 2.6 135 44-202 39-179 (265)
462 PRK12439 NAD(P)H-dependent gly 42.9 23 0.00059 15.4 8.7 23 2-24 8-30 (340)
463 cd00363 PFK Phosphofructokinas 42.9 23 0.00059 15.4 5.3 90 2-93 2-128 (338)
464 PRK13403 ketol-acid reductoiso 42.7 23 0.00059 15.4 3.6 58 2-68 18-77 (335)
465 cd01985 ETF The electron trans 42.6 23 0.00059 15.4 5.7 20 52-71 81-100 (181)
466 pfam01177 Asp_Glu_race Asp/Glu 42.6 23 0.00059 15.4 7.7 80 52-142 54-136 (212)
467 pfam04007 DUF354 Protein of un 42.5 23 0.0006 15.3 5.0 20 50-69 36-55 (335)
468 COG1598 Predicted nuclease of 42.4 16 0.00041 16.5 1.8 21 376-396 25-45 (73)
469 cd06333 PBP1_ABC-type_HAAT_lik 42.3 24 0.0006 15.3 5.0 45 52-97 56-101 (312)
470 TIGR03569 NeuB_NnaB N-acetylne 42.2 24 0.0006 15.3 3.6 22 46-67 73-94 (329)
471 pfam00465 Fe-ADH Iron-containi 42.1 24 0.0006 15.3 8.2 26 49-74 66-92 (312)
472 PRK08219 short chain dehydroge 42.0 24 0.00061 15.3 9.0 64 1-67 3-75 (226)
473 PRK05086 malate dehydrogenase; 41.9 24 0.00061 15.3 4.8 32 1-32 1-34 (312)
474 pfam07355 GRDB Glycine/sarcosi 41.9 24 0.00061 15.3 5.5 75 50-149 68-142 (349)
475 COG4091 Predicted homoserine d 41.8 24 0.00061 15.3 8.0 174 2-185 19-220 (438)
476 PRK08255 salicylyl-CoA 5-hydro 41.7 24 0.00061 15.3 4.2 29 1-29 1-31 (770)
477 PRK13112 consensus 41.7 24 0.00061 15.3 4.0 91 51-142 112-211 (279)
478 pfam03681 UPF0150 Uncharacteri 41.7 15 0.00037 16.8 1.5 21 376-396 23-43 (48)
479 PRK10444 UMP phosphatase; Prov 41.6 24 0.00061 15.3 3.0 72 63-137 8-81 (248)
480 PTZ00286 6-phospho-1-fructokin 41.5 24 0.00062 15.2 5.6 47 48-94 173-224 (486)
481 PRK13189 peroxiredoxin; Provis 41.4 19 0.00049 15.9 2.1 87 64-157 39-126 (215)
482 PRK10558 alpha-dehydro-beta-de 41.1 24 0.00062 15.2 5.3 78 51-142 158-235 (256)
483 cd06343 PBP1_ABC_ligand_bindin 40.8 25 0.00063 15.2 3.7 55 51-105 63-117 (362)
484 PRK13599 putative peroxiredoxi 40.8 20 0.00051 15.8 2.1 87 64-157 39-126 (215)
485 cd06270 PBP1_GalS_like Ligand 40.7 25 0.00063 15.2 3.8 99 36-136 29-171 (268)
486 PRK00742 chemotaxis-specific m 40.6 25 0.00063 15.1 11.1 123 1-169 3-129 (345)
487 PRK08329 threonine synthase; V 40.4 25 0.00064 15.1 10.7 106 11-116 90-205 (348)
488 TIGR02442 Cob-chelat-sub cobal 40.4 18 0.00047 16.1 1.9 32 260-315 132-163 (688)
489 TIGR02661 MauD methylamine deh 40.2 25 0.00064 15.1 3.5 102 65-183 79-189 (189)
490 PRK06895 para-aminobenzoate sy 40.0 25 0.00065 15.1 6.6 70 1-91 3-78 (191)
491 PRK01076 L-rhamnose isomerase; 39.9 26 0.00065 15.1 3.3 159 46-236 110-273 (419)
492 CHL00101 trpG anthranilate syn 39.8 26 0.00065 15.1 6.8 70 3-91 2-77 (190)
493 pfam03352 Adenine_glyco Methyl 39.8 26 0.00065 15.1 3.4 35 70-115 132-166 (179)
494 cd01171 YXKO-related B.subtili 39.8 26 0.00065 15.1 9.4 140 2-143 10-172 (254)
495 PRK11908 NAD-dependent epimera 39.7 26 0.00065 15.1 7.4 66 1-67 1-73 (347)
496 PRK06180 short chain dehydroge 39.6 26 0.00066 15.0 9.1 93 1-110 4-111 (277)
497 KOG1430 consensus 39.6 26 0.00066 15.0 8.4 141 2-169 6-167 (361)
498 PRK05647 purN phosphoribosylgl 39.6 26 0.00066 15.0 7.4 67 1-67 1-85 (200)
499 PTZ00317 malic enzyme; Provisi 39.5 26 0.00066 15.0 2.5 33 179-224 134-169 (570)
500 smart00732 YqgFc Likely ribonu 39.4 26 0.00066 15.0 5.1 41 50-90 39-88 (99)
No 1
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=100.00 E-value=0 Score=1120.74 Aligned_cols=415 Identities=51% Similarity=0.875 Sum_probs=400.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEE--EECCCC----CHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 9589988658899999999858996789995498357511705--512878----9899999998718979999795578
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQC--VAIDIQ----NHSAIIHFCQEKHIDLVVVGPELPL 74 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~--~~i~~~----d~~~i~~~a~~~~iDlvivgpE~pL 74 (424)
|||||||+|||||||||||+||+.+.++|++||||||+.+.++ +.++.+ |+++|++||++++|||+|||||+||
T Consensus 1 MkVLviG~GGREHAla~~l~qs~~v~~~~~apGN~Gta~~~~~~~~~~~~~~~~~d~~~~~~FA~~~~idL~~iGPE~PL 80 (459)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAIEITKDVRDIEALVEFAKKKKIDLAVIGPEAPL 80 (459)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 95899748705899999873271133667826898622012544411457866300899999998469754880874101
Q ss_pred HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHCCCCE--EEEEECCCCCCC
Q ss_conf 748998986058806701066655520102357888765310-11112234401111121012420--256304653430
Q gi|254780206|r 75 VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP-TATYQHFSDPMKAKQYVQNKSMP--IVVKADGLCAGK 151 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP-t~~~~~~~~~~ea~~~~~~~g~P--vVVKp~~~agGk 151 (424)
++||+|.|+++||+||||+++|||||+||.|||+||++|||| |+.|+.|++.++|++|+++.+.| +||||||||+||
T Consensus 81 ~~G~vd~le~~Gi~~FGP~k~AA~LE~SK~FaK~fm~~~gIPGta~Y~~Ft~~eea~~y~~~~g~PA~~VVKadGLAAGK 160 (459)
T TIGR00877 81 VLGLVDALEEAGIPVFGPTKEAAQLEASKAFAKDFMKRYGIPGTAEYEVFTDPEEAKSYIQEKGAPAEIVVKADGLAAGK 160 (459)
T ss_pred HHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 20147789867951456887886433287899999996489832221000898999999984188974898056665798
Q ss_pred CCCCH----HHHHHHHHHHHHHH-----CCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 00232----35677888788751-----4453177788775205752344215776310352000111356654-44443
Q gi|254780206|r 152 GVVVA----ATVDEATSAIDRCF-----QQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDI-GPNTG 221 (424)
Q Consensus 152 GV~i~----~~~~e~~~~~~~~~-----~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~-GpnTG 221 (424)
||.|| .|.+||.++++++| ++++++|||||||+|+|+|++||+||++++|||++|||||+||+|+ |||||
T Consensus 161 GV~V~Ge~L~~~eEA~~~~~~~~~~~~FG~a~~~VVIEEfL~G~E~S~~~~~DG~~v~Plp~aQDhKR~~egD~~GpNTG 240 (459)
T TIGR00877 161 GVIVAGEQLKTNEEAIKAVEEILEQKAFGEAGERVVIEEFLEGEEVSLLAFVDGKTVIPLPPAQDHKRALEGDKKGPNTG 240 (459)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 62684760274789999999998547656668825896424880089999974866770542157650466888788557
Q ss_pred CCCEEECCC---CCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE----EEEEEEEEEECCCCCEEEEEC
Q ss_conf 443000012---3443222010000089999986204623566445448985570----489998865147751044332
Q gi|254780206|r 222 GMGACSPAL---GMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG----PYLIEYNVRFGDPECQAMMMR 294 (424)
Q Consensus 222 GMGa~~p~~---~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g----p~viE~N~R~GDPE~q~ilp~ 294 (424)
|||||||+| +++++..+++.++|++||+++|++||.+|+||||+|||||++| |+||||||||||||||+||||
T Consensus 241 GMGAYsP~phlL~~~~e~~~~~~~~I~~pt~~~l~~eG~~y~GvLYaglMl~~~G~~L~PkVlEfN~RFGDPEtq~vL~l 320 (459)
T TIGR00877 241 GMGAYSPAPHLLVFTEEVEKRIAEEIVEPTVKALRKEGTPYKGVLYAGLMLTKEGGVLVPKVLEFNVRFGDPETQAVLPL 320 (459)
T ss_pred CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 86330278784423717899998777899999998528972478741389976898864478897052788534446454
Q ss_pred CC--CCCHHHHHHHHHCCCC--CCCCCCCCCCEEEEEECC----------CCCCCCCCCCCCCCCCCC--CCCCCEEEEE
Q ss_conf 65--4411566654201333--321234444206754225----------446687757976248766--6898689983
Q gi|254780206|r 295 LE--SDILEILNSCVHGNLH--NTHINWKAEYALTVVVAT----------KGYPEEYPHGTIISKIPQ--NTGTTQLFHA 358 (424)
Q Consensus 295 L~--~dl~~il~~~~~g~L~--~~~~~~~~~~~v~Vvlas----------~GYP~~~~kg~~I~~l~~--~~~~~~ifha 358 (424)
|+ |||+++|+++++|+|+ ..+++|++.+|||||||| +|||.+|.+|++|+++.. ...+..||||
T Consensus 321 L~dqsdL~e~~~a~~eg~L~d~~~~~~~~~~~av~VvlA~GalkGR~~~~~GYP~~~~~G~~I~Gd~~~~~~~~~~vf~A 400 (459)
T TIGR00877 321 LKDQSDLLEVCLAAVEGKLDDSEVELRFDNRAAVTVVLASGALKGREYLKEGYPEDYRKGDPITGDEEEAEAEGVKVFHA 400 (459)
T ss_pred HCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCEEEEC
T ss_conf 23888889999998456665641124881783599998047532567788877888601226526718975269789973
Q ss_pred E--EEEECCEEEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHH
Q ss_conf 3--58778879981880799999628989999999999852589995753517898875
Q gi|254780206|r 359 G--TAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKE 415 (424)
Q Consensus 359 g--t~~~~g~l~t~GGRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~~~~~ 415 (424)
| |..+||.++|||||||+||+.|+||++|+++||+.+++|+|+|+|||+|||+|++.
T Consensus 401 g~~~~~~~g~~vt~GGRVL~V~a~g~~l~eA~~~Ay~a~~~i~f~G~~yRkDIG~ra~~ 459 (459)
T TIGR00877 401 GTKTEQDNGKLVTNGGRVLAVVALGKDLEEARERAYEAVEKIKFEGMFYRKDIGLRALE 459 (459)
T ss_pred CEEEEECCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC
T ss_conf 32576208737971873999983262578999999998875137987761232432469
No 2
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=0 Score=1070.79 Aligned_cols=417 Identities=52% Similarity=0.903 Sum_probs=408.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 95899886588999999998589967899954983575117055128789899999998718979999795578748998
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISD 80 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d 80 (424)
|||||||||||||||+|||++|+++.++||+||||||+.+++|++++.+|++++++||++++|||||||||+||++|++|
T Consensus 1 MkVLviGsGgREHAia~kl~~s~~v~~v~~~PGN~G~~~~~~~~~i~~~d~~~l~~~a~~~~idlviiGPE~pL~~Gi~D 80 (424)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGTALEAENVAIDVTDIEALVAFAKEEGIDLTVVGPEAPLVAGIVD 80 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
T ss_conf 97999888889999999997397989899928975887417365128579999999999849999998966788735799
Q ss_pred HHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 98605880670106665552010235788876531011112234401111121012420256304653430002323567
Q gi|254780206|r 81 ALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVD 160 (424)
Q Consensus 81 ~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~ 160 (424)
.|++.||+||||++.+||||+||.|+|+||++|+||||+|+.|+|.++|++|++++++|+|||+||||+||||.||.+.+
T Consensus 81 ~l~~~gi~vfGP~k~aA~lE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~VIKaDGLAaGKGV~V~~~~~ 160 (424)
T PRK00885 81 AFRAAGLKIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYEVFTDAEEAKAYLDEQGAPIVVKADGLAAGKGVVVAMTLE 160 (424)
T ss_pred HHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCHH
T ss_conf 99506994689497898876637999999998298987548868999999999857998899617656777517637899
Q ss_pred HHHHHHHHHHC-----CCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 78887887514-----4531777887752057523442157763103520001113566544444344300001234432
Q gi|254780206|r 161 EATSAIDRCFQ-----QINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQE 235 (424)
Q Consensus 161 e~~~~~~~~~~-----~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~ 235 (424)
|+.++++++|. +++++|||||||+|+|+|+++||||+++++||++|||||+||+|+||||||||||||+|+++++
T Consensus 161 ea~~al~~i~~~~~fg~ag~~VvIEE~L~G~E~S~~a~~DG~~~~~lp~aqDhKR~~dgD~GPNTGGMGa~sP~p~~~~~ 240 (424)
T PRK00885 161 EAEAAVDDMLAGNKFGDAGARVVIEEFLDGEEASFFALVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEE 240 (424)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99999999850332345687289997058831799999789972647021147505689999889988566788679999
Q ss_pred CCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 22010000089999986204623566445448985570489998865147751044332654411566654201333321
Q gi|254780206|r 236 LYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNLHNTH 315 (424)
Q Consensus 236 ~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~L~~~~ 315 (424)
+.+++.++|++||+++|+++|++|+|+||+|+|+|++|||||||||||||||||++||||++||+++|.++++|+|++.+
T Consensus 241 ~~~~i~~~Ii~pt~~~l~~eg~~y~GiLy~GlMit~~GpkVlEyN~RfGDPE~qvllp~L~~dl~~l~~~~~~g~L~~~~ 320 (424)
T PRK00885 241 VHDRVMEEIIEPTVKGMAAEGIPYTGVLYAGLMITKDGPKVIEFNCRFGDPETQVVLPRLKSDLVELLLAAAEGKLDEVP 320 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
T ss_conf 99999998799999999857984799987799986797558986313488588899875236199999987539855455
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 23444420675422544668775797624876668986899833587788799818807999996289899999999998
Q gi|254780206|r 316 INWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMV 395 (424)
Q Consensus 316 ~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGRVL~vv~~g~~l~eA~~~ay~~i 395 (424)
++|++++++||||||+|||.+|.+|.+|.++++...++.||||||+..+|+++|+|||||+|++.|+|+++||++||+.+
T Consensus 321 ~~~~~~~~v~Vvlas~GYP~~~~~g~~I~~~~~~~~~~~ifhagt~~~~g~l~t~GGRVl~vva~g~tl~~A~~~aY~~i 400 (424)
T PRK00885 321 LEWDDRAAVGVVLAAKGYPGDYRKGDVITGLDEAEDGVKVFHAGTKLEDGKLVTNGGRVLCVTALGDTLEEAQKRAYAAL 400 (424)
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 33347833799991698898888998704876678998999710362799899778948999998799999999999998
Q ss_pred HCCCCCCCEECCHHHHHHHHHH
Q ss_conf 5258999575351789887516
Q gi|254780206|r 396 ENIDWKHGYWREDIGLQKKERN 417 (424)
Q Consensus 396 ~~I~~~g~~yR~DIG~~~~~~~ 417 (424)
++|+|+|+|||+|||+|++.+.
T Consensus 401 ~~I~~~~~~yR~DIG~k~l~~~ 422 (424)
T PRK00885 401 DKIDFDGGFYRRDIGWRALARE 422 (424)
T ss_pred HCCCCCCCCCCCCCCHHHHHHC
T ss_conf 5267899894574336888533
No 3
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=0 Score=1059.12 Aligned_cols=414 Identities=40% Similarity=0.696 Sum_probs=402.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHH--CCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 958998865889999999985899678999549835751--170551287898999999987189799997955787489
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQ--HAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~--~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi 78 (424)
|||||||||||||||||||++|+.+.++||+|||+||+. ...+..+++.|++++++||++++|||||||||+||++|+
T Consensus 5 MkVLviGsGGREHAia~kl~~S~~v~~v~~aPGN~G~~~~~~~~~~~i~~~d~~~i~~fa~~~~idLvvvGPE~PL~~Gi 84 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNPFDLIVVGPEDPLVAGF 84 (426)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf 88999898889999999996198988799988976112345454443386699999999998499999989668886317
Q ss_pred HHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHH
Q ss_conf 98986058806701066655520102357888765310111122344011111210124202563046534300023235
Q gi|254780206|r 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAAT 158 (424)
Q Consensus 79 ~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~ 158 (424)
+|.|++.||+||||++++||||+||.|+|+||++||||||+|+.|+|.++|++|+++.++|+|||+||||+||||.||.+
T Consensus 85 ~D~l~~~gi~vfGP~k~aA~LE~SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~P~VIKaDGLAaGKGV~V~~~ 164 (426)
T PRK13789 85 ADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATE 164 (426)
T ss_pred HHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECC
T ss_conf 99984169916895989950512698999999972999760157368999999998579988996787689996695399
Q ss_pred HHHHHHHHHHHH-----CCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 677888788751-----445317778877520575234421577631035200011135665444443443000012344
Q gi|254780206|r 159 VDEATSAIDRCF-----QQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMS 233 (424)
Q Consensus 159 ~~e~~~~~~~~~-----~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~ 233 (424)
.+|+.++++++| ++++.+|||||||.|+|+|+++||||+++++||++|||||+||+|+||||||||||||+|+++
T Consensus 165 ~~eA~~al~~i~~~~~fg~ag~~VvIEE~L~G~E~S~~a~~dG~~~~~lp~aQDhKR~~dgD~GPNTGGMGaysP~p~~~ 244 (426)
T PRK13789 165 KKMAKRALKEIFKDKKFGQSGNQVVIEEFMEGQEASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVIT 244 (426)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997544233035875999974589844799997299778688644442133799999999876777786689
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3222010000089999986204623566445448985570-489998865147751044332654411566654201333
Q gi|254780206|r 234 QELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNLH 312 (424)
Q Consensus 234 ~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~L~ 312 (424)
+++.+++.++|++||+++|+++|++|+|+||+|+|+|++| ||||||||||||||||++||||++||+++|.++++|+|+
T Consensus 245 ~~~~~~i~~~ii~pt~~~l~~~g~~y~GvLy~GlMlt~~G~pkVlEfN~RfGDPE~q~iLp~L~~dl~~~~~a~~~g~L~ 324 (426)
T PRK13789 245 EAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAASTGKIK 324 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 99999999860489999998589998867653289926997699998853189168889887415499999999708866
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 32123444420675422544668775797624876668986899833587788799818807999996289899999999
Q gi|254780206|r 313 NTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAY 392 (424)
Q Consensus 313 ~~~~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGRVL~vv~~g~~l~eA~~~ay 392 (424)
..+++|++++++||||||+|||++|.||.+|...+....+.++|||||+..+|+++|+|||||+|++.|+|+++|+++||
T Consensus 325 ~~~~~~~~~~~v~vvlas~GYP~~~~kg~~I~~~~~~~~~~~vfhagt~~~~g~l~t~GGRVL~v~a~g~tl~eA~~~aY 404 (426)
T PRK13789 325 VVNLKLKQGAAAVVVLAAQGYPDSYEKNIPLNLPETSGQNVVLFHAGTKKKDGKVFSSGGRILGIVAQGKDLKDSVDQAY 404 (426)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHHHH
T ss_conf 45443026740699974688999777998851866677986999703441799899735938999997699999999999
Q ss_pred HHHHCCCCCCCEECCHHHHHHH
Q ss_conf 9985258999575351789887
Q gi|254780206|r 393 HMVENIDWKHGYWREDIGLQKK 414 (424)
Q Consensus 393 ~~i~~I~~~g~~yR~DIG~~~~ 414 (424)
+++++|+|+|+|||+|||+|++
T Consensus 405 ~~i~~I~~~g~~yR~DIG~ral 426 (426)
T PRK13789 405 SFLEKIQAPKTFYRKDIGRRAL 426 (426)
T ss_pred HHHHHCCCCCCEECCCCCHHHC
T ss_conf 9996068999880583202019
No 4
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=0 Score=1041.60 Aligned_cols=412 Identities=41% Similarity=0.733 Sum_probs=398.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCE-EEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHH
Q ss_conf 958998865889999999985899678999549835751170-5512878989999999871897999979557874899
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQ-CVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGIS 79 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~-~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~ 79 (424)
|||||||||||||||||+|+||+.+.+|||+||||||+.+++ +++++.+|++++++||++++|||||||||+||++|++
T Consensus 1 MkVLviGsGgREHAla~~l~~s~~v~~v~~aPGN~g~~~~a~~~~~i~~~d~~~i~~~a~~~~iDLvvvGPE~PL~~Giv 80 (415)
T PRK13790 1 MNVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLA 80 (415)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 97999887889999999996298989899978955765223024676855899999999981999999896078663488
Q ss_pred HHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH
Q ss_conf 89860588067010666555201023578887653101111223440111112101242025630465343000232356
Q gi|254780206|r 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATV 159 (424)
Q Consensus 80 d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~ 159 (424)
|.|+++||+||||++++||||+||.|+|+||++||||||+|+.|+|.++|++|++++++|+|||+||||+||||+||++.
T Consensus 81 D~l~~~gi~vfGP~k~aA~LE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~VIKaDGLAaGKGV~V~~~~ 160 (415)
T PRK13790 81 DILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTI 160 (415)
T ss_pred HHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCH
T ss_conf 88643897598949799515126999999999829797772550879999999861799889966866789956997999
Q ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHHCCCCCEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 7788878875144-5317778877520575234421577631035-2000111356654444434430000123443222
Q gi|254780206|r 160 DEATSAIDRCFQQ-INSTVIIEEYLEGFEVSFFALCDGKTAIPFT-TARDHKRIHDGDIGPNTGGMGACSPALGMSQELY 237 (424)
Q Consensus 160 ~e~~~~~~~~~~~-~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~-~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~ 237 (424)
+|+.++++++|.+ ...+|+|||||+|+|+|+++||||+++++|| ++|||||++|+|+||||||||||||.|++++++.
T Consensus 161 ~eA~~al~~i~~~~~~g~VvIEE~L~G~E~S~~a~~DG~~~~p~~~~aQDhKR~~dgD~GPNTGGMGaysp~p~~~~~~~ 240 (415)
T PRK13790 161 EAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVL 240 (415)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99999999985555476599987157863489999739979957754321202468999999998756677744698999
Q ss_pred EEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 01000008999998620462356644544898557048999886514775104433265441156665420133332123
Q gi|254780206|r 238 STVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNLHNTHIN 317 (424)
Q Consensus 238 ~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~L~~~~~~ 317 (424)
+++.++|++||+++|+++|++|+|+||+|+|+|++|||||||||||||||||++||||++||+++|.++++++ ..+++
T Consensus 241 ~~~~~~I~~p~~~~l~~eg~~y~GvLy~GlMlt~~GpkVlEyN~RfGDPE~q~iLp~L~~Dl~~~~~~~~~g~--~~~~~ 318 (415)
T PRK13790 241 KLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGK--RTEFK 318 (415)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHCCC--CCCEE
T ss_conf 9999870899999998559984899887799868986699987411892288898760551999999997599--87157
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 44442067542254466877579762487666898689983358778879981880799999628989999999999852
Q gi|254780206|r 318 WKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVEN 397 (424)
Q Consensus 318 ~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGRVL~vv~~g~~l~eA~~~ay~~i~~ 397 (424)
|++++++||||||+|||++|.||.+|.+++. +..+|||||+..+++++|+|||||+|++.|+|+++|+++||+++++
T Consensus 319 ~~~~~~v~vvlas~GYP~~~~kg~~I~g~~~---~~~vf~ag~~~~~~~l~t~GGRVL~v~a~g~~l~eA~~~ay~~i~~ 395 (415)
T PRK13790 319 WKNESIVGVMLASKGYPDAYEKGHKVSGFDL---NENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQ 395 (415)
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCCCCCCC---CCCEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 6378369999645889977779972557777---7619986678779989977692899999859999999999999852
Q ss_pred CCCCCCEECCHHHHHHHHHH
Q ss_conf 58999575351789887516
Q gi|254780206|r 398 IDWKHGYWREDIGLQKKERN 417 (424)
Q Consensus 398 I~~~g~~yR~DIG~~~~~~~ 417 (424)
|+|+|+|||+|||+|++++.
T Consensus 396 I~~~g~~yR~DIG~kal~~k 415 (415)
T PRK13790 396 IQSDHLFYRHDIANKALQLK 415 (415)
T ss_pred CCCCCCEECCCHHHHHHHCC
T ss_conf 68999990370667886139
No 5
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=0 Score=1025.85 Aligned_cols=420 Identities=30% Similarity=0.507 Sum_probs=385.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECC--CHHHHHCCE-----EEECCCCCHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 958998865889999999985899678999549--835751170-----5512878989999999871897999979557
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPG--NPGIAQHAQ-----CVAIDIQNHSAIIHFCQEKHIDLVVVGPELP 73 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pg--N~g~~~~~~-----~~~i~~~d~~~i~~~a~~~~iDlvivgpE~p 73 (424)
|||||||||||||||||||+||+.+.++||+|| |||++.+++ ++.++.+|++++++||++++|||||||||+|
T Consensus 1 MkVLVIGsGGREHAla~kl~~Sp~v~~l~~aPGn~NpG~~~~a~~~~~~~~~~~~~d~~~i~~fa~~~~IDLvvVGPE~P 80 (485)
T PRK05784 1 MKVLLVGDGAREHAIAEALAKSPKGYRIYALSSHLNPGIEEIVKKTGGEYFIGNPTSPGEVVKAAEEVSPDLVVIGPEEP 80 (485)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 98999898889999999996098989899973898752567764258721204877999999999981999999897388
Q ss_pred HHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 8748998986058806701066655520102357888765310-111122344011111210124202563046534300
Q gi|254780206|r 74 LVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP-TATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKG 152 (424)
Q Consensus 74 L~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP-t~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkG 152 (424)
|++|++|.|+++||+||||++++||||+||.|+|+||++|||| |+.|+.|+|.++|++|++..+ |+|||+||||+|||
T Consensus 81 L~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IPtta~~~~f~~~~~A~~~l~~~~-piVIKaDGLAaGKG 159 (485)
T PRK05784 81 LFAGVADALREEGFPVFGASSKCAEIEKSKVFARSLMWKYGIPGRLRYGVFKDVEEAYSFAEYGG-SVAIKPARQAGGKG 159 (485)
T ss_pred HHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC-CEEEECCHHCCCCC
T ss_conf 76125899973799078968899414127889999999728996640121389999999986489-84992113306785
Q ss_pred CCCHHHHH--------HHH-HHHH------HHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02323567--------788-8788------75144531777887752057523442157763103520001113566544
Q gi|254780206|r 153 VVVAATVD--------EAT-SAID------RCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIG 217 (424)
Q Consensus 153 V~i~~~~~--------e~~-~~~~------~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~G 217 (424)
|.|+.+.. |+. +.++ ..|++++++|+|||||+|+|+|+++||||+++++||++|||||++|+|+|
T Consensus 160 V~V~~~~~~~~~~~~~e~~~~~~~~~~~~~~~fg~ag~~VvIEEfL~G~E~S~~a~~DG~~~~~lp~aQDhKR~~dgD~G 239 (485)
T PRK05784 160 VKVIYDLQAYLSNEKDEVLTKGAEEIKEQLASYRDVEEKILVEEKVDGVEYTVQVLTDGESVFPLPPVQDNPHAYEYGIG 239 (485)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCEEEECCCCCCCCCCCCCCCC
T ss_conf 18822727777778999999999999987654324687099996446817999999829969989222057655689999
Q ss_pred CCCCCCCEEECC----CCCCCCCCEEEECCHHHHHHHHHHHC-CCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEE
Q ss_conf 444344300001----23443222010000089999986204-6235664454489855704899988651477510443
Q gi|254780206|r 218 PNTGGMGACSPA----LGMSQELYSTVIQKIILPTIEGMQKE-QNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMM 292 (424)
Q Consensus 218 pnTGGMGa~~p~----~~~~~~~~~~i~~~i~~~~~~~l~~~-~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~il 292 (424)
|||||||||||+ |++++++.+++ .+|++||+++|+++ |++|+|+||+|||+|++|||||||||||||||||++|
T Consensus 240 PNTGGMGAysP~~~~~P~l~~~~~~~~-~~Ii~pti~~l~~e~g~~y~GvLY~GlMit~~GPkVlEfN~RfGDPEtQ~iL 318 (485)
T PRK05784 240 PETGGMGSVSGPGELLPFIEEEEYEEA-VEIVKATVEAIRKETGERYVGVLSGQMMLTALGPTVIEYYSRLGDPEALNAL 318 (485)
T ss_pred CCCCCCEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHH
T ss_conf 899987006787667754479999999-8748999999986169972788876788618984899996887883388899
Q ss_pred ECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCC--CCCCCCCCCC--CCCCCEEEEEEEEEECCEEE
Q ss_conf 3265441156665420133332123444420675422544668775--7976248766--68986899833587788799
Q gi|254780206|r 293 MRLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYP--HGTIISKIPQ--NTGTTQLFHAGTAIVNNNLT 368 (424)
Q Consensus 293 p~L~~dl~~il~~~~~g~L~~~~~~~~~~~~v~Vvlas~GYP~~~~--kg~~I~~l~~--~~~~~~ifhagt~~~~g~l~ 368 (424)
|||++||+++|.++++|+|++.+++|++++++||||||+|||++|+ ++..|..... ...++.||||||...||+++
T Consensus 319 p~L~sDl~~l~~a~~~g~L~~~~~~~~~~~av~VVlAs~GYP~~~~~~~g~~i~~~~~~~~~~~~~vfhagt~~~~g~l~ 398 (485)
T PRK05784 319 YLYEGDFYELFELAATGKLHKAERRFKEEPTVVKAIAPLGYPLRRDLATGRRIWVDWDSIRREGCLVYFGSVEVEGGKLV 398 (485)
T ss_pred HHHHCCHHHHHHHHHCCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEEECCEEE
T ss_conf 87426399999999819988787047689569999946999997567899565268422235697899704387799899
Q ss_pred ECCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCC-CEECCHHHHHHH-HHHHHHHC
Q ss_conf 8188079999962898999999999985258999-575351789887-51644430
Q gi|254780206|r 369 ANGGRVLSATALGKTITESRELAYHMVENIDWKH-GYWREDIGLQKK-ERNVKYRN 422 (424)
Q Consensus 369 t~GGRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g-~~yR~DIG~~~~-~~~~~~~~ 422 (424)
|+|||||+|++.|+|+++||++||+++++|+|+| +|||+|||.+++ ++++++|.
T Consensus 399 t~GGRVL~v~a~g~tl~eAr~~aY~~i~~I~f~g~~~yR~DIGt~~~~~~~i~~m~ 454 (485)
T PRK05784 399 TLGSRALEILAPGDTYEEAYEKAERCASAVKGDGKLIYRHDIGSPEYMSEMAEKAE 454 (485)
T ss_pred ECCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 83692899999869899999999999850659998877288898799999999999
No 6
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=1023.36 Aligned_cols=417 Identities=51% Similarity=0.865 Sum_probs=398.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCC-CCHHHHHHHHHHHCCCEEEECCCHHHHHHHH
Q ss_conf 958998865889999999985899678999549835751170551287-8989999999871897999979557874899
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDI-QNHSAIIHFCQEKHIDLVVVGPELPLVNGIS 79 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~-~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~ 79 (424)
|||||||||||||||||||.||+.+.++|++||||||+....++++++ +|.+.|++||++++|||+|||||+||++||+
T Consensus 1 mkVLviGsGGREHAiA~kla~s~~v~~~~~apgN~G~a~~~~~~~~~~~~~~~~lv~fA~~~~idl~vVGPE~pL~~Gvv 80 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTALEAYLVNIEIDTDHEALVAFAKEKNVDLVVVGPEAPLVAGVV 80 (428)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 94999868816999999984087624999937997421134433676555889999999973999899897178764468
Q ss_pred HHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH
Q ss_conf 89860588067010666555201023578887653101111223440111112101242025630465343000232356
Q gi|254780206|r 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATV 159 (424)
Q Consensus 80 d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~ 159 (424)
|.|+++||++|||++.+||||+||.|+|+||++|||||+.|+.|++.++|++|+++++.|+|||||||++||||.|+.+.
T Consensus 81 D~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~ 160 (428)
T COG0151 81 DALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTL 160 (428)
T ss_pred HHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEECCCH
T ss_conf 99987799623867889887753999999999819996411100898999999997299889934544678985982779
Q ss_pred HHHHHHHHHHHC-----CCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 778887887514-----453177788775205752344215776310352000111356654444434430000123443
Q gi|254780206|r 160 DEATSAIDRCFQ-----QINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQ 234 (424)
Q Consensus 160 ~e~~~~~~~~~~-----~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~ 234 (424)
+|+.+++++++. +.+.+|+|||||+|+|+|++++|||++++|||++|||||+||+|+||||||||||||+|++++
T Consensus 161 eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P~~t~ 240 (428)
T COG0151 161 EEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITD 240 (428)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99999999997400014788748998533461799999976986787853145643348998998888777779887998
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 22201000008999998620462356644544898557048999886514775104433265441156665420133332
Q gi|254780206|r 235 ELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNLHNT 314 (424)
Q Consensus 235 ~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~L~~~ 314 (424)
+..+++.++|++||+++|.++|.+|+||||+|||+|++|||||||||||||||||++||||+|||+++|+++++|+|+++
T Consensus 241 e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~L~~~ 320 (428)
T COG0151 241 EVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGKLDEV 320 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999997189814788767898289967999856668835777787602609999999971875564
Q ss_pred CCCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEEEEEECC-EEEECCCCEEEEEEECCCHHHHHHHH
Q ss_conf 1234-444206754225446687757976248766689-86899833587788-79981880799999628989999999
Q gi|254780206|r 315 HINW-KAEYALTVVVATKGYPEEYPHGTIISKIPQNTG-TTQLFHAGTAIVNN-NLTANGGRVLSATALGKTITESRELA 391 (424)
Q Consensus 315 ~~~~-~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~-~~~ifhagt~~~~g-~l~t~GGRVL~vv~~g~~l~eA~~~a 391 (424)
++.| ++++++|||+||.|||.+|.+|..|+++++..+ +..+|||||+.+++ .++|+|||||+|+++|+|+++|+++|
T Consensus 321 ~~~~~~~~a~v~vvlA~~GYP~~~~kG~~I~~~~~~~~~~~~vf~Agv~~~~~~~lvt~GgRvL~v~~~g~t~~eA~~~a 400 (428)
T COG0151 321 EILFWDKGAAVGVVLAAEGYPGDPEKGDVITGDEEAEEEGAKVFHAGVKLDDGGQLVTSGGRVLAVVGTGDTLEEAQEKA 400 (428)
T ss_pred CHHHCCCCCEEEEEEECCCCCCCCCCCCEEECCHHHCCCCCEEEEEEEECCCCCEEEECCCEEEEEEECCCCHHHHHHHH
T ss_conf 42221578569999905888988889988764756426683899966721579559964885899996589999999999
Q ss_pred HHHHHCCCCCCCEECCHHHHHHHHHH
Q ss_conf 99985258999575351789887516
Q gi|254780206|r 392 YHMVENIDWKHGYWREDIGLQKKERN 417 (424)
Q Consensus 392 y~~i~~I~~~g~~yR~DIG~~~~~~~ 417 (424)
|+.+++|+|+|+|||+|||+|++.+.
T Consensus 401 y~~~~~i~~~g~~yRkDIG~~a~~~~ 426 (428)
T COG0151 401 YEALEKIHFDGLFYRKDIGSRALERK 426 (428)
T ss_pred HHHHHHCCCCCCEEECCCCHHHHHHH
T ss_conf 99996357789556343346655420
No 7
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=0 Score=977.54 Aligned_cols=418 Identities=30% Similarity=0.432 Sum_probs=381.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEE-EECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHH
Q ss_conf 9589988658899999999858996789995498357511705-512878989999999871897999979557874899
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQC-VAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGIS 79 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~-~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~ 79 (424)
|||||||||||||||||+|+||+.+..+++.|||||+...+++ +.++..|++.|++||++++|||||||||+||++|++
T Consensus 3 MkVLViGsGGREHAla~kl~~s~~~~~~~~g~gn~g~~~~~~~~~~~~~~d~~~i~~~a~~~~idLvvvGPE~pL~~Gi~ 82 (435)
T PRK06395 3 MKVMLVGSGGREDAIARAIKRSGAILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLATPLV 82 (435)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHCCHH
T ss_conf 77999887889999999985598844999899967877623234656856999999999984999999897678866145
Q ss_pred HHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHH-
Q ss_conf 8986058806701066655520102357888765310-11112234401111121012420256304653430002323-
Q gi|254780206|r 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP-TATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAA- 157 (424)
Q Consensus 80 d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP-t~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~- 157 (424)
|.|++.|+|||||++++||||+||.|+|+||++|||| |++|..+.|.+++..++.+.++|+||||||||+||||.|+.
T Consensus 83 D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IP~ta~~~~~~~~~ea~~~~~~~~~piVIKadGLAaGKGV~V~~~ 162 (435)
T PRK06395 83 NNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGE 162 (435)
T ss_pred HHHHHCCCCEECCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECC
T ss_conf 59976899466842887326327988999999809985664532399999999999709984897342257896489558
Q ss_pred ---HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC----
Q ss_conf ---5677888788751445317778877520575234421577631035200011135665444443443000012----
Q gi|254780206|r 158 ---TVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPAL---- 230 (424)
Q Consensus 158 ---~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~---- 230 (424)
+.+|+..++.+.+ +.++.|+|||||.|+|+|+++||||+++++||++|||||++|+|+||||||||||||++
T Consensus 163 ~~~~~~ea~~~~~~~~-~~~~~vvIEE~L~G~E~S~~a~~dG~~~~~lp~aqDhKR~~dgD~GPNTGGMGaysp~~~~~p 241 (435)
T PRK06395 163 QLNSVDEAIRYAIEIL-DRDGVVLIEKKMTGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLP 241 (435)
T ss_pred CHHHHHHHHHHHHHHH-HCCCEEEEEEEEECCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 5778999999999887-348859999998441689999976995585873012533447999999998745688888874
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 34432220100000899999862046235664454489855704899988651477510443326544115666542013
Q gi|254780206|r 231 GMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGN 310 (424)
Q Consensus 231 ~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~ 310 (424)
+++++..+++ ++|++||+++|++++++|+|+||+|||+|++|||||||||||||||||++||||++||+++|.++++|+
T Consensus 242 ~l~~~~~e~~-~~Ii~pti~~l~~eg~~y~GvLy~GlMit~~gpkVlEyN~RfGDPE~QviLp~L~~Dl~~ll~a~~~g~ 320 (435)
T PRK06395 242 FLSKDAPERA-KHILNDIIRAMKDENNPFKGIMYGQFMDTPNGVKVIEINARFADPEGINVLYLLKSDFVETLHQIYSGN 320 (435)
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 3277899999-999999999999649970899877898508996489986203880688887760052999999997088
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHH
Q ss_conf 33321234444206754225446687757976248766689868998335877887998188079999962898999999
Q gi|254780206|r 311 LHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESREL 390 (424)
Q Consensus 311 L~~~~~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGRVL~vv~~g~~l~eA~~~ 390 (424)
|+. ++.|++++++|||+||.|||++|.+|...........++.+|||||+..+++++|+|||||+||+.|+|+++||++
T Consensus 321 L~~-~~~~~~~~~v~vvlas~GYP~~~~kg~i~i~~~~~~~~~~vfhagt~~~~~~l~t~GGRVl~v~a~g~sl~eA~~~ 399 (435)
T PRK06395 321 LNG-SIKFERKATVLKYIVPPGYGENPSPGRIKIDKTIFDSNSDVYYASVSGTLNDVKTSGSRSLAIIAKGDSIPEASEK 399 (435)
T ss_pred CCC-CCEEECCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHH
T ss_conf 887-7543069879999977888877808763256444579998998167767993998238489999987999999999
Q ss_pred HHHHHHCCCCCCCEECCHHHHHHH-HHHHHHHC
Q ss_conf 999985258999575351789887-51644430
Q gi|254780206|r 391 AYHMVENIDWKHGYWREDIGLQKK-ERNVKYRN 422 (424)
Q Consensus 391 ay~~i~~I~~~g~~yR~DIG~~~~-~~~~~~~~ 422 (424)
||+.+++|++. +|||+|||.|++ +++++.+.
T Consensus 400 aY~~i~~I~~~-~y~R~DIG~r~~~~~~i~~~~ 431 (435)
T PRK06395 400 VDSDLNAVHGS-YYVRRDIGDSDFIRKKIKNAK 431 (435)
T ss_pred HHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHH
T ss_conf 99998431589-667188772899999999899
No 8
>KOG0237 consensus
Probab=100.00 E-value=0 Score=964.18 Aligned_cols=416 Identities=49% Similarity=0.846 Sum_probs=401.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCC----EEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 95899886588999999998589967899954983575117----05512878989999999871897999979557874
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHA----QCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~----~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
|+|||||||||||||||||+|||.+.+|||+|||.|++..+ .+.+|+..|++++..||++++|.+|+||||.||++
T Consensus 3 ~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~~ala~f~~e~~I~lVvvGPE~PL~~ 82 (788)
T KOG0237 3 VNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALASFCKEHNINLVVVGPELPLVA 82 (788)
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHH
T ss_conf 37999758842768888763287555389836988745675123755655765599999999874621899787326542
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC-EEEEEECCCCCCCCCCC
Q ss_conf 89989860588067010666555201023578887653101111223440111112101242-02563046534300023
Q gi|254780206|r 77 GISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM-PIVVKADGLCAGKGVVV 155 (424)
Q Consensus 77 gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~-PvVVKp~~~agGkGV~i 155 (424)
|++|.|+..|||||||++.+||||+||.|+|+||.+|||||++|+.|++.++|+.|+++.++ ++|||+||+|+||||.|
T Consensus 83 Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv 162 (788)
T KOG0237 83 GLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGKGVIV 162 (788)
T ss_pred HHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEE
T ss_conf 35666640585101743777776641788998898639983202640787998999984898564896055245771574
Q ss_pred HHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 23567788878875-----1445317778877520575234421577631035200011135665444443443000012
Q gi|254780206|r 156 AATVDEATSAIDRC-----FQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPAL 230 (424)
Q Consensus 156 ~~~~~e~~~~~~~~-----~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~ 230 (424)
+.+.+|+.+|++.+ |++++..|+|||||+|.|+|+.+|+||.++.+||++|||||++|+|+||||||||||+|.|
T Consensus 163 ~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEGeEvS~laftDG~s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paP 242 (788)
T KOG0237 163 AKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEGEEVSFLAFTDGYSVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAP 242 (788)
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 05479999999999854441356645861123076257899985573023388510025530789999888865565477
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 34432220100000899999862046235664454489855704899988651477510443326544115666542013
Q gi|254780206|r 231 GMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGN 310 (424)
Q Consensus 231 ~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~ 310 (424)
..++++.+.++++|++||+++|+.+|++|.|+||+|+|+|++||+||||||||||||||++||+|++||.+++++|++++
T Consensus 243 v~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~~~~~ 322 (788)
T KOG0237 243 VASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDGPKVLEFNVRFGDPETQVLLPLLESDLAEVILACCNGR 322 (788)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56989999999887667665787639962568765468835996079984013892065659878767999999986187
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHH
Q ss_conf 33321234444206754225446687757976248766689-86899833587788799818807999996289899999
Q gi|254780206|r 311 LHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTG-TTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRE 389 (424)
Q Consensus 311 L~~~~~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~-~~~ifhagt~~~~g~l~t~GGRVL~vv~~g~~l~eA~~ 389 (424)
|+..++.|++.++|+|||||.|||++|.||..|+++++... ...||||||...+++++|||||||+|++.++++++|++
T Consensus 323 L~~~~i~w~~~sa~~VV~as~gYP~sy~KG~~It~~~~~~~~~~rVFHAGTs~~ss~vvTNGGRVLsVTA~~~~L~sA~e 402 (788)
T KOG0237 323 LDTVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPEADRPGTRVFHAGTSLDSSNVVTNGGRVLSVTATGDDLESAAE 402 (788)
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCEEEEEEECCCHHHHHHH
T ss_conf 45567541146148999905898987768763016766678762698625630245247538659999716730999999
Q ss_pred HHHHHHHCCCCCCCEECCHHHHHHHHH
Q ss_conf 999998525899957535178988751
Q gi|254780206|r 390 LAYHMVENIDWKHGYWREDIGLQKKER 416 (424)
Q Consensus 390 ~ay~~i~~I~~~g~~yR~DIG~~~~~~ 416 (424)
.||+.++.|+|.|+|||+|||+|+++.
T Consensus 403 ~Ayk~v~~I~Fsg~~yRkDI~~ra~~~ 429 (788)
T KOG0237 403 TAYKAVQVISFSGKFYRKDIAWRAFKN 429 (788)
T ss_pred HHHHHHEEEEECCCCCCCHHHHHHCCH
T ss_conf 998776187305522110346553021
No 9
>pfam01071 GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Probab=100.00 E-value=0 Score=371.99 Aligned_cols=188 Identities=54% Similarity=0.924 Sum_probs=180.1
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC-----CCH
Q ss_conf 010235788876531011112234401111121012420256304653430002323567788878875144-----531
Q gi|254780206|r 101 SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ-----INS 175 (424)
Q Consensus 101 ~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~-----~~~ 175 (424)
+||.|||++|+++|||||+|..++|.++++++++++|||+||||++++||+||.+|+|.+|+.+++.+++.. .+.
T Consensus 1 gdK~~~r~~l~~~gip~p~~~~~~~~~ea~~~~~~~g~P~VvKp~~~~gs~Gv~~v~~~~e~~~a~~~~~~~~~~~~~~~ 80 (193)
T pfam01071 1 GSKSFAKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMDNEEAIKAVDEILEQKKFGEAGE 80 (193)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98899999999869899990787899999999997699889997434678837995458999999999985230357899
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHC
Q ss_conf 77788775205752344215776310352000111356654444434430000123443222010000089999986204
Q gi|254780206|r 176 TVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKE 255 (424)
Q Consensus 176 ~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~ 255 (424)
+|||||||+|+|+|+++++||+++.++++++||||++++|.||+|||||+|+|.|.+++++.+++.+.++++++++|+.+
T Consensus 81 ~vlvEefl~G~E~sv~~~~dg~~~~~~~~~~~~k~~~~~d~g~~tg~~g~~~p~~~~~~~~~~~~~~~i~~~~~~al~~~ 160 (193)
T pfam01071 81 PVVIEEFLEGEEVSVLAFVDGKTVKPLPPAQDHKRLGEGDTGPNTGGMGAYSPAPVLTPELLERIKETIVEPTVDGLRKE 160 (193)
T ss_pred CEEEEEECCCCEEEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78998720571655789840997997142176445015788887799724634755898999999999999999999974
Q ss_pred CCEEEEEEEEEEEEECCEEEEEEEEEEECCCCC
Q ss_conf 623566445448985570489998865147751
Q gi|254780206|r 256 QNPFQGVLFAGLMITEQGPYLIEYNVRFGDPEC 288 (424)
Q Consensus 256 ~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~ 288 (424)
|++|+|++|+++|+|++||||||+|+|||||||
T Consensus 161 g~~~~G~~h~e~~lt~~GP~vIEiN~RlGdpe~ 193 (193)
T pfam01071 161 GIPYKGVLYAGLMLTKDGPKVLEFNCRFGDPET 193 (193)
T ss_pred CCCCEEEEEEEEEEECCCEEEEEEECCCCCCCC
T ss_conf 999688999999998995799999399989998
No 10
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=5.5e-36 Score=280.04 Aligned_cols=367 Identities=21% Similarity=0.296 Sum_probs=259.7
Q ss_pred EEEEECCC--HHHHHHHHHHHHCCCCCEEEEE-C--CCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 58998865--8899999999858996789995-4--98357511705512878989999999871897999979557874
Q gi|254780206|r 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSI-P--GNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 2 kILviGsG--grEhAl~~~l~~s~~~~~v~~~-p--gN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
||+|+|+| ||.-| .+.++-+. ++++. | +.|+.....+.+..+..|.+++.+|+++.++|.+....|.. ..
T Consensus 14 kIgIlGgGQLg~Mla--~aA~~LG~--~vivld~~~d~PA~~vAd~~~~~~~~D~~al~~~a~~~~~DvvT~E~E~V-~~ 88 (395)
T PRK09288 14 RVMLLGSGELGKEVA--IEAQRLGV--EVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDLIVPEIEAI-AT 88 (395)
T ss_pred EEEEECCCHHHHHHH--HHHHHCCC--EEEEECCCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCCC-CH
T ss_conf 899989889999999--99998799--89998489959446728657977878999999999983899899785447-88
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHH-HHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCC
Q ss_conf 8998986058806701066655520102357888-765310111122344011111210124202563046534300023
Q gi|254780206|r 77 GISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC-TKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVV 155 (424)
Q Consensus 77 gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l-~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i 155 (424)
...+.|++.|++++ |+.++.++..||...|+++ +++|||||+|..+++.+++.++++++|||+|+||....+|||+.+
T Consensus 89 ~~L~~le~~G~~v~-Ps~~al~i~qdR~~~k~~~~~~lgIPt~~f~~v~s~~el~~~~~~lG~P~vlK~~~G~DGKGq~~ 167 (395)
T PRK09288 89 DALVELEAEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPCVVKPVMSSSGKGQSV 167 (395)
T ss_pred HHHHHHHHCCCEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCEEE
T ss_conf 99999986893367-99999999876789999999746999999547089999999999829875872241578875289
Q ss_pred HHHHHHHHHHHHHHHCC---CCHHHHHHHHHH-CCCCCEEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 23567788878875144---531777887752-05752344215--7763103520001113566544444344300001
Q gi|254780206|r 156 AATVDEATSAIDRCFQQ---INSTVIIEEYLE-GFEVSFFALCD--GKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPA 229 (424)
Q Consensus 156 ~~~~~e~~~~~~~~~~~---~~~~VliEefl~-G~E~Sv~~i~d--G~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~ 229 (424)
+++.+|+.++++.+... ...++++|+|++ ..|+|+.+..+ |+ +.++|++. |.+. +++.- =++.|+
T Consensus 168 v~~~~dl~~a~~~a~~~~~~~~~~~ivE~~v~f~~E~Svi~aR~~~g~-~~~~~pve-~~~~-~gil~------~s~~Pa 238 (395)
T PRK09288 168 VRSPEDIEAAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAVDGG-THFCAPIG-HRQE-DGDYR------ESWQPQ 238 (395)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCCC-EEEECCCC-CEEE-CCEEE------EEECCC
T ss_conf 668788899999998507578970899888536179999999969998-89966854-2553-34279------971577
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 23443222010000089999986204623566445448985570489998865147751044332654411566654201
Q gi|254780206|r 230 LGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHG 309 (424)
Q Consensus 230 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g 309 (424)
+ ++++..+++ +++.++++++| .|+|++.++|.+++++.+|.|+++|..+.---++-..-.+-|-..+-+++.-
T Consensus 239 ~-i~~~v~~~a-~~ia~~i~~~L-----~~vGvl~VEfFv~~d~llvNEiAPR~HNSGH~Ti~~~~~sQFe~hlRai~gl 311 (395)
T PRK09288 239 P-MSPAALEEA-QEIAKKVTDAL-----GGRGLFGVELFVKGDEVYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGL 311 (395)
T ss_pred C-CCHHHHHHH-HHHHHHHHHHC-----CCCCEEEEEEEEECCEEEEEEECCCCCCCCEEEEHHCCCCHHHHHHHHHCCC
T ss_conf 8-999999999-99999999974-----8714488999997890899992078778621762103541999999998099
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEEEEEECCEEEECCCCEEEE-EEECCCHHH
Q ss_conf 3333212344442067542254466877579762487666--8986899833587788799818807999-996289899
Q gi|254780206|r 310 NLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQN--TGTTQLFHAGTAIVNNNLTANGGRVLSA-TALGKTITE 386 (424)
Q Consensus 310 ~L~~~~~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~--~~~~~ifhagt~~~~g~l~t~GGRVL~v-v~~g~~l~e 386 (424)
-| .+.++....++.++|...-+ .+..+.++++. .++.++.+ -|+-.+.+||.+.. |.+|+|+++
T Consensus 312 Pl--g~~~~~~p~a~~~~lg~~~~-----~~~~~~~~~~~~~~p~~~~h~------YGK~~~r~gRKmGHvt~~g~~~~~ 378 (395)
T PRK09288 312 PI--PDIRLYGPAASAVILAEGES-----ANPSFDGLAEALAVPGTDVRL------FGKPEIRGGRRMGVALATAEDVEE 378 (395)
T ss_pred CC--CCCCCCCCCEEEEEECCCCC-----CCCCHHHHHHHHCCCCCEEEE------ECCCCCCCCCCEEEEEEEECCHHH
T ss_conf 88--98520367379999526667-----786634699997199987999------289999899833899986099999
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 99999999852589995
Q gi|254780206|r 387 SRELAYHMVENIDWKHG 403 (424)
Q Consensus 387 A~~~ay~~i~~I~~~g~ 403 (424)
|+++||.++.+|+.+|.
T Consensus 379 a~~~a~~a~~~i~v~g~ 395 (395)
T PRK09288 379 AREKAKKAAAKVKVRGS 395 (395)
T ss_pred HHHHHHHHHHHEEECCC
T ss_conf 99999999744582789
No 11
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00 E-value=1.7e-37 Score=290.96 Aligned_cols=288 Identities=20% Similarity=0.391 Sum_probs=240.2
Q ss_pred EEEEECCC------HHH------HHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 58998865------889------99999998589967899954983575----117055128789899999998718979
Q gi|254780206|r 2 RVLLIGSG------GRE------HALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsG------grE------hAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
|||||||| |-| || +|+|++... +..+.+-||.|. .+++..++++..+|.|+++.+.+++++
T Consensus 575 ~~lvlGSGp~RIGqgvEFDYc~Vh~-~~aLr~~Gy--e~ImiN~NPETVSTDyD~sDrLYFEplt~E~Vm~I~e~E~~~G 651 (1089)
T TIGR01369 575 KVLVLGSGPNRIGQGVEFDYCCVHA-VLALREAGY--ETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEG 651 (1089)
T ss_pred EEEEECCCCEECCCCEEEHHHHHHH-HHHHHHCCC--EEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEHEEECCCCE
T ss_conf 6899878451406631205678999-999987299--5999977899743666651011587635031001100058667
Q ss_pred EEE--CCCHHHHHHHHHHHHHCC-CCEEECCHHHHH-HHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 999--795578748998986058-806701066655-5201023578887653101111223440111112101242025
Q gi|254780206|r 66 VVV--GPELPLVNGISDALNAAG-FKVFGPSQRAAK-LESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIV 141 (424)
Q Consensus 66 viv--gpE~pL~~gi~d~l~~~g-i~v~Gp~~~aa~-le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvV 141 (424)
||| |-..|+ .+|+.|++.| ++++|.|.++.- .|.+..| -++|++.|||+|+|..++|.++|.++++++||||+
T Consensus 652 VIVq~GGQtp~--nlA~~L~~~GG~~iLGTS~~~ID~AEDR~kF-s~~l~~Lgi~QP~~~~a~s~eea~~~A~~iGYPvl 728 (1089)
T TIGR01369 652 VIVQFGGQTPL--NLAKELEEAGGVPILGTSPESIDRAEDREKF-SELLDELGIPQPEWKIATSVEEAKEFASEIGYPVL 728 (1089)
T ss_pred EEEECCCHHHH--HHHHHHHHCCCCEEECCCHHHHHHHCCHHHH-HHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEE
T ss_conf 99974873267--8999999708931736885787513186799-99997158798988527287999999854699289
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCC-CC--CCCCCC
Q ss_conf 63046534300023235677888788751445-31777887752-057523442157763103520001-11--356654
Q gi|254780206|r 142 VKADGLCAGKGVVVAATVDEATSAIDRCFQQI-NSTVIIEEYLE-GFEVSFFALCDGKTAIPFTTARDH-KR--IHDGDI 216 (424)
Q Consensus 142 VKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-~~~VliEefl~-G~E~Sv~~i~dG~~~~~l~~~~dy-Kr--~~~~d~ 216 (424)
|+|++.-||++|.|++|.+|+..+++.++.-+ .++|||.+||+ |.|+-|+++|||+++++..+. .| .+ +|.||.
T Consensus 729 vRPSYVLgG~aM~iv~~~eeL~~yl~~a~~~S~~~PVlidky~e~A~E~dVD~v~Dg~~v~i~gI~-EHiE~AGVHSGDs 807 (1089)
T TIGR01369 729 VRPSYVLGGRAMEIVYNEEELARYLEEAVEVSPEHPVLIDKYLEDAVEIDVDAVSDGEEVLIPGIM-EHIEEAGVHSGDS 807 (1089)
T ss_pred ECCCCCCCCCCHHEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEHH-HHHHHCCCCCCCH
T ss_conf 816830033621002678899999999997208997698885288889999899728848996231-2342136761305
Q ss_pred CCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC-CEEEEEEEEEEECCCCCEEEEEC-
Q ss_conf 4444344300001234432220100000899999862046235664454489855-70489998865147751044332-
Q gi|254780206|r 217 GPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE-QGPYLIEYNVRFGDPECQAMMMR- 294 (424)
Q Consensus 217 GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~-~gp~viE~N~R~GDPE~q~ilp~- 294 (424)
- ++.|++.++++..+++ +.+.+..+++|+ ++|++.+||.+++ +.+||||.|+|=.= |--.+.-
T Consensus 808 ~-------~~~Pp~~L~~~~~~~i-~~~~~~iA~~L~-----v~Gl~NiQf~~~~E~~~yVIE~NpRASR--tVPFvSKa 872 (1089)
T TIGR01369 808 T-------CVLPPQTLSEDIVKRI-KDIVRKIAKELN-----VKGLFNIQFVVKDEGEVYVIEVNPRASR--TVPFVSKA 872 (1089)
T ss_pred H-------HCCCCCCCCHHHHHHH-HHHHHHHHHHCC-----CCCCEEEEEEEECCCCEEEEEECCCCCC--CCCCEEEE
T ss_conf 3-------1176977788999999-999999998706-----6072224555616996799997174206--65413210
Q ss_pred CCCCCHHHHHHHHHCCC
Q ss_conf 65441156665420133
Q gi|254780206|r 295 LESDILEILNSCVHGNL 311 (424)
Q Consensus 295 L~~dl~~il~~~~~g~L 311 (424)
+.-||+.+.-+++-|+.
T Consensus 873 ~Gipl~~~A~~~~~G~~ 889 (1089)
T TIGR01369 873 TGIPLAKLAVRVMLGKK 889 (1089)
T ss_pred CCCCHHHHHHHHHHCCC
T ss_conf 37887999999970882
No 12
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=5.6e-35 Score=272.77 Aligned_cols=297 Identities=22% Similarity=0.319 Sum_probs=220.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEE---CCCHHHHHCCEEEECC-CCC---HHHHHHHHHHHCCCEEEECCC--
Q ss_conf 9589988658899999999858996789995---4983575117055128-789---899999998718979999795--
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSI---PGNPGIAQHAQCVAID-IQN---HSAIIHFCQEKHIDLVVVGPE-- 71 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~---pgN~g~~~~~~~~~i~-~~d---~~~i~~~a~~~~iDlvivgpE-- 71 (424)
|||||.|.|+|.+ ++++|+++..-.+|+.+ |.+||+....+.+.+. ..| .+.++++|++++||+++|+.|
T Consensus 2 ~nILvt~~G~~~~-ii~~lk~~~~~~~Vi~~D~~~~a~~~~~aD~~y~~P~~~d~~y~~~ll~i~~~~~id~iiP~~d~E 80 (325)
T PRK12767 2 MNILVTSAGRRVQ-LVKALKKSLLGGKVIGADISPLAPALYFADKFYVVPKVTDPNYIDALLDICKKENIDALIPLIDPE 80 (325)
T ss_pred CEEEEECCCCHHH-HHHHHHHCCCCCEEEEECCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCHH
T ss_conf 4899986786899-999999769985999968998995344548899878889878999999999987999999778502
Q ss_pred HHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHCCCCEEEEEECCCCCC
Q ss_conf 578748998986058806701066655520102357888765310111122344011111-2101242025630465343
Q gi|254780206|r 72 LPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQ-YVQNKSMPIVVKADGLCAG 150 (424)
Q Consensus 72 ~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~-~~~~~g~PvVVKp~~~agG 150 (424)
.++.+...+.|++.|+.+++|+.++.++..||..++++|+++|||+|++..+++.+++.+ +.++++||+||||...+||
T Consensus 81 l~~la~~~~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~fP~vvKP~~g~gs 160 (325)
T PRK12767 81 LPLLAQHRDEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGINTPKSYLPEDLEDLLKALAEELGFPLIVKPRDGSGS 160 (325)
T ss_pred HHHHHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 66899999999967998956979999985499999999997599989820558999999999865699669853567887
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 00023235677888788751445317778877520575234421577-63103520001113566544444344300001
Q gi|254780206|r 151 KGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGK-TAIPFTTARDHKRIHDGDIGPNTGGMGACSPA 229 (424)
Q Consensus 151 kGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~-~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~ 229 (424)
+|+.++++.+|+..++.. ...+++||||+|.|+++++++|.+ +++... .+ +|..- .+|.. ++.
T Consensus 161 ~Gv~~i~~~~el~~~~~~-----~~~~ivqe~i~G~E~tvdv~~d~~g~~~~~~-~~--~r~~~------~~G~~--~~~ 224 (325)
T PRK12767 161 IGVFKVNNREELEFLLRY-----NPNLIIQEFIEGQEYTVDVLCDLNGEVISIV-PR--KRIEV------RAGET--SKG 224 (325)
T ss_pred CCEEEECCHHHHHHHHHH-----CCCEEEEECCCCCEEEEEEEEECCCCEEEEE-EE--EECCC------CCCCC--CCC
T ss_conf 754997999999999974-----8974987034898899999997899999999-98--73364------45786--775
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 23443222010000089999986204623566445448985570489998865147751044332654411566654201
Q gi|254780206|r 230 LGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHG 309 (424)
Q Consensus 230 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g 309 (424)
..... .++ .+..++++++| + ++|++.+|+++++++||++|+|+|||-- -.+--.-.-|+.+++.+..-|
T Consensus 225 ~~~~~---~~l-~~~~~~i~~~l---~--~~G~~~vq~~~~~g~~~iiEiNPRf~g~--~~l~~~aG~n~p~~~~~~~lg 293 (325)
T PRK12767 225 VTVKN---PEL-FKLAERIAEKL---G--ARGPLNIQCFVVDGEPYLFEINPRFGGG--YPLRAMAGFNEPDILIRNLLG 293 (325)
T ss_pred EECCH---HHH-HHHHHHHHHHC---C--CCCEEEEEEEEECCEEEEEEEECCCCCC--HHHHHHHCCCHHHHHHHHHCC
T ss_conf 30579---999-99999999981---9--8545999999989969999997887864--673988398999999999849
Q ss_pred CCC-CCCCCCCCCCEEE
Q ss_conf 333-3212344442067
Q gi|254780206|r 310 NLH-NTHINWKAEYALT 325 (424)
Q Consensus 310 ~L~-~~~~~~~~~~~v~ 325 (424)
.-. .....|+++..+-
T Consensus 294 ~~~~~~~~~~~~g~~~~ 310 (325)
T PRK12767 294 GENIPIIGEYKEGLYMR 310 (325)
T ss_pred CCCCCCCCCCCCCEEEE
T ss_conf 99898755435782899
No 13
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.5e-33 Score=262.52 Aligned_cols=372 Identities=16% Similarity=0.145 Sum_probs=254.5
Q ss_pred HHHHHHHCCCCCEEEEECCCH----HHHHC-CEEEECCCCCHHHHHHHHHHHC-CCEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 999998589967899954983----57511-7055128789899999998718-97999979557874899898605880
Q gi|254780206|r 15 LAWKIAQSPLLSELWSIPGNP----GIAQH-AQCVAIDIQNHSAIIHFCQEKH-IDLVVVGPELPLVNGISDALNAAGFK 88 (424)
Q Consensus 15 l~~~l~~s~~~~~v~~~pgN~----g~~~~-~~~~~i~~~d~~~i~~~a~~~~-iDlvivgpE~pL~~gi~d~l~~~gi~ 88 (424)
++-+..+.... +.++.-.+| +.... .+.+.+|+.|.+++...+.+.. |..|+...|-.+. -.+...+..|+|
T Consensus 18 l~lk~A~~lG~-~pv~LT~dP~rY~~L~~~~~evI~vDT~d~dal~~~v~~~~~IaGV~s~sDyyl~-~AA~LA~~LGLP 95 (892)
T PRK02186 18 LLLRKALLRGF-TPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSEYFIE-VASEVARRLGLP 95 (892)
T ss_pred HHHHHHHHCCC-EEEEEECCHHHCHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCHHHHH-HHHHHHHHHCCC
T ss_conf 99999997498-5589836834352467517659993699999999997423685269874054499-999999981989
Q ss_pred EEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 67010666555201023578887653101111223440111112101242025630465343000232356778887887
Q gi|254780206|r 89 VFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDR 168 (424)
Q Consensus 89 v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~ 168 (424)
||+.++.+.+.||..+|+.+.++|+|.|.|..+++.+++..++.++|||+||||...+||.||.+|.|.+|+.++...
T Consensus 96 --Gp~peAV~~cRdK~~~Rq~L~~aGVp~P~~~lv~~~~e~~~aAa~IGfPvVVKP~dgSGS~GVrLc~s~aEL~e~~~~ 173 (892)
T PRK02186 96 --AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALDAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAA 173 (892)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHH
T ss_conf --989999999871999999999669999956883588789999984799989716888877685876899999999999
Q ss_pred HHCCCCHHHHHHHHHHCCCCCEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHH
Q ss_conf 514453177788775205752344215-7763103520001113566544444344300001234432220100000899
Q gi|254780206|r 169 CFQQINSTVIIEEYLEGFEVSFFALCD-GKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILP 247 (424)
Q Consensus 169 ~~~~~~~~VliEefl~G~E~Sv~~i~d-G~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~ 247 (424)
..+.....||||||++|+|||++.++. |++.+ +.+++ |++... |--=-.|...|.| + .+...++|.+-
T Consensus 174 l~~~r~~~vLVEEFieGpEYSVEt~s~~G~~~V-IGIT~--K~l~~~---P~FVE~GH~fPAp-L----~~~~~~~I~d~ 242 (892)
T PRK02186 174 LRRAGTRAALVQAYVEGDEYSVETLTVARGHQV-LGITR--KHLGPP---PHFVEIGHDFPAP-L----SAPQRERIVRT 242 (892)
T ss_pred HHHCCCCCEEEEECCCCCEEEEEEEEECCCEEE-EEEEE--EECCCC---CEEEEECCCCCCC-C----CHHHHHHHHHH
T ss_conf 971548866999715688789999997796799-99986--533899---7178706767899-9----85899999999
Q ss_pred HHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEE-CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 999862046235664454489855704899988651-4775104433265441156665420133332123444420675
Q gi|254780206|r 248 TIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRF-GDPECQAMMMRLESDILEILNSCVHGNLHNTHINWKAEYALTV 326 (424)
Q Consensus 248 ~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~-GDPE~q~ilp~L~~dl~~il~~~~~g~L~~~~~~~~~~~~v~V 326 (424)
+..+|...|+. +|+-++++++|++||+|||+|.|+ |+.--|.+=.-..-||++++...--|.-..+...-+--.++-.
T Consensus 243 v~raL~AlGl~-~GpAHTEvklT~~GPvVIEINPRLAGGmIP~Lve~A~GvDll~~~~~~~~g~~~~~~~~~~~~~ai~f 321 (892)
T PRK02186 243 VLRALDAVGYA-FGPAHTELRVRGDTVVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDLHLGVAAFADPTAKRYGAIRF 321 (892)
T ss_pred HHHHHHHCCCC-CCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 99999970866-68832899993897389997885446765899988718418999999863877778975001231689
Q ss_pred EECCCCCCCCCCCCCCCCCCCC--CCCCCEEEEEEEEEECCEEEECC---CCEEEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 4225446687757976248766--68986899833587788799818---807999996289899999999998525899
Q gi|254780206|r 327 VVATKGYPEEYPHGTIISKIPQ--NTGTTQLFHAGTAIVNNNLTANG---GRVLSATALGKTITESRELAYHMVENIDWK 401 (424)
Q Consensus 327 vlas~GYP~~~~kg~~I~~l~~--~~~~~~ifhagt~~~~g~l~t~G---GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~ 401 (424)
++..-+- .++. +..++. +..-..-++-+.+..++.+.-.| .|+-.|++.|++.+.+-.-+.+.+..+
T Consensus 322 ~~p~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gdf~dr~~~vi~~~~~~~~~~~~~~~~~~~l--- 393 (892)
T PRK02186 322 VLPARSG--VLRG---PLALPADRAARPELRHFHPIKQPGDALRLEGDFRDRIAAVVCAGDHRDSVAAAAERAVAGL--- 393 (892)
T ss_pred EECCCCC--CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH---
T ss_conf 8456555--2046---6567410136753102466589986424477766543633103788778998888776676---
Q ss_pred CCEECCHHHHHHH
Q ss_conf 9575351789887
Q gi|254780206|r 402 HGYWREDIGLQKK 414 (424)
Q Consensus 402 g~~yR~DIG~~~~ 414 (424)
|.||+.+..
T Consensus 394 ----~~~i~~~~~ 402 (892)
T PRK02186 394 ----SIDIGDAAR 402 (892)
T ss_pred ----HHHHCCCCC
T ss_conf ----443122444
No 14
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.9e-32 Score=253.18 Aligned_cols=284 Identities=19% Similarity=0.347 Sum_probs=222.0
Q ss_pred EEEEECCC------HHH------HHHHHHHHHCCCCCEEEEECCCHHHHH----CCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 58998865------889------999999985899678999549835751----17055128789899999998718979
Q gi|254780206|r 2 RVLLIGSG------GRE------HALAWKIAQSPLLSELWSIPGNPGIAQ----HAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsG------grE------hAl~~~l~~s~~~~~v~~~pgN~g~~~----~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
||+||||| |-| || +|+|++... +..+.+-||.|.. .++..++++...|.++++++.++++.
T Consensus 556 kvliLGsGP~RIGqgiEFDYc~vha-~~aLr~~G~--etImiN~NPETVSTDyD~sDrLYFEPlt~E~V~~I~~~E~p~g 632 (1068)
T PRK12815 556 KVLILGSGPIRIGQGIEFDYMCVHA-AFALKKEGY--ETIMINNNPETVSTDYDTADRLYFEPITLEDILNVAEAENIKG 632 (1068)
T ss_pred EEEEECCCCCEECCCCCCHHHHHHH-HHHHHHCCC--EEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCE
T ss_conf 4999567871422442400258999-999996897--4899627843123674557735753687999999999858997
Q ss_pred EEE--CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 999--795578748998986058806701066655520102357888765310111122344011111210124202563
Q gi|254780206|r 66 VVV--GPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK 143 (424)
Q Consensus 66 viv--gpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVK 143 (424)
|++ |-..|| .++..|++.|++++|.+.++..+.-|+...+++|.+.|||.|++..++|.++|.++++++|||++|+
T Consensus 633 VivqfGGQt~l--nla~~L~~~gv~IlGts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~~~ea~~~a~~iGyPvlvR 710 (1068)
T PRK12815 633 VIVQFGGQTAI--NLAKPLEEAGLPILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATSEEEALAFAKRIGYPVLIR 710 (1068)
T ss_pred EEEECCCCCHH--HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEEC
T ss_conf 99964882367--9999999769949827868864241399999999973899999635456679999998649977842
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC-C--CCCCCCCCCCC
Q ss_conf 04653430002323567788878875144531777887752057523442157763103520001-1--13566544444
Q gi|254780206|r 144 ADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDH-K--RIHDGDIGPNT 220 (424)
Q Consensus 144 p~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dy-K--r~~~~d~GpnT 220 (424)
|+..-||+++.+++|.+|+..++.++.. ..++|+|++||+|.|+.|++++||+++++..+. +| . -++.||.
T Consensus 711 PSyvLgG~~m~iv~~~~eL~~y~~~a~~-~~~pvlIdkfl~g~E~evDai~Dg~~v~I~gIm-EHIE~AGVHSGDS---- 784 (1068)
T PRK12815 711 PSYVIGGQGMAVVYDEPALEAYLEENVQ-QLYPILIDQFIDGKEYEVDAISDGEDVTIPGII-EHIEQAGVHSGDS---- 784 (1068)
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHCC-CCCCEEEEECCCCCEEEEEEEECCCCEEEEEEE-ECHHHCCCCCCCC----
T ss_conf 4433577423897599999999985157-888556230005404688999649955999964-2113146656885----
Q ss_pred CCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECC----C
Q ss_conf 344300001234432220100000899999862046235664454489855704899988651477510443326----5
Q gi|254780206|r 221 GGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRL----E 296 (424)
Q Consensus 221 GGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L----~ 296 (424)
-++.|+..++++..+++ +++..+..++| + .+|.+.+||.+.++..||||.|.|-+- -+|.+ .
T Consensus 785 ---~~v~Pp~~Ls~~~~~~i-~~~t~kia~~L---~--v~Gl~NiQfavk~~~vyVIEvNpRASR-----TvPFvSKatG 850 (1068)
T PRK12815 785 ---IAVLPPQSLSPEQQAKI-RDQAIKIAKKL---G--FRGIMNIQFLLAGDEIYVLEVNPRASR-----TVPFVSKATG 850 (1068)
T ss_pred ---EEEECCCCCCHHHHHHH-HHHHHHHHHHC---E--EECCEEEEEEEECCEEEEEEEECCCCC-----CHHHHHHHCC
T ss_conf ---48838987899999999-99999999648---3--545126999997998999996187554-----3266787329
Q ss_pred CCCHHHHHHHHHCC
Q ss_conf 44115666542013
Q gi|254780206|r 297 SDILEILNSCVHGN 310 (424)
Q Consensus 297 ~dl~~il~~~~~g~ 310 (424)
-||+.+--.++-|+
T Consensus 851 ~pl~~iAtkvmlG~ 864 (1068)
T PRK12815 851 VPLAKLATKVLLGK 864 (1068)
T ss_pred CCHHHHHHHHHCCC
T ss_conf 88999999998499
No 15
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.4e-31 Score=248.24 Aligned_cols=286 Identities=20% Similarity=0.351 Sum_probs=219.1
Q ss_pred EEEEECCC------HHH------HHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 58998865------889------99999998589967899954983575----117055128789899999998718979
Q gi|254780206|r 2 RVLLIGSG------GRE------HALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsG------grE------hAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
|||||||| |-| || +|+|++... +..+.+-||.|. ..++..++++...|.+.++++.++++.
T Consensus 555 kvlvlGsGp~rIGqgiEFDY~~v~a-~~alk~~G~--~~imIN~NPETVSTD~d~sDrLYFEplt~E~V~~I~~~E~p~g 631 (1063)
T PRK05294 555 KVMILGGGPNRIGQGIEFDYCCVHA-ALALREAGY--ETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKG 631 (1063)
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHH-HHHHHHCCC--EEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCE
T ss_conf 3799657773204442300679999-999996598--1589537811111565667614543688999999999758987
Q ss_pred EEE--CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 999--795578748998986058806701066655520102357888765310111122344011111210124202563
Q gi|254780206|r 66 VVV--GPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK 143 (424)
Q Consensus 66 viv--gpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVK 143 (424)
|++ |-..|+ .++..|++.|++++|.+.++..+.-|+...+++|.+.|||+|++..++|.++|+++++++|||++|+
T Consensus 632 vi~qfGGQt~~--nla~~L~~~g~~ilGts~~~Id~aEDR~~F~~~l~~l~i~qp~~~~a~s~~ea~~~a~~iGyPvlvR 709 (1063)
T PRK05294 632 VIVQFGGQTPL--KLAKALEAAGVPILGTSPDAIDLAEDRERFQKLLEKLGIKQPPNGTATSVEEALEIAEEIGYPVLVR 709 (1063)
T ss_pred EEEECCCCCHH--HHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEEC
T ss_conf 99973883678--9999999879947778878878787588899999865999999707668999999998649866843
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHC-CCCCEEEECCCCCCCCCCCCCCCC--CCCCCCCCCC
Q ss_conf 0465343000232356778887887514-45317778877520-575234421577631035200011--1356654444
Q gi|254780206|r 144 ADGLCAGKGVVVAATVDEATSAIDRCFQ-QINSTVIIEEYLEG-FEVSFFALCDGKTAIPFTTARDHK--RIHDGDIGPN 219 (424)
Q Consensus 144 p~~~agGkGV~i~~~~~e~~~~~~~~~~-~~~~~VliEefl~G-~E~Sv~~i~dG~~~~~l~~~~dyK--r~~~~d~Gpn 219 (424)
|+...||+|+.+++|.+|+..++.+++. +..++|||++||+| .|+-+++++||+++++..+.+--. -++.||.
T Consensus 710 PSyVLGG~~M~iv~~~~eL~~yl~~a~~vs~~~pvlIdkfl~ga~E~eVDai~Dg~~v~I~gImEHIE~AGVHSGDS--- 786 (1063)
T PRK05294 710 PSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDRFLEDAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDS--- 786 (1063)
T ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEHHHHHCHHHHHHEEECCCEEEEEEEEEECCCCCCCCCCC---
T ss_conf 43102577147856999999999999863899977863543202454430231488489999872001457566784---
Q ss_pred CCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECC----
Q ss_conf 4344300001234432220100000899999862046235664454489855704899988651477510443326----
Q gi|254780206|r 220 TGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRL---- 295 (424)
Q Consensus 220 TGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L---- 295 (424)
-++.|+-.++++..+++ +++.....++| + .+|.+.+||++.++..||||.|.|-.- -+|.+
T Consensus 787 ----~~V~Pp~~Ls~~~~~~i-~~~t~~ia~~l---~--v~G~~NiQf~vk~~~vyVIE~NpRaSR-----tvPfvSKat 851 (1063)
T PRK05294 787 ----ACSLPPYTLSEEIIDEI-REQTKKLALEL---N--VVGLMNVQFAVKDDEVYVIEVNPRASR-----TVPFVSKAT 851 (1063)
T ss_pred ----EEEECCCCCCHHHHHHH-HHHHHHHHHHC---C--CCCCCEEEEEECCCEEEEEEECCCCCC-----CCHHHHHHC
T ss_conf ----28816855899999999-99999999855---6--666420335540983899994474445-----304457641
Q ss_pred CCCCHHHHHHHHHCC
Q ss_conf 544115666542013
Q gi|254780206|r 296 ESDILEILNSCVHGN 310 (424)
Q Consensus 296 ~~dl~~il~~~~~g~ 310 (424)
.-||+.+--.++-|+
T Consensus 852 g~pl~~iAtk~~lG~ 866 (1063)
T PRK05294 852 GVPLAKIAARVMLGK 866 (1063)
T ss_pred CCCHHHHHHHHHCCC
T ss_conf 997999999998299
No 16
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=3.4e-29 Score=231.00 Aligned_cols=381 Identities=18% Similarity=0.250 Sum_probs=254.6
Q ss_pred EEEEECCC------HHH------HHHHHHHHHCCCCCEEEEECCCHHHHH----CCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 58998865------889------999999985899678999549835751----17055128789899999998718979
Q gi|254780206|r 2 RVLLIGSG------GRE------HALAWKIAQSPLLSELWSIPGNPGIAQ----HAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsG------grE------hAl~~~l~~s~~~~~v~~~pgN~g~~~----~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
|||||||| |-| || +++|++... ++.+.+-||.|.. .++.+++.+...+.+.+++++++||.
T Consensus 9 kvLviGsGp~~IGqa~EfDysg~qa-~~al~e~g~--~vilvN~NpaTv~Td~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~ 85 (1063)
T PRK05294 9 KILIIGSGPIVIGQACEFDYSGTQA-CKALREEGY--RVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDA 85 (1063)
T ss_pred EEEEECCCCCHHCCHHHHHHHHHHH-HHHHHHCCC--EEEEECCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCE
T ss_conf 8999898825103723326569999-999998699--8999879854410787766437872798999999999759997
Q ss_pred EEE--CCCHHHHH--HHHH--HHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 999--79557874--8998--98605880670106665552010235788876531011112234401111121012420
Q gi|254780206|r 66 VVV--GPELPLVN--GISD--ALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP 139 (424)
Q Consensus 66 viv--gpE~pL~~--gi~d--~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P 139 (424)
+++ |...+|.. .+.+ .|++.|++++|.+.++.++.-|+...+++|++.|+|+|++..+++.++|.++++++|||
T Consensus 86 il~~~GGQtaLnla~~L~~~GiL~~~~v~lLGt~~~~I~~aedR~~F~~~l~~i~~p~~~s~~~~s~~ea~~~a~~igyP 165 (1063)
T PRK05294 86 ILPTMGGQTALNLALELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHTMEEALEVAEEIGYP 165 (1063)
T ss_pred EEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHCCCC
T ss_conf 88667780599999999975967764972756999999977789999999997699999725309999999999865998
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHCC-CCCEEEECCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 2563046534300023235677888788751445-3177788775205-752344215776-310352000111356654
Q gi|254780206|r 140 IVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-NSTVIIEEYLEGF-EVSFFALCDGKT-AIPFTTARDHKRIHDGDI 216 (424)
Q Consensus 140 vVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-~~~VliEefl~G~-E~Sv~~i~dG~~-~~~l~~~~dyKr~~~~d~ 216 (424)
++|+|+...||+|..+++|.+|+.+++..+|..+ .++|+||++|.|. |+.++++.|++. .+......+.. ..
T Consensus 166 vivRps~~LGG~g~~i~~n~~eL~~~~~~~~~~S~~~qvLie~sl~gwkEie~ev~rD~~~n~i~v~~mEnid-----p~ 240 (1063)
T PRK05294 166 VIIRPSFTLGGTGGGIAYNREELEEIVERGLDLSPTTEVLIEESLLGWKEYEMEVMRDKADNCIIVCSIENID-----PM 240 (1063)
T ss_pred EEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEEEEECCCCEEEEEEECCCC-----CC
T ss_conf 8998442167876404349999999999999619998689661117988999999981899989995411354-----56
Q ss_pred CCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC--CEEEEEEEEEEECCCCCEEEEEC
Q ss_conf 4444344300001234432220100000899999862046235664454489855--70489998865147751044332
Q gi|254780206|r 217 GPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE--QGPYLIEYNVRFGDPECQAMMMR 294 (424)
Q Consensus 217 GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~--~gp~viE~N~R~GDPE~q~ilp~ 294 (424)
|-+||-=-+++|+-.++++..+++ +....+++++| |+- +|.+.+||-+.. +.-||||+|+|+.-- -++...
T Consensus 241 GIHtGDSi~vaP~qTL~d~e~q~l-R~~a~kI~~~L---~iv-~G~~NiQfA~~p~~~~~~VIEvNPR~SRs--salaSK 313 (1063)
T PRK05294 241 GVHTGDSITVAPAQTLTDKEYQML-RDASIAILREI---GVE-TGGSNVQFAVNPKDGRYVVIEMNPRVSRS--SALASK 313 (1063)
T ss_pred CCCCCCCCEECCCCCCCHHHHHHH-HHHHHHHHHHC---CCC-CCCEEEEEEECCCCCCEEEEECCCCCCCC--HHHHHH
T ss_conf 456667253568865898999999-99999999982---957-36447999874899848999637750010--688888
Q ss_pred CCC-CCHHHHHHHHHCC-CCCCCCCCCCCCEEEEEECCCCCCC-CCC-CCCCCCCCCCCCCCCEEEEEEEEEECCEEEEC
Q ss_conf 654-4115666542013-3332123444420675422544668-775-79762487666898689983358778879981
Q gi|254780206|r 295 LES-DILEILNSCVHGN-LHNTHINWKAEYALTVVVATKGYPE-EYP-HGTIISKIPQNTGTTQLFHAGTAIVNNNLTAN 370 (424)
Q Consensus 295 L~~-dl~~il~~~~~g~-L~~~~~~~~~~~~v~Vvlas~GYP~-~~~-kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~ 370 (424)
-.. ++..+.-.++-|. |+++.-......+ |+-- |. .|. .-.+.+.+++-.... .+=|| ...+
T Consensus 314 aTGyPiA~vaaklalG~~L~ei~n~vT~~t~-----A~fE-P~ldyv~vK~p~~~f~kf~~~~--~~Lg~-----~mks- 379 (1063)
T PRK05294 314 ATGYPIAKVAAKLAVGYTLDEIKNDITGKTP-----ASFE-PSIDYVVTKIPRFAFEKFPGAD--RRLTT-----QMKS- 379 (1063)
T ss_pred HHCCCHHHHHHHHHHCCCHHHHCCCCCCCCC-----CCCC-CCCCEEEEEECCCCCCCCCCCC--HHHCC-----CCCC-
T ss_conf 7388789999998717975783676446631-----4447-7566599970477710035854--43243-----0113-
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHH
Q ss_conf 880799999628989999999999852589995753517898875
Q gi|254780206|r 371 GGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKE 415 (424)
Q Consensus 371 GGRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~~~~~ 415 (424)
+-.|.+.|.|+++|..+|.+.++ +.+.+...........+.
T Consensus 380 ---~Gevm~igr~feea~~KAirSle-~~~~gl~~~~~~~~eel~ 420 (1063)
T PRK05294 380 ---VGEVMAIGRTFEESLQKALRSLE-IGLTGLDEKEDLALEEIR 420 (1063)
T ss_pred ---CCHHHHHCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHH
T ss_conf ---41022222328999999998442-586677777778999999
No 17
>PRK07206 hypothetical protein; Provisional
Probab=99.97 E-value=8.9e-30 Score=235.19 Aligned_cols=373 Identities=19% Similarity=0.226 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHCCC-CCEEEEECCCHHHHHC--CEE---EECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 889999999985899-6789995498357511--705---5128789899999998718979999795578748998986
Q gi|254780206|r 10 GREHALAWKIAQSPL-LSELWSIPGNPGIAQH--AQC---VAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALN 83 (424)
Q Consensus 10 grEhAl~~~l~~s~~-~~~v~~~pgN~g~~~~--~~~---~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~ 83 (424)
|+- |+.++++-.. +-.|+..+.-|.+... ... ......|.+++++..++.+|+.||+|.|.-. -++|.|.
T Consensus 14 G~~--la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~aVi~g~E~gV--~lAd~La 89 (415)
T PRK07206 14 GKF--LAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQQRIIKHIDETIEFLRQLGPDAVIAGAESGV--ELADRLA 89 (415)
T ss_pred HHH--HHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCHHHH--HHHHHHH
T ss_conf 879--999999739828999837988435442324343433210578999999998629729997855659--9999999
Q ss_pred H-CCCCE-EECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC---CCCEEEEEECCCCCCCCCCCHHH
Q ss_conf 0-58806-7010666555201023578887653101111223440111112101---24202563046534300023235
Q gi|254780206|r 84 A-AGFKV-FGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQN---KSMPIVVKADGLCAGKGVVVAAT 158 (424)
Q Consensus 84 ~-~gi~v-~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~---~g~PvVVKp~~~agGkGV~i~~~ 158 (424)
+ .|+|. -+|....++ +||..||+.++++|||+|++..+++.+|+..++++ ++||+||||...+|+.||++|.|
T Consensus 90 ~~LgLp~~N~~~~~~aR--RdK~~m~~~L~~aGl~~~~~~~~~~~~e~~~~~~~~~~~~~PvVvKP~~gagS~gV~~c~~ 167 (415)
T PRK07206 90 ERLGLCYANAPALSSAR--RNKYEMINALANAGLPAIRQIDTADWEEASAWIRVNNLWDSPVVIKPLESAGSDGVFFCPD 167 (415)
T ss_pred HHHCCCCCCCHHHHHHH--CCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECC
T ss_conf 98689989955688774--5999999999975998553885299999999998605579998995899998799899799
Q ss_pred HHHHHHHHHHHHCC------CCHHHHHHHHHHCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 67788878875144------531777887752057523442-15776310352000111356654444434430000123
Q gi|254780206|r 159 VDEATSAIDRCFQQ------INSTVIIEEYLEGFEVSFFAL-CDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALG 231 (424)
Q Consensus 159 ~~e~~~~~~~~~~~------~~~~VliEefl~G~E~Sv~~i-~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~ 231 (424)
.+|+.++++.+.+. .+..+|+||||+|+|+||.++ .||++++.- ..+-+|...+ .++..-......|
T Consensus 168 ~~el~~a~~~i~~~~n~~g~~~~~vLveEyl~G~EysVe~vs~~G~h~v~~-i~~y~k~~~~--~~~~~~~~~~~~p--- 241 (415)
T PRK07206 168 KQDAYHAFNAILGKANKLGLVNESVLVQEFLIGTEYVVNTVSINGNHLVTE-IVRYHKTSLN--RGSVVYDYDELLP--- 241 (415)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEE-EEEECCCCCC--CCCEEEECCEECC---
T ss_conf 999999999985665435786753887541468578999998789689999-9997255689--9865653203569---
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEE-CCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 4432220100000899999862046235664454489855704899988651-477510443326544115666542013
Q gi|254780206|r 232 MSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRF-GDPECQAMMMRLESDILEILNSCVHGN 310 (424)
Q Consensus 232 ~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~-GDPE~q~ilp~L~~dl~~il~~~~~g~ 310 (424)
. .....+++++-+.+++++.|+.+ |+.|+++|+|++||++||+|+|+ |++-.+.+-.....|.+++...+.-+.
T Consensus 242 --~--~~~~~~~l~~y~~~~l~ALGi~~-G~~H~Ev~lt~~gp~liE~~~R~~G~~~~~~~~~~~g~~~~~~~v~~~l~~ 316 (415)
T PRK07206 242 --C--TSPEYQELVDYTKKALDALGIKN-GPAHAEIMLTSDGPVLIETGARLDGGLHPDAARVATGFSQLDLTAQSLADP 316 (415)
T ss_pred --C--CHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEECCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf --9--84899999999999999838775-772189998289828999678778986478998705879999999985093
Q ss_pred --CCCCCCCCC-CCCEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCEEEE-EEEEEE-CCEEEECCCCEEEEEEECCC
Q ss_conf --333212344-442067542254--46687757976248766689868998-335877-88799818807999996289
Q gi|254780206|r 311 --LHNTHINWK-AEYALTVVVATK--GYPEEYPHGTIISKIPQNTGTTQLFH-AGTAIV-NNNLTANGGRVLSATALGKT 383 (424)
Q Consensus 311 --L~~~~~~~~-~~~~v~Vvlas~--GYP~~~~kg~~I~~l~~~~~~~~ifh-agt~~~-~g~l~t~GGRVL~vv~~g~~ 383 (424)
........+ +.++++|.|.|. |-=....--..|..++.- .+..++. .|-... --.+.|.-|.| .=..++
T Consensus 317 ~~~~~~~~~y~~~~~~~~v~Lis~~~G~l~~~~gl~~i~~Lpsf-~~~~~~~~~G~~v~~T~Dl~s~pG~v---~L~~~d 392 (415)
T PRK07206 317 DRFRETRESYKLQAHSLNVFLISQAAGVISGKHFLRELQKLPSF-KKSVYYVNEGDNVKVTVDLFSQPGIV---YLVHSD 392 (415)
T ss_pred HHCCCCCCCCCCCCEEEEEEEECCCCCEEECCHHHHHHHHCCCE-EEEEEECCCCCCCCCCCCCCCCCEEE---EEECCC
T ss_conf 11046788766443489999853999358577269999838875-37999669979808876678998799---997699
Q ss_pred HHHHHHHHHHHHHCCCCCCCE
Q ss_conf 899999999998525899957
Q gi|254780206|r 384 ITESRELAYHMVENIDWKHGY 404 (424)
Q Consensus 384 l~eA~~~ay~~i~~I~~~g~~ 404 (424)
.+..++-|+.+..++-+|.|
T Consensus 393 -~~~l~~D~~~iR~le~~g~~ 412 (415)
T PRK07206 393 -KEQLEQDYRKIRKMESDGFF 412 (415)
T ss_pred -HHHHHHHHHHHHHHHHCCCE
T ss_conf -99999999999998645865
No 18
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=99.97 E-value=1.9e-30 Score=240.09 Aligned_cols=99 Identities=63% Similarity=1.026 Sum_probs=97.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHH
Q ss_conf 58998865889999999985899678999549835751170551287898999999987189799997955787489989
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDA 81 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~ 81 (424)
||||||||||||||+|+|++|+.+.++||+||||||+.+++++.++.+|++.+++||++++||+||||||+||++|++|.
T Consensus 1 kILvIGsGgREHAi~~~l~~s~~~~~l~~~pgN~gi~~~~~~~~i~~~d~~~i~~~~~~~~idlviiGPE~pL~~Gl~D~ 80 (99)
T pfam02844 1 KVLVVGSGGREHALAWKLAQSPRVEKVYVAPGNPGTAQLAKNVNIDITDFEALADFAKEENIDLVVVGPEAPLVAGIVDA 80 (99)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf 98998788799999999964999776999589815777475014584479999999998197499989606778788999
Q ss_pred HHHCCCCEEECCHHHHHHH
Q ss_conf 8605880670106665552
Q gi|254780206|r 82 LNAAGFKVFGPSQRAAKLE 100 (424)
Q Consensus 82 l~~~gi~v~Gp~~~aa~le 100 (424)
|++.||+||||++++||||
T Consensus 81 l~~~gi~vfGP~k~aA~LE 99 (99)
T pfam02844 81 LRAAGIPVFGPSKAAARLE 99 (99)
T ss_pred HHHCCCEEECCCHHHHHCC
T ss_conf 9868991799286887367
No 19
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.97 E-value=5.7e-28 Score=222.14 Aligned_cols=360 Identities=23% Similarity=0.354 Sum_probs=253.4
Q ss_pred EEEEECCC--HHHHHHHHHHHHCCCCCEEEEEC---CCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 58998865--88999999998589967899954---98357511705512878989999999871897999979557874
Q gi|254780206|r 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSIP---GNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 2 kILviGsG--grEhAl~~~l~~s~~~~~v~~~p---gN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
|||++||| |+|-||. +++-. + +|+... +-|.|.-....+.||+.|.+++...++++++|++|+--|+--.+
T Consensus 14 kvmLLGSGELGKEvaIe--~QRLG-~-eVIAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~re~Pd~IVpEiEAI~td 89 (394)
T COG0027 14 KVMLLGSGELGKEVAIE--AQRLG-V-EVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAIATD 89 (394)
T ss_pred EEEEECCCCCCHHHHHH--HHHCC-C-EEEEECCCCCCHHHHHHHHEEEEECCCHHHHHHHHHHHCCCEEEEHHHHHHHH
T ss_conf 89996388644699998--88638-7-79996376898066421111345456999999999865898133135666478
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHH-HHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCC
Q ss_conf 8998986058806701066655520102357888-765310111122344011111210124202563046534300023
Q gi|254780206|r 77 GISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC-TKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVV 155 (424)
Q Consensus 77 gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l-~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i 155 (424)
.+ ..|++.|+.|+ |+++|+++..++.--|++. ++.|+||++|..+++.++..+.++++||||||||..+++|||.++
T Consensus 90 ~L-~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsv 167 (394)
T COG0027 90 AL-VELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSV 167 (394)
T ss_pred HH-HHHHHCCCEEC-CCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCEE
T ss_conf 89-99986796675-53277773426898999889972999766321355999999999749970213320268898214
Q ss_pred HHHHHHHHHHHHHHHCC---CCHHHHHHHHHHC-CCCCEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 23567788878875144---5317778877520-575234421--57763103520001113566544444344300001
Q gi|254780206|r 156 AATVDEATSAIDRCFQQ---INSTVIIEEYLEG-FEVSFFALC--DGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPA 229 (424)
Q Consensus 156 ~~~~~e~~~~~~~~~~~---~~~~VliEefl~G-~E~Sv~~i~--dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~ 229 (424)
+.+.++..++++++... .+.+|++|+|++- .|+++..++ ||.+..+-|+- | |--|+|- --+|.|.
T Consensus 168 v~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EITlLtvr~~~~~~~Fc~PIG--H-rq~dgdY------~ESWQP~ 238 (394)
T COG0027 168 VRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPIG--H-RQEDGDY------RESWQPQ 238 (394)
T ss_pred ECCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEEEEECCCCCCCCCCC--C-CCCCCCH------HCCCCCC
T ss_conf 35987889999999754788887189998732327999999997558877677766--4-0578870------1036841
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHH--HHHHHH
Q ss_conf 234432220100000899999862046235664454489855704899988651477510443326544115--666542
Q gi|254780206|r 230 LGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILE--ILNSCV 307 (424)
Q Consensus 230 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~--il~~~~ 307 (424)
. +++...++. +.|-+.+.++|- -+|++.++++++.+..+.=|+..|.-|--.-++ +..||-+ +-..++
T Consensus 239 ~-mS~~al~~A-~~IA~~vt~aLG-----G~GlFGVElfv~gDeV~FsEVSPRPHDTGmVTL---iSq~lsEF~LH~RAi 308 (394)
T COG0027 239 E-MSEAALEEA-QSIAKRVTDALG-----GRGLFGVELFVKGDEVIFSEVSPRPHDTGMVTL---ISQDLSEFALHVRAI 308 (394)
T ss_pred C-CCHHHHHHH-HHHHHHHHHHHC-----CCCCEEEEEEEECCEEEEEECCCCCCCCCEEEE---EECCCHHHHHHHHHH
T ss_conf 0-389999999-999999998605-----863036899972887898525789888724999---706531899999999
Q ss_pred HCCCCCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEEEECCEEEECCCCEEEE-EEEC
Q ss_conf 0133332123-44442067542254466877579762487666----8986899833587788799818807999-9962
Q gi|254780206|r 308 HGNLHNTHIN-WKAEYALTVVVATKGYPEEYPHGTIISKIPQN----TGTTQLFHAGTAIVNNNLTANGGRVLSA-TALG 381 (424)
Q Consensus 308 ~g~L~~~~~~-~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~----~~~~~ifhagt~~~~g~l~t~GGRVL~v-v~~g 381 (424)
-|= .-..++ ..+.+|. |.++.. ...+....++.+. ..+..+| |+-.+.|+|-|.| .+.+
T Consensus 309 LGL-Pi~~i~~~~P~AS~-vI~~~~-----~~~~~~f~~l~~AL~~p~t~vRlF--------GKP~~~~~RRmGVaLA~a 373 (394)
T COG0027 309 LGL-PIPEIRQISPAASA-VILAQE-----TSQAPTFDGLAEALGVPDTQVRLF--------GKPEADGGRRLGVALATA 373 (394)
T ss_pred HCC-CCCCEEEECCCCCC-EEECCC-----CCCCCCHHHHHHHHCCCCCEEEEE--------CCCCCCCCCEEEEEEECC
T ss_conf 589-76421452543001-560333-----346775222888745898617980--------687566675046898427
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q ss_conf 89899999999998525899
Q gi|254780206|r 382 KTITESRELAYHMVENIDWK 401 (424)
Q Consensus 382 ~~l~eA~~~ay~~i~~I~~~ 401 (424)
++.++|+++|-+...+|+.+
T Consensus 374 ~~Ve~Are~A~~aa~~i~v~ 393 (394)
T COG0027 374 ESVEEARERARKAASAIEVK 393 (394)
T ss_pred CCHHHHHHHHHHHHHHEECC
T ss_conf 61999999999887605568
No 20
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.97 E-value=3.1e-27 Score=216.84 Aligned_cols=388 Identities=19% Similarity=0.222 Sum_probs=257.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCC-EEEEECCCHH--HHHCCEEEECC-------CCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 95899886588999999998589967-8999549835--75117055128-------78989999999871897999979
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLS-ELWSIPGNPG--IAQHAQCVAID-------IQNHSAIIHFCQEKHIDLVVVGP 70 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~-~v~~~pgN~g--~~~~~~~~~i~-------~~d~~~i~~~a~~~~iDlvivgp 70 (424)
+||||...|.+.--+..++++-.... .||--+.+.. .....+.+.+. ..|.+.++..|++...|.+++|.
T Consensus 3 ~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~pGy 82 (449)
T COG0439 3 KKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGY 82 (449)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC
T ss_conf 36999558536899999999849858999661002252566375679838865034565188899899860876672350
Q ss_pred CHHH--HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHCCCCEEEEEECC
Q ss_conf 5578--748998986058806701066655520102357888765310111122--344011111210124202563046
Q gi|254780206|r 71 ELPL--VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQH--FSDPMKAKQYVQNKSMPIVVKADG 146 (424)
Q Consensus 71 E~pL--~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~--~~~~~ea~~~~~~~g~PvVVKp~~ 146 (424)
. .| .+.+++.+++.|+..+||+.++.+..+||.-||++|+++|+|++++.. ..+.+++.+.++++||||+|||..
T Consensus 83 g-flsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~ 161 (449)
T COG0439 83 G-FLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAA 161 (449)
T ss_pred H-HHHCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 3-421788999999974975108498999974458999999997499958997877688899999998719978999778
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCCCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 534300023235677888788751445-----317778877520575-23442157763103520001113566544444
Q gi|254780206|r 147 LCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGFEV-SFFALCDGKTAIPFTTARDHKRIHDGDIGPNT 220 (424)
Q Consensus 147 ~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~E~-Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnT 220 (424)
..||+||++|++.+|+.+++..+.+.. +..|++|||+++++. .++++.||...++-...+|- .+ ....
T Consensus 162 GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdc-si-----qrr~ 235 (449)
T COG0439 162 GGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDC-SI-----QRRH 235 (449)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEECCC-CC-----CCCC
T ss_conf 89965479979999999999999988887558972786341058846899998768665899986466-87-----6776
Q ss_pred CCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC-CEEEEEEEEEEECCCCCEEEEECCCCCC
Q ss_conf 344300001234432220100000899999862046235664454489855-7048999886514775104433265441
Q gi|254780206|r 221 GGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE-QGPYLIEYNVRFGDPECQAMMMRLESDI 299 (424)
Q Consensus 221 GGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~-~gp~viE~N~R~GDPE~q~ilp~L~~dl 299 (424)
+-++--+|+|.++++ ..+.+.+..+++.+..| |+|.-.++|+++. .++|+||.|+|++ -|--+.-....-||
T Consensus 236 qkvieeapsp~~~~e----~r~~i~~~a~~a~~~~g--Y~gagtvEfl~~~~~~~yfiEmN~Rlq-veh~vte~vtGiDl 308 (449)
T COG0439 236 QKVIEEAPSPLLTEE----LREKIGEAAVRAAKLIG--YRGAGTVEFLYDSNGEFYFIEMNTRLQ-VEHPVTEMVTGIDL 308 (449)
T ss_pred CCEEEECCCCCCCHH----HHHHHHHHHHHHHHHCC--CCCCCEEEEEEECCCCEEEEEEECCCC-CCCCCEEEEHHHHH
T ss_conf 615530588889999----99999999999998638--777756999982799879999864113-67630100000428
Q ss_pred HHHHHHHHHCCCCC---CCCCCCCCCEEEEEECCCCCCCCCCCC-----CCCCCCCCCCCCCEEEEEEEEEECC---EEE
Q ss_conf 15666542013333---212344442067542254466877579-----7624876668986899833587788---799
Q gi|254780206|r 300 LEILNSCVHGNLHN---THINWKAEYALTVVVATKGYPEEYPHG-----TIISKIPQNTGTTQLFHAGTAIVNN---NLT 368 (424)
Q Consensus 300 ~~il~~~~~g~L~~---~~~~~~~~~~v~Vvlas~GYP~~~~kg-----~~I~~l~~~~~~~~ifhagt~~~~g---~l~ 368 (424)
+..++.++.|+--. .++.++ +..+...-|=....++ -.|....-.......++++.. .+. ..|
T Consensus 309 v~~qi~ia~ge~l~~~q~~~~~~-----g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~-~~~~i~~~y 382 (449)
T COG0439 309 VKEQIRIAAGEPLSLKQEDIKFR-----GHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVY-DGYRVPPYY 382 (449)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCC-----CEEEECEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEECC-CCCCCCCCH
T ss_conf 99999997699888777775613-----313100010568887857899765014079988668873213-585248641
Q ss_pred ECCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHHH
Q ss_conf 81880799999628989999999999852589995753517898
Q gi|254780206|r 369 ANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQ 412 (424)
Q Consensus 369 t~GGRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~~ 412 (424)
-+.+..+++.|.+.++|..+.++.+....-+| +++-+-+.
T Consensus 383 --ds~i~k~i~~~~~r~~ai~~~~~aL~e~~i~G--~~t~~~~~ 422 (449)
T COG0439 383 --DSMIGKVIVHGRTRDEAIARMRRALDELVIDG--IKTNIPLL 422 (449)
T ss_pred --HHHEEEEEEECCCHHHHHHHHHHHHHHEEECC--CCCCHHHH
T ss_conf --40136899964886999999998787627448--65786999
No 21
>PRK08462 biotin carboxylase; Validated
Probab=99.96 E-value=1.8e-27 Score=218.52 Aligned_cols=379 Identities=16% Similarity=0.215 Sum_probs=254.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC--C-CHHHHHC-CEEEEC-------CCCCHHHHHHHHHHHCCCEEEEC-
Q ss_conf 5899886588999999998589967899954--9-8357511-705512-------87898999999987189799997-
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP--G-NPGIAQH-AQCVAI-------DIQNHSAIIHFCQEKHIDLVVVG- 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p--g-N~g~~~~-~~~~~i-------~~~d~~~i~~~a~~~~iDlvivg- 69 (424)
||||...|--.-=++.++++.. +..|.+.. + +...... .+.+.+ +..|.+.|++.|++.+.|.+.||
T Consensus 6 kvLIANRGEIA~Ri~ra~~elg-i~tVavys~~D~~a~~v~~ad~~~~ig~~~~~~sYln~~~Ii~~a~~~~~dAihPGy 84 (446)
T PRK08462 6 RILIANRGEIALRAIRTIQEMG-KEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGY 84 (446)
T ss_pred EEEEECCHHHHHHHHHHHHHCC-CCEEEEECHHHHCCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECCC
T ss_conf 8999896099999999999829-969999376771676287598989828998433414899999999995919898682
Q ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf ---9557874899898605880670106665552010235788876531011112--23440111112101242025630
Q gi|254780206|r 70 ---PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 70 ---pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVKp 144 (424)
+|.+ .++..++++|+..+||+.++.+..+||..+|++|.++|+|+.++. .+++.+++.++++++|||++|||
T Consensus 85 GfLSEn~---~fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpg~~~~v~~~~ea~~~a~~iGyPV~lKa 161 (446)
T PRK08462 85 GFLSENQ---NFVEICSHHSIKFIGPSVEVMALMSDKSKAKQVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKA 161 (446)
T ss_pred HHHHHCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 0554087---9999999779989895999999840959899999985998067867877999999999997299568763
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEEECCCC-CCCCCC----CCCC-CCCCC
Q ss_conf 46534300023235677888788751445-----3177788775205-75234421577-631035----2000-11135
Q gi|254780206|r 145 DGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALCDGK-TAIPFT----TARD-HKRIH 212 (424)
Q Consensus 145 ~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~i~dG~-~~~~l~----~~~d-yKr~~ 212 (424)
+...||||+.++++.+|+.++++.+..++ +..|+||+||.++ ++-++++.|+. +++.+. ..|. |.++-
T Consensus 162 s~GGGGrGmriv~~~~el~~~~~~a~~ea~~~fg~~~v~vEk~i~~~rHIEvQvl~D~~Gn~ihl~eRdCSiQRr~QKvi 241 (446)
T PRK08462 162 AAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSMQRRHQKLI 241 (446)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCEE
T ss_conf 27899874289576799999999998778860588866999850355078999885289988885321236634678758
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE--EEEEEEEEEE--CCCCC
Q ss_conf 6654444434430000123443222010000089999986204623566445448985570--4899988651--47751
Q gi|254780206|r 213 DGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG--PYLIEYNVRF--GDPEC 288 (424)
Q Consensus 213 ~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g--p~viE~N~R~--GDPE~ 288 (424)
| .+|+|.+++++.+++. +.+++..+. +.|.|.--++|+++.++ -|+||+|+|+ --|=|
T Consensus 242 E------------eaPa~~l~~~~r~~m~----~~A~~la~~--vgY~gaGTvEFl~d~~~~~fyFlE~NtRlQVEH~VT 303 (446)
T PRK08462 242 E------------ESPAVVLDEKTRERLL----ETAIKAAKA--IGYVGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTVS 303 (446)
T ss_pred E------------ECCCCCCCHHHHHHHH----HHHHHHHHH--CCCCCCCEEEEEECCCCCEEEEEEEECCCCEECCCC
T ss_conf 9------------7899989989999988----899999986--483654338999807997189997433421001111
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-C-CCCCCCCCCCCEEEEEECCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 0443326544115666542013-3-332123444420675422544668775--79762487666898689983358778
Q gi|254780206|r 289 QAMMMRLESDILEILNSCVHGN-L-HNTHINWKAEYALTVVVATKGYPEEYP--HGTIISKIPQNTGTTQLFHAGTAIVN 364 (424)
Q Consensus 289 q~ilp~L~~dl~~il~~~~~g~-L-~~~~~~~~~~~~v~Vvlas~GYP~~~~--kg~~I~~l~~~~~~~~ifhagt~~~~ 364 (424)
..+ -.-||+..-+.++.|. | +..++.+ .++++-+=+.+.. |.++. .| .|..+....+...-+..++ ..
T Consensus 304 E~v---tGiDLV~~Qi~iA~G~~l~~q~~i~~-~GhaIe~Ri~AEd-p~~F~Ps~G-~i~~~~~P~g~gvRvDt~~--~~ 375 (446)
T PRK08462 304 EMV---SGLDLIEWMIKIAEGEELPSQESIKL-KGHAIECRITAED-PKKFYPSPG-KITKWIAPGGRNVRMDSHA--YA 375 (446)
T ss_pred CCC---CCCCHHHHHHHHHCCCCCCCCCCCCC-CCEEEEEEEECCC-CCCCCCCCE-EEEEEECCCCCCEEEECCC--CC
T ss_conf 221---48779999999867999875666672-6434223420458-776799875-8878987999998963887--78
Q ss_pred CEEEEC--CCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHHH
Q ss_conf 879981--880799999628989999999999852589995753517898
Q gi|254780206|r 365 NNLTAN--GGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQ 412 (424)
Q Consensus 365 g~l~t~--GGRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~~ 412 (424)
|..++. -+=+.-+++.|.|.++|..+..+.++.....|. .+.|.+-
T Consensus 376 G~~v~~~yDsmlaKlI~~g~~R~~Ai~rl~~aL~e~~I~Gv--~Tni~~l 423 (446)
T PRK08462 376 GYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALDEFKVEGI--KTTIPFH 423 (446)
T ss_pred CCEECCCCCCHHHEEEEECCCHHHHHHHHHHHHHCCEEECC--CCCHHHH
T ss_conf 59879765574135889899999999999999844599893--2849999
No 22
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=99.96 E-value=3.7e-29 Score=230.71 Aligned_cols=360 Identities=20% Similarity=0.289 Sum_probs=254.4
Q ss_pred EEEEECCCH------HH------HHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 589988658------89------99999998589967899954983575----117055128789899999998718979
Q gi|254780206|r 2 RVLLIGSGG------RE------HALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsGg------rE------hAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
||||||||+ -| +| |+||++.+. .|.+++-||.|- .+|+.+++.+...+.|.+++++++||.
T Consensus 8 kvLviGSGPi~IGQAaEFDYSGsQA-cKALkEEGy--~viLVNsNpATimTD~~~AD~vY~ePlT~e~V~~IIEKERPDg 84 (1089)
T TIGR01369 8 KVLVIGSGPIVIGQAAEFDYSGSQA-CKALKEEGY--EVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDG 84 (1089)
T ss_pred EEEEECCCCCCHHHHCCCHHHHHHH-HHHHHHCCC--EEEEECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 8999666731131202302478999-999876495--7999758847233886686600252545888866653168660
Q ss_pred EEE--CCCHHHHHHH----HHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 999--7955787489----9898605880670106665552010235788876531011112234401111121012420
Q gi|254780206|r 66 VVV--GPELPLVNGI----SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP 139 (424)
Q Consensus 66 viv--gpE~pL~~gi----~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P 139 (424)
+.+ |-..-|..|| ...|++.|+.++|.+-+|.+..=|+...|++|++.|+|+|++..+++.+||.++++++|||
T Consensus 85 iL~t~GGQTALNlav~L~~~GVL~kYgV~vLGT~~eaI~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eEA~~~a~~~GyP 164 (1089)
T TIGR01369 85 ILPTLGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPKSEIVHSVEEALKAAKEIGYP 164 (1089)
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 00257603577778866206851452917852342435202027999999997389988110027889999999626896
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHCC-CCCEEEECCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 2563046534300023235677888788751445-3177788775205-75234421577-6310352000111356654
Q gi|254780206|r 140 IVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-NSTVIIEEYLEGF-EVSFFALCDGK-TAIPFTTARDHKRIHDGDI 216 (424)
Q Consensus 140 vVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-~~~VliEefl~G~-E~Sv~~i~dG~-~~~~l~~~~dyKr~~~~d~ 216 (424)
|+|+|+.-.||.|=.||+|.+|+.+-++++|..+ =++|||||-|.|. |+-.+++-|-. +.+........ ..+
T Consensus 165 viVRpAftLGG~GgGiA~n~eEL~~~~~~aL~~SpI~qvL~EkSl~GWKE~EYEVmRD~~dNCItVCNmEN~-----DPm 239 (1089)
T TIGR01369 165 VIVRPAFTLGGTGGGIASNEEELKEIVERALSASPINQVLVEKSLAGWKEIEYEVMRDSKDNCITVCNMENF-----DPM 239 (1089)
T ss_pred EEECCCHHCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCC-----CCC
T ss_conf 898100323889985225778999999988630888557501100331788988986268788999745476-----898
Q ss_pred CCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEE-EEEEEEEECCE--EEEEEEEEEECCCCCEEEEE
Q ss_conf 4444344300001234432220100000899999862046235664-45448985570--48999886514775104433
Q gi|254780206|r 217 GPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGV-LFAGLMITEQG--PYLIEYNVRFGDPECQAMMM 293 (424)
Q Consensus 217 GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~-l~~~~m~t~~g--p~viE~N~R~GDPE~q~ilp 293 (424)
|-.||-==.++|+=++++...+.+.+ .--++++.|.-+ |= -.+||=|.+++ -||||+|+|+.=- .
T Consensus 240 GVHTGdSIVVAPSQTLtD~EYQ~LR~-~sikIIR~lGi~-----GgGCNvQFAL~P~s~~Y~vIEvNPRvSRS---S--- 307 (1089)
T TIGR01369 240 GVHTGDSIVVAPSQTLTDKEYQMLRD-ASIKIIRELGIV-----GGGCNVQFALDPDSGRYYVIEVNPRVSRS---S--- 307 (1089)
T ss_pred CEEECCCEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCE-----ECCCCEEEEECCCCCCEEEEEECCCCCHH---H---
T ss_conf 45707833650763688078999999-999999873912-----16742132150789706999867882135---8---
Q ss_pred CCCC-----CCHHHHHHHHHCC-CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE-ECCE
Q ss_conf 2654-----4115666542013-3332123444420675422544668775797624876668986899833587-7887
Q gi|254780206|r 294 RLES-----DILEILNSCVHGN-LHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAI-VNNN 366 (424)
Q Consensus 294 ~L~~-----dl~~il~~~~~g~-L~~~~~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~-~~g~ 366 (424)
-|-| ++.-+--+.+-|- |++++-...+..+.| +.+.-+..+..+|.=+-+ + | .++.+ -...
T Consensus 308 ALASKATGYPiAkvAAKLAvGY~LdEl~N~vT~~T~A~---------FEPSLDYvVvKIPRW~f~-K-F-~~v~r~LGt~ 375 (1089)
T TIGR01369 308 ALASKATGYPIAKVAAKLAVGYGLDELKNPVTKTTPAS---------FEPSLDYVVVKIPRWDFD-K-F-EGVDRKLGTQ 375 (1089)
T ss_pred HHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---------CCCCCCEEEECCCCCCCH-H-H-CCCCCCCCCE
T ss_conf 98766516628999999846887876568888853541---------046748088606788722-1-0-5788541521
Q ss_pred EEECCCCEEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 9981880799999628989999999999852
Q gi|254780206|r 367 LTANGGRVLSATALGKTITESRELAYHMVEN 397 (424)
Q Consensus 367 l~t~GGRVL~vv~~g~~l~eA~~~ay~~i~~ 397 (424)
-.| |--|=|.|-|+|||.+||-+-++.
T Consensus 376 MKS----vGEVMAIGRtFEEALQKA~Rsle~ 402 (1089)
T TIGR01369 376 MKS----VGEVMAIGRTFEEALQKALRSLEI 402 (1089)
T ss_pred EEE----EEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 015----777734671389999898876537
No 23
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.96 E-value=6.7e-28 Score=221.62 Aligned_cols=363 Identities=16% Similarity=0.225 Sum_probs=247.9
Q ss_pred EEEEECCC------HHH------HHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 58998865------889------99999998589967899954983575----117055128789899999998718979
Q gi|254780206|r 2 RVLLIGSG------GRE------HALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsG------grE------hAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
|||||||| +-| || +++|++... ++.+.+-||.|- ..+..+++.+...+.+.++.++++||.
T Consensus 9 kvLiiGsGpi~IGqa~EfDysg~qA-~~aLkeeG~--~vvlvN~NPaTi~TD~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~ 85 (1068)
T PRK12815 9 KILVIGSGPIIIGQAAEFDYSGTQA-CKALKEEGY--QVVLVNPNPATIMTDPEPADTVYFEPLTLEFVKRIIRREKPDA 85 (1068)
T ss_pred EEEEECCCCCHHCCHHHHHHHHHHH-HHHHHHCCC--EEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCE
T ss_conf 8999898815312344656569999-999998699--8999889832620898744437885898999999999749998
Q ss_pred EEE--CCCHHHHH--HHH--HHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 999--79557874--899--898605880670106665552010235788876531011112234401111121012420
Q gi|254780206|r 66 VVV--GPELPLVN--GIS--DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP 139 (424)
Q Consensus 66 viv--gpE~pL~~--gi~--d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P 139 (424)
+++ |...+|.. .+. ..|++.|++++|.+.++.+..-|+...+++|++.|+|+|++..+++.++|.++++++|||
T Consensus 86 il~~~GGqtaLnla~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s~~ea~~~a~~ig~P 165 (1068)
T PRK12815 86 LLATLGGQTALNLAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVDSEEEALRFAEKIGFP 165 (1068)
T ss_pred EEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHCCCC
T ss_conf 98677784799999999975977865964967999999864599999999997699999705219999999999866998
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHCC-CCCEEEECCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 2563046534300023235677888788751445-3177788775205-752344215776-310352000111356654
Q gi|254780206|r 140 IVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-NSTVIIEEYLEGF-EVSFFALCDGKT-AIPFTTARDHKRIHDGDI 216 (424)
Q Consensus 140 vVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-~~~VliEefl~G~-E~Sv~~i~dG~~-~~~l~~~~dyKr~~~~d~ 216 (424)
++|+|+...||.|..+++|.+|+.+++.+.+..+ .++|+|||+|.|. |+.++++.|+.. .+.....++.. ..
T Consensus 166 vivRps~~lGg~g~~i~~n~~eL~~~~~~~~~~S~~~~vlie~sl~gwkEie~ev~RD~~~n~i~vc~mEnid-----P~ 240 (1068)
T PRK12815 166 IIVRPAYTLGGDGGGIAENEEELEQLARQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNDNCVTVCNMENID-----PV 240 (1068)
T ss_pred EEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEEEEECCCCEEEEEECCCCC-----CC
T ss_conf 9998361066896504459999999999999639998578650117976999999998898979985412354-----45
Q ss_pred CCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECC--EEEEEEEEEEECCCCCEEEEEC
Q ss_conf 44443443000012344322201000008999998620462356644544898557--0489998865147751044332
Q gi|254780206|r 217 GPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQ--GPYLIEYNVRFGDPECQAMMMR 294 (424)
Q Consensus 217 GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~--gp~viE~N~R~GDPE~q~ilp~ 294 (424)
|-+||-==+++|+-.++++..+++.+ . +++-++..|+ +|..++||-+..+ .-||||+|+|+.-- -++...
T Consensus 241 GIHTGDSi~vaP~qTL~d~e~q~lR~-~---a~~I~~~lgv--~G~~NiQFAv~p~~~~~~VIEvNPR~SRs--salaSK 312 (1068)
T PRK12815 241 GVHTGDSIVVAPSQTLTDDEYQMLRS-A---SLKIIRALGV--VGGCNIQFALDPRSKQYYVIEVNPRVSRS--SALASK 312 (1068)
T ss_pred CCCCCCCCEECCCCCCCHHHHHHHHH-H---HHHHHHHCCE--ECCEEEEEEECCCCCCEEEEECCCCCCCH--HHHHHH
T ss_conf 43567745345781269999999999-9---9999997280--10105799886999828999647862202--478887
Q ss_pred CCC-CCHHHHHHHHHCC-CCCCCCCCCCCCEEEEEECCCCCCC-CCCC-CCCCCCCCCCCCCCEEEEEEEEEECCEEEEC
Q ss_conf 654-4115666542013-3332123444420675422544668-7757-9762487666898689983358778879981
Q gi|254780206|r 295 LES-DILEILNSCVHGN-LHNTHINWKAEYALTVVVATKGYPE-EYPH-GTIISKIPQNTGTTQLFHAGTAIVNNNLTAN 370 (424)
Q Consensus 295 L~~-dl~~il~~~~~g~-L~~~~~~~~~~~~v~Vvlas~GYP~-~~~k-g~~I~~l~~~~~~~~ifhagt~~~~g~l~t~ 370 (424)
-.. ++..+.-..+-|. |+++........ .|+- -|. .|.. -.+.+.+++-..... += +....+
T Consensus 313 ATGyPiAkvaaklalG~~L~ei~n~iTg~t-----~A~f-EP~lDyvvvK~P~~~F~kf~~~d~--~L-----gt~Mks- 378 (1068)
T PRK12815 313 ATGYPIAKIAAKLAVGYTLDEIKNPLTGLT-----YASF-EPTLDYVVVKFPRWPFDKFGYADR--TL-----GTQMKA- 378 (1068)
T ss_pred HCCCCHHHHHHHHHCCCCHHHCCCCCCCCC-----CCCC-CCCCCEEEEEEECCCCCCCCCCCC--CC-----CCCCCC-
T ss_conf 508848999999863887777066413773-----0333-775776999740566444678875--44-----751233-
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 880799999628989999999999852
Q gi|254780206|r 371 GGRVLSATALGKTITESRELAYHMVEN 397 (424)
Q Consensus 371 GGRVL~vv~~g~~l~eA~~~ay~~i~~ 397 (424)
|-.|.+.|.|+++|..+|.+.++.
T Consensus 379 ---~Gevm~igr~f~eA~~KAlrsle~ 402 (1068)
T PRK12815 379 ---TGEVMAIGRNFESAFQKALRSLEI 402 (1068)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ---322200300289999999986335
No 24
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.96 E-value=1.1e-26 Score=212.81 Aligned_cols=371 Identities=19% Similarity=0.264 Sum_probs=250.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH-----HHHCCEEEEC-------CCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 58998865889999999985899678999549835-----7511705512-------87898999999987189799997
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPG-----IAQHAQCVAI-------DIQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g-----~~~~~~~~~i-------~~~d~~~i~~~a~~~~iDlvivg 69 (424)
||||---|--.-=+.+++++-. +..|.+.. |+- ....++.+.+ +..|.+.|++.|++.++|.+.||
T Consensus 4 kvLIANRGEIA~RiiRa~relG-i~tVaVyS-~~D~~s~hv~~ADe~~~ig~~~~~~sYLni~~Ii~~A~~~g~dAIhPG 81 (497)
T PRK08654 4 KILIANRGEIAIRVMRACRELG-IKTVAVYS-EADKNALFVKYADEAYPIGPAPPSKSYLNMERILEVAKKAGAEAIHPG 81 (497)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEECC-HHHHCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf 0899878799999999999859-93999888-378548997888989984898832121689999999998099999577
Q ss_pred ----CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEE
Q ss_conf ----9557874899898605880670106665552010235788876531011112--2344011111210124202563
Q gi|254780206|r 70 ----PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVK 143 (424)
Q Consensus 70 ----pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVK 143 (424)
+|.| .+++.++++||.++||+.++.+..+||..+|++|+++|+|+.++. .+++.+++.++++++|||++||
T Consensus 82 YGFLSEn~---~fA~~~~~~Gi~fIGP~~~~I~~~GDK~~ar~la~~~gVPvvPG~~~~v~~~~ea~~~A~~IGyPV~iK 158 (497)
T PRK08654 82 YGFLSENP---KFAKACEKEGITFIGPSSNVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEVAEEIGYPVIIK 158 (497)
T ss_pred HHHHHHCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 76755489---999999987999999399999986588999999998099868997566799999999998649845876
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEEECCCC-CCCCCCC----CC-CCCCC
Q ss_conf 046534300023235677888788751445-----3177788775205-75234421577-6310352----00-01113
Q gi|254780206|r 144 ADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALCDGK-TAIPFTT----AR-DHKRI 211 (424)
Q Consensus 144 p~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~i~dG~-~~~~l~~----~~-dyKr~ 211 (424)
|+...||||+.++++.+|+.++++.+...+ +..|+||+||+++ ++-++++.|+. +++.+.. .| -|.++
T Consensus 159 As~GGGGrGmriV~~~~eL~~~~~~a~~eA~~~fgd~~v~iEk~i~~~RHIEVQvl~D~~GnvihlgeRdCSiQRr~QKv 238 (497)
T PRK08654 159 ASAGGGGIGMRVVYNEEELEEAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQVLADKHGNVIHLGDRECSIQRRHQKL 238 (497)
T ss_pred ECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEECCEECCEEECCCCE
T ss_conf 52688888658996025689999999999887459984579884155537899999844797867146023436268636
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEE--CCCCCE
Q ss_conf 566544444344300001234432220100000899999862046235664454489855704899988651--477510
Q gi|254780206|r 212 HDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRF--GDPECQ 289 (424)
Q Consensus 212 ~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~--GDPE~q 289 (424)
-| .+|+|.+++++.+++ .+.+++..+..| |+|.--++|+++++..|+||.|+|+ --|=|.
T Consensus 239 IE------------eaPap~l~~~~r~~m----~~~Av~la~~vg--Y~gaGTVEFl~d~g~fyFlEmNtRlQVEHpVTE 300 (497)
T PRK08654 239 IE------------EAPSPIMTPELRERM----GEAAVKAAKAIN--YENAGTVEFLYSNGNFYFLEMNTRLQVEHPITE 300 (497)
T ss_pred EE------------ECCCCCCCHHHHHHH----HHHHHHHHHHHC--EECCCEEEEEEECCEEEEEEEECCCCCCCCCCH
T ss_conf 99------------789998988999999----999999888734--302332799874883999961244224554216
Q ss_pred EEEECCCCCCHHHHHHHHHCC-CC--CCCCCCCCCCEEEEEECCCCCCC---CCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 443326544115666542013-33--32123444420675422544668---7757976248766689868998335877
Q gi|254780206|r 290 AMMMRLESDILEILNSCVHGN-LH--NTHINWKAEYALTVVVATKGYPE---EYPHGTIISKIPQNTGTTQLFHAGTAIV 363 (424)
Q Consensus 290 ~ilp~L~~dl~~il~~~~~g~-L~--~~~~~~~~~~~v~Vvlas~GYP~---~~~kg~~I~~l~~~~~~~~ifhagt~~~ 363 (424)
.+ -.-||+..-..++.|. |. ..++.. .++++-+=+.+.. |. .+..|. |+.+....+. |+ +.
T Consensus 301 ~v---TGiDLV~~Qi~iA~G~~L~~~q~~i~~-~GhAIe~Ri~AEd-P~~~F~Ps~G~-i~~~~~P~g~------gv-Rv 367 (497)
T PRK08654 301 MV---TGIDIVKEQIKIAAGEKLSFKQEDITI-RGHAIECRINAED-PLNDFAPSPGK-IKRYRSPGGP------GV-RV 367 (497)
T ss_pred HH---CCCCHHHHHHHHHCCCCCCCCCCCCCC-CEEEEEEECCCCC-CCCCCCCCCCE-EEEEECCCCC------CE-EE
T ss_conf 66---087199999998679988910037777-5139999810358-88786458736-6079759999------88-99
Q ss_pred CCEEEECC--------CCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHH
Q ss_conf 88799818--------8079999962898999999999985258999575351789
Q gi|254780206|r 364 NNNLTANG--------GRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 (424)
Q Consensus 364 ~g~l~t~G--------GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~ 411 (424)
|..++ .| +=+.-+++.|.|.++|..+..+++......| -+|.|.+
T Consensus 368 D~~v~-~G~~v~~~yDsmlaKli~~g~~R~~Ai~r~~rAL~e~~I~G--v~Tni~~ 420 (497)
T PRK08654 368 DSGVH-MGYTIPPYYDSMISKLIVWGRTREEAIARMKRALYEYIILG--VKTNIPF 420 (497)
T ss_pred ECCCC-CCCCCCCCCCCHHCEEEEECCCHHHHHHHHHHHHHCCEEEC--CCCCHHH
T ss_conf 64564-68973886543330367988999999999999985469989--5487999
No 25
>PRK05586 biotin carboxylase; Validated
Probab=99.96 E-value=2.9e-26 Score=209.85 Aligned_cols=379 Identities=15% Similarity=0.201 Sum_probs=253.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEE-ECC--C-HHHHHCCEEEEC-------CCCCHHHHHHHHHHHCCCEEEEC-
Q ss_conf 58998865889999999985899678999-549--8-357511705512-------87898999999987189799997-
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWS-IPG--N-PGIAQHAQCVAI-------DIQNHSAIIHFCQEKHIDLVVVG- 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~-~pg--N-~g~~~~~~~~~i-------~~~d~~~i~~~a~~~~iDlvivg- 69 (424)
||||---|--.-=+..+.++- .+..|.+ .+. | +......+.+.+ +..|.+.|++.|++.+.|.|.||
T Consensus 4 kvLIANRGEIA~Ri~rt~~~l-gi~tVavys~~D~~a~hv~~Ade~~~lg~~~~~~sYln~~~ii~~A~~~g~dAihPGY 82 (447)
T PRK05586 4 KILIANRGEIAVRIIRACREM-GIETVAVYSEIDKDALHVQLADEAVCIGPASSKDSYLNIYNILSATVLTGAQAIHPGF 82 (447)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHCCEEEECCCCCHHHHHCCHHHHHHHHHHHCCCEEECCC
T ss_conf 499989879999999999983-9959999170336785476498998739999565114899999999984998997185
Q ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf ---9557874899898605880670106665552010235788876531011112--23440111112101242025630
Q gi|254780206|r 70 ---PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 70 ---pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVKp 144 (424)
+|.| .++.+++++|+..+||+.++.+..+||..+|+++.++|+|+.++. .+++.+++.++++++|||++|||
T Consensus 83 GFLSEna---~Fa~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPv~pg~~~~v~~~~ea~~~a~~iGyPv~lKA 159 (447)
T PRK05586 83 GFLSENS---KFAKMCKECNIVFIGPDSETIELMGNKSNAREIMKKAGVPVVPGSEGEIENEEEALKIAEEIGYPVMVKA 159 (447)
T ss_pred CHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 5322389---9999999879879895999999853849999999984997656868888999999999986298237630
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEEECCCC-CCCCCC----CCC-CCCCCC
Q ss_conf 46534300023235677888788751445-----3177788775205-75234421577-631035----200-011135
Q gi|254780206|r 145 DGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALCDGK-TAIPFT----TAR-DHKRIH 212 (424)
Q Consensus 145 ~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~i~dG~-~~~~l~----~~~-dyKr~~ 212 (424)
+...||||+.++++.+|+.++++.+..++ ++.|+||+||+++ ++-++++.|+. +++.+. ..| -|.++-
T Consensus 160 a~GGGGrGmriv~~~~el~~~~~~a~~ea~~aFg~~~v~vEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSiQRr~QKvI 239 (447)
T PRK05586 160 SAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPRHIEFQILGDNYGNVVHLGERDCSLQRRNQKVL 239 (447)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEE
T ss_conf 56999773699899999999999999999982799846887724787179999997079988884064246656886379
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEECCCCCEEE
Q ss_conf 6654444434430000123443222010000089999986204623566445448985570-489998865147751044
Q gi|254780206|r 213 DGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQAM 291 (424)
Q Consensus 213 ~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~GDPE~q~i 291 (424)
| .+|+|.+++++.+++ .+.+++..+. +.|.|.--++|++++++ .|+||.|+|+= .|--+-
T Consensus 240 E------------eaPap~l~~~~r~~m----~~~A~~la~~--vgY~gaGTvEFl~d~~~~fyFlEvNtRlQ-VEH~VT 300 (447)
T PRK05586 240 E------------EAPSPVMTEELRKKM----GEIAVKAAKA--VNYKNAGTIEFLLDKDGNFYFMEMNTRIQ-VEHPIT 300 (447)
T ss_pred E------------ECCCCCCCHHHHHHH----HHHHHHHHHH--CCCCCCCEEEEEECCCCCEEEEEEECCCC-CCCCCE
T ss_conf 9------------889998889999999----9999988886--06033324788875899789993343555-566411
Q ss_pred EECCCCCCHHHHHHHHHCCCCC---CCCCCCCCCEEEEEECCCCCCC---CCCCCCCCCCCCCCCC-CCEEEEEEEEEEC
Q ss_conf 3326544115666542013333---2123444420675422544668---7757976248766689-8689983358778
Q gi|254780206|r 292 MMRLESDILEILNSCVHGNLHN---THINWKAEYALTVVVATKGYPE---EYPHGTIISKIPQNTG-TTQLFHAGTAIVN 364 (424)
Q Consensus 292 lp~L~~dl~~il~~~~~g~L~~---~~~~~~~~~~v~Vvlas~GYP~---~~~kg~~I~~l~~~~~-~~~ifhagt~~~~ 364 (424)
=..-.-||+...+.++.|.--. .++.+ .++++-+=+.+.. |. .+..|. |+.+....+ ++.+ ..++ ..
T Consensus 301 E~vtGvDLV~~Qi~iA~G~~L~~~q~~i~~-~GhAIe~Ri~AEd-p~~~f~Ps~G~-i~~~~~P~g~gvRv-Dt~~--~~ 374 (447)
T PRK05586 301 EMITGVDLVKEQIKIAYGEKLSITQEDIKI-NGHAIECRINAED-PENGFMPCPGK-IEELYIPGGLGVRL-DSAI--YS 374 (447)
T ss_pred EECCCCCHHHHHHHHHCCCCCCCCCCCCCC-CCEEEEEEEECCC-CCCCCCCCCCE-EEEEECCCCCCEEE-ECCC--CC
T ss_conf 000377689999998679999977010787-8569999821457-88785058756-65897699998898-7874--58
Q ss_pred CEEEECC--CCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHH
Q ss_conf 8799818--8079999962898999999999985258999575351789
Q gi|254780206|r 365 NNLTANG--GRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 (424)
Q Consensus 365 g~l~t~G--GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~ 411 (424)
|..++.- +=+.-+++.|.|.++|..+..+.++.....|. ++.|.+
T Consensus 375 G~~v~~~yDsllaK~I~~g~~R~~Ai~rl~~aL~~~~i~Gv--~Tni~~ 421 (447)
T PRK05586 375 GYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEGV--KTNIDF 421 (447)
T ss_pred CCCCCCCCCCHHCEEEEECCCHHHHHHHHHHHHHCCEEECC--CCCHHH
T ss_conf 79648864622324779889999999999999843799793--487999
No 26
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.96 E-value=9.6e-28 Score=220.49 Aligned_cols=275 Identities=21% Similarity=0.253 Sum_probs=191.8
Q ss_pred CEEEEECCC-HHHHH--------HHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEEC--
Q ss_conf 958998865-88999--------9999985899678999549835751170551287898999999987189799997--
Q gi|254780206|r 1 MRVLLIGSG-GREHA--------LAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVG-- 69 (424)
Q Consensus 1 MkILviGsG-grEhA--------l~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivg-- 69 (424)
|||+||-+| ..||. +..+|.+... +++ .+|+.+ ......++.++|+|++.
T Consensus 5 ~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y--~v~---------------~id~~~--~~~~~l~~~~~D~vf~~lH 65 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGY--DAH---------------PIDPGE--DPAAELKELGFDRVFNALH 65 (304)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC--EEE---------------EECCCC--CHHHHHHHCCCCEEEEECC
T ss_conf 718999367871289999999999998837599--799---------------982896--4677875339999999068
Q ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECC
Q ss_conf ---95578748998986058806701066655520102357888765310111122344011111210124202563046
Q gi|254780206|r 70 ---PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADG 146 (424)
Q Consensus 70 ---pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~ 146 (424)
-|+=- +...|+..|||..|++..++.+..||..+|.+|+.+|||||+|..++..++..+..+.++||+||||..
T Consensus 66 G~~GEDG~---iQglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~l~~P~iVKP~~ 142 (304)
T PRK01372 66 GRGGEDGT---IQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAIDKLGLPLVVKPAR 142 (304)
T ss_pred CCCCCCHH---HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEECC
T ss_conf 99985649---999999859983579989987765389999999986999898499865313999987618987997668
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 534300023235677888788751445317778877520575234421577631035200--011135665444443443
Q gi|254780206|r 147 LCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTAR--DHKRIHDGDIGPNTGGMG 224 (424)
Q Consensus 147 ~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~--dyKr~~~~d~GpnTGGMG 224 (424)
..++.||.++++.+|+.++++.+|. .+++|||||||+|.|++|.++ |... +|++. .-...||.+.--+.|+--
T Consensus 143 ~GSSiGv~~V~~~~el~~ai~~a~~-~~~~vLvE~~I~GrEitv~Vl--g~~~--lp~~eI~~~~~fyDy~aKY~~~~s~ 217 (304)
T PRK01372 143 EGSSVGVTKVKEADELPAALELAFK-YDDEVLVEKYIKGRELTVAVL--GGKA--LPVIRIVPPGEFYDYEAKYLAGDTQ 217 (304)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHH-CCCCCEEEEEECCEEEEEEEE--CCCC--CCEEEEECCCCCCCHHHCCCCCCCC
T ss_conf 8866653896698899999999874-488625450256569999998--9977--7538994599875776612557741
Q ss_pred EEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEECCCCCEEEEECCC----CCC
Q ss_conf 0000123443222010000089999986204623566445448985570-48999886514775104433265----441
Q gi|254780206|r 225 ACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQAMMMRLE----SDI 299 (424)
Q Consensus 225 a~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~GDPE~q~ilp~L~----~dl 299 (424)
.++|++ +++++. ++|-+-+.++.+..|+ +|+..+||+++++| ||++|+|+=.| .....++|.+- -++
T Consensus 218 ~~~Pa~-l~~~~~----~~i~~~a~~~~~aLg~--~g~aRvDf~~~~~g~~~~lEiNt~PG-mT~~Sl~P~~a~~~G~s~ 289 (304)
T PRK01372 218 YLCPAG-LPAELE----AELQALALRAYKALGC--RGWGRVDFMLDEDGKPYLLEVNTSPG-MTSHSLVPMAARAAGISF 289 (304)
T ss_pred EECCCC-CCHHHH----HHHHHHHHHHHHHHCC--CCEEEEEEEEECCCCEEEEEECCCCC-CCCCCHHHHHHHHCCCCH
T ss_conf 100689-999999----9999999999998499--73698899990799789998339999-874158999999819999
Q ss_pred HHHHHHHHHCC
Q ss_conf 15666542013
Q gi|254780206|r 300 LEILNSCVHGN 310 (424)
Q Consensus 300 ~~il~~~~~g~ 310 (424)
-+++..+++.-
T Consensus 290 ~~li~~ii~~A 300 (304)
T PRK01372 290 SELVVWILEDA 300 (304)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 27
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.95 E-value=2.1e-25 Score=203.53 Aligned_cols=380 Identities=16% Similarity=0.203 Sum_probs=248.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEE--C-CCH-HHHHCCEEEEC-------CCCCHHHHHHHHHHHCCCEEEEC-
Q ss_conf 589988658899999999858996789995--4-983-57511705512-------87898999999987189799997-
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSI--P-GNP-GIAQHAQCVAI-------DIQNHSAIIHFCQEKHIDLVVVG- 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~--p-gN~-g~~~~~~~~~i-------~~~d~~~i~~~a~~~~iDlvivg- 69 (424)
||||---|=-.-=+..++++-. +..|-+. + .|. ......+.+.+ +..|.+.|++.|++.+.|.+.||
T Consensus 4 kvLIANRGEIA~Ri~rt~~elg-i~tvavys~~D~~a~hv~~Ade~v~ig~~~~~~sYln~~~Ii~~A~~~g~dAIHPGY 82 (449)
T PRK06111 4 KVLIANRGEIAVRIIRTCQKLG-IRTVAIYSEADEDALHVKLADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPGY 82 (449)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEECCHHHCCCHHHHHCCEEEEECCCCHHHHHCCHHHHHHHHHHHCCCEEECCC
T ss_conf 1899878799999999999849-979999173645683587498988808997454333999999999983999997798
Q ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf ---9557874899898605880670106665552010235788876531011112--23440111112101242025630
Q gi|254780206|r 70 ---PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 70 ---pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVKp 144 (424)
+|. +.+++.++++|+..+||+.++.+..+||.-+|+++.++|||+.++. .+++.+++.++++++|||++|||
T Consensus 83 GFLSEn---a~FA~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvPG~~~~~~~~~ea~~~a~~iGyPvliKA 159 (449)
T PRK06111 83 GLLSEN---ASFAERCKEEGIVFIGPSAEIIAKMGSKIEARRAMQAAGVPVVPGITTALEDAEEAIAIARQIGYPVMLKA 159 (449)
T ss_pred CCCCCC---HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 731169---89999999889989992999999864869999999983998557867778999999999986598026620
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCC----C-CHHHHHHHHHHC-CCCCEEEECCCC-CCCCCCC----CC-CCCCCC
Q ss_conf 4653430002323567788878875144----5-317778877520-575234421577-6310352----00-011135
Q gi|254780206|r 145 DGLCAGKGVVVAATVDEATSAIDRCFQQ----I-NSTVIIEEYLEG-FEVSFFALCDGK-TAIPFTT----AR-DHKRIH 212 (424)
Q Consensus 145 ~~~agGkGV~i~~~~~e~~~~~~~~~~~----~-~~~VliEefl~G-~E~Sv~~i~dG~-~~~~l~~----~~-dyKr~~ 212 (424)
+...||||+.++++.+|+.++++.+..+ . +..|++|+|+++ ..+-|+++.|+. +++.+.. .| -|.++-
T Consensus 160 a~GGGGrGmriv~~~~el~~~~~~~~~eA~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~Gn~vhlgeRdCSiQRr~QKvi 239 (449)
T PRK06111 160 SAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYLEKYIEDARHIEIQLLADTHGNTVYLWERECSVQRRHQKVI 239 (449)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEE
T ss_conf 35898672089579999999999999999986399602554413577337999997068888883051226635774169
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEECCCCCEEE
Q ss_conf 6654444434430000123443222010000089999986204623566445448985570-489998865147751044
Q gi|254780206|r 213 DGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQAM 291 (424)
Q Consensus 213 ~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~GDPE~q~i 291 (424)
| -+|+|.+++++.+++ .+.+++..+. +.|+|.--++|++++++ .|+||.|+|+- .|--+-
T Consensus 240 E------------eaPap~l~~~~r~~~----~~~A~~la~~--v~Y~g~gTvEFl~d~~~~fyFlEvNtRlQ-VEHpVT 300 (449)
T PRK06111 240 E------------EAPSPFLDEETRKAM----GEAAVQAAKA--IGYTNAGTIEFLVDNQKNFYFLEMNTRLQ-VEHPVT 300 (449)
T ss_pred E------------ECCCCCCCHHHHHHH----HHHHHHHHHH--CCEEEEEEEEEEEECCCCEEEEEEECCCC-CCCCEE
T ss_conf 9------------789999999999999----9999999887--17102468999994898689995343544-466404
Q ss_pred EECCCCCCHHHHHHHHHCCCCC---CCCCCCCCCEEEEEECCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEEEEECCE
Q ss_conf 3326544115666542013333---2123444420675422544668775--7976248766689868998335877887
Q gi|254780206|r 292 MMRLESDILEILNSCVHGNLHN---THINWKAEYALTVVVATKGYPEEYP--HGTIISKIPQNTGTTQLFHAGTAIVNNN 366 (424)
Q Consensus 292 lp~L~~dl~~il~~~~~g~L~~---~~~~~~~~~~v~Vvlas~GYP~~~~--kg~~I~~l~~~~~~~~ifhagt~~~~g~ 366 (424)
=..-.-||+...+.++.|.--. .++.. +++++-+=+.+.. |..+. .| .|..+....+...-+.+++ ..|.
T Consensus 301 E~vtGiDLV~~Qi~iA~G~~L~~~q~~i~~-~GhAIe~Ri~AEd-p~~f~Ps~G-~i~~~~~P~g~gvRvDs~~--~~G~ 375 (449)
T PRK06111 301 EEITGIDLVEQQLRIAAGEKLSFTQDDIKR-SGHAIEVRIYAED-PKTFFPSPG-KITDLTLPGGEGVRHDHAV--ENGV 375 (449)
T ss_pred EEECCCCHHHHHHHHHCCCCCCCCHHHCCC-CCEEHHHHHHCCC-CCCCCCCCE-EEEEEECCCCCCEEEECCC--CCCC
T ss_conf 555388489999998679989989666685-6120555551378-565789986-9999984899988885366--6859
Q ss_pred EEECC--CCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHH
Q ss_conf 99818--8079999962898999999999985258999575351789
Q gi|254780206|r 367 LTANG--GRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 (424)
Q Consensus 367 l~t~G--GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~ 411 (424)
.++.. +=+.-+++.|.|.++|..+..+.++.....|. .|-|.+
T Consensus 376 ~v~~~yDsmlaKlI~~g~~R~~Ai~rl~~aL~e~~I~Gv--~Tni~~ 420 (449)
T PRK06111 376 TVTPFYDPMIAKVIAHGETREEAIARLHDALEELKVEGI--KTNIPL 420 (449)
T ss_pred EECCCCCCHHHEEEEECCCHHHHHHHHHHHHHCCEEECC--CCCHHH
T ss_conf 708875653325679879999999999999851699894--385999
No 28
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.95 E-value=1e-25 Score=205.88 Aligned_cols=359 Identities=19% Similarity=0.217 Sum_probs=243.2
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEECC-C-HHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 958998865--889999999985899678999549-8-357511705512878989999999871897999979557874
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIPG-N-PGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~pg-N-~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
++|.|||+| ||.- +.+.++-..-..+ +.|. | |......+.+..+..|.+++.+|+++ .|.+-.-.|.- -.
T Consensus 8 ~tIGIlGgGQLgrMl--a~aA~~lG~~v~v-ldp~~~~PA~~va~~~~~~~~~D~~al~~fa~~--~DviT~E~EnI-~~ 81 (377)
T PRK06019 8 KTIGIIGGGQLGRML--ALAAAPLGYKVIV-LDPDADCPAAQVADRVIVADYDDVAALRELAEQ--CDVITYEFENV-PA 81 (377)
T ss_pred CEEEEECCCHHHHHH--HHHHHHCCCEEEE-ECCCCCCCHHHHCCEEEECCCCCHHHHHHHHHC--CCEEEECCCCC-CH
T ss_conf 999998786899999--9999978998999-848984984783784898688989999999845--99999781768-99
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEC-CCCCCCCCCC
Q ss_conf 899898605880670106665552010235788876531011112234401111121012420256304-6534300023
Q gi|254780206|r 77 GISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKAD-GLCAGKGVVV 155 (424)
Q Consensus 77 gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~-~~agGkGV~i 155 (424)
...+.|++. .+++ |+.++.++..||...|+|+.++|||||+|..+++.+++.++++++|||+|+|+. +..-|||+.+
T Consensus 82 ~~L~~le~~-~~v~-P~~~al~i~QdR~~eK~~l~~lgiptapf~~v~s~~dl~~~~~~lg~P~vlKt~~~GYDGKGq~~ 159 (377)
T PRK06019 82 EALDLLAAR-VPVP-PGPDALAIAQDRLTEKQFLDELGIPVAPFALVDSAEDLDAAIADLGLPAVLKTRRGGYDGKGQWV 159 (377)
T ss_pred HHHHHHHHC-CCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEE
T ss_conf 999999708-9668-79899998862799999999769998880671899999999997299769951334618870189
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 235677888788751445317778877520-57523442157-7631035200011135665444443443000012344
Q gi|254780206|r 156 AATVDEATSAIDRCFQQINSTVIIEEYLEG-FEVSFFALCDG-KTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMS 233 (424)
Q Consensus 156 ~~~~~e~~~~~~~~~~~~~~~VliEefl~G-~E~Sv~~i~dG-~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~ 233 (424)
+++.+|+.++++..- +.++++|+|++- .|+|+.+..+. .++..+|+++.+.+- +.. .-+++|++ ++
T Consensus 160 i~s~~dl~~a~~~l~---~~~~i~E~~i~f~~ElSvivaR~~~G~~~~yP~~en~h~~--gil------~~s~~Pa~-~~ 227 (377)
T PRK06019 160 LRSEADLDAAWAALG---SGPCILEEFVPFEREVSVIVARGRDGEVVFYPLVENVHRN--GIL------RTSIAPAP-IS 227 (377)
T ss_pred ECCHHHHHHHHHHCC---CCCEEEEEEECCEEEEEEEEEECCCCCEEEECCHHCEEEC--CEE------EEEECCCC-CC
T ss_conf 778889999998656---9988999654351899999998489999994441147777--755------89988999-99
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 32220100000899999862046235664454489855704899988651477510443326544115666542013333
Q gi|254780206|r 234 QELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNLHN 313 (424)
Q Consensus 234 ~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~L~~ 313 (424)
++..+++ +++...++++ +.|.|+|-++|-++++|.+|=|+.+|.-+----++-....|-|-..+-+++.--|.+
T Consensus 228 ~~~~~~a-~~ia~~i~~~-----l~~vGvl~VE~F~~~~~llvNEiAPRpHNSGH~Ti~~~~~SQFe~HlRAi~glpl~~ 301 (377)
T PRK06019 228 ADLQAQA-EEIASRIAEE-----LDYVGVLAVEFFVTGDGLLVNEIAPRVHNSGHWTIDACSTSQFEQHLRAIAGLPLGS 301 (377)
T ss_pred HHHHHHH-HHHHHHHHHH-----CCCCCEEEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 9999999-9999999997-----487624999999918938999725887687547642341248999999982998888
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCC-EEEEEEECCCHHHHHHHHH
Q ss_conf 212344442067542254466877579762487666898689983358778879981880-7999996289899999999
Q gi|254780206|r 314 THINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGR-VLSATALGKTITESRELAY 392 (424)
Q Consensus 314 ~~~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGR-VL~vv~~g~~l~eA~~~ay 392 (424)
+.+ ...+.|.-+|-...+|.. ..+ +....-..++|+ +-.+.-|| .-.++.+|+|.++|++++-
T Consensus 302 ~~~--~~pa~M~NilG~~~~~~~----~~~--~~~~~~~~h~Yg--------K~e~r~gRKmGHit~~~~~~~~~~~~~~ 365 (377)
T PRK06019 302 TEL--LSPAVMVNLLGDDVEPDW----DDL--LALPGAHLHWYG--------KAEARPGRKMGHVTVLGDDVEALLEKAE 365 (377)
T ss_pred CCC--CCCEEEEEEECCCCCHHH----HHH--HHCCCCEEEECC--------CCCCCCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 544--476699998377531369----999--719998899768--------9878899826899983199999999999
Q ss_pred HHHHCCCCC
Q ss_conf 998525899
Q gi|254780206|r 393 HMVENIDWK 401 (424)
Q Consensus 393 ~~i~~I~~~ 401 (424)
.....+.-+
T Consensus 366 ~~~~~l~~~ 374 (377)
T PRK06019 366 ALAALLPIE 374 (377)
T ss_pred HHHHHCCCC
T ss_conf 999765864
No 29
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.95 E-value=1.8e-25 Score=204.01 Aligned_cols=378 Identities=15% Similarity=0.195 Sum_probs=253.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC--C-C-HHHHHCCEEEEC-------CCCCHHHHHHHHHHHCCCEEEEC-
Q ss_conf 5899886588999999998589967899954--9-8-357511705512-------87898999999987189799997-
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP--G-N-PGIAQHAQCVAI-------DIQNHSAIIHFCQEKHIDLVVVG- 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p--g-N-~g~~~~~~~~~i-------~~~d~~~i~~~a~~~~iDlvivg- 69 (424)
||||---|--.-=+..++++- .+..|-+.. + + +......+.+.+ +..|.+.|++.|++.+.|.|.||
T Consensus 7 kvLIANRGEIA~Riirt~rel-gi~tVavys~~D~~~~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A~~~g~dAiHPGY 85 (458)
T PRK12833 7 TVLVANRGEIAVRVIRAAHEL-GMRAVAVVSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGY 85 (458)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEEECHHHCCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEECCC
T ss_conf 899977869999999999983-9989999185765583587499999828987001326999999999982999997686
Q ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf ---9557874899898605880670106665552010235788876531011112--23440111112101242025630
Q gi|254780206|r 70 ---PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 70 ---pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVKp 144 (424)
+|. +.++.+++++|+..+||+.++.+..+||..+|+++.+.|+|+.++. .+++.+++.++++++|||++|||
T Consensus 86 GFLSEn---a~FA~~~~~~gi~fIGPs~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~v~~~~ea~~~a~~iGyPv~iKA 162 (458)
T PRK12833 86 GFLSEN---AAFAAQVEAAGLIFVGPDAQVIATMGDKARARETARRAGVPTVPGSDGVVASLDAALEVAARIGYPVMIKA 162 (458)
T ss_pred CHHHHC---HHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 625529---99999999789989994999999850969999999984999668966766779999999986597542133
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHC-CCCCEEEECCCCCCCCCCC----CC-CCCCCCC
Q ss_conf 46534300023235677888788751445-----317778877520-5752344215776310352----00-0111356
Q gi|254780206|r 145 DGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEG-FEVSFFALCDGKTAIPFTT----AR-DHKRIHD 213 (424)
Q Consensus 145 ~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G-~E~Sv~~i~dG~~~~~l~~----~~-dyKr~~~ 213 (424)
+...||||+.++.+.+|+.++++.+..++ +..|++|+|+++ .++-++++.||.+++.|.. .| .|.++-|
T Consensus 163 s~GGGGrGmriv~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~~~vhl~eRdCSiQRr~QKviE 242 (458)
T PRK12833 163 AAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGENVVHLFERECSLQRRRQKILE 242 (458)
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEE
T ss_conf 25899871079526411489999999999972699764787613675079999985478769985025656567775588
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC-CE-EEEEEEEEEE--CCCCCE
Q ss_conf 6544444344300001234432220100000899999862046235664454489855-70-4899988651--477510
Q gi|254780206|r 214 GDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE-QG-PYLIEYNVRF--GDPECQ 289 (424)
Q Consensus 214 ~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~-~g-p~viE~N~R~--GDPE~q 289 (424)
.+|+|.+++++.+++. +.+++-.+. +.|.|.--++|++++ ++ .|+||+|+|+ --|=|+
T Consensus 243 ------------eaPsp~l~~~~r~~l~----~~a~~la~~--v~y~gagTvEFl~d~~~~~fyFlEvNtRlQVEH~VTE 304 (458)
T PRK12833 243 ------------EAPSPSLTPAQRDALC----ASATRLARA--VGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTE 304 (458)
T ss_pred ------------ECCCCCCCHHHHHHHH----HHHHHHHHH--CCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEH
T ss_conf ------------7799978999999998----899999885--3310000266678658896899962136444442122
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC---CCCCCCCCCEEEEEECCCCCCC---CCCCCCCCCCCCCCCC-CCEEEEEEEEE
Q ss_conf 443326544115666542013333---2123444420675422544668---7757976248766689-86899833587
Q gi|254780206|r 290 AMMMRLESDILEILNSCVHGNLHN---THINWKAEYALTVVVATKGYPE---EYPHGTIISKIPQNTG-TTQLFHAGTAI 362 (424)
Q Consensus 290 ~ilp~L~~dl~~il~~~~~g~L~~---~~~~~~~~~~v~Vvlas~GYP~---~~~kg~~I~~l~~~~~-~~~ifhagt~~ 362 (424)
.+ -.-||+...+.++.|.--. .++.+ .++++-+=+.+.. |. .+..| .|+.+....+ ++.+. .++
T Consensus 305 ~v---tGiDLV~~Qi~iA~G~~L~~~q~~i~~-~GhaIe~RI~AEd-p~~~f~Ps~G-~i~~~~~P~g~gvRvD-t~v-- 375 (458)
T PRK12833 305 AI---TGIDLVREMLRIADGEPLRFAQGDIAL-RGAALECRINAED-PLQDFRPNPG-RIDALVWPAGPGVRVD-SLL-- 375 (458)
T ss_pred HH---CCCCHHHHHHHHHCCCCCCCCHHCCCC-CCEEEEEEEECCC-CCCCCCCCCE-EEEEEECCCCCCEEEE-CCC--
T ss_conf 33---188599999999779977864210666-7508999752258-8778676883-8526863999988888-870--
Q ss_pred ECCEEEECC--CCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHHH
Q ss_conf 788799818--80799999628989999999999852589995753517898
Q gi|254780206|r 363 VNNNLTANG--GRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQ 412 (424)
Q Consensus 363 ~~g~l~t~G--GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~~ 412 (424)
..|..++.. +=+.-+++.|.|.++|..+..+.++.....| .+|.|.+-
T Consensus 376 ~~G~~v~~~yDsllaKlI~~g~~R~~Ai~rl~~aL~e~~I~G--v~TNi~~l 425 (458)
T PRK12833 376 YPGYAVPPFYDSLLAKLIVHDESRAAALARAARALEELRIDG--MKTTAPLH 425 (458)
T ss_pred CCCCCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHCCEEEC--CCCCHHHH
T ss_conf 277974887550430036888999999999999984479989--33879999
No 30
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.95 E-value=2e-25 Score=203.72 Aligned_cols=378 Identities=19% Similarity=0.253 Sum_probs=250.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECC---C-HHHHHCCEEEEC-------CCCCHHHHHHHHHHHCCCEEEEC-
Q ss_conf 58998865889999999985899678999549---8-357511705512-------87898999999987189799997-
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPG---N-PGIAQHAQCVAI-------DIQNHSAIIHFCQEKHIDLVVVG- 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pg---N-~g~~~~~~~~~i-------~~~d~~~i~~~a~~~~iDlvivg- 69 (424)
||||---|--.-=+..++++- .+..|-+... | +.....++.+.+ +..|.+.|++.|++.+.|.|.||
T Consensus 4 kvLIANRGEIA~RiiRt~~el-gi~tVavys~~D~~a~hv~~ADeav~ig~~~~~~sYln~~~Ii~~A~~~g~dAihPGY 82 (449)
T PRK08591 4 KILIANRGEIALRILRACKEL-GIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGY 82 (449)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEECCHHHCCCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEECCC
T ss_conf 488967849999999999984-9949998685752785288598889958988433304899999999982999897274
Q ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf ---9557874899898605880670106665552010235788876531011112--23440111112101242025630
Q gi|254780206|r 70 ---PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 70 ---pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVKp 144 (424)
+|.| .++..++++|+..+||+.++.+..+||..+|+++.++|+|+.++. .+++.+++.++++++|||++|||
T Consensus 83 GFLSEna---~FA~~~~~~Gi~fIGP~~~~i~~~GdK~~ar~~a~~agVPvvpgs~~~~~~~~ea~~~a~~iGyPv~iKA 159 (449)
T PRK08591 83 GFLSENA---DFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKA 159 (449)
T ss_pred CHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 2432589---9999999879999992999999876989999999983999788876655689999999987499669885
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEEECCCC-CCCCCC----CC-CCCCCCC
Q ss_conf 46534300023235677888788751445-----3177788775205-75234421577-631035----20-0011135
Q gi|254780206|r 145 DGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALCDGK-TAIPFT----TA-RDHKRIH 212 (424)
Q Consensus 145 ~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~i~dG~-~~~~l~----~~-~dyKr~~ 212 (424)
+...||||+.++++.+|+.++++.+-.++ +..|+||+|++.+ .+-|+++.|+. +++.|. .. |-|.++-
T Consensus 160 ~~GGGGrGmrvv~~~~el~~~~~~~~~Ea~~aFg~~~v~iEk~i~~~RHIEVQilgD~~Gn~vhl~eRdCSiQRR~QKvI 239 (449)
T PRK08591 160 TAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVL 239 (449)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEECCCCCCCHHHCCCEEE
T ss_conf 26898776999856789999999999999973799856787712565367899986389988987477567201461379
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEE--CCCCCEE
Q ss_conf 66544444344300001234432220100000899999862046235664454489855704899988651--4775104
Q gi|254780206|r 213 DGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRF--GDPECQA 290 (424)
Q Consensus 213 ~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~--GDPE~q~ 290 (424)
|. +|+|.+++++.+++ .+..++..+. +.|+|.--++|++.++..|.||.|+|+ --|=|+.
T Consensus 240 EE------------aPap~l~~~~r~~m----~~~A~~la~~--v~Y~~aGTvEFL~d~~~fyFlEmNtRlQVEHpVTE~ 301 (449)
T PRK08591 240 EE------------APSPAITEELRRKI----GEAAVKAAKA--IGYRGAGTIEFLYENGEFYFIEMNTRIQVEHPVTEM 301 (449)
T ss_pred EE------------CCCCCCCHHHHHHH----HHHHHHHHHH--CCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCHH
T ss_conf 97------------79987899999999----9999999997--496421038999978908999624341245652266
Q ss_pred EEECCCCCCHHHHHHHHHCCCC---CCCCCCCCCCEEEEEECCCCCCCCC--CCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 4332654411566654201333---3212344442067542254466877--5797624876668986899833587788
Q gi|254780206|r 291 MMMRLESDILEILNSCVHGNLH---NTHINWKAEYALTVVVATKGYPEEY--PHGTIISKIPQNTGTTQLFHAGTAIVNN 365 (424)
Q Consensus 291 ilp~L~~dl~~il~~~~~g~L~---~~~~~~~~~~~v~Vvlas~GYP~~~--~kg~~I~~l~~~~~~~~ifhagt~~~~g 365 (424)
.-.-||+...+.++.|.-- ..++++ .++++-+=+.+.. |..+ ..|. |+.+....+...-.-+++ ..|
T Consensus 302 ---vtGiDLV~~Qi~iA~G~~L~~~q~~i~~-~GhAIE~Ri~AEd-P~~f~Ps~G~-i~~~~~P~g~gvRvDt~~--~~G 373 (449)
T PRK08591 302 ---ITGVDLVKEQIRIAAGEPLSIKQEDIVF-RGHAIECRINAED-PKNFMPSPGK-ITRYHPPGGPGVRVDSHV--YTG 373 (449)
T ss_pred ---HHCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCHHEEECCCC-CCCCCCCCEE-EEEEECCCCCCEEEECCC--CCC
T ss_conf ---5077199999998679999977100675-7611210101358-4546788727-879974899988995881--568
Q ss_pred EEEEC--CCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHH
Q ss_conf 79981--88079999962898999999999985258999575351789
Q gi|254780206|r 366 NLTAN--GGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 (424)
Q Consensus 366 ~l~t~--GGRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~ 411 (424)
..++. -+=+.-+++.|.|.++|..+..++++.....|. ++-|.+
T Consensus 374 ~~v~~~YDsmlaKlI~~g~~R~~Ai~rl~~AL~e~~I~Gv--~TN~~~ 419 (449)
T PRK08591 374 YTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDGI--KTTIPL 419 (449)
T ss_pred CEECCCCCCHHCEEEEECCCHHHHHHHHHHHHHCCEEECC--CCCHHH
T ss_conf 9848874553203889789999999999999736699796--686999
No 31
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=99.95 E-value=2.5e-25 Score=203.01 Aligned_cols=380 Identities=14% Similarity=0.195 Sum_probs=248.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC---CC-HHHHHCCEEEEC------CCCCHHHHHHHHHHHCCCEEEEC--
Q ss_conf 5899886588999999998589967899954---98-357511705512------87898999999987189799997--
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP---GN-PGIAQHAQCVAI------DIQNHSAIIHFCQEKHIDLVVVG-- 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p---gN-~g~~~~~~~~~i------~~~d~~~i~~~a~~~~iDlvivg-- 69 (424)
||||---|--.-=+..++++-. +..|-+.. .| +.....++.+.+ +..|.+.|++.|++.+.|.+.||
T Consensus 4 kvLIANRGEIA~RiiRt~~elg-i~tVavys~~D~~a~hv~~ADea~~ig~~~~~sYln~~~Ii~~A~~~g~dAiHPGYG 82 (471)
T PRK07178 4 KILIANRGEIAVRIVRACAEMG-IRSVAIYSEADRHALHVKRADEAHSIGADPLAGYLNPRKLVNLAVETGCDALHPGYG 82 (471)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEECHHHCCCHHHHHCCEEEECCCCHHHHHCCHHHHHHHHHHHCCCEEECCCC
T ss_conf 0899778699999999999839-948999083756683688488888718872665449999999999969999977833
Q ss_pred --CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf --9557874899898605880670106665552010235788876531011112--234401111121012420256304
Q gi|254780206|r 70 --PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVKAD 145 (424)
Q Consensus 70 --pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVKp~ 145 (424)
+|.| .++.+++++|+..+||+.++.+..+||..+|+++.++|+|+.++. .+++.+++.++++++|||++|||.
T Consensus 83 FLSEn~---~FA~~~~~~gi~FIGPs~~~i~~~GdK~~ar~~a~~~gvPv~pgs~~~v~~~eea~~~A~~iGyPV~lKAa 159 (471)
T PRK07178 83 FLSENA---ELAEICAERGIKFIGPSADVIRRMGDKTEARRSMIKAGVPVTPGSEGNLADIDEALAEAERIGYPVMLKAT 159 (471)
T ss_pred HHHCCH---HHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 311598---99999997899899959999998748398999999869982689688656699999999866981586320
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHC-CCCCEEEECCCC-CCCCCC----CCC-CCCCCCC
Q ss_conf 6534300023235677888788751445-----317778877520-575234421577-631035----200-0111356
Q gi|254780206|r 146 GLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEG-FEVSFFALCDGK-TAIPFT----TAR-DHKRIHD 213 (424)
Q Consensus 146 ~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G-~E~Sv~~i~dG~-~~~~l~----~~~-dyKr~~~ 213 (424)
...||||+.++++.+|+.++++.+..++ +..|+||+|+.. .++-++++.||. +++.|. ..| -|.++-|
T Consensus 160 ~GGGGrGmrvv~~~~el~~~~~~~~~EA~~aFg~~~v~lEk~i~~~RHIEVQilgD~~Gnvihl~eRdCSiQRr~QKvIE 239 (471)
T PRK07178 160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSFGNVVHLFERDCSIQRRNQKLIE 239 (471)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEE
T ss_conf 26876644997660568899999999999844997368766046762899999980789888884123465107873278
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEE
Q ss_conf 65444443443000012344322201000008999998620462356644544898557048999886514775104433
Q gi|254780206|r 214 GDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMM 293 (424)
Q Consensus 214 ~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp 293 (424)
.+|+|.+++++.+++.+ .+++-.+. +.|.|.--++|++.++..|+||+|+|+- .|--+-=.
T Consensus 240 ------------eaPa~~l~~~~r~~l~~----~A~~la~~--v~Y~gaGTvEFlv~~~~~yFlEvNtRlQ-VEH~VTE~ 300 (471)
T PRK07178 240 ------------IAPSPQLTPEQRAYIGD----LAVRAAKA--VGYENAGTVEFLLADGEVYFMEMNTRVQ-VEHTITEE 300 (471)
T ss_pred ------------ECCCCCCCHHHHHHHHH----HHHHHHHH--CCCCEEEEEEEEEECCCEEEEECCCCCC-CCCCHHHH
T ss_conf ------------76999888999999988----99999996--4865012699998679479983246665-55421366
Q ss_pred CCCCCCHHHHHHHHHCCCC---CCCCCCCCCCEEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCEEEEEEEEEECCEE
Q ss_conf 2654411566654201333---321234444206754225446687---7579762487666898689983358778879
Q gi|254780206|r 294 RLESDILEILNSCVHGNLH---NTHINWKAEYALTVVVATKGYPEE---YPHGTIISKIPQNTGTTQLFHAGTAIVNNNL 367 (424)
Q Consensus 294 ~L~~dl~~il~~~~~g~L~---~~~~~~~~~~~v~Vvlas~GYP~~---~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l 367 (424)
.-.-||+...+.++.|.-- ..++.+ +++++-.=+.+.. |.+ +..|. |+.+....+...-+.+++ ..|..
T Consensus 301 vtGiDLV~~Qi~iA~G~~L~~~q~~i~~-~GhAIe~Ri~AED-p~~~F~Ps~G~-i~~~~~P~g~gvR~Dt~~--~~G~~ 375 (471)
T PRK07178 301 ITGIDIVREQIRIASGLPLSVKQEDIQH-RGFALQFRINAED-PKNNFLPSFGK-ITRYYAPGGPGVRTDTAI--YTGYT 375 (471)
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCEEEEEEECCC-CCCCCCCCCCE-EEEEECCCCCCEEEECCC--CCCCE
T ss_conf 6167589999998679978831024455-8858999985137-76686568725-778976999988986677--68896
Q ss_pred EECC--CCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHH
Q ss_conf 9818--8079999962898999999999985258999575351789
Q gi|254780206|r 368 TANG--GRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 (424)
Q Consensus 368 ~t~G--GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~ 411 (424)
++.. +=+.-+++.|.|.++|..+..+.++.....|. .|.|.+
T Consensus 376 v~~~yDsmlaKli~~g~~R~~Ai~rl~~aL~e~~I~Gv--~Tni~~ 419 (471)
T PRK07178 376 IPPYYDSMCLKLIVWALTWEEALDRGLRALDDMRVQGV--KTTAPY 419 (471)
T ss_pred ECCCCCCHHHHHEEECCCHHHHHHHHHHHHHCCEEECC--CCCHHH
T ss_conf 18874425361048889999999999998626599794--686999
No 32
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase; InterPro: IPR005905 D-alanine--D-alanine ligase (6.3.2.4 from EC) is a bacterial enzyme involved in cell-wall biosynthesis. It participates in forming UDP-N-acetylmuramoyl pentapeptide, the peptidoglycan precursor. These enzymes are proteins of 300 to 360 amino acids containing many conserved regions. The N-terminal Gly-rich region could be involved in ATP-binding. This family of enzymes represent chromosomal versions of species not specifically resistant to glycopeptide antibiotics such as vancomycin. The mechanism of glycopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). This model attempts to exclude the VanA/VanB and VanC subfamilies while capturing most other D-Ala-D-Ala ligases above the trusted cut-off. However, changes in small numbers of amino acids, as demonstrated crystallographically, can alter specificity. In chlamydial species, this enzyme is found as a fusion protein with UDP-N-acetylmuramate--alanine ligase. ; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005737 cytoplasm.
Probab=99.94 E-value=1.9e-26 Score=211.21 Aligned_cols=232 Identities=20% Similarity=0.315 Sum_probs=173.1
Q ss_pred HCCCEEEE---CC-CHHHHHH-HHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC--CCCHHHH---
Q ss_conf 18979999---79-5578748-9989860588067010666555201023578887653101111223--4401111---
Q gi|254780206|r 61 KHIDLVVV---GP-ELPLVNG-ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHF--SDPMKAK--- 130 (424)
Q Consensus 61 ~~iDlviv---gp-E~pL~~g-i~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~--~~~~ea~--- 130 (424)
..+|.||+ || -= -+| |...|+-+|||+.||.-.|+.+..||.+||.++++.|||||+|..+ .+.....
T Consensus 105 ~~~D~vF~~LHG~~~G--EDGtiQGlLe~~gIPY~Gsgv~aSA~smDK~~tK~~~~~~Glp~~~y~~l~~~~~~~~~~~~ 182 (375)
T TIGR01205 105 EEIDVVFPVLHGPPYG--EDGTIQGLLELLGIPYTGSGVLASALSMDKLLTKLLLKSLGLPTPDYAVLRRKERSSEDEAE 182 (375)
T ss_pred CCCCEEEEEECCCCCC--CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 4798899812185668--55528999997078703747899998742899999998757974470467504544561346
Q ss_pred ----HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHCCCCCEEEECCCCCCCCC-
Q ss_conf ----1210124202563046534300023235677888788751445317778877---52057523442157763103-
Q gi|254780206|r 131 ----QYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEY---LEGFEVSFFALCDGKTAIPF- 202 (424)
Q Consensus 131 ----~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEef---l~G~E~Sv~~i~dG~~~~~l- 202 (424)
..++.+|||++|||..+.+|-||.+|.+++|+..+++.+| ..+.+||||+| |.|+|++|.+|-+++.+..+
T Consensus 183 ~~~~~~~~~lg~P~~VKPa~~GSSvG~~~V~~~~eL~~a~~~Af-~~d~~v~vE~~~~~i~grEl~v~~L~~~~~lp~~~ 261 (375)
T TIGR01205 183 CENVAVLEKLGFPVFVKPAREGSSVGISKVKSEEELEAALDEAF-KYDERVIVEEFKQRIKGRELEVSILGNEEALPIIS 261 (375)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 89999998368978997346777577898467789999999861-55965999811147898526898870797432454
Q ss_pred --C--C------CCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC
Q ss_conf --5--2------00011135665444443443000012-34432220100000899999862046235664454489855
Q gi|254780206|r 203 --T--T------ARDHKRIHDGDIGPNTGGMGACSPAL-GMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE 271 (424)
Q Consensus 203 --~--~------~~dyKr~~~~d~GpnTGGMGa~~p~~-~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~ 271 (424)
+ . --||+..|..+.|-+. ..|++ .++++..+++ -+-.+++.+..++ +|...+|||+++
T Consensus 262 ~~~~~~~~g~~~FYDY~~KY~~~~g~~~-----~~pa~~~L~~~~~~~i----~~~a~~ay~~~~~--~G~~R~DFf~~~ 330 (375)
T TIGR01205 262 IVPEIEPDGGSDFYDYEAKYLDGDGTEY-----VIPAPAGLDEELEEKI----KELALKAYKALGC--RGLARVDFFLDK 330 (375)
T ss_pred CCCCCCCCCCCEECCHHHCCCCCCCCEE-----EECCCCCCCHHHHHHH----HHHHHHHHHHCCC--CCEEEEEEEEEC
T ss_conf 0675356767600002114277887326-----5156567888999999----9999999984088--744899899872
Q ss_pred C-E-EEEEEEEEEECCCCCEEEEECCCC----CCHHHHHHHH
Q ss_conf 7-0-489998865147751044332654----4115666542
Q gi|254780206|r 272 Q-G-PYLIEYNVRFGDPECQAMMMRLES----DILEILNSCV 307 (424)
Q Consensus 272 ~-g-p~viE~N~R~GDPE~q~ilp~L~~----dl~~il~~~~ 307 (424)
+ | +|++|+|+=.| ..+-.+.|.+-. +|-+|+..++
T Consensus 331 ~~G~~yLnEiNT~PG-mT~~Sl~P~~~~~~G~~f~~Lv~~~~ 371 (375)
T TIGR01205 331 ETGEIYLNEINTIPG-MTAISLFPKAAAAAGLEFEQLVERIL 371 (375)
T ss_pred CCCEEEEEEECCCCC-CCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 888699998768888-72012699999971888789999999
No 33
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.94 E-value=3e-26 Score=209.71 Aligned_cols=233 Identities=21% Similarity=0.261 Sum_probs=168.2
Q ss_pred HHHCCCEEEE---C--CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHH---H
Q ss_conf 8718979999---7--955787489989860588067010666555201023578887653101111223440111---1
Q gi|254780206|r 59 QEKHIDLVVV---G--PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKA---K 130 (424)
Q Consensus 59 ~~~~iDlviv---g--pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea---~ 130 (424)
...++|++++ | -|+=- +...|+..|||..|++..++.|..||..+|.+|+++|||||+|..++..+.. .
T Consensus 87 ~~~~~D~vf~alHG~~GEDG~---iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~ 163 (344)
T PRK01966 87 LIIEVDVVFPVLHGPPGEDGT---IQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTRSRREEAIA 163 (344)
T ss_pred CCCCCCEEEEECCCCCCCCHH---HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHH
T ss_conf 035678999906899976709---99999975999368848999987669999999998799989839981666234589
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC----
Q ss_conf 1210124202563046534300023235677888788751445317778877520575234421577631035200----
Q gi|254780206|r 131 QYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTAR---- 206 (424)
Q Consensus 131 ~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~---- 206 (424)
.....++||++|||....++.||.++++.+|+.++++.+|. .+++|||||||+|.|++|-++-++.....+|+.+
T Consensus 164 ~~~~~l~~P~iVKP~~~GSSiGvs~v~~~~el~~ai~~a~~-~~~~vlvEefI~GrE~tv~vl~~~~~~~~l~~~Ei~~~ 242 (344)
T PRK01966 164 EVEEKLGLPVFVKPANLGSSVGISKVKNEEELEAALDLAFE-YDRKVLVEQGIKGREIECAVLGYNDEPVASVPGEIVKD 242 (344)
T ss_pred HHHHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHH-CCCCCEEECCCCCEEEEEEEECCCCCEEEECCEEECCC
T ss_conf 99986189879932899634325996899999999999986-39750575124448999999748994677311587179
Q ss_pred ----CCCCCCCCCCCCCCCCCCE-EECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEE
Q ss_conf ----0111356654444434430-000123443222010000089999986204623566445448985570-4899988
Q gi|254780206|r 207 ----DHKRIHDGDIGPNTGGMGA-CSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYN 280 (424)
Q Consensus 207 ----dyKr~~~~d~GpnTGGMGa-~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N 280 (424)
||+..|. ++|... ++|++ +++++.++ +-+-+.++.+..|+ +|+..+|||++++| ||+||+|
T Consensus 243 ~~fydy~~KY~------~~~~~~~~~Pa~-l~~~~~~~----i~~~a~~~~~~lg~--rg~~RiDf~~d~~g~~y~lEvN 309 (344)
T PRK01966 243 NDFYDYEAKYI------DDSGATLVIPAD-LSEELTEQ----IRELAIKAFKALGC--SGLARVDFFLTEDGEIYLNEIN 309 (344)
T ss_pred CCCCCHHHCCC------CCCCCEEECCCC-CCHHHHHH----HHHHHHHHHHHHCC--CCEEEEEEEEECCCCEEEEEEE
T ss_conf 87514888104------689716966788-99999999----99999999998199--7279898999089988999820
Q ss_pred EEECCCCCEEEEECC----CCCCHHHHHHHHHC
Q ss_conf 651477510443326----54411566654201
Q gi|254780206|r 281 VRFGDPECQAMMMRL----ESDILEILNSCVHG 309 (424)
Q Consensus 281 ~R~GDPE~q~ilp~L----~~dl~~il~~~~~g 309 (424)
+=.|= ....++|.+ .-++-+++..+++.
T Consensus 310 t~PGm-T~~Sl~p~~a~~~G~s~~~li~~ii~~ 341 (344)
T PRK01966 310 TLPGF-TPISMYPKLWEASGLSYPELIDRLIEL 341 (344)
T ss_pred CCCCC-CCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 89998-754789999998099999999999999
No 34
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=99.94 E-value=2.4e-24 Score=195.99 Aligned_cols=380 Identities=15% Similarity=0.215 Sum_probs=246.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC---CCH-HHHHCCEEEEC------CCCCHHHHHHHHHHHCCCEEEEC--
Q ss_conf 5899886588999999998589967899954---983-57511705512------87898999999987189799997--
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP---GNP-GIAQHAQCVAI------DIQNHSAIIHFCQEKHIDLVVVG-- 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p---gN~-g~~~~~~~~~i------~~~d~~~i~~~a~~~~iDlvivg-- 69 (424)
||||---|--.-=+..++.+- .+..|-+.. .+. ......+.+.+ +..|.+.|++.|++.+.|.+.||
T Consensus 4 kvLIANRGEIA~Riirt~rel-gi~tVavys~~D~~s~hv~~Adea~~lg~~~~~sYLn~~~Ii~~A~~~gadAiHPGYG 82 (478)
T PRK08463 4 KILIANRGEIAVRIIRACRDL-HIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYG 82 (478)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEEECHHHCCCCHHHHCCEEEECCCCHHHHHCCHHHHHHHHHHHCCCEEECCCC
T ss_conf 178966869999999999983-9978999785765783477578766528873453069999999999849999936876
Q ss_pred --CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC-C--CCCCHHHHHHHHCCCCEEEEEE
Q ss_conf --9557874899898605880670106665552010235788876531011112-2--3440111112101242025630
Q gi|254780206|r 70 --PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ-H--FSDPMKAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 70 --pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~-~--~~~~~ea~~~~~~~g~PvVVKp 144 (424)
+|.| .++..++++|+..+||+.++.+..+||.-+|++|.++|+|+.++. . .++.+++.++++++|||+++|+
T Consensus 83 FLSEna---~FA~~~~~~Gi~FIGPs~~~i~~~GdK~~Ar~~a~~~gVPvvpg~~~~~~~~~~~~~~~a~~iGyPv~lKA 159 (478)
T PRK08463 83 FLSENY---EFAKAVEDAGLIFIGPKSEVIRKMGNKNIARKLMAKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159 (478)
T ss_pred CCCCCH---HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 234699---99999997899899949999999864899999999839984667677887679999999986598047840
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEEECCCC-CCCCCCC----C-CCCCCCC
Q ss_conf 46534300023235677888788751445-----3177788775205-75234421577-6310352----0-0011135
Q gi|254780206|r 145 DGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALCDGK-TAIPFTT----A-RDHKRIH 212 (424)
Q Consensus 145 ~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~i~dG~-~~~~l~~----~-~dyKr~~ 212 (424)
....||||+.++++.+|+.++++.+..++ ++.|++|+|++.+ .+-++++.|+. +++.|.. . +-|.++-
T Consensus 160 ~~GGGGrGmrvv~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RHiEVQvlgD~~Gnvi~l~eRdCSiQRr~QKvi 239 (478)
T PRK08463 160 SGGGGGRGIRVVWKEEDLENAFESCKREAKAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239 (478)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCEEE
T ss_conf 35999871178557899999999999999984699854788750245178999986179978896305134334675168
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEECCCCCEEE
Q ss_conf 6654444434430000123443222010000089999986204623566445448985570-489998865147751044
Q gi|254780206|r 213 DGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQAM 291 (424)
Q Consensus 213 ~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~GDPE~q~i 291 (424)
| .+|+|.+++++.+++ .+.+++..+. +.|.|.--++|+++++| .|+||.|+|+= .|--+-
T Consensus 240 E------------eaPap~l~~~~r~~m----~~~A~~la~~--v~Y~~aGTvEFL~d~~~~fyFlEmNtRlQ-VEHpVT 300 (478)
T PRK08463 240 E------------IAPCPGISDNLRKTM----GVTAVAAAKA--VGYTNAGTIEFLLDDYNNFYFMEMNTRIQ-VEHGVT 300 (478)
T ss_pred E------------ECCCCCCCHHHHHHH----HHHHHHHHHH--CCCCCCCEEEEEECCCCCEEEEEEECCCC-CCCCCC
T ss_conf 9------------669998788999999----8899876663--05166533898883899789996075545-566541
Q ss_pred EECCCCCCHHHHHHHHHCCC---CCCCCCCCCCCEEEEEECCCCCCC---CCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 33265441156665420133---332123444420675422544668---775797624876668986899833587788
Q gi|254780206|r 292 MMRLESDILEILNSCVHGNL---HNTHINWKAEYALTVVVATKGYPE---EYPHGTIISKIPQNTGTTQLFHAGTAIVNN 365 (424)
Q Consensus 292 lp~L~~dl~~il~~~~~g~L---~~~~~~~~~~~~v~Vvlas~GYP~---~~~kg~~I~~l~~~~~~~~ifhagt~~~~g 365 (424)
=..-.-||+..-+.++.|.. ...++.+ .++++-+=+.+.. |. .+..|. |+.+....+...-+.+++ ..|
T Consensus 301 E~vTGvDLV~~Qi~iA~G~~L~~~q~~i~~-~GhAIE~RI~AEd-p~~~F~Ps~G~-i~~~~~p~g~gvRvDs~~--~~G 375 (478)
T PRK08463 301 EEITGIDLIVRQIRIAAGEILDLEQSDIKP-RGFAIEARITAEN-VWKNFIPSPGK-ITGYYPALGPSVRVDSHI--YKD 375 (478)
T ss_pred CEECCCCHHHHHHHHHCCCCCCCCCCCCCC-CCEEEEEEEECCC-CCCCCCCCCEE-EEEEECCCCCCEEEECCC--CCC
T ss_conf 100388689999998679988854003466-7459999985147-76674658748-878972899998980886--786
Q ss_pred EEEECC--CCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHH
Q ss_conf 799818--8079999962898999999999985258999575351789
Q gi|254780206|r 366 NLTANG--GRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 (424)
Q Consensus 366 ~l~t~G--GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~ 411 (424)
..++.- +=+.-+++.|.|.++|..+..+.++.....|. +|.|.+
T Consensus 376 ~~v~~~yDsmiaKlI~~g~~R~~Ai~rl~~AL~e~~I~Gv--~Tni~~ 421 (478)
T PRK08463 376 YTIPPFYDSMLAKLIVKATSYDLAVNKLERALKEFTIEGV--RTTIPF 421 (478)
T ss_pred CCCCCCCCHHHCEEEEECCCHHHHHHHHHHHHHCCEEECC--CCCHHH
T ss_conf 9808975704534889889999999999999726699895--585999
No 35
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.94 E-value=1.5e-24 Score=197.52 Aligned_cols=363 Identities=19% Similarity=0.256 Sum_probs=235.4
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCH
Q ss_conf 958998865--88999999998589967899954983575----117055128789899999998718979999--7955
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPEL 72 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~ 72 (424)
|+|..-+-| .+-.| |.+|+++.. .|.....||.+. ..++.+++.+...+.+.++++++++|.+++ |.+.
T Consensus 6 i~Igqa~efdysG~qa-c~aLkeeg~--~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt 82 (400)
T COG0458 6 IVIGQAAEFDYSGTQA-CKALKEEGY--GVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQT 82 (400)
T ss_pred EEEEEEEEECHHHHHH-HHHHHHCCC--EEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 0667641114367899-999986697--5999728872124780005302662473788999997537662632468741
Q ss_pred HHHHH--HHH--HHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 78748--998--98605880670106665552010235788876531011112234401111121012420256304653
Q gi|254780206|r 73 PLVNG--ISD--ALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLC 148 (424)
Q Consensus 73 pL~~g--i~d--~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~a 148 (424)
+|-.. +.+ .|++.|++++|.+.++.++..||..+|++|++.|+|+| ....++.+++.++.+++|||+||||....
T Consensus 83 ~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~l 161 (400)
T COG0458 83 ALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGL 161 (400)
T ss_pred HHHHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 34688998772645644977994587895564209999999998399988-41235677776557636997798068578
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHCC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4300023235677888788751445-3177788775205-7523442157763103520001113566544444344300
Q gi|254780206|r 149 AGKGVVVAATVDEATSAIDRCFQQI-NSTVIIEEYLEGF-EVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGAC 226 (424)
Q Consensus 149 gGkGV~i~~~~~e~~~~~~~~~~~~-~~~VliEefl~G~-E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~ 226 (424)
||.|+.+++|.+|+.+.....+..+ .++||+||++.|. |+...+..|++.-.+...... +. ...|..||--...
T Consensus 162 GG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~me--n~--dp~gvhtgdsi~v 237 (400)
T COG0458 162 GGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNME--NL--DPMGVHTGDSITV 237 (400)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEECC--CC--CCCCCCCCCEEEE
T ss_conf 8875168718999999987322447642001244216856999999983799879998678--65--6566444323652
Q ss_pred ECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE--EEEEEEEEEECCCCCEEEEECCCCCCHHHHH
Q ss_conf 00123443222010000089999986204623566445448985570--4899988651477510443326544115666
Q gi|254780206|r 227 SPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG--PYLIEYNVRFGDPECQAMMMRLESDILEILN 304 (424)
Q Consensus 227 ~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g--p~viE~N~R~GDPE~q~ilp~L~~dl~~il~ 304 (424)
+|+..+++...+-. +. -.++.++..++. |-..+|+.+.+++ .+|||+|+|++-- .-|+.--+. +++..
T Consensus 238 apaqtl~d~eyq~~-r~---~~~~iir~igi~--G~~niQ~av~~~~~~~~viEvNpRvSrs---saLaskAtg-ypia~ 307 (400)
T COG0458 238 APAQTLTDKEYQML-RD---AAIKVIREIGIE--GGCNIQFAVDPGGGELYVIEINPRVSRS---SALASKATG-YPIAK 307 (400)
T ss_pred CCCCCCCCHHHHHH-HH---HHHHHHHHHCCC--CCCCEEEEECCCCCEEEEEEECCCCCCC---CHHHHHCCC-CHHHH
T ss_conf 14556543788998-88---777788874114--7873148986998559999956876764---031554468-76999
Q ss_pred H---HHHC-CCCCCCCCCCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEE
Q ss_conf 5---4201-3333212344442067542254466-877579762487666898689983358778879981880799999
Q gi|254780206|r 305 S---CVHG-NLHNTHINWKAEYALTVVVATKGYP-EEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATA 379 (424)
Q Consensus 305 ~---~~~g-~L~~~~~~~~~~~~v~Vvlas~GYP-~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGRVL~vv~ 379 (424)
- .+-| .|+++. +.- +. .+++ ..+..+.+...++.- ...+.+++ -........+ .|+| .+
T Consensus 308 vaakla~g~~l~Ei~----n~i--t~----~t~a~fePsldyvv~k~pr~-~f~kf~~~-~~~l~~~mks-~gev---m~ 371 (400)
T COG0458 308 VAAKLAVGYTLDEIR----NDI--TG----RTPASFEPSLDYVVTKIPRF-DFEKFPGA-DRRLGTQMKS-VGEV---MA 371 (400)
T ss_pred HHHHHHCCCCCHHHC----CCC--CC----CCCCCCCCCCCEEEEECCCC-CCCCCCCC-CCCEEEEEEC-CCEE---EE
T ss_conf 999750356706544----766--44----43444577666036634778-73213455-6331002300-1028---99
Q ss_pred ECCCHHHHHHHHHHHHHC
Q ss_conf 628989999999999852
Q gi|254780206|r 380 LGKTITESRELAYHMVEN 397 (424)
Q Consensus 380 ~g~~l~eA~~~ay~~i~~ 397 (424)
.|.|+++|..+|.+.++.
T Consensus 372 igr~f~eal~ka~~~l~~ 389 (400)
T COG0458 372 IGRTFEEALQKALRSLEI 389 (400)
T ss_pred ECCHHHHHHHHHHHHHCC
T ss_conf 631299999999986114
No 36
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.93 E-value=1.5e-23 Score=190.15 Aligned_cols=374 Identities=20% Similarity=0.296 Sum_probs=249.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC---CCH-HHHHCCEEEEC--------CCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 5899886588999999998589967899954---983-57511705512--------87898999999987189799997
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP---GNP-GIAQHAQCVAI--------DIQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p---gN~-g~~~~~~~~~i--------~~~d~~~i~~~a~~~~iDlvivg 69 (424)
||||---|--.--+..++.+- .+..|-+.. .+. .....++.+.+ ...|.+.|++.|++.+.|.+.||
T Consensus 7 kvLiANRGEIA~Ri~Ra~~el-gi~tVavys~~D~~s~h~~~ADea~~ig~~~~p~~sYL~~~~ii~~A~~~~~dAiHPG 85 (1147)
T PRK12999 7 KVLVANRGEIAIRIFRAATEL-GIRTVAIYSEEDKLSLHRFKADEAYLIGEGKGPIEAYLDIDEIIRVAKQAGVDAIHPG 85 (1147)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEEECHHHCCCHHHHHCCEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCEEECC
T ss_conf 899966819999999999983-9958999784645782588588567728999713111299999999999498999779
Q ss_pred ----CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEE
Q ss_conf ----9557874899898605880670106665552010235788876531011112--2344011111210124202563
Q gi|254780206|r 70 ----PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVK 143 (424)
Q Consensus 70 ----pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVK 143 (424)
+|.+ .++.+++++||..+||+.++.++.+||..+|+++.++|+|+.++. .+++.+++.++++++|||++||
T Consensus 86 YGFLSEn~---~Fa~~~~~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~~~~~~~~~~~a~~iGyPv~iK 162 (1147)
T PRK12999 86 YGFLSENP---EFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGTEGPIDDLEEALEFAEEIGYPLMLK 162 (1147)
T ss_pred CCHHHCCH---HHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 62200799---999999987899989499999985599999999998398988898998899999999998719978999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEEECCCC-CCCCCCC----C-CCCCCC
Q ss_conf 046534300023235677888788751445-----3177788775205-75234421577-6310352----0-001113
Q gi|254780206|r 144 ADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALCDGK-TAIPFTT----A-RDHKRI 211 (424)
Q Consensus 144 p~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~i~dG~-~~~~l~~----~-~dyKr~ 211 (424)
++...||||++++++.+|+.++++.+..++ +..|.+|+|++.+ -+-|+++.|+. +++.|.. . |-|.++
T Consensus 163 A~~GGGGrGmrvv~~~~~l~~~~~~a~~EA~~aFG~~~v~~Ek~i~~~rHiEvQilgD~~Gnvvhl~eRdCSiQRR~QKv 242 (1147)
T PRK12999 163 ASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242 (1147)
T ss_pred ECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEECCCCCCHHHCCCEE
T ss_conf 77789805148958989999999999999998369975688550367864799999628898887147656432235135
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEECCCCCEE
Q ss_conf 56654444434430000123443222010000089999986204623566445448985570-48999886514775104
Q gi|254780206|r 212 HDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQA 290 (424)
Q Consensus 212 ~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~GDPE~q~ 290 (424)
-| .+|+|.+++++.+++ .+..++..+..| |+|.=-++|+++.+| .|.||.|+|+- .|--+
T Consensus 243 iE------------eaPap~l~~~~r~~l----~~~A~~~a~~v~--Y~~aGTvEFL~d~~~~fyFiE~N~RlQ-VEH~V 303 (1147)
T PRK12999 243 VE------------IAPAPGLSPELREEI----CEAAVKLARAVG--YVNAGTVEFLVDADGNFYFIEVNPRIQ-VEHTV 303 (1147)
T ss_pred EE------------ECCCCCCCHHHHHHH----HHHHHHHHHHCC--CCCCCEEEEEECCCCCEEEEEEECCCC-CCCCC
T ss_conf 78------------668999999999999----999999999769--764322789983888789998665656-45653
Q ss_pred EEECCCCCCHHHHHHHHHCC-CCCCC--------CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---
Q ss_conf 43326544115666542013-33321--------2344442067542254466877579762487666898689983---
Q gi|254780206|r 291 MMMRLESDILEILNSCVHGN-LHNTH--------INWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHA--- 358 (424)
Q Consensus 291 ilp~L~~dl~~il~~~~~g~-L~~~~--------~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifha--- 358 (424)
-=..-.-||+..-+.++.|. |.... +.. .++++-+=+.++. | ..+. .| ..+.+..|+.
T Consensus 304 TE~vtGiDlV~~Qi~iA~G~~L~~~~~~~~~Q~~i~~-~G~Aie~Ri~aEd-p---~~~F----~P-~~G~i~~~~~p~G 373 (1147)
T PRK12999 304 TEMVTGIDIVQSQILIAEGATLGDLEVGIPSQEDIRL-RGHAIQCRITTED-P---ANNF----MP-DTGRITAYRSPGG 373 (1147)
T ss_pred HHHEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CEEEEEEEEEECC-C---CCCC----CC-CCCEEEEEECCCC
T ss_conf 0210155089999998579975667678775446776-6489999986117-7---5256----78-8774037846999
Q ss_pred -EEEEECCEEEECCC--------CEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCHHHH
Q ss_conf -35877887998188--------079999962898999999999985258999575351789
Q gi|254780206|r 359 -GTAIVNNNLTANGG--------RVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 (424)
Q Consensus 359 -gt~~~~g~l~t~GG--------RVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~ 411 (424)
|+..+.|..+ .|. =+.-+++.|.|.++|..+..+++...+..|. .+-|.+
T Consensus 374 ~gvR~D~g~~~-~G~~v~p~yDsllaK~i~~g~~r~~ai~r~~raL~e~~i~Gv--~Tni~f 432 (1147)
T PRK12999 374 FGVRLDGGNAY-AGAVITPYYDSLLVKLTTWGRTFEEAIARMDRALREFRIRGV--KTNIPF 432 (1147)
T ss_pred CCEEECCCCCC-CCCCCCCCCCCHHHHHEEECCCHHHHHHHHHHHHHHCEEECC--CCCHHH
T ss_conf 99896778676-789668875704252226669899999999998642399797--679999
No 37
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=99.93 E-value=3.3e-24 Score=194.92 Aligned_cols=331 Identities=18% Similarity=0.272 Sum_probs=242.4
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCC-
Q ss_conf 287898999999987189799997----955787489989860588067010666555201023578887653101111-
Q gi|254780206|r 46 IDIQNHSAIIHFCQEKHIDLVVVG----PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY- 120 (424)
Q Consensus 46 i~~~d~~~i~~~a~~~~iDlvivg----pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~- 120 (424)
-+.+++..|+..|+-.+.|.+.|| +|. |.+++.++..|+..+||++++.++.+||.-+|+.|+++|+||-+.
T Consensus 58 kSYL~IpnI~aAA~~tG~~AiHPGYGFLSEN---A~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS 134 (451)
T TIGR00514 58 KSYLNIPNIIAAAEITGADAIHPGYGFLSEN---ADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGS 134 (451)
T ss_pred CCCCHHHHHHHHHHHCCCCEECCCCCHHHHH---HHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCC
T ss_conf 2441158899988774880762887734431---2478898738826667871201126886899999974887662388
Q ss_pred -C-CCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEE
Q ss_conf -2-2344011111210124202563046534300023235677888788751445-----3177788775205-752344
Q gi|254780206|r 121 -Q-HFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFA 192 (424)
Q Consensus 121 -~-~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~ 192 (424)
- .+.|.+++.+.++++||||+||++...||||++++++.+|+.+.+..+-.++ +..|-+|+||+-| -+-+++
T Consensus 135 ~GP~~~~~~e~~~~A~~IGyPv~IKA~AGGGGRGmR~vR~~~El~~~~~~a~~EA~AAF~N~~VYiEKfienPRH~E~QV 214 (451)
T TIGR00514 135 DGPLVEDEEEAVRIAKEIGYPVIIKATAGGGGRGMRVVREEDELVKLIKAARAEAAAAFNNDGVYIEKFIENPRHVEIQV 214 (451)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEE
T ss_conf 88631027889999974789689996258997225886286899999999999997402879627863336994079998
Q ss_pred ECCC-CCCCCCCC----CC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 2157-76310352----00-011135665444443443000012344322201000008999998620462356644544
Q gi|254780206|r 193 LCDG-KTAIPFTT----AR-DHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAG 266 (424)
Q Consensus 193 i~dG-~~~~~l~~----~~-dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~ 266 (424)
|-|+ .+++.|.- .| -+.++-|. +|+|-+++++.+++=+ ..+++-+. +.|+|+==++
T Consensus 215 LAD~~GN~vyLgERDCSiQRR~QKllEE------------aPsP~Lt~ElR~~~G~----~Av~aA~~--iGY~GaGTvE 276 (451)
T TIGR00514 215 LADKYGNVVYLGERDCSIQRRNQKLLEE------------APSPALTSELREKMGD----AAVKAAKS--IGYTGAGTVE 276 (451)
T ss_pred EECCCCCEEEECCCCCCHHCCCCCEEEE------------CCCCCCCHHHHHHHHH----HHHHHHHH--CCCEECCEEE
T ss_conf 7517888789712146200046544654------------6888778899999989----99999986--4980035168
Q ss_pred EEEECCE--EEEEEEEEEECCCCCEEEEECC-CCCCHHHHHHHHHCCCCCCCCCCCCC------CEEEEEECCCCCCCCC
Q ss_conf 8985570--4899988651477510443326-54411566654201333321234444------2067542254466877
Q gi|254780206|r 267 LMITEQG--PYLIEYNVRFGDPECQAMMMRL-ESDILEILNSCVHGNLHNTHINWKAE------YALTVVVATKGYPEEY 337 (424)
Q Consensus 267 ~m~t~~g--p~viE~N~R~GDPE~q~ilp~L-~~dl~~il~~~~~g~L~~~~~~~~~~------~~v~Vvlas~GYP~~~ 337 (424)
|++..+| =|.+|.|+|.= -|=- +-.++ ..||+.-=++++.|. ++.||.+ +++--=.=++
T Consensus 277 FLld~~~~rFYFmEMNTRIQ-VEHP-VTEmvtGvDL~keQirvA~G~----~L~~kQe~v~~~GHaieCRINAE------ 344 (451)
T TIGR00514 277 FLLDKNGQRFYFMEMNTRIQ-VEHP-VTEMVTGVDLIKEQIRVAAGE----KLSLKQEDVKLRGHAIECRINAE------ 344 (451)
T ss_pred EEEECCCCEEEEEEECCEEE-EEEC-CEEEEECHHHHHHHHHHHCCC----CCCCCCCEEEEEEEEEEEEECCC------
T ss_conf 88625887357765176021-1103-201460025788899873789----56643114799988998651455------
Q ss_pred CCCCCCCCCCCCCCCCEEEEE--EE-EEECCEEEEC-------CCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 579762487666898689983--35-8778879981-------8807999996289899999999998525899957535
Q gi|254780206|r 338 PHGTIISKIPQNTGTTQLFHA--GT-AIVNNNLTAN-------GGRVLSATALGKTITESRELAYHMVENIDWKHGYWRE 407 (424)
Q Consensus 338 ~kg~~I~~l~~~~~~~~ifha--gt-~~~~g~l~t~-------GGRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~~yR~ 407 (424)
+|+.++-=.++.+.-||+ |- .+-|+..|+. -|=+-=++..|+|-++|..+..++++...-+|. .|
T Consensus 345 ---DP~~~F~PsPG~i~~ylpPGG~gVR~DSh~Y~gY~iPPyYDSmIaKlI~~G~~R~~AI~rMKrAL~E~~I~G~--~T 419 (451)
T TIGR00514 345 ---DPIKNFLPSPGRITSYLPPGGPGVRVDSHVYSGYTIPPYYDSMIAKLITYGKTREEAIARMKRALSEFIITGI--KT 419 (451)
T ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCCCCCCCCHHCCEEEEECCCCHHHHHHHHHHHHHHHEECCC--CC
T ss_conf ---8787786888501554687975220100344878769840202012464058988999999887542220771--05
Q ss_pred HHHHHHH
Q ss_conf 1789887
Q gi|254780206|r 408 DIGLQKK 414 (424)
Q Consensus 408 DIG~~~~ 414 (424)
.|.++.+
T Consensus 420 tI~fH~~ 426 (451)
T TIGR00514 420 TIPFHQR 426 (451)
T ss_pred CHHHHHH
T ss_conf 8468988
No 38
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=99.93 E-value=4.6e-24 Score=193.89 Aligned_cols=333 Identities=17% Similarity=0.298 Sum_probs=239.3
Q ss_pred EEEEC-CCCCHHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 05512-87898999999987189799997----95578748998986058806701066655520102357888765310
Q gi|254780206|r 42 QCVAI-DIQNHSAIIHFCQEKHIDLVVVG----PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 42 ~~~~i-~~~d~~~i~~~a~~~~iDlvivg----pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP 116 (424)
+.-|| ..+++++|+++||++++|.|.|| +|.+ -++|++.++||..+||+++..+.-+||.-+|++..++|||
T Consensus 57 d~~Pv~AYL~I~eiI~vAk~~~vDaiHPGYGfLSE~~---~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvP 133 (1169)
T TIGR01235 57 DLKPVEAYLSIDEIIRVAKKNKVDAIHPGYGFLSENS---EFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVP 133 (1169)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCH---HHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 2687213047156989960078977708856224887---8999998689567379747775405768999888877887
Q ss_pred CCCC--CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CC
Q ss_conf 1111--22344011111210124202563046534300023235677888788751445-----3177788775205-75
Q gi|254780206|r 117 TATY--QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EV 188 (424)
Q Consensus 117 t~~~--~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~ 188 (424)
+-+. -.+++.|++.+|.++.||||++|++...|||||+|+++.+|+.++++++-.++ ++.|.||+||+=+ -+
T Consensus 134 vvPgt~Gp~~t~eev~~f~~~~GYPvi~KAs~GGGGRGMRvvR~~~dv~~~~~rA~sEA~AAFGnd~~yvEklie~pkHi 213 (1169)
T TIGR01235 134 VVPGTDGPVETLEEVLDFAKAIGYPVIIKASYGGGGRGMRVVRSEEDVADAFQRAKSEAKAAFGNDEVYVEKLIERPKHI 213 (1169)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEE
T ss_conf 63688687525999999997569958987216889720168607567999988876887310489806985102488207
Q ss_pred CEEEECCC-CCCCCCC----CCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEE
Q ss_conf 23442157-7631035----200-01113566544444344300001234432220100000899999862046235664
Q gi|254780206|r 189 SFFALCDG-KTAIPFT----TAR-DHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGV 262 (424)
Q Consensus 189 Sv~~i~dG-~~~~~l~----~~~-dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~ 262 (424)
-++.|.|. .++++|= .+| -|.++-| ++|++.++++..+++.+. .++ |.+ .+.|.+-
T Consensus 214 EvQ~LGD~~GNVVHLFERDCSVQRRhQKVvE------------~APA~~Ls~e~Rd~~~~~----Avk-LAk-~~nY~nA 275 (1169)
T TIGR01235 214 EVQLLGDKHGNVVHLFERDCSVQRRHQKVVE------------VAPAPSLSREVRDEIAEY----AVK-LAK-EVNYINA 275 (1169)
T ss_pred EEEEEECCCCCEEEEEECCCCCEEECCEEEE------------ECCCCCCCHHHHHHHHHH----HHH-HHH-HCCCCCC
T ss_conf 8987634889878887507762000550788------------678877888899999999----999-987-4289888
Q ss_pred EEEEEEEECCE--EEEEEEEEEECCCCCEEEEECCCC-CCHHHHHHHHHCC-CCCCCCCCCCCCEEEEEECCCCCCC--C
Q ss_conf 45448985570--489998865147751044332654-4115666542013-3332123444420675422544668--7
Q gi|254780206|r 263 LFAGLMITEQG--PYLIEYNVRFGDPECQAMMMRLES-DILEILNSCVHGN-LHNTHINWKAEYALTVVVATKGYPE--E 336 (424)
Q Consensus 263 l~~~~m~t~~g--p~viE~N~R~GDPE~q~ilp~L~~-dl~~il~~~~~g~-L~~~~~~~~~~~~v~Vvlas~GYP~--~ 336 (424)
==++|.+.+++ =|.||+|+|+= -| -+|-..++. |++.-=..++.|. |....+-..+.-- +-..||-- .
T Consensus 276 GTvEFL~d~~~G~FYFIEvNpRiQ-VE-HTvTE~iTGiDiV~aQI~va~G~sL~~~~~g~~~Q~~----I~t~GyAiQcR 349 (1169)
T TIGR01235 276 GTVEFLVDNDTGKFYFIEVNPRIQ-VE-HTVTEEITGIDIVQAQIRVAEGASLPSKQLGVPEQED----IKTRGYAIQCR 349 (1169)
T ss_pred CCEEEEEECCCCCEEEEEECCCEE-EE-EEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCC----EEEEEEEEEEC
T ss_conf 724885554889377899888000-11-5586467340377789999655746877577886544----03501488722
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEE----EEEECCEEEECC--------CCEEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 75797624876668986899833----587788799818--------8079999962898999999999985258999
Q gi|254780206|r 337 YPHGTIISKIPQNTGTTQLFHAG----TAIVNNNLTANG--------GRVLSATALGKTITESRELAYHMVENIDWKH 402 (424)
Q Consensus 337 ~~kg~~I~~l~~~~~~~~ifhag----t~~~~g~l~t~G--------GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g 402 (424)
-.+-+|-.++.=+.+.+.+|-|| +.++.|+=|+ | +=..=|++.|.|+++|+.+..|++..=+--|
T Consensus 350 vTTEDP~~dF~PdtGri~~YRSa~G~GvRLD~G~sY~-GAiItpYYDsLLVK~~~~A~~~~~a~~kM~RaL~EFRIRG 426 (1169)
T TIGR01235 350 VTTEDPANDFQPDTGRIEVYRSAGGFGVRLDGGNSYA-GAIITPYYDSLLVKVSAWASTFEEAAAKMVRALREFRIRG 426 (1169)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCC-CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 5445864266889672789981784317616766414-6301675233101001037898999999754201110022
No 39
>pfam02843 GARS_C Phosphoribosylglycinamide synthetase, C domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02787).
Probab=99.92 E-value=4.1e-25 Score=201.50 Aligned_cols=92 Identities=45% Similarity=0.740 Sum_probs=87.0
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 20675422544668775797624876668986899833587788799818807999996289899999999998525899
Q gi|254780206|r 322 YALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWK 401 (424)
Q Consensus 322 ~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGRVL~vv~~g~~l~eA~~~ay~~i~~I~~~ 401 (424)
+++||||||+|||++|+||.+|.+++ ..++..||||||+.++++|+|+|||||++++.|+|+++|++++|+.+++|+|+
T Consensus 1 aav~Vvlas~GYP~~~~kg~~I~~~~-~~~~~~if~Agv~~~~~~l~t~GGRvl~v~~~~~~l~~A~~~aY~~i~~I~~~ 79 (92)
T pfam02843 1 AAVGVVLASKGYPESYEKGIEITGLE-EDEGVLVFHAGTALEDGKLVTNGGRVLAVVALGDTLEEAREKAYAALEKIDFP 79 (92)
T ss_pred CEEEEEECCCCCCCCCCCCCEEECCC-CCCCCEEEECCCCCCCCCEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
T ss_conf 90899990799898877998932554-58999999785545668366379978888874686999999999999606799
Q ss_pred CCEECCHHHHHHH
Q ss_conf 9575351789887
Q gi|254780206|r 402 HGYWREDIGLQKK 414 (424)
Q Consensus 402 g~~yR~DIG~~~~ 414 (424)
|+|||+|||+|++
T Consensus 80 g~~yR~DIG~k~l 92 (92)
T pfam02843 80 GLFYRKDIGTKAL 92 (92)
T ss_pred CCEECCCCCCCCC
T ss_conf 9990384540119
No 40
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=99.90 E-value=8.3e-22 Score=177.58 Aligned_cols=367 Identities=16% Similarity=0.232 Sum_probs=255.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEE--EEECCC--HHHHHCCEEEE-------CCCCCHHHHHHHHHHHCCCEEEEC-
Q ss_conf 589988658899999999858996789--995498--35751170551-------287898999999987189799997-
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSEL--WSIPGN--PGIAQHAQCVA-------IDIQNHSAIIHFCQEKHIDLVVVG- 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v--~~~pgN--~g~~~~~~~~~-------i~~~d~~~i~~~a~~~~iDlvivg- 69 (424)
||||===|--.-=|.+.|++- .+..| |.-|+- .+....++-+. -.+++.+.|++.|++...+-|+||
T Consensus 3 ~vLiANRGEIA~RiirTL~~l-gi~sVAvYS~aD~~s~HV~~AD~A~~Lg~~~A~esYL~~dkil~~Ak~tGA~AI~PGY 81 (1226)
T TIGR02712 3 TVLIANRGEIAVRIIRTLRKL-GIRSVAVYSDADRASQHVLDADEAVCLGGATAAESYLDIDKILAIAKKTGAQAIHPGY 81 (1226)
T ss_pred EEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCHHHCCCEECCCCCCHHHHHCCHHHHHHHHHHCCCCEEECCC
T ss_conf 567764437999999998771-8637986321002157823605026058954132221478999999755893874588
Q ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf ---95578748998986058806701066655520102357888765310-11112234401111121012420256304
Q gi|254780206|r 70 ---PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP-TATYQHFSDPMKAKQYVQNKSMPIVVKAD 145 (424)
Q Consensus 70 ---pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP-t~~~~~~~~~~ea~~~~~~~g~PvVVKp~ 145 (424)
+|+ +.++++++++||..+||+.+..+--+=|..+|++.+++|+| +|-.-..+|.+||++.++++||||.||..
T Consensus 82 GFLSEN---A~FA~~C~~aGI~FvGPtpe~ir~fGLKHtAR~lA~~aGVPL~PGTgLL~sl~eA~~~A~~IGYPVMlKST 158 (1226)
T TIGR02712 82 GFLSEN---AAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLESLDEALEAAKEIGYPVMLKST 158 (1226)
T ss_pred CCCCCC---HHHHHHHHHCCCEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 723578---77998998479578778706674438325689999966889888515587799999998646995479870
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHC--C---CCHHHHHHHHHH-CCCCCEEEECCCC-CCCCCCC------CCCCCCCC
Q ss_conf 65343000232356778887887514--4---531777887752-0575234421577-6310352------00011135
Q gi|254780206|r 146 GLCAGKGVVVAATVDEATSAIDRCFQ--Q---INSTVIIEEYLE-GFEVSFFALCDGK-TAIPFTT------ARDHKRIH 212 (424)
Q Consensus 146 ~~agGkGV~i~~~~~e~~~~~~~~~~--~---~~~~VliEefl~-G~E~Sv~~i~dG~-~~~~l~~------~~dyKr~~ 212 (424)
...||-|+..|++.+|+.++++..-+ + ++..|.+|.||+ -.-+-|++|-||+ +++.|.- -|.-|=+.
T Consensus 159 AGGGGIGl~~c~~~~eL~~aFe~Vkrlg~~~F~daGVFlErfv~~ARHvEVQifGDG~G~v~aLGeRDCSLQRRNQKVvE 238 (1226)
T TIGR02712 159 AGGGGIGLQKCDNAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVE 238 (1226)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf 78765245111898999999999899886323635143403203784289987526973369971167544445665587
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECC--EEEEEEEEEEE--CCCCC
Q ss_conf 665444443443000012344322201000008999998620462356644544898557--04899988651--47751
Q gi|254780206|r 213 DGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQ--GPYLIEYNVRF--GDPEC 288 (424)
Q Consensus 213 ~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~--gp~viE~N~R~--GDPE~ 288 (424)
| ||+|.++++..+++.+ +...|.+ ...|++-==++||-+.. .=|.||+|+|| =-|=|
T Consensus 239 E-------------TPAP~LP~~~R~~L~~-----AA~~Lg~-~V~YrSAGTVEFiYD~~~d~FYFLEVNTRLQVEHPvT 299 (1226)
T TIGR02712 239 E-------------TPAPNLPEETRAALLA-----AAEKLGE-AVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVT 299 (1226)
T ss_pred E-------------CCCCCCCHHHHHHHHH-----HHHHHHH-HHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCE
T ss_conf 2-------------7746864899999999-----9999999-7187637604774022108712113234111335730
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCCC---C----CCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEE
Q ss_conf 04433265441156665420133332-1234---4----442067542254466877579762-4876668986899833
Q gi|254780206|r 289 QAMMMRLESDILEILNSCVHGNLHNT-HINW---K----AEYALTVVVATKGYPEEYPHGTII-SKIPQNTGTTQLFHAG 359 (424)
Q Consensus 289 q~ilp~L~~dl~~il~~~~~g~L~~~-~~~~---~----~~~~v~Vvlas~GYP~~~~kg~~I-~~l~~~~~~~~ifhag 359 (424)
+.+ -.=||++.|...+.+++... .... . .++|+=+ -=|=+.+.|++.- +|+=. + .-|-..
T Consensus 300 E~V---tGlDLVEWM~r~AAg~~p~~~~~~~~~~~~l~p~G~aiEa----RvYAEnP~k~F~PSpG~Lt---~-V~FP~~ 368 (1226)
T TIGR02712 300 EMV---TGLDLVEWMVRIAAGELPDFDSLNIEIFDNLTPRGAAIEA----RVYAENPAKNFQPSPGLLT---E-VQFPDD 368 (1226)
T ss_pred EEE---ECCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCEEEEEE----EEEEECCCCCCCCCCCEEE---E-EECCCC
T ss_conf 178---4640898999971688888524430003578875038999----9844077677726986068---8-772788
Q ss_pred --E-EEECCEEEECCCCE--------EEEEEECCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf --5-87788799818807--------99999628989999999999852589995
Q gi|254780206|r 360 --T-AIVNNNLTANGGRV--------LSATALGKTITESRELAYHMVENIDWKHG 403 (424)
Q Consensus 360 --t-~~~~g~l~t~GGRV--------L~vv~~g~~l~eA~~~ay~~i~~I~~~g~ 403 (424)
- .+. +.|+.+|=+| -=|+..|+|-++|+++...++++=+..|.
T Consensus 369 ~G~~~Rv-DTWV~~Gtevsp~YDPmlAKiIv~g~~R~~A~~kL~~AL~~T~v~Gi 422 (1226)
T TIGR02712 369 GGKAVRV-DTWVETGTEVSPEYDPMLAKIIVHGKDREDAIAKLSQALDETRVYGI 422 (1226)
T ss_pred CCCEEEE-ECEECCCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 8953787-02112783567765874244664367978999999988730101235
No 41
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=99.90 E-value=4.1e-24 Score=194.22 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----C
Q ss_conf 10235788876531011112--2344011111210124202563046534300023235677888788751445-----3
Q gi|254780206|r 102 SKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----N 174 (424)
Q Consensus 102 sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~ 174 (424)
||..+|++|+++|||||+|. .+++.+++.++++++|||+||||....||+|+.++++.+|+.++++.++..+ +
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~ 80 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGN 80 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98999999998698919987888799999999999859978997377789987512412778999999998751431699
Q ss_pred HHHHHHHHHHC-CCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 17778877520-57523442157763-10352000111356654444434430000123443222010000089999986
Q gi|254780206|r 175 STVIIEEYLEG-FEVSFFALCDGKTA-IPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGM 252 (424)
Q Consensus 175 ~~VliEefl~G-~E~Sv~~i~dG~~~-~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l 252 (424)
++|++||||+| .|+|+.++.|+... +.++....+- ..++|..-..+|++.++++..+++ .+-+.+.+
T Consensus 81 ~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~Pa~~l~~~~~e~i----~~~a~~~~ 149 (211)
T pfam02786 81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSD-------QRRTQKSIEVAPSQTLTDEERQML----REAAVKIA 149 (211)
T ss_pred CCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEE-------ECCCCCEEEEECCCCCCHHHHHHH----HHHHHHHH
T ss_conf 8389974047765899999982799899999633225-------033584446817999999999999----99999987
Q ss_pred HHCCCEEEEEEEEEEEEEC--CEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 2046235664454489855--704899988651477510443326544115666542013
Q gi|254780206|r 253 QKEQNPFQGVLFAGLMITE--QGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGN 310 (424)
Q Consensus 253 ~~~~~~y~G~l~~~~m~t~--~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~ 310 (424)
+..| ++|+..++|+++. +.||+||+|+|+.+- ..+..-...-||++.-..++-|.
T Consensus 150 ~~lg--~~G~~~vef~~~~~~~~~~~iEvNpR~~~~-~~~t~~~tg~~l~~~~~~~a~G~ 206 (211)
T pfam02786 150 RHLG--YVGAGTVEFALDPFSGEYYFIEMNTRLQVS-HALAEKATGYDLAKEAAKIALGY 206 (211)
T ss_pred HHCC--EECCCEEEEEEECCCCEEEEEECCCCCCCH-HHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 5264--423324789996799959999670896834-77889987948999999997799
No 42
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.89 E-value=6.3e-22 Score=178.48 Aligned_cols=365 Identities=18% Similarity=0.292 Sum_probs=242.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEE--EEECC-CHHHHHC-CEEEE-------CCCCCHHHHHHHHHHHCCCEEEEC-
Q ss_conf 589988658899999999858996789--99549-8357511-70551-------287898999999987189799997-
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSEL--WSIPG-NPGIAQH-AQCVA-------IDIQNHSAIIHFCQEKHIDLVVVG- 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v--~~~pg-N~g~~~~-~~~~~-------i~~~d~~~i~~~a~~~~iDlvivg- 69 (424)
||||---|-..--+.....+ -.+.+| |.-++ |...... ++-+. -++.|.+.|++.|++..-|-|.||
T Consensus 4 KiLIANRGEIAcRVIRtar~-lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGY 82 (645)
T COG4770 4 KILIANRGEIACRVIRTARD-LGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGY 82 (645)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 48872464346899999998-09956999725777852666412244317996012122688999999973832136884
Q ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf ---955787489989860588067010666555201023578887653101111--223440111112101242025630
Q gi|254780206|r 70 ---PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY--QHFSDPMKAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 70 ---pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~--~~~~~~~ea~~~~~~~g~PvVVKp 144 (424)
+|. +.++++++++|+-.+||+..+.+-.+||.-+|.+|.+.|+|+.+. ....|.+++.++++++|||+.||+
T Consensus 83 GFLSEN---a~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKA 159 (645)
T COG4770 83 GFLSEN---ADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKA 159 (645)
T ss_pred CCCCCC---HHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 212359---89999999779189788979999844679999999974998068978744589999999986398589996
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEEECCCC-CCCCCCC-----CCCCCCCC
Q ss_conf 46534300023235677888788751445-----3177788775205-75234421577-6310352-----00011135
Q gi|254780206|r 145 DGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALCDGK-TAIPFTT-----ARDHKRIH 212 (424)
Q Consensus 145 ~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~i~dG~-~~~~l~~-----~~dyKr~~ 212 (424)
+...||||++++.+.+|+.++++.+-.++ +.+++||+|++-| -+.+++|-|.. +++.|.. -|-|.++-
T Consensus 160 saGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVI 239 (645)
T COG4770 160 SAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVI 239 (645)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEEEEECCCCCEEEEECCCCCHHHHCCHHH
T ss_conf 36899775376268899999999999998850488647624551787448999986277878886325332423112232
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEE--CCCCCE
Q ss_conf 6654444434430000123443222010000089999986204623566445448985570-4899988651--477510
Q gi|254780206|r 213 DGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRF--GDPECQ 289 (424)
Q Consensus 213 ~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~--GDPE~q 289 (424)
|. .|+|++++++.+.+-+. .+++-+.-| |.|-=-++|++..++ -|.+|.|+|| --|=|+
T Consensus 240 EE------------APaP~l~~~~R~amg~a----Av~~a~avg--Y~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE 301 (645)
T COG4770 240 EE------------APAPFLTEETREAMGEA----AVAAAKAVG--YVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTE 301 (645)
T ss_pred HC------------CCCCCCCHHHHHHHHHH----HHHHHHHCC--CCCCCEEEEEECCCCCEEEEEEECCEECCCCCHH
T ss_conf 00------------89999999999999999----999998629--7757558999838986899986220202564122
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE--EE-EEE
Q ss_conf 4433265441156665420133332123444----4206754225446687757976248766689868998--33-587
Q gi|254780206|r 290 AMMMRLESDILEILNSCVHGNLHNTHINWKA----EYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFH--AG-TAI 362 (424)
Q Consensus 290 ~ilp~L~~dl~~il~~~~~g~L~~~~~~~~~----~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifh--ag-t~~ 362 (424)
.+ -.-||++-.+.+++|+ ...+.+++ ++++-.=+ |-+.+..++ ||. .+....|+ +| +.+
T Consensus 302 ~i---TGiDLVewqiRVA~Ge--kL~~~Q~di~l~GhAiE~Ri----yAEDp~r~F----LPs-~G~l~~~~~P~~~~vR 367 (645)
T COG4770 302 LI---TGIDLVEWQIRVASGE--KLPFTQDDIPLNGHAIEARI----YAEDPARGF----LPS-TGRLTRYRPPAGPGVR 367 (645)
T ss_pred HH---HHHHHHHHHHHHHCCC--CCCCCCCCCCCCCEEEEEEE----ECCCCCCCC----CCC-CCEEEEECCCCCCCEE
T ss_conf 42---0138999999974388--57766566544650578887----334755576----678-8505766288888431
Q ss_pred ECCEEEECCC--------CEEEEEEECCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7887998188--------0799999628989999999999852589995
Q gi|254780206|r 363 VNNNLTANGG--------RVLSATALGKTITESRELAYHMVENIDWKHG 403 (424)
Q Consensus 363 ~~g~l~t~GG--------RVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~ 403 (424)
.|..+.+ |+ =+--++.-|.|-++|.++.-+++..-.-+|.
T Consensus 368 vDsGV~~-G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~v~Gi 415 (645)
T COG4770 368 VDSGVRE-GDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEGI 415 (645)
T ss_pred CCCCCCC-CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCC
T ss_conf 2367433-87235553558888864388899999999999986084474
No 43
>KOG0238 consensus
Probab=99.86 E-value=1.2e-19 Score=161.92 Aligned_cols=327 Identities=16% Similarity=0.231 Sum_probs=221.3
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCC--
Q ss_conf 87898999999987189799997----955787489989860588067010666555201023578887653101111--
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHIDLVVVG----PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY-- 120 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iDlvivg----pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~-- 120 (424)
+..+.+.|++.|++..-..+.|| +|. +.+++.++.+|+..+||+..+.|-.++|.-+|++|+++|+|+.+.
T Consensus 55 SYL~~~~I~~aa~~tgaqaihPGYGFLSEn---~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~ 131 (670)
T KOG0238 55 SYLRMDKIIDAAKRTGAQAIHPGYGFLSEN---AEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYH 131 (670)
T ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCC---HHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 341378999999862884621785532355---38999998769868798879988731257789999864996136856
Q ss_pred CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEEEC
Q ss_conf 22344011111210124202563046534300023235677888788751445-----3177788775205-75234421
Q gi|254780206|r 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALC 194 (424)
Q Consensus 121 ~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~i~ 194 (424)
-...|.+++.+.+.++|||+.||+....||||++++.+.+|..+.++.+-.++ ++.+++|+|++-+ -+.+++|.
T Consensus 132 g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~g 211 (670)
T KOG0238 132 GEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFG 211 (670)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEE
T ss_conf 43266799999998619857999515788763175148688999999888888763186411077763687548999973
Q ss_pred CCC-CCCCCCC-----CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEE
Q ss_conf 577-6310352-----0001113566544444344300001234432220100000899999862046235664454489
Q gi|254780206|r 195 DGK-TAIPFTT-----ARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLM 268 (424)
Q Consensus 195 dG~-~~~~l~~-----~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m 268 (424)
|.. +++.|.- -|-|.++-|. +|+|.++++...++-+. .+++-++.| |.|.=-++|+
T Consensus 212 D~hGnav~l~ERdCSvQRRnQKiiEE------------aPap~l~~e~R~~lgea----Av~aa~avg--Y~~aGTVEFi 273 (670)
T KOG0238 212 DKHGNAVHLGERDCSVQRRNQKIIEE------------APAPNLPEETRRALGEA----AVRAAKAVG--YVGAGTVEFI 273 (670)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHC------------CCCCCCCHHHHHHHHHH----HHHHHHHHC--CCCCCEEEEE
T ss_conf 47776888504544242321156630------------89999998999999999----999988638--7644449999
Q ss_pred EECCE-EEEEEEEEEE--CCCCCEEEEECCCCCCHHHHHHHHHCCC---CCCCCCCCCCCEE-EEEECCCCCCCCCCCCC
Q ss_conf 85570-4899988651--4775104433265441156665420133---3321234444206-75422544668775797
Q gi|254780206|r 269 ITEQG-PYLIEYNVRF--GDPECQAMMMRLESDILEILNSCVHGNL---HNTHINWKAEYAL-TVVVATKGYPEEYPHGT 341 (424)
Q Consensus 269 ~t~~g-p~viE~N~R~--GDPE~q~ilp~L~~dl~~il~~~~~g~L---~~~~~~~~~~~~v-~Vvlas~GYP~~~~kg~ 341 (424)
++..+ -|.+|.|+|| --|-|+.|- ..||++-.+.++.|.- ...++..+ +++. |-+ |-+.+.++.
T Consensus 274 ~D~~~~FyFmEmNTRLQVEHPvTEmIt---g~DLVewqiRvA~ge~lp~~q~ei~l~-GhafE~Ri-----yAEdp~~~f 344 (670)
T KOG0238 274 VDSKDNFYFMEMNTRLQVEHPVTEMIT---GTDLVEWQIRVAAGEPLPLKQEEIPLN-GHAFEARI-----YAEDPYKGF 344 (670)
T ss_pred ECCCCCEEEEEEECEEEECCCCHHHCC---CHHHHHHHHHHHCCCCCCCCCCEEEEC-CEEEEEEE-----EECCCCCCC
T ss_conf 837885799984022530364163212---227899999986499999770201364-54789998-----500775467
Q ss_pred -CCCC-CC---CCC-CCCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf -6248-76---668-98689983358778879981880799999628989999999999852589995
Q gi|254780206|r 342 -IISK-IP---QNT-GTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHG 403 (424)
Q Consensus 342 -~I~~-l~---~~~-~~~~ifhagt~~~~g~l~t~GGRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~ 403 (424)
+-.+ |. ... .+..-...|+...+.--..----+.-++.-|+|.++|..+.-++++.-.--|.
T Consensus 345 ~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~~I~Gv 412 (670)
T KOG0238 345 LPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNYVIRGV 412 (670)
T ss_pred CCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEEEECCCHHHHHHHHHHHHHHCEEECC
T ss_conf 77874111202678899725555730287446113650015667648789999999999860688467
No 44
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.86 E-value=7.8e-20 Score=163.34 Aligned_cols=331 Identities=19% Similarity=0.300 Sum_probs=223.4
Q ss_pred EC-CCCCHHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 12-87898999999987189799997----95578748998986058806701066655520102357888765310111
Q gi|254780206|r 45 AI-DIQNHSAIIHFCQEKHIDLVVVG----PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTAT 119 (424)
Q Consensus 45 ~i-~~~d~~~i~~~a~~~~iDlvivg----pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~ 119 (424)
++ ...++++|++.|++.+.|.+.|| +|.| -++..+.++||..+||+.+...+.+||..+|+...++|+|+.+
T Consensus 62 Pi~aYL~IdeII~iAk~~gaDaIhPGYGfLSEn~---efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvip 138 (1149)
T COG1038 62 PVEAYLSIDEIIRIAKRSGADAIHPGYGFLSENP---EFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIP 138 (1149)
T ss_pred CHHHHCCHHHHHHHHHHCCCCEECCCCCCCCCCH---HHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf 2687432999999999708873137843244798---9999999759789688879998844288899999975998556
Q ss_pred C--CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEE
Q ss_conf 1--22344011111210124202563046534300023235677888788751445-----3177788775205-75234
Q gi|254780206|r 120 Y--QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFF 191 (424)
Q Consensus 120 ~--~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~ 191 (424)
. -..++.+++++|+++.|||++||++-..||||++++.+.+++.++++++-.++ +..|.||+|++.+ .+.++
T Consensus 139 gt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQ 218 (1149)
T COG1038 139 GTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQ 218 (1149)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCEEEEE
T ss_conf 99998212999999998669858999714798665266258889999999988999974189806656552486526899
Q ss_pred EECCCC-CCCCCC----CC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 421577-631035----20-001113566544444344300001234432220100000899999862046235664454
Q gi|254780206|r 192 ALCDGK-TAIPFT----TA-RDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFA 265 (424)
Q Consensus 192 ~i~dG~-~~~~l~----~~-~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~ 265 (424)
.+-|.. +++.|- .+ |-|.+.-| ++|++.+++++.+++++. .++-.+ .+.|++-=-+
T Consensus 219 iLgD~~GnvvHLfERDCSvQRRhQKVVE------------~APa~~L~~~~R~~ic~~----Avkla~--~~~Y~~AGTv 280 (1149)
T COG1038 219 ILGDTHGNVVHLFERDCSVQRRHQKVVE------------VAPAPYLSPELRDEICDD----AVKLAR--NIGYINAGTV 280 (1149)
T ss_pred EEECCCCCEEEEEECCCCHHHCCCEEEE------------ECCCCCCCHHHHHHHHHH----HHHHHH--HCCCCCCCEE
T ss_conf 8605778788886235533101440378------------568888999999999999----999999--7397656647
Q ss_pred EEEEECCE-EEEEEEEEEECCCCCEEEEECCCC-CCHHHHHHHHHCC-CCCCCCCCCCCCEEEEEECCCCCCC--CCCCC
Q ss_conf 48985570-489998865147751044332654-4115666542013-3332123444420675422544668--77579
Q gi|254780206|r 266 GLMITEQG-PYLIEYNVRFGDPECQAMMMRLES-DILEILNSCVHGN-LHNTHINWKAEYALTVVVATKGYPE--EYPHG 340 (424)
Q Consensus 266 ~~m~t~~g-p~viE~N~R~GDPE~q~ilp~L~~-dl~~il~~~~~g~-L~~~~~~~~~~~~v~Vvlas~GYP~--~~~kg 340 (424)
+|.+.++| -|.||+|.|.- .|- +|-..+.. |++.--+.++.|. |...++-...+.-+ ...||-- .-.+.
T Consensus 281 EFLvd~~~~fyFIEvNPRiQ-VEH-TiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI----~~~G~AiQcRITTE 354 (1149)
T COG1038 281 EFLVDEDGKFYFIEVNPRIQ-VEH-TITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDI----RTHGYAIQCRITTE 354 (1149)
T ss_pred EEEECCCCCEEEEEECCCEE-EEE-EEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEECC
T ss_conf 88873888689999547345-677-6455441216788789885356568744599744440----33643788774133
Q ss_pred CCCCCCCCCCCCCEEEEE----EEEEECCEEEECC-------CCEEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 762487666898689983----3587788799818-------8079999962898999999999985258999
Q gi|254780206|r 341 TIISKIPQNTGTTQLFHA----GTAIVNNNLTANG-------GRVLSATALGKTITESRELAYHMVENIDWKH 402 (424)
Q Consensus 341 ~~I~~l~~~~~~~~ifha----gt~~~~g~l~t~G-------GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g 402 (424)
++-.++--+.+.+..|.+ |+..+.|+-++-. +=..-+++.|.|+++|+.++.+++..-+--|
T Consensus 355 DP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrIrG 427 (1149)
T COG1038 355 DPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRIRG 427 (1149)
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHEECC
T ss_conf 7454778887527888627874387457766566463144554144563248998999999999888845112
No 45
>KOG0369 consensus
Probab=99.85 E-value=5.2e-19 Score=157.36 Aligned_cols=326 Identities=17% Similarity=0.298 Sum_probs=223.3
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCC--
Q ss_conf 87898999999987189799997----955787489989860588067010666555201023578887653101111--
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHIDLVVVG----PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY-- 120 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iDlvivg----pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~-- 120 (424)
....+++|++.|+++++|+|.+| +|. +.++++...+|+..+||+.+..+-.+||.-+|.+.-++|+|+.+.
T Consensus 91 AYL~ideii~iak~~~vdavHPGYGFLSEr---sdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTp 167 (1176)
T KOG0369 91 AYLAIDEIISIAKKHNVDAVHPGYGFLSER---SDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTP 167 (1176)
T ss_pred HHHCHHHHHHHHHHCCCCEECCCCCCCCCC---HHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 651479999999872887325774212212---48999998659669688979998842088888999971997158999
Q ss_pred CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHCC-CCCEEEEC
Q ss_conf 22344011111210124202563046534300023235677888788751445-----3177788775205-75234421
Q gi|254780206|r 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALC 194 (424)
Q Consensus 121 ~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~~~VliEefl~G~-E~Sv~~i~ 194 (424)
..+++.+||.+|.++.|+|+++|+....||||++++++.+++.+++.++..++ +..+.||.|++-+ .+.++.+.
T Consensus 168 gPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllg 247 (1176)
T KOG0369 168 GPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLG 247 (1176)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCEEEEEEEC
T ss_conf 97542999999998619838996101689764377502556999999888999986178615378662586526898721
Q ss_pred CC-CCCCCCC-----CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEE
Q ss_conf 57-7631035-----20001113566544444344300001234432220100000899999862046235664454489
Q gi|254780206|r 195 DG-KTAIPFT-----TARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLM 268 (424)
Q Consensus 195 dG-~~~~~l~-----~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m 268 (424)
|. .+++.|- .-|-|.+.-| ++|++.++++..+.+ ....++--+..| |.--=-++|.
T Consensus 248 D~~GNvvHLyERDCSvQRRHQKVVE------------iAPA~~Lp~~vR~~~----~~davklAk~vg--Y~NAGTvEFL 309 (1176)
T KOG0369 248 DKHGNVVHLYERDCSVQRRHQKVVE------------IAPAKTLPPEVRDAI----LTDAVKLAKHVG--YENAGTVEFL 309 (1176)
T ss_pred CCCCCEEEEEECCCCHHHHHCCEEE------------ECCCCCCCHHHHHHH----HHHHHHHHHHHC--CCCCCEEEEE
T ss_conf 3568789876145516432010367------------345565998999999----999999999847--5657707887
Q ss_pred EECCE-EEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCCCC----CCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 85570-4899988651477510443326544115666542013-333212344----44206754225446687757976
Q gi|254780206|r 269 ITEQG-PYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGN-LHNTHINWK----AEYALTVVVATKGYPEEYPHGTI 342 (424)
Q Consensus 269 ~t~~g-p~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~-L~~~~~~~~----~~~~v~Vvlas~GYP~~~~kg~~ 342 (424)
++..| -|.||+|+|+- .|-.+-=..-.-||+..-..++.|. |.+.-+.-. .++++-.-+. +.++
T Consensus 310 vD~~g~hYFIEvN~RlQ-VEHTvTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvT---------TEDP 379 (1176)
T KOG0369 310 VDQKGRHYFIEVNPRLQ-VEHTVTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVT---------TEDP 379 (1176)
T ss_pred ECCCCCEEEEEECCCEE-EEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCEEEEEEEE---------CCCC
T ss_conf 71679789999546435-6655231004520101111343178753235430203204337998872---------3585
Q ss_pred CCCCCCCCCCCEEEEEEE----EEECCE-----EEECC--CCEEEEEEECCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 248766689868998335----877887-----99818--80799999628989999999999852589995
Q gi|254780206|r 343 ISKIPQNTGTTQLFHAGT----AIVNNN-----LTANG--GRVLSATALGKTITESRELAYHMVENIDWKHG 403 (424)
Q Consensus 343 I~~l~~~~~~~~ifhagt----~~~~g~-----l~t~G--GRVL~vv~~g~~l~eA~~~ay~~i~~I~~~g~ 403 (424)
-.++.-+.+.+-+|.+|- ..++.+ ++|-- +-..-|++.|.|.+.++.+..+++..-+..|.
T Consensus 380 a~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiRGV 451 (1176)
T KOG0369 380 AKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRGV 451 (1176)
T ss_pred CCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCE
T ss_conf 546899875079997078744762475435664116555532788985388656789999999998722032
No 46
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.84 E-value=2.2e-18 Score=152.88 Aligned_cols=360 Identities=19% Similarity=0.210 Sum_probs=224.5
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEEC-C-CHHHHHCC-EEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 958998865--88999999998589967899954-9-83575117-0551287898999999987189799997955787
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIP-G-NPGIAQHA-QCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~p-g-N~g~~~~~-~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
|.|.|||+| ||.-| ++-.+- -.++++.. . |+-..+.+ .++..+..|.+++.+++.+ -|.+----|.--.
T Consensus 2 ~tvgIlGGGQLgrMm~--~aa~~l--G~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~--~DViT~EfE~V~~ 75 (375)
T COG0026 2 KTVGILGGGQLGRMMA--LAAARL--GIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAK--CDVITYEFENVPA 75 (375)
T ss_pred CEEEEECCCHHHHHHH--HHHHHC--CCEEEEECCCCCCCHHHCCCCEEECCCCCHHHHHHHHHH--CCEEEEEECCCCH
T ss_conf 7699976869999999--999864--977999569999963341431541577888999999862--9889985146988
Q ss_pred HHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEC-CCCCCCCCC
Q ss_conf 4899898605880670106665552010235788876531011112234401111121012420256304-653430002
Q gi|254780206|r 76 NGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKAD-GLCAGKGVV 154 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~-~~agGkGV~ 154 (424)
. ..+.|... .+++ |+.++.++-.||...|+|++++|||||+|+.+++.+++.++++++|+|.|+|.. +..-|||.+
T Consensus 76 ~-aL~~l~~~-~~v~-p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~ 152 (375)
T COG0026 76 E-ALEKLAAS-VKVF-PSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQW 152 (375)
T ss_pred H-HHHHHHHH-CCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEE
T ss_conf 9-99999961-6769-9989988776689999999976999998278579889999999759956998322656688708
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-CCCCCEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 323567788878875144531777887752-0575234421-57763103520001113566544444344300001234
Q gi|254780206|r 155 VAATVDEATSAIDRCFQQINSTVIIEEYLE-GFEVSFFALC-DGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGM 232 (424)
Q Consensus 155 i~~~~~e~~~~~~~~~~~~~~~VliEefl~-G~E~Sv~~i~-dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~ 232 (424)
++.+.+++.......- ..... ++|+|+. -.|+|+.+.- .+.++..+|++..+-+-+=-. =++.|+ -+
T Consensus 153 ~i~~~~~~~~~~~~~~-~~~~~-vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~eN~h~~gIl~--------~siaPa-~i 221 (375)
T COG0026 153 RIRSDADLELRAAGLA-EGGVP-VLEEFVPFEREISVIVARSNDGEVAFYPVAENVHRNGILR--------TSIAPA-RI 221 (375)
T ss_pred EEECCCCCHHHHHHHH-CCCCE-EEEEECCCCEEEEEEEEECCCCCEEEECCCCEEEECCEEE--------EEEECC-CC
T ss_conf 9407010235676651-36863-6886035664899999985899789806621013367899--------997237-68
Q ss_pred CCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 43222010000089999986204623566445448985570-48999886514775104433265441156665420133
Q gi|254780206|r 233 SQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNL 311 (424)
Q Consensus 233 ~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~L 311 (424)
++++.++. +++..+.+++ ++|.|+|-++|-+|.+| ..|=|+..|.-+----++--.-.|-|-..+-+++.--|
T Consensus 222 ~~~~~~~A-~~~a~~i~~~-----L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glPL 295 (375)
T COG0026 222 PDDLQAQA-EEMAKKIAEE-----LDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLPL 295 (375)
T ss_pred CHHHHHHH-HHHHHHHHHH-----CCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCC
T ss_conf 98999999-9999999997-----59457899999997898489861368987866512331212489999999829999
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCC-EEEEEEECCCHHHHHHH
Q ss_conf 33212344442067542254466877579762487666898689983358778879981880-79999962898999999
Q gi|254780206|r 312 HNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGR-VLSATALGKTITESREL 390 (424)
Q Consensus 312 ~~~~~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGR-VL~vv~~g~~l~eA~~~ 390 (424)
.+. .....++|.=+|=.. .| ...-..+ + ..++.++++=|-. -+--|| +-.|+-.+.+.++..+.
T Consensus 296 g~~--~~~~p~vMvNlLG~~-~~--~~~~~~~--l--~~p~~~lH~YGK~------e~R~gRKmGHvn~~~~~~~~~~~~ 360 (375)
T COG0026 296 GST--TLLSPSVMVNLLGDD-VP--PDDVKAV--L--ALPGAHLHWYGKA------EARPGRKMGHVNVLGSDSDELEQL 360 (375)
T ss_pred CCC--CCCCCEEEEEECCCC-CC--HHHHHHH--H--HCCCCEEEEECCC------CCCCCCEEEEEEEECCCHHHHHHH
T ss_conf 975--424760799951777-76--1346889--7--4999789970576------577997335688615978999999
Q ss_pred HHHHHHCCCCC
Q ss_conf 99998525899
Q gi|254780206|r 391 AYHMVENIDWK 401 (424)
Q Consensus 391 ay~~i~~I~~~ 401 (424)
+-........+
T Consensus 361 ~~~l~~~~~~~ 371 (375)
T COG0026 361 AALLPAKQLSG 371 (375)
T ss_pred HHHHHHHHCCC
T ss_conf 87643333024
No 47
>pfam02655 ATP-grasp_3 ATP-grasp domain. No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).
Probab=99.83 E-value=5.4e-21 Score=171.72 Aligned_cols=157 Identities=27% Similarity=0.399 Sum_probs=114.4
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 01023578887653101111223440111112101242025630465343000232356778887887514453177788
Q gi|254780206|r 101 SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIE 180 (424)
Q Consensus 101 ~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliE 180 (424)
+||..++++|+++|||||++..+.+.++ +.+|+||||...+||+||+++++.+++.++. ..+|+|
T Consensus 2 ~DK~~t~~~l~~~gip~P~~~~~~~~~~-------~~~P~VvKP~~g~gs~Gv~~v~~~~~l~~~~--------~~~liq 66 (160)
T pfam02655 2 SDKLKTYKALKNAGVPTPETLSAEEPTE-------EEKKYIVKPRDGCGGEGVRFVENGREDEEFI--------ENVIIQ 66 (160)
T ss_pred CCHHHHHHHHHHCCCCCCCEEECCCHHH-------CCCCEEEECCCCCCCCCEEEEECHHHHHHHC--------CCEEEE
T ss_conf 8989999999987959999986578235-------5998999808989873189994899986532--------565887
Q ss_pred HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEE
Q ss_conf 77520575234421577631035200011135665444443443000012344322201000008999998620462356
Q gi|254780206|r 181 EYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQ 260 (424)
Q Consensus 181 efl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~ 260 (424)
||++|.|+|+.++++++.+.++...+.+. . ..... ..-.|+.+|.+.. ..+++ .+++..+++++. + ++
T Consensus 67 e~i~G~e~sv~~l~~~~~~~~~~~~~~~~--~-~~~~~-~~~~g~~~~~~~~---~~~~~-~~~~~~~~~~l~--~--~~ 134 (160)
T pfam02655 67 EFIEGEPLSVSLLSDGEKALPLSVNRQLI--D-NAGSG-FVYAGNLTPSRTE---LKEEL-EELAEEVVEALP--G--LR 134 (160)
T ss_pred EEEECCEEEEEEEEECCEEEEEEEEEEEE--C-CCCCC-CCCCCCCEECCCC---CHHHH-HHHHHHHHHHHC--C--CC
T ss_conf 47944423899999899999999857885--1-47864-2103763013758---88999-999999999843--8--75
Q ss_pred EEEEEEEEEECCEEEEEEEEEEEC
Q ss_conf 644544898557048999886514
Q gi|254780206|r 261 GVLFAGLMITEQGPYLIEYNVRFG 284 (424)
Q Consensus 261 G~l~~~~m~t~~gp~viE~N~R~G 284 (424)
|++++|+|+++++|||||+|+||-
T Consensus 135 G~~~vd~~~~~~~~~viEiNpR~s 158 (160)
T pfam02655 135 GYVGVDLVLTDNGPYVIEVNPRIT 158 (160)
T ss_pred CEEEEEEEEECCEEEEEEEECCCC
T ss_conf 648889999999089999968877
No 48
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.82 E-value=8.8e-21 Score=170.17 Aligned_cols=161 Identities=23% Similarity=0.290 Sum_probs=117.2
Q ss_pred HHHHHHHHCCCCCCCCCCH----HHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8876531011112234401----111121012420256304653430002323567788878875144531777887752
Q gi|254780206|r 109 FCTKYGIPTATYQHFSDPM----KAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE 184 (424)
Q Consensus 109 ~l~~~gIPt~~~~~~~~~~----ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~ 184 (424)
+|+++|||||+|..+++.+ ++.++.+++|||+||||....+|+||.+++|.+|+.++++.++. .++.+|||||++
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~~~-~~~~vlVEefi~ 79 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQ-YDNKVLIEEAIE 79 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH-CCCCEEEEECCC
T ss_conf 9556599999908982532343579999986599889998999986687999584687999999874-598079998566
Q ss_pred CCCCCEEEECCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCC
Q ss_conf 0575234421577631035200--------01113566544444344300001234432220100000899999862046
Q gi|254780206|r 185 GFEVSFFALCDGKTAIPFTTAR--------DHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQ 256 (424)
Q Consensus 185 G~E~Sv~~i~dG~~~~~l~~~~--------dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~ 256 (424)
|.|++|.++.+++. ..+|+.+ ||...+..+.+ + ...|.+ ++++. .+++.+-..++.+..|
T Consensus 80 G~E~~v~vl~~~~~-~~~~~~e~~~~~~~~~~~~k~~~~~~-----~-~~~Pa~-l~~~~----~~~i~~~A~~~~~aLg 147 (201)
T pfam07478 80 GREIECAVLGNEDL-EVSPVGEIRLSGGFYDYEAKYILSSA-----Q-IIVPAD-LPEEV----EEQIQELALKAYKALG 147 (201)
T ss_pred CCEEEEEEEECCCE-EEEEEEEEECCCCEEEHHHEECCCCC-----E-EEECCC-CCHHH----HHHHHHHHHHHHHHHC
T ss_conf 96799999708980-89875899437750267680136872-----3-761566-85999----9999999999999848
Q ss_pred CEEEEEEEEEEEEECCE-EEEEEEEEEEC
Q ss_conf 23566445448985570-48999886514
Q gi|254780206|r 257 NPFQGVLFAGLMITEQG-PYLIEYNVRFG 284 (424)
Q Consensus 257 ~~y~G~l~~~~m~t~~g-p~viE~N~R~G 284 (424)
+ +|+..++|+++++| ||++|+|++.|
T Consensus 148 ~--~g~~rvD~~~d~~g~~~vlEvN~~Pg 174 (201)
T pfam07478 148 C--RGLARIDFFLTEDGEIYLNEVNTMPG 174 (201)
T ss_pred C--CCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf 8--76057999996899499999549799
No 49
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.82 E-value=3.6e-20 Score=165.79 Aligned_cols=167 Identities=17% Similarity=0.293 Sum_probs=118.5
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC-CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 010235788876531011112234401111121012-4202563046534300023235677888788751445317778
Q gi|254780206|r 101 SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNK-SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVII 179 (424)
Q Consensus 101 ~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~-g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~Vli 179 (424)
+||..+|++|+++|||||++..+.+.+++.++++++ +||+||||...++|+||.++++.+++.++++... ..+.++++
T Consensus 2 ~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~~-~~~~~vlv 80 (190)
T pfam08443 2 RDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAFK-WLKNQILV 80 (190)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHH-HCCCCEEE
T ss_conf 78899999999879797998998899999999998089838996788999845588606377778888886-34873775
Q ss_pred HHHHH---CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCC
Q ss_conf 87752---057523442157763103520001113566544444344300001234432220100000899999862046
Q gi|254780206|r 180 EEYLE---GFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQ 256 (424)
Q Consensus 180 Eefl~---G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~ 256 (424)
||||+ |.|+.+.++ +|+ ++. ..+.+..-.+......+||. ..|. ++.+++ .++.. ++.+..|
T Consensus 81 qefI~~~~~~dirv~vi-~~~-~~~--~~~~~~~~~~~~~n~~~g~~--~~~~-----~l~~e~-~e~a~---~a~~alg 145 (190)
T pfam08443 81 QEFIAEAGNRDIRCLVV-GGE-VVG--AIHRQSNEGDFRTNLHRGGV--AEPY-----QLSQEE-EEIAI---KAAQAMG 145 (190)
T ss_pred EEEEECCCCCEEEEEEE-CCC-EEE--EEEEECCCCCCCCCCCCCCE--ECCC-----CCCHHH-HHHHH---HHHHHHC
T ss_conf 55660478854899996-063-367--89997466762143246862--4587-----668899-99999---9999738
Q ss_pred CEEEEEEEEEEEEECCEEEEEEEEEEECCC
Q ss_conf 235664454489855704899988651477
Q gi|254780206|r 257 NPFQGVLFAGLMITEQGPYLIEYNVRFGDP 286 (424)
Q Consensus 257 ~~y~G~l~~~~m~t~~gp~viE~N~R~GDP 286 (424)
+.|.| ++|+.+++||+|||+|++.|=.
T Consensus 146 l~~~g---VD~~~~~~g~~vlEvN~~Pg~~ 172 (190)
T pfam08443 146 LDVLG---VDIFRSKRGLLVCEVNSSPGLK 172 (190)
T ss_pred CCEEE---EEEEEECCCEEEEEECCCCCCH
T ss_conf 99799---9999979967999966984604
No 50
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=99.82 E-value=7.7e-21 Score=170.60 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=118.5
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-CCC
Q ss_conf 876531011112234401111121012420256304-653430002323567788878875144531777887752-057
Q gi|254780206|r 110 CTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKAD-GLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE-GFE 187 (424)
Q Consensus 110 l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~-~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~-G~E 187 (424)
|+++|||||+|..+++.+|+.++++++|||+||||. +.++|+|+.++++.+|+.++++... +.++++|||++ +.|
T Consensus 1 l~~~Giptp~~~~i~~~~d~~~~~~~iGyP~vvKp~~~G~~g~G~~~v~~~~el~~a~~~~~---~~~~liE~~I~~~~E 77 (171)
T pfam02222 1 LQKLGLPTPRFMAAESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEELG---GGPVIVEEFVPFDKE 77 (171)
T ss_pred CHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHCC---CCCEEEEEECCCCEE
T ss_conf 90209899995498999999999997099789996110258985289889999999998558---995799860467579
Q ss_pred CCEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 5234421577-631035200011135665444443443000012344322201000008999998620462356644544
Q gi|254780206|r 188 VSFFALCDGK-TAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAG 266 (424)
Q Consensus 188 ~Sv~~i~dG~-~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~ 266 (424)
+|+.+..+.. .+..+|+.+.+.+ +++.. -++.|.+ +++++.+++ +++.++++++ .+ |+|++.++
T Consensus 78 i~~~~~r~~~g~~~~~~~~e~~~~--~g~~~------~~~~Pa~-~~~~~~~~i-~~~a~ki~~a---Lg--~~G~~~ve 142 (171)
T pfam02222 78 LSVLVVRSVDGETAFYPPVETIQE--DGICH------ESVAPAR-VPDSQQAKA-QEIAKKIVDE---LG--GVGIFGVE 142 (171)
T ss_pred EEEEEEECCCCCEEECCCEEEEEE--CCEEE------EEECCCC-CCHHHHHHH-HHHHHHHHHH---CC--CCCEEEEE
T ss_conf 998743449998998035466886--78189------8742888-898999999-9999999998---39--70459999
Q ss_pred EEEECCE-EEEEEEEEEECC
Q ss_conf 8985570-489998865147
Q gi|254780206|r 267 LMITEQG-PYLIEYNVRFGD 285 (424)
Q Consensus 267 ~m~t~~g-p~viE~N~R~GD 285 (424)
|+++++| .||+|+|+|.-+
T Consensus 143 ff~~~dG~~~v~EvnpR~h~ 162 (171)
T pfam02222 143 LFVLPDGDLLVNELAPRPHN 162 (171)
T ss_pred EEECCCCCEEEEEECCCCCC
T ss_conf 99939997999996499677
No 51
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=99.81 E-value=9.8e-19 Score=155.40 Aligned_cols=351 Identities=21% Similarity=0.268 Sum_probs=237.2
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCCCEEEEE-CC-CHHHHHCCE---EEECCCCCHHHHHHHHHHHCCCEEEEC----C
Q ss_conf 589988658899999999858--996789995-49-835751170---551287898999999987189799997----9
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQS--PLLSELWSI-PG-NPGIAQHAQ---CVAIDIQNHSAIIHFCQEKHIDLVVVG----P 70 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s--~~~~~v~~~-pg-N~g~~~~~~---~~~i~~~d~~~i~~~a~~~~iDlvivg----p 70 (424)
+|.|||+| =|+|.+.++ +.--++++. |. |+-..++++ .+.....|.+++.++|+.- |.+=.- +
T Consensus 1 ~vGilGGG----QLG~M~~~aA~~LG~~~~VL~~~~~~PA~q~Ad~~~~v~a~~~d~~~i~~La~~c--DviT~E~Ehv~ 74 (386)
T TIGR01161 1 TVGILGGG----QLGRMLALAAKKLGIKVAVLDPDANSPAKQVADSREHVLASFTDPEAIRELAEAC--DVITFEFEHVD 74 (386)
T ss_pred CEEEEECC----HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHC--CEEEEEECCCC
T ss_conf 96897188----4899999987127958998548989731112898557998514878999999765--65543101378
Q ss_pred CHHHHHHHHHHHHHCC--CCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHCCCCEEEEEEC-
Q ss_conf 5578748998986058--80670106665552010235788876531011112234--401111121012420256304-
Q gi|254780206|r 71 ELPLVNGISDALNAAG--FKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFS--DPMKAKQYVQNKSMPIVVKAD- 145 (424)
Q Consensus 71 E~pL~~gi~d~l~~~g--i~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~--~~~ea~~~~~~~g~PvVVKp~- 145 (424)
+..| |.|...| ++++ |+..+-.+-.||...|++|+++|+|||+|..+. +.++.....+++|+|+|||..
T Consensus 75 ~~~L-----~~L~~~g~~~~~~-P~~~~l~~~~dk~~qK~~L~~~g~~vp~f~~~~~~~~~~~~~~~~~~g~p~VlK~~~ 148 (386)
T TIGR01161 75 VEAL-----EKLEARGDKVKVR-PSPEALAIIQDKLTQKQFLQKLGLPVPPFVVIEIKDEEELDSALQELGFPVVLKARR 148 (386)
T ss_pred CHHH-----HHHHHCCCEEEEE-CCHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 5678-----9998359847760-388999988365899999996689988412022368425789998739847998420
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6534300023235677888788751445317778877520-575234421--5776310352000111356654444434
Q gi|254780206|r 146 GLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEG-FEVSFFALC--DGKTAIPFTTARDHKRIHDGDIGPNTGG 222 (424)
Q Consensus 146 ~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G-~E~Sv~~i~--dG~~~~~l~~~~dyKr~~~~d~GpnTGG 222 (424)
+..-|||++++++.+++..+++.. ++...+++||||+.= .|+||.+.- +|+ +.+.|.++.+- .+|.|-=
T Consensus 149 gGYDGrGq~~i~~~~~~~~~~~~~-~~~~~~~~~E~fV~F~~Elsv~vaR~~~G~-~~~YP~ven~~---~ddagIl--- 220 (386)
T TIGR01161 149 GGYDGRGQFVIKSEADLPQALKEL-GDKEEELIVEEFVPFERELSVIVARSADGE-IAFYPVVENIH---QDDAGIL--- 220 (386)
T ss_pred CCCCCCCCEEECCHHHHHHHHHHC-CCCCEEEEEEECCCCCEEEEEEEEECCCCC-EEECCCEEEEE---ECCCCEE---
T ss_conf 652773108974743288999852-888405898523562006999999778974-88828612356---5277877---
Q ss_pred CCEEECCCCCCCCC---CEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEE--CCE-----EEEEEEEEEECCCCCEEEE
Q ss_conf 43000012344322---2010000089999986204623566445448985--570-----4899988651477510443
Q gi|254780206|r 223 MGACSPALGMSQEL---YSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMIT--EQG-----PYLIEYNVRFGDPECQAMM 292 (424)
Q Consensus 223 MGa~~p~~~~~~~~---~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t--~~g-----p~viE~N~R~GDPE~q~il 292 (424)
-=+|.|+|-+++.+ ..++ +++....++ .++|.|++-++|=+| .+| .=|=|+-.|-=+--==+|-
T Consensus 221 ~~~~aPAPa~p~~~~Q~~~~A-~~~A~~~~~-----~L~~VG~~avE~F~~Pa~dGP~P~~LLvNElAPR~HNSGHyTlD 294 (386)
T TIGR01161 221 RLVVAPAPAVPDALVQQQKKA-QELARRLAE-----ELDYVGVLAVEMFLLPAKDGPEPDELLVNELAPRPHNSGHYTLD 294 (386)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHHHHHH-----HCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 898633777834578999999-999999998-----61961788899983068878951205661025788984126566
Q ss_pred ECCCCCCHHHHHHHHHCCCCC--CCCCCCC-CCEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCEEEEEEEEEECCEEE
Q ss_conf 326544115666542013333--2123444-420675422544668775797-624876668986899833587788799
Q gi|254780206|r 293 MRLESDILEILNSCVHGNLHN--THINWKA-EYALTVVVATKGYPEEYPHGT-IISKIPQNTGTTQLFHAGTAIVNNNLT 368 (424)
Q Consensus 293 p~L~~dl~~il~~~~~g~L~~--~~~~~~~-~~~v~Vvlas~GYP~~~~kg~-~I~~l~~~~~~~~ifhagt~~~~g~l~ 368 (424)
---.|-|=..|-++++--|.+ ..+.+-. .+.|.=+|=..+| ..+.... .+..++. ...++|+-.=.
T Consensus 295 gc~tSQFE~hLRAi~~LPLg~~~t~~~~PTT~~~MVNlLG~~~~-~~~~~~~~~~~~~P~--a~lhwYGK~E~------- 364 (386)
T TIGR01161 295 GCSTSQFEQHLRAILGLPLGSIFTELLLPTTQAVMVNLLGTEGP-DEVAPLWEELLALPG--AKLHWYGKAEV------- 364 (386)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-CHHHHHHHHHHHCCC--CEEEEECCEEE-------
T ss_conf 54331799999997088987444100278430578988335676-266788999973898--47887546003-------
Q ss_pred ECCCC-EEEEEEECCCHHHHHH
Q ss_conf 81880-7999996289899999
Q gi|254780206|r 369 ANGGR-VLSATALGKTITESRE 389 (424)
Q Consensus 369 t~GGR-VL~vv~~g~~l~eA~~ 389 (424)
--|| +-.||-.+.|.+++.+
T Consensus 365 -RpgRK~GH~n~~~~~~~~~~~ 385 (386)
T TIGR01161 365 -RPGRKVGHVNLVGSDLEELEQ 385 (386)
T ss_pred -CCCCCEEEEEECCCCHHHHCC
T ss_conf -789610168633868355304
No 52
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=3.1e-18 Score=151.80 Aligned_cols=225 Identities=19% Similarity=0.247 Sum_probs=157.0
Q ss_pred HHCCCEEEE---CCCHHHHHH-HHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC----HHHHH
Q ss_conf 718979999---795578748-9989860588067010666555201023578887653101111223440----11111
Q gi|254780206|r 60 EKHIDLVVV---GPELPLVNG-ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDP----MKAKQ 131 (424)
Q Consensus 60 ~~~iDlviv---gpE~pL~~g-i~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~----~ea~~ 131 (424)
-.++|.+|+ |+.- .+| +...|+..|+|+.|+...++.+.+||.++|.+++..++|++.|..++.. ....+
T Consensus 59 ~~~~~vvfp~lhG~~g--EDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~ 136 (317)
T COG1181 59 LQKADVVFPVLHGPYG--EDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEE 136 (317)
T ss_pred HCCCCEEEEECCCCCC--CCCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHH
T ss_conf 0269877871558888--87069999997099876076445332350999988998678651235675334520478887
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCC--CCCC-
Q ss_conf 2101242025630465343000232356778887887514453177788775205752344215776310352--0001-
Q gi|254780206|r 132 YVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTT--ARDH- 208 (424)
Q Consensus 132 ~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~--~~dy- 208 (424)
+....+||++|||+.+-++-|+..+++.+|...+++.+| ..+.++++|+|+.|.|+.|.++.+......+++ ...-
T Consensus 137 ~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~-~~d~~vl~e~~~~~rei~v~vl~~~~~~~~l~~~eI~~~~ 215 (317)
T COG1181 137 VEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAF-KYDRDVLREQGITGREIEVGVLGNDYEEQALPLGEIPPKG 215 (317)
T ss_pred HHCCCCCCEEEECCCCEEEEEEEECCEECCHHHHHHHHH-HHCCCCEECCCCCCCEEEEEECCCCCCCEECCCCEEECCC
T ss_conf 741468878998587311367998835043699999999-8478512003776655898635886552444761681699
Q ss_pred CCCCCCCCC-CCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC--CEEEEEEEEEEECC
Q ss_conf 113566544-444344300001234432220100000899999862046235664454489855--70489998865147
Q gi|254780206|r 209 KRIHDGDIG-PNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE--QGPYLIEYNVRFGD 285 (424)
Q Consensus 209 Kr~~~~d~G-pnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~--~gp~viE~N~R~GD 285 (424)
.+.|+.+.- -.|||-=-.+|. .+++++.+ ++.+-.+++.+..++ .|+..+|||+++ +.++++|+|+..|
T Consensus 216 ~~fydye~Ky~~~gg~~~~~pa-~lt~~~~~----~i~~lA~~a~~alg~--~g~~rvDf~~~~~~g~~~l~EvNt~PG- 287 (317)
T COG1181 216 EEFYDYEAKYLSTGGAQYDIPA-GLTDEIHE----EIKELALRAYKALGC--LGLARVDFFVDDDEGEFVLLEVNTNPG- 287 (317)
T ss_pred CEEEEEECCCCCCCCCEEECCC-CCCHHHHH----HHHHHHHHHHHHCCC--CCEEEEEEEEECCCCCEEEEEEECCCC-
T ss_conf 8698600014578984353788-99988999----999999999986088--875888799987899899998708998-
Q ss_pred CCCEEEEECC
Q ss_conf 7510443326
Q gi|254780206|r 286 PECQAMMMRL 295 (424)
Q Consensus 286 PE~q~ilp~L 295 (424)
.-...+.|.+
T Consensus 288 ~t~~sl~P~~ 297 (317)
T COG1181 288 MTAMSLFPKA 297 (317)
T ss_pred CCCCCCCHHH
T ss_conf 7653537677
No 53
>PRK06849 hypothetical protein; Provisional
Probab=99.78 E-value=3.5e-17 Score=144.19 Aligned_cols=258 Identities=17% Similarity=0.163 Sum_probs=173.1
Q ss_pred CEEEEECCCHH-HHHHHHHHHHCCCCCEEEEECCCH----HHHH-CCEEEECC-CC-C----HHHHHHHHHHHCCCEEEE
Q ss_conf 95899886588-999999998589967899954983----5751-17055128-78-9----899999998718979999
Q gi|254780206|r 1 MRVLLIGSGGR-EHALAWKIAQSPLLSELWSIPGNP----GIAQ-HAQCVAID-IQ-N----HSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 1 MkILviGsGgr-EhAl~~~l~~s~~~~~v~~~pgN~----g~~~-~~~~~~i~-~~-d----~~~i~~~a~~~~iDlviv 68 (424)
++|||-|.-.. .-.||..|.+.+. .|+++.-++ ..+. ....+.+. +. | .+++++++++++||++||
T Consensus 5 ~tvLiTg~r~~~aL~laR~l~~~Gh--~V~~aD~~~~~l~r~Sr~v~~~~~vP~P~~d~~~y~~~Ll~Iv~~e~idl~IP 82 (387)
T PRK06849 5 KTVLITGARAPAALQLARSFHNAGH--TVILADSLKYPLSRFSRAVDGFYTIPSPKWDPNAYIQALLSIVKRHNIDLLIP 82 (387)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCC--EEEEECCCCCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7799958860789999999987899--79998489877542000011279869997898999999999999838999997
Q ss_pred CCCHH-HHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC-CCCEEEEEECC
Q ss_conf 79557-87489989860588067010666555201023578887653101111223440111112101-24202563046
Q gi|254780206|r 69 GPELP-LVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQN-KSMPIVVKADG 146 (424)
Q Consensus 69 gpE~p-L~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~-~g~PvVVKp~~ 146 (424)
-.|+- ..+-..+.|. ....+|.|..+..+.--||.-.-+++.+.|+|+|+...++|.+++..+... .+.|+|+||.+
T Consensus 83 ~~eev~~~a~~~~~l~-~~~~~~~~d~~~l~~LhdK~~F~~~a~~lGl~vP~T~~i~s~edv~~~~~~~~~~~~ilKPv~ 161 (387)
T PRK06849 83 TCEEVFYLSLAKEELS-AYCHVFHFDFDLLLMLHNKFEFIQQARSLGLSAPKTYLITDPEAIINFDFKTPHTPYVLKPIY 161 (387)
T ss_pred CCCHHHHHHHHHHHCC-CCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCCEEECCCC
T ss_conf 7768999986576447-676376589999998644899999999749999988981899999865533668978982376
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 53430002323567788878875144531777887752057523442157763103520001113566544444344300
Q gi|254780206|r 147 LCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGAC 226 (424)
Q Consensus 147 ~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~ 226 (424)
..+|++|....+.++ ++..--....+.+++|||.|.|++..++++..+++.... |++.+..+. |+
T Consensus 162 ~~~~~~v~~~~~~~~----l~~l~~s~~~p~v~Qe~I~G~~~ct~al~~~Gkv~A~~~---y~~~~~~~~-------g~- 226 (387)
T PRK06849 162 SRFVRRVDLTKTKAA----VLKLPISHKSPWIMQEFIPGQEYCSYSIVRSGELRAHSC---YKPEFTAGL-------GA- 226 (387)
T ss_pred CCCCCEEEECCCHHH----HHCCCCCCCCCEEEEEECCCCEEEEEEEEECCEEEEEEE---EECCEECCC-------CE-
T ss_conf 665333652159778----615887667982899871696758999978999999998---204220588-------40-
Q ss_pred ECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEEC
Q ss_conf 00123443222010000089999986204623566445448985570-48999886514
Q gi|254780206|r 227 SPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFG 284 (424)
Q Consensus 227 ~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~G 284 (424)
+-. + +...+.-+.+.++..++. +.|+|++-++||.+++| +|+||.|.|.-
T Consensus 227 ~v~--f-e~v~~p~i~e~v~~f~~~-----~~~tG~isFDFI~~~dG~~~~IECNPR~t 277 (387)
T PRK06849 227 QIA--F-QPINNPRIEEFVTHFVKE-----LNYTGQISFDFIQTENGDAYPIECNPRTT 277 (387)
T ss_pred EEE--E-EECCCHHHHHHHHHHHHH-----CCCEEEEEEEEEECCCCCEEEEEECCCCC
T ss_conf 578--8-975888999999999984-----78515899999998999889998459866
No 54
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.77 E-value=1e-17 Score=148.05 Aligned_cols=274 Identities=19% Similarity=0.272 Sum_probs=179.0
Q ss_pred CEEEEECCCHHHH---HHHHHHHHCCCCCEEEEE-CCCHHHHHC--CEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCH
Q ss_conf 9589988658899---999999858996789995-498357511--7055128789899999998718979999--7955
Q gi|254780206|r 1 MRVLLIGSGGREH---ALAWKIAQSPLLSELWSI-PGNPGIAQH--AQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPEL 72 (424)
Q Consensus 1 MkILviGsGgrEh---Al~~~l~~s~~~~~v~~~-pgN~g~~~~--~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~ 72 (424)
|||.|++..++-+ .|..+..+-.. ++.+. |-.-.+... ...+...-.+ -...|.+++ ||..
T Consensus 1 mki~iLs~~~~~yst~RL~eaa~~rGh--~v~vidp~~~~~~i~~~~~~v~~~g~~---------L~~~DavipR~g~~~ 69 (300)
T PRK10446 1 MKIAILSRDGTLYSCKRLREAAIQRGH--LVEILDPLSCYMNINPAASSIHYKGRK---------LPHFDAVIPRIGTAI 69 (300)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEEHHHCEEEECCCCCEEEECCEE---------CCCCCEEEECCCCCC
T ss_conf 979999369976079999999998799--599961489189824898649989808---------687888998267774
Q ss_pred H-HHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC-CCEEEEEECCCCCC
Q ss_conf 7-874899898605880670106665552010235788876531011112234401111121012-42025630465343
Q gi|254780206|r 73 P-LVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNK-SMPIVVKADGLCAG 150 (424)
Q Consensus 73 p-L~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~-g~PvVVKp~~~agG 150 (424)
- ....+...|+..|++|+ -+.++.....||.++-.+|.++|||+|+...+.+.+++.++++.+ ++|+|+||-..+.|
T Consensus 70 t~~~~~vLr~lE~~Gv~vi-N~~~aI~~~~DKl~t~qlL~~~gip~P~T~~~~~~~~~~~~i~~~gg~PvViKpl~Gs~G 148 (300)
T PRK10446 70 TFYGTAALRQFEMLGSYPL-NESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQG 148 (300)
T ss_pred CHHHHHHHHHHHHCCCCEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 5589999999998899186-489999985769999999987597999889836999999999980899789996789886
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---CCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCC--CCCCC
Q ss_conf 0002323567788878875144531777887752---057523442157763103520001113-56654444--43443
Q gi|254780206|r 151 KGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE---GFEVSFFALCDGKTAIPFTTARDHKRI-HDGDIGPN--TGGMG 224 (424)
Q Consensus 151 kGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~---G~E~Sv~~i~dG~~~~~l~~~~dyKr~-~~~d~Gpn--TGGMG 224 (424)
+||.++++.+.+...++... ..+..++++||+. |..+-++++ +| +++. .. +|. .++|-=-| .||
T Consensus 149 ~GV~l~e~~~~~~~i~~~~~-~~~~~~~iQeyI~~~~g~D~Rv~vv-gg-~vva--am---~R~~~~g~~rtN~~~Gg-- 218 (300)
T PRK10446 149 IGVVLAETRQAAESVIDAFR-GLNAHILVQEYIKEAQGCDIRCLVV-GD-EVVA--AI---ERRAKEGDFRSNLHRGG-- 218 (300)
T ss_pred CCEEEEECHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCEEEEEE-CC-EEHH--HE---EEECCCCCEEEEEECCC--
T ss_conf 03699737899999999886-2287377522025557986799999-98-6244--38---99737883477770397--
Q ss_pred EEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHH
Q ss_conf 00001234432220100000899999862046235664454489855704899988651477510443326544115666
Q gi|254780206|r 225 ACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILN 304 (424)
Q Consensus 225 a~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~ 304 (424)
...|.+ ++ ++. .++...+.+++ |..|.| +|++.+++||+|+|+|. -|+++-+-..-..|....+.
T Consensus 219 ~~~~~~-l~----~e~-~~la~~a~~~l---gl~~~G---VDii~~~~g~~v~EVN~---~Pg~~gi~~~tgvdiA~~Ii 283 (300)
T PRK10446 219 AASVAS-IT----PQE-REIAIKAARTM---ALDVAG---VDILRANRGPLVMEVNA---SPGLEGIEKTTGIDIAGKMI 283 (300)
T ss_pred EEEECC-CC----HHH-HHHHHHHHHHH---CCCEEE---EEEEEECCCCEEEEECC---CHHHHHHHHHHCCCHHHHHH
T ss_conf 765328-99----999-99999999986---996899---99988289988999938---74278898875989899999
Q ss_pred HHHHCCC
Q ss_conf 5420133
Q gi|254780206|r 305 SCVHGNL 311 (424)
Q Consensus 305 ~~~~g~L 311 (424)
..++.+-
T Consensus 284 ~~ie~~~ 290 (300)
T PRK10446 284 RWIERHA 290 (300)
T ss_pred HHHHHHC
T ss_conf 9999767
No 55
>KOG0370 consensus
Probab=99.77 E-value=2.8e-17 Score=144.82 Aligned_cols=289 Identities=18% Similarity=0.325 Sum_probs=206.8
Q ss_pred EEEECCC------HHHH---H--HHHHHHHCCCCCEEEEECCCHHHHH----CCEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 8998865------8899---9--9999985899678999549835751----1705512878989999999871897999
Q gi|254780206|r 3 VLLIGSG------GREH---A--LAWKIAQSPLLSELWSIPGNPGIAQ----HAQCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 3 ILviGsG------grEh---A--l~~~l~~s~~~~~v~~~pgN~g~~~----~~~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
++|+||| .-|. | -++.|++-.. +.+..+=||.|.. .++..+++...+|.+.++-..++...+|
T Consensus 921 ~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~--kTimvNyNPETVSTDyDecdrLYFeeis~E~vmDiYe~E~~~G~i 998 (1435)
T KOG0370 921 VMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGK--KTIMVNYNPETVSTDYDECDRLYFEEISYERVMDIYELENSEGII 998 (1435)
T ss_pred EEEECCCCEECCCCEEECHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 599724325635620551335547999997098--469995686543575677766767542366534355430677269
Q ss_pred E--CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf 9--79557874899898605880670106665552010235788876531011112234401111121012420256304
Q gi|254780206|r 68 V--GPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKAD 145 (424)
Q Consensus 68 v--gpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~ 145 (424)
+ |-..|- .++=.|...|.+++|.+.+...-.-++...-..+.+.||-.|+|+..++.++|++|+++.||||+|+|+
T Consensus 999 is~GGQ~pn--NiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~VgYP~lvRPS 1076 (1435)
T KOG0370 999 ISVGGQLPN--NIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEEAKKFAEKVGYPVLVRPS 1076 (1435)
T ss_pred EEECCCCCC--HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCCEEECCC
T ss_conf 983684862--021375862886754885761114567789998877278861023322688999999865996685110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHC-CCCCEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65343000232356778887887514-45317778877520-575234421-5776310352000111356654444434
Q gi|254780206|r 146 GLCAGKGVVVAATVDEATSAIDRCFQ-QINSTVIIEEYLEG-FEVSFFALC-DGKTAIPFTTARDHKRIHDGDIGPNTGG 222 (424)
Q Consensus 146 ~~agGkGV~i~~~~~e~~~~~~~~~~-~~~~~VliEefl~G-~E~Sv~~i~-dG~~~~~l~~~~dyKr~~~~d~GpnTGG 222 (424)
+..+|-.+-++++.+|++.+++.+-. +.+++|+|-+|++| .|+.++++- ||+-+. +.+. +| + .+-|...|-
T Consensus 1077 YVLSGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie~AkEidvDAVa~~G~~~~-haiS-EH--v--EnAGVHSGD 1150 (1435)
T KOG0370 1077 YVLSGAAMNVVYSESDLKSYLEQASAVSPDHPVVISKFIEGAKEIDVDAVASDGKVLV-HAIS-EH--V--ENAGVHSGD 1150 (1435)
T ss_pred CEECCHHHHHHHCHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCEECHHHHCCCCEEEE-EEHH-HH--H--HCCCCCCCC
T ss_conf 1331015552104788999999776408779777277544450103123104781899-8623-34--1--124655786
Q ss_pred CCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEEC--CCCCEEEEECCCCCCH
Q ss_conf 43000012344322201000008999998620462356644544898557048999886514--7751044332654411
Q gi|254780206|r 223 MGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFG--DPECQAMMMRLESDIL 300 (424)
Q Consensus 223 MGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~G--DPE~q~ilp~L~~dl~ 300 (424)
---+.|+-.+++...+++ ..|..++.++++. .|....|+|..+|..+|||-|.|-. -| -+--.|.-||+
T Consensus 1151 Atlv~Ppq~l~~~t~~ri-k~i~~ki~~a~~i-----tGPfN~Q~i~k~n~lkVIECN~RaSRSFP---FvSKtlgvdfi 1221 (1435)
T KOG0370 1151 ATLVLPPQDLSADTLERI-KDIAAKVAKALKI-----TGPFNMQIIAKDNELKVIECNVRASRSFP---FVSKTLGVDFI 1221 (1435)
T ss_pred EEEECCCHHCCHHHHHHH-HHHHHHHHHHHCC-----CCCCEEEEEECCCEEEEEEEEEEEECCCC---CEEHHCCCHHH
T ss_conf 037578112498899999-9999999888616-----68743799954980789996403433666---30010583199
Q ss_pred HHHHHHHHCC
Q ss_conf 5666542013
Q gi|254780206|r 301 EILNSCVHGN 310 (424)
Q Consensus 301 ~il~~~~~g~ 310 (424)
++--+++-|.
T Consensus 1222 ~~At~~i~g~ 1231 (1435)
T KOG0370 1222 ALATRAIMGV 1231 (1435)
T ss_pred HHHHHHHHCC
T ss_conf 9988997389
No 56
>KOG0368 consensus
Probab=99.66 E-value=3.8e-14 Score=122.20 Aligned_cols=338 Identities=14% Similarity=0.241 Sum_probs=215.1
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC-
Q ss_conf 87898999999987189799997----9557874899898605880670106665552010235788876531011112-
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHIDLVVVG----PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ- 121 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iDlvivg----pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~- 121 (424)
+.-|.+.|++.|++..+|.|+.| +|.|. +.+.|.+.||-.+||+..+-+--+||+-.--+.+.+++||-+|.
T Consensus 122 NyANVdlIvdiAe~~~VdAVWaGWGHASENP~---LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSG 198 (2196)
T KOG0368 122 NYANVDLIVDIAERTDVDAVWAGWGHASENPE---LPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSG 198 (2196)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC---HHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 73018999988874355357615554456842---578897679289889467777632168778988754997214468
Q ss_pred -------------------------CCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCH
Q ss_conf -------------------------234401111121012420256304653430002323567788878875144-531
Q gi|254780206|r 122 -------------------------HFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ-INS 175 (424)
Q Consensus 122 -------------------------~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~-~~~ 175 (424)
.+.|.+|+++.++.+|||+.||++-..||||++-|.+.||....+..+-.+ .++
T Consensus 199 S~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~EvPGS 278 (2196)
T KOG0368 199 SGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEVPGS 278 (2196)
T ss_pred CCCEEEEEECCCCEEECCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
T ss_conf 86314455056762735789865343088889999998629836999545789766130456678999999998558999
Q ss_pred HHHHHHHHHCC-CCCEEEECC--CCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHH
Q ss_conf 77788775205-752344215--77631035----200011135665444443443000012344322201000008999
Q gi|254780206|r 176 TVIIEEYLEGF-EVSFFALCD--GKTAIPFT----TARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPT 248 (424)
Q Consensus 176 ~VliEefl~G~-E~Sv~~i~d--G~~~~~l~----~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~ 248 (424)
++.+=+...+- -+.++.++| |+.+-.+. +-|-|.++-|. +|+...+++..++. +..
T Consensus 279 PIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEE------------APatIap~etf~~M-----e~~ 341 (2196)
T KOG0368 279 PIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEE------------APATIAPPETFKKM-----EQA 341 (2196)
T ss_pred CEEHHHHCCCCCEEEEEHHHHHHCCEEEEECCCCHHHHHHHHHHHH------------CCCCCCCHHHHHHH-----HHH
T ss_conf 5552003367540210022453087877743662377877788761------------88541788999999-----999
Q ss_pred HHHHHHCCCEEEEEEEEEEE--EECCEEEEEEEEEEE--CCCCCEEE----EECC------CCCC------HHHHHHHHH
Q ss_conf 99862046235664454489--855704899988651--47751044----3326------5441------156665420
Q gi|254780206|r 249 IEGMQKEQNPFQGVLFAGLM--ITEQGPYLIEYNVRF--GDPECQAM----MMRL------ESDI------LEILNSCVH 308 (424)
Q Consensus 249 ~~~l~~~~~~y~G~l~~~~m--~t~~gp~viE~N~R~--GDPE~q~i----lp~L------~~dl------~~il~~~~~ 308 (424)
.-.|.+. ..|.+---++.. -+++.-|.||.|+|| --|-|+-| ||-. .-+| -.+.-.-..
T Consensus 342 AvrLak~-VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~ 420 (2196)
T KOG0368 342 AVRLAKL-VGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPT 420 (2196)
T ss_pred HHHHHHH-HCCEECCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCC
T ss_conf 9999876-361113368999725898179996276302467752555157860899999859851005488997089999
Q ss_pred CCCCCCCCCC-----CCCCEEEEEECCCCCCC---CCCCCCCCCCCC-CCCCCCEEEEEEEEEECCEE-EECCCCEEEEE
Q ss_conf 1333321234-----44420675422544668---775797624876-66898689983358778879-98188079999
Q gi|254780206|r 309 GNLHNTHINW-----KAEYALTVVVATKGYPE---EYPHGTIISKIP-QNTGTTQLFHAGTAIVNNNL-TANGGRVLSAT 378 (424)
Q Consensus 309 g~L~~~~~~~-----~~~~~v~Vvlas~GYP~---~~~kg~~I~~l~-~~~~~~~ifhagt~~~~g~l-~t~GGRVL~vv 378 (424)
|. +.++++. -++.|+..=+.|+. |+ ++.+|.. ..++ ....+.|=|++ + ..+|.+ -=..+---.+-
T Consensus 421 Gd-S~idfe~~~~p~pkgHciA~RITsEd-PddgFkPSsG~v-~eLnFrSssnvWgYFS-V-~~~g~iHeFadSQFGHiF 495 (2196)
T KOG0368 421 GD-SPIDFENAKLPCPKGHCIAARITSED-PDDGFKPSSGTV-QELNFRSSSNVWGYFS-V-GNGGGIHEFADSQFGHIF 495 (2196)
T ss_pred CC-CCCCHHHCCCCCCCCEEEEEEEECCC-CCCCCCCCCCEE-EEECCCCCCCCEEEEE-E-CCCCCCEECCCCCCCEEE
T ss_conf 99-98771111378998418999863158-887758898706-8841477777148999-4-379850242433340146
Q ss_pred EECCCHHHHHHHHHHHHHCCCCCCCEECCHHHH
Q ss_conf 962898999999999985258999575351789
Q gi|254780206|r 379 ALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 (424)
Q Consensus 379 ~~g~~l~eA~~~ay~~i~~I~~~g~~yR~DIG~ 411 (424)
+.|++.++|+.+.--+++.+...|. ||+-+-+
T Consensus 496 a~Ge~R~eAi~nMv~aLKelsIRgd-FrT~VeY 527 (2196)
T KOG0368 496 AFGESRQEAIANMVVALKELSIRGD-FRTTVEY 527 (2196)
T ss_pred EECCCHHHHHHHHHHHHHHCEECCC-CCCHHHH
T ss_conf 6257689999999998876151466-7762899
No 57
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=99.61 E-value=5e-16 Score=135.79 Aligned_cols=123 Identities=24% Similarity=0.371 Sum_probs=104.3
Q ss_pred ECCCHHHHHHHHHHHHHCCCCEE-------------------------ECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 97955787489989860588067-------------------------01066655520102357888765310111122
Q gi|254780206|r 68 VGPELPLVNGISDALNAAGFKVF-------------------------GPSQRAAKLESSKSFAKKFCTKYGIPTATYQH 122 (424)
Q Consensus 68 vgpE~pL~~gi~d~l~~~gi~v~-------------------------Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~ 122 (424)
-||.. ..|+++-.+++||+. -.|.-+..|..||..+|++|+.+|+|.|+...
T Consensus 162 LGPST---~~Iv~eA~~R~IP~~rL~~g~~vqlGYG~~qkri~at~td~Ts~iav~iA~DK~lTK~iL~~~GvPVP~G~~ 238 (876)
T TIGR02068 162 LGPST---AAIVKEAEKRGIPYMRLSAGSLVQLGYGSKQKRIQATETDRTSAIAVEIACDKDLTKKILKAAGVPVPEGTV 238 (876)
T ss_pred CCCCH---HHHHHHHHHCCCCEEEECCCCEEECCCCCCCEEEEEECCCCCCEEEHHHHCCHHHHHHHHHHCCCCCCCCCH
T ss_conf 79877---899999973789868733764456057754303432002576501012223637899999847898888736
Q ss_pred CCCCHHHHHHHHCCC-CEEEEEECCCCCCCCCCC-HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHCCCCCEEEE
Q ss_conf 344011111210124-202563046534300023-235677888788751445-31777887752057523442
Q gi|254780206|r 123 FSDPMKAKQYVQNKS-MPIVVKADGLCAGKGVVV-AATVDEATSAIDRCFQQI-NSTVIIEEYLEGFEVSFFAL 193 (424)
Q Consensus 123 ~~~~~ea~~~~~~~g-~PvVVKp~~~agGkGV~i-~~~~~e~~~~~~~~~~~~-~~~VliEefl~G~E~Sv~~i 193 (424)
+.+.++|.++++.+| ||+||||-+...||||.+ ..+++|+..|++.+.+.+ .+.|+||.|+.|.++-+.++
T Consensus 239 ~~~~~~a~~aa~~~GG~PvViKP~DGn~GrGv~~ni~~r~e~e~AY~~A~~~Sk~~~ViVEr~i~G~dhRlLVV 312 (876)
T TIGR02068 239 VQSAEEAWEAAEDLGGYPVVIKPYDGNHGRGVTINIETRDEIESAYEAAKEESKTSEVIVERYIKGRDHRLLVV 312 (876)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEE
T ss_conf 67789999999971899689951779987437840777488999999998607866068987642762389999
No 58
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.58 E-value=6.6e-15 Score=127.71 Aligned_cols=196 Identities=22% Similarity=0.351 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHCCCCEE-------------------E-------CCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 787489989860588067-------------------0-------10666555201023578887653101111223440
Q gi|254780206|r 73 PLVNGISDALNAAGFKVF-------------------G-------PSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDP 126 (424)
Q Consensus 73 pL~~gi~d~l~~~gi~v~-------------------G-------p~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~ 126 (424)
|.+.=|+|+-...||.|= + .|+-|--++.||..+|.+++++|+|.|....+.+.
T Consensus 242 pya~ii~~ea~rrgi~vev~d~~~g~f~l~~ggr~i~creslSelTSAvAms~c~DK~lT~rll~~AG~~VP~~~~~~~~ 321 (547)
T TIGR03103 242 PYARIIVDEARRRGIEVEVLDAEGGLFRLSLGGRSIRCRESLSELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG 321 (547)
T ss_pred CHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 14688776898668648986388885897128906886120257888999887404999999999739989997456998
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCC------
Q ss_conf 11111210124202563046534300023-23567788878875144531777887752057523442157763------
Q gi|254780206|r 127 MKAKQYVQNKSMPIVVKADGLCAGKGVVV-AATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTA------ 199 (424)
Q Consensus 127 ~ea~~~~~~~g~PvVVKp~~~agGkGV~i-~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~------ 199 (424)
+++.+|++++| |+||||...-.||||.+ +.+.+++..|+..+.. .+..||||+|+.|.++-+.++ ||+-+
T Consensus 322 ~~~~~fl~~~G-~VVVKP~dGnqGrGVtvnl~t~eev~~A~~~A~~-~~~~VIVE~fi~G~D~RlLVI-ggkVVAAA~R~ 398 (547)
T TIGR03103 322 EAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQ-FCDRVLLERYVPGEDLRLVVI-DFEVVAAAVRR 398 (547)
T ss_pred HHHHHHHHHCC-CEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEE-CCEEEEEECCC
T ss_conf 99999998739-9997768788886158725999999999999997-599579998406971699999-99999998147
Q ss_pred -----------C-CCCCCCCCCCC--CCC-------C---------C--------------------CCCCCCCCEEECC
Q ss_conf -----------1-03520001113--566-------5---------4--------------------4444344300001
Q gi|254780206|r 200 -----------I-PFTTARDHKRI--HDG-------D---------I--------------------GPNTGGMGACSPA 229 (424)
Q Consensus 200 -----------~-~l~~~~dyKr~--~~~-------d---------~--------------------GpnTGGMGa~~p~ 229 (424)
+ -|.-.| -+|- ..+ | . ...|||- .
T Consensus 399 Pa~VvGDG~sTI~eLIe~q-nrrr~~~~g~esrI~lD~~t~~~L~~qG~tldSVp~~Ge~V~LR~nANLSTGGt-----a 472 (547)
T TIGR03103 399 PPEVIGDGRSSIRDLIEKQ-SRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGT-----I 472 (547)
T ss_pred CCEEEECCHHHHHHHHHHH-CCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCC-----E
T ss_conf 9679848662099998430-577556789975334699999999984998122588899999942660268985-----1
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC-CEE--EEEEEEEEEC
Q ss_conf 234432220100000899999862046235664454489855-704--8999886514
Q gi|254780206|r 230 LGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE-QGP--YLIEYNVRFG 284 (424)
Q Consensus 230 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~-~gp--~viE~N~R~G 284 (424)
-+..+++.-+..+-.+++-+..|++..| ++||+.+ ..| -+||.|.|.|
T Consensus 473 ----iDVTD~VHPe~~~~A~~AAraIGLdIaG---IDliv~DIs~P~~vIIEvNa~PG 523 (547)
T TIGR03103 473 ----HDVTEQLHPDLREAAERAARALDIPVVG---IDFLVPDVTGPDYVIIEANERPG 523 (547)
T ss_pred ----EECCCCCCHHHHHHHHHHHHHHCCCEEE---EEEEECCCCCCCEEEEEECCCCC
T ss_conf ----6145676989999999999973998556---89984268999818999778965
No 59
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=8.9e-14 Score=119.55 Aligned_cols=229 Identities=18% Similarity=0.323 Sum_probs=148.3
Q ss_pred HHHCCCEEEECCCHHH--HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC-
Q ss_conf 8718979999795578--7489989860588067010666555201023578887653101111223440111112101-
Q gi|254780206|r 59 QEKHIDLVVVGPELPL--VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQN- 135 (424)
Q Consensus 59 ~~~~iDlvivgpE~pL--~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~- 135 (424)
.....|.+++=...+. ..-+...++..|.+|+ .+..+.+..++|.++-.++.++++|+|+.....+.+++..++++
T Consensus 75 ~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~ 153 (318)
T COG0189 75 LLDELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEH 153 (318)
T ss_pred HCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 2036728997378604568999999987498687-887998763557999999996599999868965847889999974
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHCC--CCCEEEECCCCCCCCC-CCCCCCCC-
Q ss_conf 2420256304653430002323567-78887887514453177788775205--7523442157763103-52000111-
Q gi|254780206|r 136 KSMPIVVKADGLCAGKGVVVAATVD-EATSAIDRCFQQINSTVIIEEYLEGF--EVSFFALCDGKTAIPF-TTARDHKR- 210 (424)
Q Consensus 136 ~g~PvVVKp~~~agGkGV~i~~~~~-e~~~~~~~~~~~~~~~VliEefl~G~--E~Sv~~i~dG~~~~~l-~~~~dyKr- 210 (424)
+|||+|+||-..++|+||+.+.+.+ ++.+.++...+.....++++|||.=. ..-...+.| ..+... .. .|
T Consensus 154 ~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~-~~~~~~y~~----~R~ 228 (318)
T COG0189 154 LGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGG-GEVVAIYAL----ARI 228 (318)
T ss_pred CCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEEC-CEEEEEEEE----ECC
T ss_conf 689889964788886655994377656999999863455642986203476778739999989-999898712----004
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEE
Q ss_conf 35665444443443000012344322201000008999998620462356644544898557048999886514775104
Q gi|254780206|r 211 IHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQA 290 (424)
Q Consensus 211 ~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ 290 (424)
...+|-=.|++.=|...|.. +++ ++ +++..++..+| |..|.| +|++-+++|.+|+|+|.. |++..
T Consensus 229 ~~~~~~R~N~a~Gg~~e~~~-l~~----e~-~elA~kaa~~l---Gl~~~G---VDiie~~~g~~V~EVN~s---P~~~~ 293 (318)
T COG0189 229 PASGDFRSNLARGGRAEPCE-LTE----EE-EELAVKAAPAL---GLGLVG---VDIIEDKDGLYVTEVNVS---PTGKG 293 (318)
T ss_pred CCCCCCEEECCCCCEECCCC-CCH----HH-HHHHHHHHHHH---CCCEEE---EEEEEECCCEEEEEEECC---CCCCC
T ss_conf 77775201011575204536-999----99-99999999974---894799---999970896299998689---65235
Q ss_pred EEECCC-CCCHHHHHHHHH
Q ss_conf 433265-441156665420
Q gi|254780206|r 291 MMMRLE-SDILEILNSCVH 308 (424)
Q Consensus 291 ilp~L~-~dl~~il~~~~~ 308 (424)
-+.+.. .+...++...+.
T Consensus 294 ~i~~~~g~~~~~~~~~~ie 312 (318)
T COG0189 294 EIERVTGVNIAGLIIDAIE 312 (318)
T ss_pred CHHHCCCCCHHHHHHHHHH
T ss_conf 2143069767999999999
No 60
>KOG0370 consensus
Probab=99.55 E-value=8e-15 Score=127.11 Aligned_cols=366 Identities=17% Similarity=0.198 Sum_probs=217.9
Q ss_pred EEEEECCCHHH------------HHHHHHHHHCCCCCEEEEECCCHHHHH----CCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 58998865889------------999999985899678999549835751----17055128789899999998718979
Q gi|254780206|r 2 RVLLIGSGGRE------------HALAWKIAQSPLLSELWSIPGNPGIAQ----HAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsGgrE------------hAl~~~l~~s~~~~~v~~~pgN~g~~~----~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
||||+||||-- +| .++|+++ .+..+.+-| |-.|.+ +++.+.+-+...+.+-...+.+.+|.
T Consensus 379 kVlvlGSGGLsIGQAGEFDYSGsQA-iKAlkEe-~i~TiLiNP-NIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~ 455 (1435)
T KOG0370 379 KVLVLGSGGLSIGQAGEFDYSGSQA-IKALKEE-NIFTILINP-NIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDG 455 (1435)
T ss_pred EEEEECCCCCCCCCCCEEEEEHHHH-HHHHHHC-CCEEEEECC-CCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCE
T ss_conf 7999815873321240355407889-8765532-617999789-601000255521289995058799999988618773
Q ss_pred EEECCC--HHHHHHH----HHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 999795--5787489----9898605880670106665552010235788876531011112234401111121012420
Q gi|254780206|r 66 VVVGPE--LPLVNGI----SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP 139 (424)
Q Consensus 66 vivgpE--~pL~~gi----~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P 139 (424)
+.+..+ ..|..|+ ...|...|+++.|.+........|+.+.-.-|.+-+.+.+++...++.++|++++++++||
T Consensus 456 il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~aae~l~yp 535 (1435)
T KOG0370 456 ILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALEAAERLGYP 535 (1435)
T ss_pred EEEECCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 78842776544564353002100003415437875521231427889999876315056256676799999888862828
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCCEEEECCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 25630465343000232356778887887514453177788775205-752344215776310352-0001113566544
Q gi|254780206|r 140 IVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGF-EVSFFALCDGKTAIPFTT-ARDHKRIHDGDIG 217 (424)
Q Consensus 140 vVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~-E~Sv~~i~dG~~~~~l~~-~~dyKr~~~~d~G 217 (424)
++|++....||-|-..+.|++|+.+....+|.. ..+|++|+-+.|. |+..++.-|--...+-.. ...+ ...|
T Consensus 536 vivRaayalgglgSgfa~n~eeL~~l~~~a~a~-s~QilvekSlkGwkevEyevvrDa~~nciTvcnmen~-----Dplg 609 (1435)
T KOG0370 536 VIVRAAYALGGLGSGFANNEEELQDLAAQALAL-SPQILVEKSLKGWKEVEYEVVRDAYDNCITVCNMENF-----DPLG 609 (1435)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC-CCEEEEHHHHCCCCCEEEEEEECCCCCHHHHCCCCCC-----CCCE
T ss_conf 999999985376643344489999997643125-8615422332443434899980200040533577345-----7620
Q ss_pred CCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE--EEEEEEEEEECCCCCEEEEECC
Q ss_conf 44434430000123443222010000089999986204623566445448985570--4899988651477510443326
Q gi|254780206|r 218 PNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG--PYLIEYNVRFGDPECQAMMMRL 295 (424)
Q Consensus 218 pnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g--p~viE~N~R~GDPE~q~ilp~L 295 (424)
-.||--=.++|+-.++++..+-+...- ++-++..|+ .|=..+|.-+.... -+|||+|+||.--- .|..=
T Consensus 610 ihtGdSiVvapsqtlsd~ey~mlrtta----ikVirhlgv--vGEcniQyaL~p~s~~y~IiEVNarLSrss---aLASk 680 (1435)
T KOG0370 610 IHTGDSIVVAPSQTLSDEEYQMLRTTA----IKVIRHLGV--VGECNIQYALNPYSLEYRIIEVNARLSRSS---ALASK 680 (1435)
T ss_pred EECCCEEEEEECCCCCHHHHHHHHHCC----HHHEECCCC--CCCCCCEEEECCCCEEEEEEEEEEEEEEHH---HHHCC
T ss_conf 101650799614225768899987502----021102687--665653044166630479999875774013---44326
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE-ECCEEEECCCCE
Q ss_conf 5441156665420133332123444420675422544668775797624876668986899833587-788799818807
Q gi|254780206|r 296 ESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAI-VNNNLTANGGRV 374 (424)
Q Consensus 296 ~~dl~~il~~~~~g~L~~~~~~~~~~~~v~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~-~~g~l~t~GGRV 374 (424)
. -=+++-.-+++=.|..+-.+.++....+-..+= .+..+.-...++.= |..-|+- +.. .+.... -|
T Consensus 681 a-TgypLAy~aAKlalg~~lpe~~n~Vt~~T~AcF-----EpslDY~v~KiprW--Dl~kf~~-vs~~igssmK----Sv 747 (1435)
T KOG0370 681 A-TGYPLAYTAAKLALGIPLPELKNSVTKTTTACF-----EPSLDYCVVKIPRW--DLSKFQR-VSTEIGSSMK----SV 747 (1435)
T ss_pred C-CCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCC-----CCCHHHEEEECCCC--CHHHHHH-HHHHHCHHHH----HH
T ss_conf 7-667589999987048603467761125200145-----75320134405653--3787878-8876252565----24
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 999996289899999999998525
Q gi|254780206|r 375 LSATALGKTITESRELAYHMVENI 398 (424)
Q Consensus 375 L~vv~~g~~l~eA~~~ay~~i~~I 398 (424)
-.|-+.|.+++||.++|.+.++.=
T Consensus 748 gEvm~iGR~feea~QKalr~vd~~ 771 (1435)
T KOG0370 748 GEVMAIGRTFEEAFQKALRMVDPS 771 (1435)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 666622130799998877514923
No 61
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2; InterPro: IPR005862 The formation of isosinate, a precursor of adenylate and guanylate, from 5-phosphoribosyl 1-pyrophosphate in the de novo purine biosynthesis pathway is basically composed of 10 steps of reactions . Phosphoribosylglycinamide formyltransferase 2 (2.1.2 from EC) is an alternative enzyme to phosphoribosylglycinamide formyltransferase that catalyzes the third step in the de novo purine biosynthesis pathway. ; GO: 0016742 hydroxymethyl- formyl- and related transferase activity, 0009113 purine base biosynthetic process.
Probab=99.54 E-value=4.1e-13 Score=114.75 Aligned_cols=370 Identities=21% Similarity=0.310 Sum_probs=232.1
Q ss_pred EEEEECCC--HHHHHHHHHHHHCCCCCEEEEEC---CCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 58998865--88999999998589967899954---98357511705512878989999999871897999979557874
Q gi|254780206|r 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSIP---GNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 2 kILviGsG--grEhAl~~~l~~s~~~~~v~~~p---gN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
++|++|+| |+|-++. +++-. .++.... +-|.+......+.++..|.+.+...++..++|++++-.+..-..
T Consensus 1 ~~~l~g~g~~g~~~~~~--~~~lg--~~~~~~d~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~p~~~~p~~~~~~~~ 76 (407)
T TIGR01142 1 RVLLLGSGELGKEVAIE--AQRLG--VEVIAVDRYADAPALQVAHRSYVIDLLDGDALRAVIEREKPDYIVPEIEAIATD 76 (407)
T ss_pred CEEEECCCCCCHHHHHH--HHHCC--CEEEEECCCCCCCHHHHHHHHHHEECCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 94661376533144444--54347--126873354576213332111100002678999998750674100024455466
Q ss_pred HHHHHHHHCC---CCEEECCHHHHHHHHCCHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 8998986058---80670106665552010235788-8765310111122344011111210124202563046534300
Q gi|254780206|r 77 GISDALNAAG---FKVFGPSQRAAKLESSKSFAKKF-CTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKG 152 (424)
Q Consensus 77 gi~d~l~~~g---i~v~Gp~~~aa~le~sK~~~K~~-l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkG 152 (424)
....+++.| ..++ |+.+++++..++...|++ .++.++||..|...++.++..+....+|||+++||...++|+|
T Consensus 77 -~l~~~~~~gg~c~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~p~~~~p~~~~~g~g 154 (407)
T TIGR01142 77 -ALLELEAEGGECYTVV-PTARATKLTLNREGLRRLAAEELGLPTAPYEFADSLEELREAVEKIGFPCVVKPVLSSSGKG 154 (407)
T ss_pred -HHHHHHHCCCCEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCC
T ss_conf -6776652488246640-35202221210567787767763254220011101788999998607750001221146665
Q ss_pred CCCHHHHHHHHHHHHHHH-----CC---CCHHHHHHHHHHC-CCCCEEEEC--CC--C-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 023235677888788751-----44---5317778877520-575234421--57--7-631035200011135665444
Q gi|254780206|r 153 VVVAATVDEATSAIDRCF-----QQ---INSTVIIEEYLEG-FEVSFFALC--DG--K-TAIPFTTARDHKRIHDGDIGP 218 (424)
Q Consensus 153 V~i~~~~~e~~~~~~~~~-----~~---~~~~VliEefl~G-~E~Sv~~i~--dG--~-~~~~l~~~~dyKr~~~~d~Gp 218 (424)
-.++.+.++...+++.+. .. ...++++|+|++- .|++...+. +| . ...+-|.- | +-.++|.
T Consensus 155 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~g--~-~~~~g~~-- 229 (407)
T TIGR01142 155 QSVVRGPEDLEKAWEYAKGHQVQEGGRGGAGRVIVEEFIDFDYEITLLTVRAVDGNGPLTTFCAPIG--H-RQEDGDY-- 229 (407)
T ss_pred CEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHEEEECCCCCCEEEECCCCC--C-CCCCCCC--
T ss_conf 3000473456788766504310113455556245520013102110000000277775011013224--3-0015540--
Q ss_pred CCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEEC--CC
Q ss_conf 4434430000123443222010000089999986204623566445448985570489998865147751044332--65
Q gi|254780206|r 219 NTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMR--LE 296 (424)
Q Consensus 219 nTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~--L~ 296 (424)
.-++.|.. ++....++. +.+.+....++. -.|++.+++++..+..+.-|+..|.-|.-...++.. --
T Consensus 230 ----~~~w~p~~-~~~~~~~~~-~~~~~~~~~~lg-----g~g~~g~~~~~~g~~~~~~~~~p~p~~~g~~~~~~~pp~~ 298 (407)
T TIGR01142 230 ----HESWQPQE-LSEKALEEA-KRIAKRVTDALG-----GYGLFGVELFVKGDEVWFSEVSPRPHDTGLVTLISQPPDL 298 (407)
T ss_pred ----HHCCCCHH-HHHHHHHHH-HHHHHHHHHHHC-----CCCEEEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCCC
T ss_conf ----00146212-217889999-999988887634-----6640014456516613542046676665137874068872
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC----------CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCE
Q ss_conf 4411566654201333321234444206754225----------446687757976248766689868998335877887
Q gi|254780206|r 297 SDILEILNSCVHGNLHNTHINWKAEYALTVVVAT----------KGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNN 366 (424)
Q Consensus 297 ~dl~~il~~~~~g~L~~~~~~~~~~~~v~Vvlas----------~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~ 366 (424)
+.| .+-...+-|- .+.-+|-+++.....+.+ .++-..+....+...+... ..+-+. ....-|+
T Consensus 299 ~~~-~~~~~~~~g~--p~~g~w~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~pp~~~~~~~---~~~~~~-~~~~~g~ 371 (407)
T TIGR01142 299 SEF-ALHLRAILGL--PVPGEWVDGYRLIKQLGPGASAVILADGEGGKLAFGGAPPADALEDA---LGVPDT-DVRLFGK 371 (407)
T ss_pred HHH-HHHHHHHHCC--CCCCCCCCCHHHHHHCCCCHHHHHHCHHCCCCCCCCCCCCHHHHHHH---HCCCCC-CEEEECC
T ss_conf 046-6544554236--66751001112222115410012200000011223567733455654---315543-0566216
Q ss_pred EEECCCCEEEE-EEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 99818807999-99628989999999999852589
Q gi|254780206|r 367 LTANGGRVLSA-TALGKTITESRELAYHMVENIDW 400 (424)
Q Consensus 367 l~t~GGRVL~v-v~~g~~l~eA~~~ay~~i~~I~~ 400 (424)
-.+.++|-+.+ .+.+++.+.+++++......+..
T Consensus 372 p~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 406 (407)
T TIGR01142 372 PEAKGGRRLGVALATAESVEAARERAEEVAHAVKV 406 (407)
T ss_pred CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 43333321012220220368889888887765227
No 62
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.54 E-value=1.1e-12 Score=111.71 Aligned_cols=275 Identities=20% Similarity=0.294 Sum_probs=166.0
Q ss_pred CEEEEE----CCC---------HHH--HHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 958998----865---------889--99999998589967899954983575117055128789899999998718979
Q gi|254780206|r 1 MRVLLI----GSG---------GRE--HALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 1 MkILvi----GsG---------grE--hAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
||||+- ++| ||. -+|...+.++. + ++|..-+-..+ .++-..-.-..|.....+-.- ++.|.
T Consensus 1 mkilifEyA~atg~ee~~i~~EG~aMlesll~~F~~~~-v-e~y~~~~f~~~-~ig~~f~s~~~~~~~~~ek~l-e~~Da 76 (307)
T COG1821 1 MKILIFEYAVATGIEEFNILAEGRAMLESLLRAFAKSG-V-EVYETLTFADP-SIGVRFKSTADDVLRDEEKAL-EKADA 76 (307)
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC-C-EEEEEECCCCC-CCCEEEECCHHHHHHHHHHHH-HCCCE
T ss_conf 91799985302575530135768999999999998559-4-59986033266-665113204367889999987-52884
Q ss_pred E-EECCCHH-HHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 9-9979557-8748998986058806701066655520102357888765310111122344011111210124202563
Q gi|254780206|r 66 V-VVGPELP-LVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK 143 (424)
Q Consensus 66 v-ivgpE~p-L~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVK 143 (424)
. +|.||+- |---+...+++. ...+|+|.+|++..+||..+-+.++.+ +++|+-... ...+--+|||
T Consensus 77 ~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~----------~~~~~k~ViK 144 (307)
T COG1821 77 TLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREW----------AEEPKKYVIK 144 (307)
T ss_pred EEEEECCCCCHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCC----------CCCCCEEEEC
T ss_conf 6998047677189999999987-675089777876751089899988411-248885535----------5678568862
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 04653430002323567788878875144531777887752057523442157763103520001113566544444344
Q gi|254780206|r 144 ADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGM 223 (424)
Q Consensus 144 p~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGM 223 (424)
|...+||.|+....+..+. .|++|||+|.-+||+ +.+|+++.||...+-+ -++.++. -++-
T Consensus 145 p~dgCgge~i~~~~~~pd~--------------~i~qEfIeG~~lSVS-L~~GEkv~pLsvNrQf-i~~~~~~---~~y~ 205 (307)
T COG1821 145 PADGCGGEGILFGRDFPDI--------------EIAQEFIEGEHLSVS-LSVGEKVLPLSVNRQF-IIFAGSE---LVYN 205 (307)
T ss_pred CCCCCCCCEEECCCCCCCH--------------HHHHHHCCCCCEEEE-EECCCCCCCCEECHHH-HHHCCCE---EEEC
T ss_conf 2556775102046777521--------------667874377614899-8558734430232232-1001423---4433
Q ss_pred CEEECCCCCCCCCCEEEECCHHHHHHHHHHHC-CCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEEC-CCCCCHH
Q ss_conf 30000123443222010000089999986204-623566445448985570489998865147751044332-6544115
Q gi|254780206|r 224 GACSPALGMSQELYSTVIQKIILPTIEGMQKE-QNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMR-LESDILE 301 (424)
Q Consensus 224 Ga~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~-~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~-L~~dl~~ 301 (424)
|.-+|.+ .+ ..+++++-.+++...- |+ +|...+++++. ++|||||+|+|+--| .+-+.| ....+.+
T Consensus 206 gg~~pi~---he----~k~~~~~~Ai~aVeci~Gl--~GYVGVDlVls-D~pYvIEINpR~TTp--~vg~sr~~~~sv~~ 273 (307)
T COG1821 206 GGRTPID---HE----LKREAFEEAIRAVECIPGL--NGYVGVDLVLS-DEPYVIEINPRPTTP--TVGLSRVTPESVAE 273 (307)
T ss_pred CCCCCCC---CH----HHHHHHHHHHHHHHHHCCC--CCEEEEEEEEC-CCCEEEEECCCCCCC--EEEEECCCCHHHHH
T ss_conf 6767888---17----8899999999999740255--54266789964-985799946877764--34320146177999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCE
Q ss_conf 6665420133332123444420
Q gi|254780206|r 302 ILNSCVHGNLHNTHINWKAEYA 323 (424)
Q Consensus 302 il~~~~~g~L~~~~~~~~~~~~ 323 (424)
+++.-..|++.+- ..++.+++
T Consensus 274 LLl~~~~g~~~~~-v~vkg~~~ 294 (307)
T COG1821 274 LLLEGPTGKVLRY-VKVKGEAS 294 (307)
T ss_pred HHHCCCCCCCCCE-EEECCCEE
T ss_conf 9852855665514-89826244
No 63
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.52 E-value=1.4e-13 Score=118.06 Aligned_cols=268 Identities=17% Similarity=0.220 Sum_probs=169.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCHHHHHCCE--EEECCCCCHHHHHHHHHHHCCCEEEECCCHH-----HHHHHHHHHHH
Q ss_conf 9999999985899678999549835751170--5512878989999999871897999979557-----87489989860
Q gi|254780206|r 12 EHALAWKIAQSPLLSELWSIPGNPGIAQHAQ--CVAIDIQNHSAIIHFCQEKHIDLVVVGPELP-----LVNGISDALNA 84 (424)
Q Consensus 12 EhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~--~~~i~~~d~~~i~~~a~~~~iDlvivgpE~p-----L~~gi~d~l~~ 84 (424)
|..|-.++.+-..-.+++..+ +--+ .+.+ ...|-......-.+.+ ....|.+++=.-.| -...++-.|+.
T Consensus 20 ~~~L~~~~~~~~~~~~~~~~~-~~~~-~~~~P~~~~I~~~~~~~~~~~~-~~~~d~~~~R~~TPWv~~~~~~~~~r~lE~ 96 (321)
T TIGR00768 20 EKMLKEAAEERGIDYKVVTPP-EIVL-TFNQPAAFSIFYKEPRKNKELA-LAELDVVIVRIGTPWVSSFRGLAVLRALES 96 (321)
T ss_pred HHHHHHHHHHHCCCEEEECCH-HHEE-CCCCCCCCEEECCCCCCCCHHH-HCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999717953676041-2200-3688851001114541001023-117888998389975110268899999985
Q ss_pred CCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC--------CCHHHHHHHHCCC---CEEEEEECCCCCCCCC
Q ss_conf 5880670106665552010235788876531011112234--------4011111210124---2025630465343000
Q gi|254780206|r 85 AGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFS--------DPMKAKQYVQNKS---MPIVVKADGLCAGKGV 153 (424)
Q Consensus 85 ~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~--------~~~ea~~~~~~~g---~PvVVKp~~~agGkGV 153 (424)
.|++++ -+..+..-++||.++-.+|.++|||+|+..+.. |.++|..+++++| ||+|+||.-.+.|++|
T Consensus 97 ~G~~~~-N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a~~~ie~~g~lEfP~V~Kp~~GS~G~~V 175 (321)
T TIGR00768 97 LGVPVI-NSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEALKLIEEIGQLEFPVVLKPVFGSWGRLV 175 (321)
T ss_pred CCCEEC-CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEE
T ss_conf 896310-7069986214658999999958689873357366322435898899999987317642458717856354268
Q ss_pred CCHHHHHHHHHHHHHH--HC-CCCHHHHHHHHHH--CCC-CCEEEECCCCCCCCCCCCCCCCC-CCCCCC--CCCCCCCC
Q ss_conf 2323567788878875--14-4531777887752--057-52344215776310352000111-356654--44443443
Q gi|254780206|r 154 VVAATVDEATSAIDRC--FQ-QINSTVIIEEYLE--GFE-VSFFALCDGKTAIPFTTARDHKR-IHDGDI--GPNTGGMG 224 (424)
Q Consensus 154 ~i~~~~~e~~~~~~~~--~~-~~~~~VliEefl~--G~E-~Sv~~i~dG~~~~~l~~~~dyKr-~~~~d~--GpnTGGMG 224 (424)
..+.++.++...++.. ++ ....-.+|+|||+ =++ -++=||+=|.+++-- . .| ..+++- .-+-||-+
T Consensus 176 ~l~~D~~~~~~~~e~~~~~~~~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~v~aA-~----~R~~~~~~w~~N~a~GG~a 250 (321)
T TIGR00768 176 SLARDKQAAETLLEHFEQLNGPQYKVFLVQEYIKPVKPGGRDIRVFVVGDEVVAA-I----YRIITSGHWRTNLARGGKA 250 (321)
T ss_pred EEEECHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEEEE-E----EECCCCCCHHHHHHCCCCC
T ss_conf 9850678999999999721883323578872011325789318999988920133-3----5417883024355438821
Q ss_pred EEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECC-----EEEEEEEEEEECCCCCEEEEECCCCCC
Q ss_conf 000012344322201000008999998620462356644544898557-----048999886514775104433265441
Q gi|254780206|r 225 ACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQ-----GPYLIEYNVRFGDPECQAMMMRLESDI 299 (424)
Q Consensus 225 a~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~-----gp~viE~N~R~GDPE~q~ilp~L~~dl 299 (424)
. |. .++ +++ +++ ++++-+..|..|.| +||+-.++ |..|+|+|.-+| -..+.-....|+
T Consensus 251 ~--~~-~l~----~e~-~~L---A~ka~~a~g~~v~g---iDlle~~~r~dw~GL~V~EVN~~~~---f~~~~~~tgvni 313 (321)
T TIGR00768 251 E--PC-SLT----EEI-EEL---AIKAAKALGLDVAG---IDLLESKDRDDWGGLLVLEVNANPE---FKNSVKTTGVNI 313 (321)
T ss_pred C--CC-CCC----HHH-HHH---HHHHHHHHCCCEEE---EEEEECCCCCCCCCCEEEEECCCCC---CCCCEEECCCCH
T ss_conf 2--45-258----899-999---99999997683489---9776626854257837999849977---001111116776
Q ss_pred HHHHHH
Q ss_conf 156665
Q gi|254780206|r 300 LEILNS 305 (424)
Q Consensus 300 ~~il~~ 305 (424)
...|..
T Consensus 314 A~~l~~ 319 (321)
T TIGR00768 314 AGKLLD 319 (321)
T ss_pred HHHHHH
T ss_conf 899997
No 64
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=99.51 E-value=9.6e-14 Score=119.31 Aligned_cols=201 Identities=18% Similarity=0.191 Sum_probs=136.9
Q ss_pred HCCCEEEECCCH-HHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 189799997955-7874899898605880670106665552010235788876531011112234401111121012420
Q gi|254780206|r 61 KHIDLVVVGPEL-PLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP 139 (424)
Q Consensus 61 ~~iDlvivgpE~-pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P 139 (424)
...|++|.=+=. .=+.-.+-.++..|++++ -+..+...++||.|+.-.|.++|||||++.++.|.+.|+++++++|||
T Consensus 47 ~~~dv~i~R~VS~~R~L~~a~~~E~~G~~~i-N~~~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYP 125 (289)
T TIGR02144 47 EDLDVAIIRNVSQSRALYSAFLLEAVGVPTI-NSSHAIIACGDKIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYP 125 (289)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHCCCEEE-CCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCC
T ss_conf 3755689830345679999999984897152-775898750461889999996678898358982868999999970898
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHH--HHHCCCCHH-HHHHHHHH--CCCCCEEEECCCCCCCCCCCCCCCCCCCC-
Q ss_conf 2563046534300023235677888788--751445317-77887752--05752344215776310352000111356-
Q gi|254780206|r 140 IVVKADGLCAGKGVVVAATVDEATSAID--RCFQQINST-VIIEEYLE--GFEVSFFALCDGKTAIPFTTARDHKRIHD- 213 (424)
Q Consensus 140 vVVKp~~~agGkGV~i~~~~~e~~~~~~--~~~~~~~~~-VliEefl~--G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~- 213 (424)
+|+||...|=||=|..++|.+++...++ +..++.... -+|+||++ |.-+-++++ |.+++. .+ | |..+
T Consensus 126 vV~KP~~GSWGRlV~~~~d~~~~~~llEh~e~~~~~~~~~~y~QEfi~KPgRDIR~fVi--Gd~~~~-AI---Y-R~~~P 198 (289)
T TIGR02144 126 VVLKPVIGSWGRLVSKIRDKDELESLLEHKEVLGGSQLKLYYVQEFINKPGRDIRVFVI--GDEAIA-AI---Y-RYSEP 198 (289)
T ss_pred EEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEE--CCCCEE-EE---E-ECCCC
T ss_conf 89708888437887640378898899999998679763337999887188960899999--797316-78---8-33885
Q ss_pred CCCCCCCCCCCEE-ECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECC------EEEEEEEEEE
Q ss_conf 6544444344300-0012344322201000008999998620462356644544898557------0489998865
Q gi|254780206|r 214 GDIGPNTGGMGAC-SPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQ------GPYLIEYNVR 282 (424)
Q Consensus 214 ~d~GpnTGGMGa~-~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~------gp~viE~N~R 282 (424)
++==-||- -|+= +|.+ +-+++-+-+++|...-|..| +-+|+.=.++ |--|+|+|--
T Consensus 199 ~~W~TNtA-rGG~A~P~~---------~~~e~~~La~kA~~avgg~~---~~iDi~Es~~rqndW~GlLV~EVN~~ 261 (289)
T TIGR02144 199 NHWRTNTA-RGGKAEPCK---------IDEEVEELAVKAAEAVGGEV---VGIDIVESKRRQNDWGGLLVNEVNGV 261 (289)
T ss_pred CCHHHHHH-CCCCCCCCC---------CCHHHHHHHHHHHHHHCCEE---EEEEEEECCCCCCCCCCEEEEEECCC
T ss_conf 30255630-588447887---------68768999999999978827---89988643344544378689735689
No 65
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.49 E-value=3.3e-12 Score=108.22 Aligned_cols=336 Identities=20% Similarity=0.256 Sum_probs=189.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEE----EC-CCHHHHH-CCEEE------ECCCCCHHHHHHHHHHHC--CCE-E
Q ss_conf 58998865889999999985899678999----54-9835751-17055------128789899999998718--979-9
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWS----IP-GNPGIAQ-HAQCV------AIDIQNHSAIIHFCQEKH--IDL-V 66 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~----~p-gN~g~~~-~~~~~------~i~~~d~~~i~~~a~~~~--iDl-v 66 (424)
||||||---|--+ ..+++ .-.+||. .| +-++-+. .-.+. .+...|.+.+++.+.+.. +|. +
T Consensus 13 kiLviGvntR~vv--eSA~k--lGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~i 88 (389)
T COG2232 13 KILVIGVNTRPVV--ESASK--LGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPI 88 (389)
T ss_pred EEEEEEECCHHHH--HHHHH--CCEEEEEEEEECCCCCCCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 3899962341767--78774--4718998675343236642102788448545276558898999999986445324125
Q ss_pred EECCCHHHHHHHHHHHH---HCCCCEEECCHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf 99795578748998986---05880670106665552-010235788876531011112234401111121012420256
Q gi|254780206|r 67 VVGPELPLVNGISDALN---AAGFKVFGPSQRAAKLE-SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVV 142 (424)
Q Consensus 67 ivgpE~pL~~gi~d~l~---~~gi~v~Gp~~~aa~le-~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVV 142 (424)
+++. ....|. +.+-++.|-+.....-+ ++|...-..++..|.|.|.-+.. +-+..--.++++
T Consensus 89 i~~s-------g~e~l~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~-------e~~~~gekt~Il 154 (389)
T COG2232 89 IPFS-------GFEALRTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKI-------EPLEEGEKTLIL 154 (389)
T ss_pred EECC-------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHCCEEEEE
T ss_conf 4035-------53212456754564456782788999888886520101028999704321-------144402101477
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30465343000232356778887887514453177788775205752344215776310352000111356654444434
Q gi|254780206|r 143 KADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGG 222 (424)
Q Consensus 143 Kp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGG 222 (424)
||...+||- +.++.-.++ ..-..+|++||++|.-+|+..+.+|.+.+++.... .+-++-.|-- ++
T Consensus 155 KPv~GaGG~-~el~~~~Ee----------~~~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~---QiI~~~~~~~-~~ 219 (389)
T COG2232 155 KPVSGAGGL-VELVKFDEE----------DPPPGFIFQEFIEGRPVSVSFISNGSDALTLAVND---QIIDGLRGEY-SQ 219 (389)
T ss_pred EECCCCCCE-EEECCCCCC----------CCCCCEEHHHHCCCCEEEEEEEECCCCEEEEEEEE---EEECCCCCCC-CC
T ss_conf 302378860-131004334----------58766003343178413799973586238999700---2214532334-44
Q ss_pred ---CCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEE-CCCCCEEEEECCCCC
Q ss_conf ---4300001234432220100000899999862046235664454489855704899988651-477510443326544
Q gi|254780206|r 223 ---MGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRF-GDPECQAMMMRLESD 298 (424)
Q Consensus 223 ---MGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~-GDPE~q~ilp~L~~d 298 (424)
-|-.+|.+.... +..+++.+-.+..|-..| --.+||+++++||||||+|.|+ |-=||. =....-+
T Consensus 220 f~Y~GNlTP~~~~~~----ee~e~la~elV~~lgL~G-----snGVDfvl~d~gpyViEVNPR~qGt~e~i--E~s~giN 288 (389)
T COG2232 220 FVYKGNLTPFPYEEV----EEAERLAEELVEELGLVG-----SNGVDFVLNDKGPYVIEVNPRIQGTLECI--ERSSGIN 288 (389)
T ss_pred CEECCCCCCCCCHHH----HHHHHHHHHHHHHHCCCC-----CCCCCEEEECCCCEEEEECCCCCCHHHHH--HHHCCCC
T ss_conf 101267677765026----899999999999842356-----66610686068857999568545237888--9861777
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCC-CEE-EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE-ECCEEEECCCCEE
Q ss_conf 11566654201333321234444-206-75422544668775797624876668986899833587-7887998188079
Q gi|254780206|r 299 ILEILNSCVHGNLHNTHINWKAE-YAL-TVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAI-VNNNLTANGGRVL 375 (424)
Q Consensus 299 l~~il~~~~~g~L~~~~~~~~~~-~~v-~Vvlas~GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~-~~g~l~t~GGRVL 375 (424)
++++-..+.+|+|.+ +|++. +++ .|+-|+. ..+.+ + ... .++| .. ..|.++-.|--++
T Consensus 289 l~~lHi~af~G~LpE---r~kpr~~a~krILyap~---------~v~v~--~-l~~-~~~~---DiP~~GtviekgePl~ 349 (389)
T COG2232 289 LFRLHIQAFDGELPE---RPKPRGYACKRILYAPR---------TVRVP--I-LKL-SWTH---DIPRPGTVIEKGEPLC 349 (389)
T ss_pred HHHHHHHHHCCCCCC---CCCCCEEEEEEEEECCC---------EEECC--C-CCC-CCCC---CCCCCCCCCCCCCCEE
T ss_conf 899999984575767---77765347767886452---------36613--1-025-5211---3798982257998304
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999628989999999999852589
Q gi|254780206|r 376 SATALGKTITESRELAYHMVENIDW 400 (424)
Q Consensus 376 ~vv~~g~~l~eA~~~ay~~i~~I~~ 400 (424)
+|.+.+++.+.|+..+.+.+++++-
T Consensus 350 sviA~~nt~~~a~~~~er~~ervk~ 374 (389)
T COG2232 350 SVIASSNTRSGAESMAERLAERVKN 374 (389)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 6552268778999999999999988
No 66
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.44 E-value=3.9e-13 Score=114.91 Aligned_cols=98 Identities=29% Similarity=0.456 Sum_probs=84.2
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC-CCEEEEEECCCCCCCCCCCH---HHHHHHHHHHHHHHCCC
Q ss_conf 552010235788876531011112234401111121012-42025630465343000232---35677888788751445
Q gi|254780206|r 98 KLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNK-SMPIVVKADGLCAGKGVVVA---ATVDEATSAIDRCFQQI 173 (424)
Q Consensus 98 ~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~-g~PvVVKp~~~agGkGV~i~---~~~~e~~~~~~~~~~~~ 173 (424)
-+..+|..+|+++.++|+|+|++..|++.++|.++...+ +.|+||||-.-.-|.|+.+- .+.++..+|++.+|+.
T Consensus 485 limenk~vtK~vl~~~g~~vp~g~~~~~~~~a~~~~~~~~~k~ivvKpkstn~g~gi~if~~~~~~~~~~~A~~~af~~- 563 (753)
T PRK02471 485 LIMENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFEDKAIVVKPKSTNFGLGISIFKEVASLEDYQKALEIAFKE- 563 (753)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHC-
T ss_conf 9884119999999985998999874078999999999867996686807777877659834899989999999999856-
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 317778877520575234421577
Q gi|254780206|r 174 NSTVIIEEYLEGFEVSFFALCDGK 197 (424)
Q Consensus 174 ~~~VliEefl~G~E~Sv~~i~dG~ 197 (424)
++.||||+|+.|.|+.+.++ ||+
T Consensus 564 d~~VlVE~~i~G~dyR~lVI-~~k 586 (753)
T PRK02471 564 DSSVLVEEFIVGTEYRFFVL-DGK 586 (753)
T ss_pred CCEEEEEEEECCCCEEEEEE-CCE
T ss_conf 98189997316870699999-999
No 67
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.09 E-value=3e-09 Score=86.85 Aligned_cols=284 Identities=20% Similarity=0.230 Sum_probs=167.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECC--CHHHHHCCEEE-----ECCCCCHHHHHHHHHHHCCC--EEE-EC-CC
Q ss_conf 8998865889999999985899678999549--83575117055-----12878989999999871897--999-97-95
Q gi|254780206|r 3 VLLIGSGGREHALAWKIAQSPLLSELWSIPG--NPGIAQHAQCV-----AIDIQNHSAIIHFCQEKHID--LVV-VG-PE 71 (424)
Q Consensus 3 ILviGsGgrEhAl~~~l~~s~~~~~v~~~pg--N~g~~~~~~~~-----~i~~~d~~~i~~~a~~~~iD--lvi-vg-pE 71 (424)
|++||+---..|||..+-... +...++..+ -|+.+.+.+.. +-|..-+.-+.+||.+|.-. |-| +| +|
T Consensus 6 viilGgahgtlalARSfg~~~-vpv~~ls~d~plPt~Sr~vr~t~~w~gphd~gaiafLrd~Aekhglkg~LLva~GDge 84 (415)
T COG3919 6 VIILGGAHGTLALARSFGEEF-VPVLALSADGPLPTYSRIVRVTTHWNGPHDEGAIAFLRDFAEKHGLKGYLLVACGDGE 84 (415)
T ss_pred EEEECCCCHHHHHHHHHCCCC-CEEEEEECCCCCCCHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCE
T ss_conf 699746501689887614012-5179984698886444431010004899852099999998761476735999638830
Q ss_pred HHHHHHHHHHHHHCCCCEEECCHHHH-HHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 57874899898605880670106665-55201023578887653101111223440111112101242025630465343
Q gi|254780206|r 72 LPLVNGISDALNAAGFKVFGPSQRAA-KLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAG 150 (424)
Q Consensus 72 ~pL~~gi~d~l~~~gi~v~Gp~~~aa-~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agG 150 (424)
.-|+.--.+.|.+. +.|.-|...-- +|| .|-..-+.+.++|+|.|+-..++|..++. ..++-||+++||... +|
T Consensus 85 v~lvSq~reeLSa~-f~v~lp~w~~l~wlc-eKPllY~ra~elgl~~P~Ty~v~S~~d~~--~~el~FPvILKP~mg-g~ 159 (415)
T COG3919 85 VLLVSQYREELSAF-FEVPLPDWALLRWLC-EKPLLYNRAEELGLPYPKTYLVNSEIDTL--VDELTFPVILKPGMG-GS 159 (415)
T ss_pred EEEHHHHHHHHHHH-HCCCCCCHHHHHHHH-HCCHHHHHHHHHCCCCCCEEEECCHHHHH--HHHEEEEEEECCCCC-CC
T ss_conf 66257569999887-657787389999986-08288888998199976067723144321--231440388617888-75
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHCC---CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------00023235677888788751445-3177788775205---7523442157763103520001113566544444
Q gi|254780206|r 151 ------KGVVVAATVDEATSAIDRCFQQI-NSTVIIEEYLEGF---EVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNT 220 (424)
Q Consensus 151 ------kGV~i~~~~~e~~~~~~~~~~~~-~~~VliEefl~G~---E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnT 220 (424)
+-++.+.+.+|.+.++-++.++. .+.|+|+|||.|- .+|.-++.|..+-+.+-+++- -|-+.-|.|
T Consensus 160 ~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr-~rqyPvdfg--- 235 (415)
T COG3919 160 VHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARR-LRQYPVDFG--- 235 (415)
T ss_pred CEEEHHHHEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCHHHHHCCH-HHCCCCCCC---
T ss_conf 1001010014316779999999998874399725887705799822320988985798346442342-221886546---
Q ss_pred CCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC-CE-EEEEEEEEEECCCCCEEEEECCCCC
Q ss_conf 344300001234432220100000899999862046235664454489855-70-4899988651477510443326544
Q gi|254780206|r 221 GGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE-QG-PYLIEYNVRFGDPECQAMMMRLESD 298 (424)
Q Consensus 221 GGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~-~g-p~viE~N~R~GDPE~q~ilp~L~~d 298 (424)
|+-.-. +..+ .++.++..-+-|. .+.+.|+..++|..+. +| -|++|+|.|.+-- --+...-.-|
T Consensus 236 -----ytst~v---evvD--n~Q~i~aar~~L~--si~htGlvevefK~D~RDGs~KlldvNpRpw~w--fgl~taaG~n 301 (415)
T COG3919 236 -----YTSTVV---EVVD--NQQVIQAARDFLE--SIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRW--FGLVTAAGYN 301 (415)
T ss_pred -----CCCEEE---EECC--CHHHHHHHHHHHH--HHCCCCEEEEEEEECCCCCCEEEEEECCCCCCE--EEEEECCCCC
T ss_conf -----452799---9528--2899999999998--631255478998756877724677625887304--5477404545
Q ss_pred CHHHHHHHHHCC
Q ss_conf 115666542013
Q gi|254780206|r 299 ILEILNSCVHGN 310 (424)
Q Consensus 299 l~~il~~~~~g~ 310 (424)
|.-++.+...++
T Consensus 302 Lg~~Lwa~~~~~ 313 (415)
T COG3919 302 LGRYLWADRINN 313 (415)
T ss_pred CCCEEEEEECCC
T ss_conf 301478651589
No 68
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=98.98 E-value=3.2e-10 Score=93.88 Aligned_cols=101 Identities=24% Similarity=0.330 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-CEEEEEECCCCCCC----CCCCHHHHHHHHHHHHHHHCCC-----
Q ss_conf 2357888765310111122344011111210124-20256304653430----0023235677888788751445-----
Q gi|254780206|r 104 SFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKS-MPIVVKADGLCAGK----GVVVAATVDEATSAIDRCFQQI----- 173 (424)
Q Consensus 104 ~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g-~PvVVKp~~~agGk----GV~i~~~~~e~~~~~~~~~~~~----- 173 (424)
.-+|++|++||||+|++..+++.+|+...+++.| .++|||+--++||| ||.+++|.+|+.++.++.|+..
T Consensus 6 YqAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg~~l~t~Q 85 (389)
T TIGR01016 6 YQAKEIFAKYGIPVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLGKELKTFQ 85 (389)
T ss_pred HHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCEEEEEE
T ss_conf 55899998478967886004167899999997079978999877326711215768970879999999987089157864
Q ss_pred ----C---HHHHHHHHHH-CCCCCEEEECCCCC--CCCCCC
Q ss_conf ----3---1777887752-05752344215776--310352
Q gi|254780206|r 174 ----N---STVIIEEYLE-GFEVSFFALCDGKT--AIPFTT 204 (424)
Q Consensus 174 ----~---~~VliEefl~-G~E~Sv~~i~dG~~--~~~l~~ 204 (424)
+ ++|+||+-++ -.||-+.++.|-++ .++|-.
T Consensus 86 t~~~g~~VnkiliE~~~~I~kEyY~s~v~DR~~~~pv~maS 126 (389)
T TIGR01016 86 TDPLGQPVNKILIEEKIDIDKEYYLSIVIDRSAKKPVIMAS 126 (389)
T ss_pred CCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEE
T ss_conf 07888634478732677412001477999804787179970
No 69
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.95 E-value=4e-08 Score=78.69 Aligned_cols=263 Identities=19% Similarity=0.254 Sum_probs=154.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHHCC-CEEEECCCHHHH
Q ss_conf 95899886588999999998589967899954983575----1170551287898999999987189-799997955787
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEKHI-DLVVVGPELPLV 75 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~~i-DlvivgpE~pL~ 75 (424)
|.|.++||-.-=| +..-.++...-+-++|-.|...+- ..++.+.+ .++.++++..++..= +.++| |--.++
T Consensus 19 i~I~tl~SHSALq-Il~GAK~EGF~T~~vc~~gr~~~Y~~f~~~De~iv~--d~f~di~~~q~~L~~~NaI~I-PhgSfv 94 (356)
T PRK13278 19 ITIATIGSHSSLQ-ILKGAKKEGFRTIAICEKKREKFYKRFPFADEFIIV--DSFSDILEIQEELREMNAIVI-PHGSFV 94 (356)
T ss_pred CEEEEEECHHHHH-HHCCHHHCCCCEEEEECCCCCCHHHHCCCCCEEEEE--CCHHHHHHHHHHHHHCCEEEE-CCCCEE
T ss_conf 3899984425988-853287739957999669974534547764279994--768999999999987896996-488858
Q ss_pred HHH-HHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 489-9898605880670106665552010235788876531011112234401111121012420256304653430002
Q gi|254780206|r 76 NGI-SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVV 154 (424)
Q Consensus 76 ~gi-~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~ 154 (424)
+-+ .|.+++..+|+|| ++..-+.|+++..-+++|+++|||.|+ .+.+.++ +.-|++||.-|-.||||-+
T Consensus 95 ~Y~G~~~iE~~~VP~FG-NR~lLrwEs~r~~~~~lLe~Agi~~Pk--~~~~Pee-------IDr~VIVK~~gAkggrGyF 164 (356)
T PRK13278 95 AYLGLENVEEFKVPMFG-NREILRWESDRDKERKLLEGAGIRIPR--KYEDPED-------IDGPVIVKLPGAKGGRGYF 164 (356)
T ss_pred EEECHHHHHHCCCCCCC-CHHHHHHHHCHHHHHHHHHHCCCCCCE--ECCCHHH-------CCCCEEEEECCCCCCCEEE
T ss_conf 98368888508888205-877866510307899999867999871--1589555-------7852699746777774589
Q ss_pred CHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHCCCCCEEEECC--CCCCCCCCCCCCCCCCCCC------------CC
Q ss_conf 323567788878875144----53177788775205752344215--7763103520001113566------------54
Q gi|254780206|r 155 VAATVDEATSAIDRCFQQ----INSTVIIEEYLEGFEVSFFALCD--GKTAIPFTTARDHKRIHDG------------DI 216 (424)
Q Consensus 155 i~~~~~e~~~~~~~~~~~----~~~~VliEefl~G~E~Sv~~i~d--G~~~~~l~~~~dyKr~~~~------------d~ 216 (424)
++.|.+|..+-++...+. .-+...||||+-|.-+-++-|-. -+++-.|..-+-|..--|+ +.
T Consensus 165 ~a~s~~ef~~k~~~l~~~g~i~d~~~~~IeEyv~G~~~~~~yFySpl~~~lEllg~D~R~esniDg~~rlPa~~qle~~~ 244 (356)
T PRK13278 165 IASSPEEFWEKIDRLKEKGLIEDVEKYIIQEYVVGVPYYIHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLEAGI 244 (356)
T ss_pred EECCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEHHHCCCCCCCCEEEEECCEEEEECCHHHCCCCHHHHHHCCC
T ss_conf 95798999999999886275455544279998347412312203520066136631003440522320488788853689
Q ss_pred CCC---CCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHC-CCEEEEEEEEEEEEECCE-EEEEEEEEEE
Q ss_conf 444---434430000123443222010000089999986204-623566445448985570-4899988651
Q gi|254780206|r 217 GPN---TGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKE-QNPFQGVLFAGLMITEQG-PYLIEYNVRF 283 (424)
Q Consensus 217 Gpn---TGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~-~~~y~G~l~~~~m~t~~g-p~viE~N~R~ 283 (424)
-|. ||- .|. .+-+++..++.+ .=+..+++.+++ .-...|++..+.++|++. .+|-|+.+|.
T Consensus 245 ~p~~vvvGn----~p~-vlRESLL~~vf~-~ge~fV~a~k~l~~PG~iGPFcLq~vvt~~le~vvFevS~RI 310 (356)
T PRK13278 245 DPTYVVTGN----IPL-VLRESLLPQVFE-YGERFVEASKELVGPGMIGPFCLESVITDDLEIVVFEISARI 310 (356)
T ss_pred CCCEEEECC----CCC-EEEHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 984699888----532-441765799999-999999999974699863454366898698609999985431
No 70
>pfam08442 ATP-grasp_2 ATP-grasp domain.
Probab=98.88 E-value=1e-09 Score=90.20 Aligned_cols=95 Identities=26% Similarity=0.316 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC-EEEEEECCCCCCC----CCCCHHHHHHHHHHHHHHHCCC------
Q ss_conf 3578887653101111223440111112101242-0256304653430----0023235677888788751445------
Q gi|254780206|r 105 FAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM-PIVVKADGLCAGK----GVVVAATVDEATSAIDRCFQQI------ 173 (424)
Q Consensus 105 ~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~-PvVVKp~~~agGk----GV~i~~~~~e~~~~~~~~~~~~------ 173 (424)
-+|++|+++|||+|++..+++.++|.+++++++. |+|||+.-++||| ||.++.|.+|+.++.++.++..
T Consensus 6 qaK~ll~~~gIpvp~g~~~~~~~ea~~~~~~l~~~~~VvKaQv~aGGRGKaGGVk~~~~~~ea~~~a~~~lg~~l~T~QT 85 (202)
T pfam08442 6 QAKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPEEAKEAAKEMLGKNLVTKQT 85 (202)
T ss_pred HHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99999998599899915969999999999980998699987423588876773899789999999999872977875502
Q ss_pred ------CHHHHHHHHHHC-CCCCEEEECCCCCC
Q ss_conf ------317778877520-57523442157763
Q gi|254780206|r 174 ------NSTVIIEEYLEG-FEVSFFALCDGKTA 199 (424)
Q Consensus 174 ------~~~VliEefl~G-~E~Sv~~i~dG~~~ 199 (424)
-++|+|||.++- .|+-+..+.|..+-
T Consensus 86 g~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~ 118 (202)
T pfam08442 86 GPEGKPVNKVLVEEAVDIAREYYLSIVLDRASR 118 (202)
T ss_pred CCCCCEEEEEEEEECCCCCCEEEEEEEECCCCC
T ss_conf 788962338999851540100799999757778
No 71
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.79 E-value=1.4e-09 Score=89.22 Aligned_cols=101 Identities=26% Similarity=0.335 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-CEEEEEECCCCCCC----CCCCHHHHHHHHHHHHHHHC----CC-
Q ss_conf 2357888765310111122344011111210124-20256304653430----00232356778887887514----45-
Q gi|254780206|r 104 SFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKS-MPIVVKADGLCAGK----GVVVAATVDEATSAIDRCFQ----QI- 173 (424)
Q Consensus 104 ~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g-~PvVVKp~~~agGk----GV~i~~~~~e~~~~~~~~~~----~~- 173 (424)
.-+|++|.++|||+|++..+++.+++.+.++++| .|+|||+.-++||| ||.++.|.+|+.++.++.++ ..
T Consensus 6 YqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~ 85 (387)
T COG0045 6 YQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDI 85 (387)
T ss_pred HHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf 88998999729989995454089999999998189967999225305766667668838989999999998486654576
Q ss_pred ----CHHHHHHHHHH-CC-CCCEEEECCCC--CCCCCCC
Q ss_conf ----31777887752-05-75234421577--6310352
Q gi|254780206|r 174 ----NSTVIIEEYLE-GF-EVSFFALCDGK--TAIPFTT 204 (424)
Q Consensus 174 ----~~~VliEefl~-G~-E~Sv~~i~dG~--~~~~l~~ 204 (424)
-.+++|||+.+ =. |+-+..+.|-. ..+++..
T Consensus 86 ~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S 124 (387)
T COG0045 86 KGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMAS 124 (387)
T ss_pred CCCEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEE
T ss_conf 884542899974677764337999999737783799996
No 72
>PRK05246 glutathione synthetase; Provisional
Probab=98.79 E-value=5.2e-08 Score=77.90 Aligned_cols=280 Identities=18% Similarity=0.214 Sum_probs=154.9
Q ss_pred CEEEEECCC--------HHHHHHHHHHHHCCCCCEEE-EECCCHHHH---HCCEEEEC--CCC--CHHHHH--HHHHHHC
Q ss_conf 958998865--------88999999998589967899-954983575---11705512--878--989999--9998718
Q gi|254780206|r 1 MRVLLIGSG--------GREHALAWKIAQSPLLSELW-SIPGNPGIA---QHAQCVAI--DIQ--NHSAII--HFCQEKH 62 (424)
Q Consensus 1 MkILviGsG--------grEhAl~~~l~~s~~~~~v~-~~pgN~g~~---~~~~~~~i--~~~--d~~~i~--~~a~~~~ 62 (424)
|||+++..- ---.||+...++-.. +|| +-|.+=.+. ..+....+ ... ++-.+. +...-.+
T Consensus 2 mki~f~mDpie~l~~~kDTT~~Lm~eAq~rGh--ev~~~~p~dL~~~~~~v~a~~~~v~~~~~~~~~~~~~~~~~~~L~~ 79 (316)
T PRK05246 2 MKVAFIMDPIESINIKKDSTFAMMLEAQRRGH--ELFYYEPDDLSLRGGEVRARARPLTVRDDKGDWYELGEEQRLPLAD 79 (316)
T ss_pred CEEEEEECCHHHCCCCCCHHHHHHHHHHHCCC--EEEEEECCCEEEECCEEEEEEEEEEECCCCCCCEEECCCEECCHHH
T ss_conf 47999968978779988729999999998799--8999972756998999999999999815888747941515513001
Q ss_pred CCEEEECCC-----HHH-HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf 979999795-----578-74899898605880670106665552010235788876531011112234401111121012
Q gi|254780206|r 63 IDLVVVGPE-----LPL-VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNK 136 (424)
Q Consensus 63 iDlvivgpE-----~pL-~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~ 136 (424)
.|.|++=-+ .+| ..-+-|.++..|..|+ -+..+.+-...|.++-+|- +. +|+.-+.+|.+++++|+++.
T Consensus 80 fD~V~mRkDPPfD~~Yi~~T~lLe~~~~~gv~Vi-N~P~~IR~~nEKL~~l~F~-~~---iP~TlVt~~~~~i~~F~~~~ 154 (316)
T PRK05246 80 FDVILMRKDPPFDMEYIYATYLLERAERAGTLVV-NKPQSLRDANEKLFTLWFP-EL---MPPTLVTRDKAEIRAFRAEH 154 (316)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCHHHHHHHHHHHHHHHHH-HH---CCCEEEECCHHHHHHHHHHH
T ss_conf 9899992699997688899999985153870897-6989986426478887406-44---89935737899999999973
Q ss_pred CCEEEEEECCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHCC---CCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 4202563046534300023235-6778887887514453177788775205---75234421577631035200011135
Q gi|254780206|r 137 SMPIVVKADGLCAGKGVVVAAT-VDEATSAIDRCFQQINSTVIIEEYLEGF---EVSFFALCDGKTAIPFTTARDHKRIH 212 (424)
Q Consensus 137 g~PvVVKp~~~agGkGV~i~~~-~~e~~~~~~~~~~~~~~~VliEefl~G~---E~Sv~~i~dG~~~~~l~~~~dyKr~~ 212 (424)
+ .+||||-+..||+||+.+.. ...+...++.........|+++|||.-. ...+ .+.||+-+-. ...|- . -
T Consensus 155 ~-~iVlKPL~g~gG~gV~~i~~~d~n~~~i~e~~t~~~~~~v~vQ~yl~ei~~GDkRi-ilv~G~~ig~-a~~R~-p--~ 228 (316)
T PRK05246 155 G-DIILKPLDGMGGAGIFRVKADDPNLGVILETLTEQGRRPVMAQRYLPEIKEGDKRI-LLVDGEPVGY-ALARI-P--A 228 (316)
T ss_pred C-CEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEEHHHCCCCCEEE-EEECCEEEHH-EEEEC-C--C
T ss_conf 8-78999756889840899777862389999999745873689886512436898799-9999999114-68832-6--7
Q ss_pred CCC--CCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEE-E-CCCCC
Q ss_conf 665--4444434430000123443222010000089999986204623566445448985570489998865-1-47751
Q gi|254780206|r 213 DGD--IGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVR-F-GDPEC 288 (424)
Q Consensus 213 ~~d--~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R-~-GDPE~ 288 (424)
++| ..-..||-+..++ ++++ ..+|++.+..-|++.|+-|.| +|++ |+|++|+|+- . |=.|.
T Consensus 229 ~gdfR~Nl~~Gg~~~~~~---lt~~-----~~~i~~~i~p~L~~~gl~f~G---iDvi----g~~ltEINVTSPtgl~ei 293 (316)
T PRK05246 229 GGETRGNLAAGGRGEATP---LTER-----DREICAAIGPELKERGLIFVG---IDVI----GDYLTEINVTSPTGIREI 293 (316)
T ss_pred CCCCEEEEECCCEEEEEC---CCHH-----HHHHHHHHHHHHHHCCCEEEE---EEEE----CCEEEEEECCCCHHHHHH
T ss_conf 886113230598026716---9989-----999999999999987988999---9753----782689936895459999
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 04433265441156665420133
Q gi|254780206|r 289 QAMMMRLESDILEILNSCVHGNL 311 (424)
Q Consensus 289 q~ilp~L~~dl~~il~~~~~g~L 311 (424)
--+-..|+...+...++.++
T Consensus 294 ---~~~~~~~~~~~~~d~lE~~~ 313 (316)
T PRK05246 294 ---ERLTGVDIAGMLWDAIEAKL 313 (316)
T ss_pred ---HHHHCCCHHHHHHHHHHHHH
T ss_conf ---98759998999999999876
No 73
>pfam02955 GSH-S_ATP Prokaryotic glutathione synthetase, ATP-grasp domain.
Probab=98.76 E-value=2.6e-08 Score=80.09 Aligned_cols=146 Identities=19% Similarity=0.237 Sum_probs=92.1
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHC---CCCCEEE
Q ss_conf 111122344011111210124202563046534300023235677-888788751445317778877520---5752344
Q gi|254780206|r 117 TATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDE-ATSAIDRCFQQINSTVIIEEYLEG---FEVSFFA 192 (424)
Q Consensus 117 t~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e-~~~~~~~~~~~~~~~VliEefl~G---~E~Sv~~ 192 (424)
+|+-...+|.+++++|++..+ ++|+||-..++|+||+.+.+.+. +...++.........++++|||+. -++.+.+
T Consensus 12 ~P~T~vt~~~~~i~~f~~~~g-~vVvKPl~Gs~G~GV~~i~~~~~~~~~i~e~~~~~~~~~ii~QeyI~~~~~gD~Rv~v 90 (176)
T pfam02955 12 IPPTLVTRDKEEIRAFLEEHG-DIILKPLDGMGGAGVFRIKKDDPNLNVILETLTQYGRRPVMAQRYLPEIKEGDKRILL 90 (176)
T ss_pred CCCEEEECCHHHHHHHHHHCC-CEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEE
T ss_conf 869479889999999999779-8999957888876759954783558999999984688839864313767899769999
Q ss_pred ECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC
Q ss_conf 2157763103520001113-566544444344300001234432220100000899999862046235664454489855
Q gi|254780206|r 193 LCDGKTAIPFTTARDHKRI-HDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE 271 (424)
Q Consensus 193 i~dG~~~~~l~~~~dyKr~-~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~ 271 (424)
+ ||+-+ ... .|. .++|---|.---|...+. ++.++ .++|...+...|++.|+.|.| +|++
T Consensus 91 i-~g~~v---~a~---~R~~~~g~~r~Nl~~Gg~~~~~-----~lt~~-~~~ia~~~a~~l~~~Gl~faG---VDii--- 151 (176)
T pfam02955 91 V-NGEPI---GAL---ARIPAEGEFRGNLAAGGRGEAT-----ELTER-DREICETIGPKLKERGLFFVG---LDVI--- 151 (176)
T ss_pred E-CCEEE---EEE---EEECCCCCCEEEECCCCEEECC-----CCCHH-HHHHHHHHHHHHHHCCCEEEE---EEEE---
T ss_conf 9-99998---999---9854798521440269800057-----89999-999999999999986997999---9984---
Q ss_pred CEEEEEEEEE-EE
Q ss_conf 7048999886-51
Q gi|254780206|r 272 QGPYLIEYNV-RF 283 (424)
Q Consensus 272 ~gp~viE~N~-R~ 283 (424)
|+||+|+|+ -.
T Consensus 152 -g~~l~EVNvtsP 163 (176)
T pfam02955 152 -GDYLTEINVTSP 163 (176)
T ss_pred -CCEEEEEECCCC
T ss_conf -790889958890
No 74
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.75 E-value=4.6e-09 Score=85.48 Aligned_cols=99 Identities=26% Similarity=0.290 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE-EEEEECCCCCCC----CCCCHHHHHHHHHHHHHHHCCC-----
Q ss_conf 235788876531011112234401111121012420-256304653430----0023235677888788751445-----
Q gi|254780206|r 104 SFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP-IVVKADGLCAGK----GVVVAATVDEATSAIDRCFQQI----- 173 (424)
Q Consensus 104 ~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P-vVVKp~~~agGk----GV~i~~~~~e~~~~~~~~~~~~----- 173 (424)
.-+|++|+++|||+|++..+++.+|+.+++++++.| +|||+--++||| ||.+++|.+|+.++.+++|+..
T Consensus 6 yqaKell~~~gIpvp~g~v~~~~~ea~~~~~~l~~~~~VvKAQV~aGGRGKaGGVk~~~s~~ea~~~a~~ilg~~lvT~Q 85 (388)
T PRK00696 6 YQAKELLAEYGVPVPRGYVAFTPEEAVEAAEELGGPVWVVKAQVHAGGRGKAGGVKVAKSKEEVRAAAEEILGKDLVTHQ 85 (388)
T ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEC
T ss_conf 99999999869989997377999999999998299958999805458888686079908999999999998567742101
Q ss_pred -------CHHHHHHHHHH-CCCCCEEEECCCCCCCCC
Q ss_conf -------31777887752-057523442157763103
Q gi|254780206|r 174 -------NSTVIIEEYLE-GFEVSFFALCDGKTAIPF 202 (424)
Q Consensus 174 -------~~~VliEefl~-G~E~Sv~~i~dG~~~~~l 202 (424)
-..|+|||.++ -.|+-+..+.|..+-.|+
T Consensus 86 Tg~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~~~~ 122 (388)
T PRK00696 86 TGPEGQPVNRLLIEEGADIAKELYLSAVVDRATRRVV 122 (388)
T ss_pred CCCCCCEEEEEEEEECCCHHHHEEEEEEEECCCCCEE
T ss_conf 5888844479998751661240689999864778579
No 75
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.64 E-value=2.3e-06 Score=65.95 Aligned_cols=263 Identities=18% Similarity=0.243 Sum_probs=144.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHH-HH----CCEEEECCCCCHHHHH-----HHHHHHCCCEEEECC
Q ss_conf 9589988658899999999858996789995498357-51----1705512878989999-----999871897999979
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGI-AQ----HAQCVAIDIQNHSAII-----HFCQEKHIDLVVVGP 70 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~-~~----~~~~~~i~~~d~~~i~-----~~a~~~~iDlvivgp 70 (424)
++|.++||-.-=| +..-.++...-+-++|-.|...+ .. .++.+.++ ++..++ +.-++.+ .++| |
T Consensus 15 i~I~tlgSHSALq-Il~GAK~EGF~Tv~vc~kgRe~~Y~~f~~~~De~iv~d--~f~di~~~~~q~~L~~~N--aI~I-P 88 (363)
T PRK13277 15 VKIGVLASHSALD-VLDGAKDEGFRTIAVCQRGRERTYREFKGIVDEVIVLD--KFKDILSEEIQEELREEN--AIFV-P 88 (363)
T ss_pred CEEEEEECHHHHH-HHCCHHHCCCCEEEEECCCCCCHHHHCCCCCCEEEEEC--CHHHHHHHHHHHHHHHCC--EEEE-C
T ss_conf 4799984425988-85448773994799957987524775557784699955--577775489999998789--7996-4
Q ss_pred CHHHHH--HHHHHHH-HCCCCEEECCHHHHHHHHCCHH--HHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf 557874--8998986-0588067010666555201023--5788876531011112234401111121012420256304
Q gi|254780206|r 71 ELPLVN--GISDALN-AAGFKVFGPSQRAAKLESSKSF--AKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKAD 145 (424)
Q Consensus 71 E~pL~~--gi~d~l~-~~gi~v~Gp~~~aa~le~sK~~--~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~ 145 (424)
--.+++ |. |.++ +..+|+|| ++..-+.|.+..- ...+|+++|||.|+ .+.+.++ +.-||+||.-
T Consensus 89 hgSfv~Y~G~-d~iE~~~~VP~FG-NR~lLrwEer~~~~~~~~LLe~Agi~~Pk--~~~~Pee-------IDr~VIVK~~ 157 (363)
T PRK13277 89 NRSFAVYVGY-DAIENEFPVPIFG-NRYLLRWEERTGEKNYYRLLEKAGIPRPR--TFKPPEE-------IDRPVIVKLP 157 (363)
T ss_pred CCCEEEEECH-HHHHCCCCCCEEC-CHHHHHHCCCCHHHHHHHHHHHCCCCCCC--CCCCHHH-------CCCCEEEEEC
T ss_conf 8884677448-8885068887114-75663223451167899999867999870--0599666-------7852699745
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHCCCCCEEEECC--CCCCCCCCCCCCCCCCCCC-
Q ss_conf 6534--30002323567788878875144------53177788775205752344215--7763103520001113566-
Q gi|254780206|r 146 GLCA--GKGVVVAATVDEATSAIDRCFQQ------INSTVIIEEYLEGFEVSFFALCD--GKTAIPFTTARDHKRIHDG- 214 (424)
Q Consensus 146 ~~ag--GkGV~i~~~~~e~~~~~~~~~~~------~~~~VliEefl~G~E~Sv~~i~d--G~~~~~l~~~~dyKr~~~~- 214 (424)
+-.| |||-+++.|.+|..+-.++..+. .-....||||+-|.-+-++-|.. -+++-.|..-+-|..--|+
T Consensus 158 gAkg~~grGyF~a~s~~ef~~k~~~li~~G~I~~e~l~~~~IeEyv~G~~~~~~fFySpl~~~lEllgiD~R~esniDg~ 237 (363)
T PRK13277 158 EAKRRLERGFFIAASYKDFYEKSERLIKQGVIDREDLEKARIEEYVIGAHFNFNYFYSPIRDRVELLGIDRRIQSNLDGF 237 (363)
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEECHHHH
T ss_conf 67787763589967989999999999875875722144437899843764665210253237503663111024141444
Q ss_pred -----------CCCCC---CCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHC-CCEEEEEEEEEEEEECCE-EEEEE
Q ss_conf -----------54444---434430000123443222010000089999986204-623566445448985570-48999
Q gi|254780206|r 215 -----------DIGPN---TGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKE-QNPFQGVLFAGLMITEQG-PYLIE 278 (424)
Q Consensus 215 -----------d~Gpn---TGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~-~~~y~G~l~~~~m~t~~g-p~viE 278 (424)
+.-|. ||- .|+ .+-+++..++.+ .=+..+++-+++ .....|++..+.++|++. -+|-|
T Consensus 238 ~rlpA~~Ql~~~~~p~~vvvGn----~p~-vlRESLL~~vf~-~ge~fV~ask~l~~pG~iGPFcLq~ivt~dle~vvFe 311 (363)
T PRK13277 238 VRLPAPQQLKLNEEPRYIEVGH----EPA-TIRESLLEKVFD-MGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYD 311 (363)
T ss_pred HCCCHHHHHCCCCCCCEEEECC----CCC-EEEHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEE
T ss_conf 2398678841689984599888----532-431765799999-9999999999746998614433568985886099999
Q ss_pred EEEEE-CCC
Q ss_conf 88651-477
Q gi|254780206|r 279 YNVRF-GDP 286 (424)
Q Consensus 279 ~N~R~-GDP 286 (424)
+.+|. |.+
T Consensus 312 vS~RI~gGt 320 (363)
T PRK13277 312 VAPRIGGGT 320 (363)
T ss_pred EECCCCCCC
T ss_conf 844214887
No 76
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.50 E-value=5.9e-06 Score=63.03 Aligned_cols=255 Identities=17% Similarity=0.282 Sum_probs=146.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCH--HHHH--CCEEEECCCCCHHHHH-----H-HHHHHCCCEEEECC
Q ss_conf 95899886588999999998589967899954983--5751--1705512878989999-----9-99871897999979
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNP--GIAQ--HAQCVAIDIQNHSAII-----H-FCQEKHIDLVVVGP 70 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~--g~~~--~~~~~~i~~~d~~~i~-----~-~a~~~~iDlvivgp 70 (424)
++|..+||-.-=| +....++...-.-+.|--|-+ -... ..+++.++ ++..++ + +.+.+ .++| |
T Consensus 19 i~Iat~gSHSaL~-Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~--~f~dil~~~iqe~L~~~n---~I~I-P 91 (361)
T COG1759 19 ITIATIGSHSALQ-ILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVD--KFSDILNEEIQEELRELN---AIFI-P 91 (361)
T ss_pred EEEEEEECCHHHH-HHHHHHHCCCCEEEEEECCCCCHHHHCCHHHEEEEEC--HHHHHHHHHHHHHHHHCC---EEEE-C
T ss_conf 6999851504788-8633776087279998357623676502023488952--047776489999998758---4994-2
Q ss_pred CHHH-----HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf 5578-----74899898605880670106665552010235788876531011112234401111121012420256304
Q gi|254780206|r 71 ELPL-----VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKAD 145 (424)
Q Consensus 71 E~pL-----~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~ 145 (424)
--.+ ..|+.+ +.-+|+|| +++.-+-|.+....+++|+++|||.|+ .+++.+| +.-|++||..
T Consensus 92 ~gSfv~Y~G~d~ie~---~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~--~~~~Pee-------Idr~ViVK~p 158 (361)
T COG1759 92 HGSFVAYVGYDGIEN---EFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPK--KYKSPEE-------IDRPVIVKLP 158 (361)
T ss_pred CCCEEEEECCHHHHH---CCCCCCCC-CHHHHHHHCCHHHHHHHHHHCCCCCCC--CCCCHHH-------CCCCEEEECC
T ss_conf 786478853144644---11466116-676753000335689999974999885--6699678-------6873698557
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHCCCCCEEEECC--CCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 6534300023235677888788751445------3177788775205752344215--776310352000111356654-
Q gi|254780206|r 146 GLCAGKGVVVAATVDEATSAIDRCFQQI------NSTVIIEEYLEGFEVSFFALCD--GKTAIPFTTARDHKRIHDGDI- 216 (424)
Q Consensus 146 ~~agGkGV~i~~~~~e~~~~~~~~~~~~------~~~VliEefl~G~E~Sv~~i~d--G~~~~~l~~~~dyKr~~~~d~- 216 (424)
+--||||-+++.|.+|..+-.++..+.. -..+.||||+-|.-+-++-|.. -..+-.+..- |.++.+.
T Consensus 159 gAkggRGyFiA~s~eef~ek~erl~~~gvi~~Edlkna~IeEYv~G~~f~~~yFyS~i~~~lEl~g~D----~R~Esn~D 234 (361)
T COG1759 159 GAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFYFHYFYSPIKDRLELLGID----RRYESNLD 234 (361)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCEEEEEEECCCEEEEEEECCCCCCEEEEEEE----HHEECCCH
T ss_conf 76677437997698999999999987287653443213544775066013455202345704576300----20131621
Q ss_pred -------------C--CC---CCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHC-CCEEEEEEEEEEEEECC-EEEE
Q ss_conf -------------4--44---434430000123443222010000089999986204-62356644544898557-0489
Q gi|254780206|r 217 -------------G--PN---TGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKE-QNPFQGVLFAGLMITEQ-GPYL 276 (424)
Q Consensus 217 -------------G--pn---TGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~-~~~y~G~l~~~~m~t~~-gp~v 276 (424)
+ |. +|- -|+ .+-+++..++.+ .-+..++|-++. .....|.+..+-|+|++ .-+|
T Consensus 235 g~~RlPa~~ql~l~~~ptyvv~Gn----~p~-vlRESLL~~vfe-~ger~V~a~kel~~PG~iGpFcLq~i~t~dl~~vV 308 (361)
T COG1759 235 GLVRLPAKDQLELNLEPTYVVVGN----IPV-VLRESLLPKVFE-MGERFVEATKELVPPGIIGPFCLQTIVTDDLEFVV 308 (361)
T ss_pred HHCCCCHHHHHHCCCCCEEEEECC----CCH-HHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEE
T ss_conf 211578789974589952899878----513-247777899999-99999999987459985132002001468751899
Q ss_pred EEEEEEE-CC
Q ss_conf 9988651-47
Q gi|254780206|r 277 IEYNVRF-GD 285 (424)
Q Consensus 277 iE~N~R~-GD 285 (424)
-|+.+|. |+
T Consensus 309 FevS~Ri~gG 318 (361)
T COG1759 309 FEVSARIVGG 318 (361)
T ss_pred EEEECCCCCC
T ss_conf 9975310477
No 77
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=98.47 E-value=5.1e-07 Score=70.71 Aligned_cols=180 Identities=19% Similarity=0.246 Sum_probs=100.1
Q ss_pred HCCHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHCC-CC-EEEEEECCCCCCCCCCCHHH---------------HHHH
Q ss_conf 0102357888765310111-12234401111121012-42-02563046534300023235---------------6778
Q gi|254780206|r 101 SSKSFAKKFCTKYGIPTAT-YQHFSDPMKAKQYVQNK-SM-PIVVKADGLCAGKGVVVAAT---------------VDEA 162 (424)
Q Consensus 101 ~sK~~~K~~l~~~gIPt~~-~~~~~~~~ea~~~~~~~-g~-PvVVKp~~~agGkGV~i~~~---------------~~e~ 162 (424)
.||..||.+...+||-.|. |-+.++..|+..+=+-+ ++ -+||||.-.|||+|+.|+.+ .+|.
T Consensus 36 DDKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eei 115 (320)
T TIGR02291 36 DDKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEI 115 (320)
T ss_pred CCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHH
T ss_conf 31367889987336711013010023466543466627889836726606798727997036688403541010154567
Q ss_pred HHHHHHHH------CCCCHHHHHHHHHHCC----CCCEEEECCCCCCCCC--C---CCCCCCCCCCCCCCCCCCCCCE--
Q ss_conf 88788751------4453177788775205----7523442157763103--5---2000111356654444434430--
Q gi|254780206|r 163 TSAIDRCF------QQINSTVIIEEYLEGF----EVSFFALCDGKTAIPF--T---TARDHKRIHDGDIGPNTGGMGA-- 225 (424)
Q Consensus 163 ~~~~~~~~------~~~~~~VliEefl~G~----E~Sv~~i~dG~~~~~l--~---~~~dyKr~~~~d~GpnTGGMGa-- 225 (424)
+..+..++ +...+..|||-.+.-. -+|...+=|=..+++. | ..|==-|..||--...-|..|+
T Consensus 116 E~hvSniL~GLySLGG~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKANLHQGAvGvGi 195 (320)
T TIGR02291 116 ERHVSNILAGLYSLGGKRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKANLHQGAVGVGI 195 (320)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 78888888777650799773688532010534477111345872689641861021002765678883021246024202
Q ss_pred -----------EE--C---CCCCCCCCCEEE----ECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC-CEEEEEEEEEEEC
Q ss_conf -----------00--0---123443222010----0000899999862046235664454489855-7048999886514
Q gi|254780206|r 226 -----------CS--P---ALGMSQELYSTV----IQKIILPTIEGMQKEQNPFQGVLFAGLMITE-QGPYLIEYNVRFG 284 (424)
Q Consensus 226 -----------~~--p---~~~~~~~~~~~i----~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~-~gp~viE~N~R~G 284 (424)
+- | .|-...++ +-+ =++.++-+..+...-|+.|-| +|++|++ .||-|||.|+|.|
T Consensus 196 DlaTG~t~~a~w~n~pi~~HPDTg~~~-sglq~PhW~~ll~LAa~c~el~GLGY~G---vD~VLDke~GPlvLELNARPG 271 (320)
T TIGR02291 196 DLATGKTLRAVWLNQPIEKHPDTGKDV-SGLQVPHWEKLLKLAAECYELVGLGYLG---VDMVLDKEKGPLVLELNARPG 271 (320)
T ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCC-CCEECCCHHHHHHHHHHHHHHCCCCCCC---EEEEEECCCCCEEEEECCCCC
T ss_conf 311450321242067614583888753-5101667778999998775430676002---106874579881786447887
No 78
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.45 E-value=4.4e-06 Score=63.93 Aligned_cols=220 Identities=14% Similarity=0.166 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHCCC--EEEE--CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CC
Q ss_conf 989999999871897--9999--79557874899898605880670106665552010235788876531011112--23
Q gi|254780206|r 50 NHSAIIHFCQEKHID--LVVV--GPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HF 123 (424)
Q Consensus 50 d~~~i~~~a~~~~iD--lviv--gpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~ 123 (424)
...++.++++..... .+++ -.|. ..+ .++.|+.++-|+++--+...||.-+-.+-.++|+|+.++. .+
T Consensus 78 qhpEv~~~ik~rg~~gk~~fvmfdEeT---e~L---a~~lGl~v~~P~a~LR~~ldsKi~t~Rlgn~AGvpsVPnvl~~v 151 (480)
T PRK06524 78 RDPETLEFIKNRGPGGKACFVMFDEET---QAL---ARQAGLEVMHPPAELRHRLDSKIVMTRLADEAGVPSVPHVIGRV 151 (480)
T ss_pred CCHHHHHHHHHCCCCCEEEEEEECHHH---HHH---HHHHCCCEECCHHHHHHHHCCEEEEEEECCCCCCCCCCCEEECC
T ss_conf 298999999843898758999956378---999---99709727558299997743611467521115887676300035
Q ss_pred CCCHHHHHHHHC--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 440111112101--242025630465343000232356778887887514453177788775205752344215776310
Q gi|254780206|r 124 SDPMKAKQYVQN--KSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIP 201 (424)
Q Consensus 124 ~~~~ea~~~~~~--~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~ 201 (424)
.+++++.+..++ +|--+||-.....+|+..+.+.++.|..++-.++.++ ..+=|=+.|.-.+..+++-.-....+.
T Consensus 152 ~sY~~L~~~~~~aglG~DLVvQt~~GdsG~tTFFi~~e~D~~k~a~eIvge--~eiKiMKRI~~~~~aiEac~T~~GTiv 229 (480)
T PRK06524 152 DSYEELSALAHEAGLGDDLVVQTAYGDAGSTTFFVRGERDWDKYAGEIVGQ--PEIKVMKRIRNVEVCIEACVTRHGTVI 229 (480)
T ss_pred CCHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECHHHHHHHHHHHHCC--CHHHHHHHHCCCCCCEEEEECCCCEEE
T ss_conf 669999999887088863588425678874169972565676757764066--315344342476411112200387363
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCC----CCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC--CEEE
Q ss_conf 35200011135665444443443000012----34432220100000899999862046235664454489855--7048
Q gi|254780206|r 202 FTTARDHKRIHDGDIGPNTGGMGACSPAL----GMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE--QGPY 275 (424)
Q Consensus 202 l~~~~dyKr~~~~d~GpnTGGMGa~~p~~----~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~--~gp~ 275 (424)
-|...+ -++-.+.-|--|| +|-.. .+++...++. ++...+.=+.|.++| |+|++-+++.+.. +..|
T Consensus 230 gP~MTe--lvGf~ELTPykGg---WCGNei~~~~~~p~~r~ka-re~~~k~Gd~L~~eG--YrGyFevDfLiD~dt~evy 301 (480)
T PRK06524 230 GPAMTS--LVGYPELTPYRGA---WCGNDIWRGALPPAQTRAA-REMVAKLGDVLSREG--YRGYFEVDLLHDLDADELY 301 (480)
T ss_pred CHHHHH--HCCCCCCCCCCCC---CCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHCC--CCCEEEEEEEEECCCCCEE
T ss_conf 246775--4284116766776---4355455022891366999-999999879987445--6635899998855778475
Q ss_pred EEEEEEEE-CC
Q ss_conf 99988651-47
Q gi|254780206|r 276 LIEYNVRF-GD 285 (424)
Q Consensus 276 viE~N~R~-GD 285 (424)
+=|.|.|. |-
T Consensus 302 LGElNPRisGA 312 (480)
T PRK06524 302 LGEVNPRLSGA 312 (480)
T ss_pred EECCCCCCCCC
T ss_conf 40367644488
No 79
>PRK12458 glutathione synthetase; Provisional
Probab=98.28 E-value=4.4e-06 Score=63.93 Aligned_cols=229 Identities=16% Similarity=0.196 Sum_probs=131.3
Q ss_pred CCCEEEECCCHH-----H--H----HHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 897999979557-----8--7----4899898605880670106665552010235788876531011112234401111
Q gi|254780206|r 62 HIDLVVVGPELP-----L--V----NGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAK 130 (424)
Q Consensus 62 ~iDlvivgpE~p-----L--~----~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~ 130 (424)
..|.|++=-+-| | . .-+-+..++.|..|+ -+..+.|-...|.|+-+|.+- -+|+.-+-+|.++++
T Consensus 85 ~~D~I~mRkDPPfD~~yln~~~yi~~~~l~~~~~~gv~VI-N~P~slR~~nEKL~~~~Fp~~---i~P~TLVT~d~~~I~ 160 (349)
T PRK12458 85 GFDVLFLRNNPSLDNLARPWADSVGIIFGRLAMRDGVLVL-NDPDGLRIANNKLYFQSFPEE---VRPTTHISRNREEIR 160 (349)
T ss_pred HCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE-CCHHHHHCCCCHHHHHHCCCC---CCCCEEEECCHHHHH
T ss_conf 6989999489999831265999999999987650898898-185998617012006415554---798779867999999
Q ss_pred HHHHCCCC-EEEEEECCCCCCCCCCCHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHCCCC-CE-EEECCCCCCCC----C
Q ss_conf 12101242-02563046534300023235677-888788751445317778877520575-23-44215776310----3
Q gi|254780206|r 131 QYVQNKSM-PIVVKADGLCAGKGVVVAATVDE-ATSAIDRCFQQINSTVIIEEYLEGFEV-SF-FALCDGKTAIP----F 202 (424)
Q Consensus 131 ~~~~~~g~-PvVVKp~~~agGkGV~i~~~~~e-~~~~~~~~~~~~~~~VliEefl~G~E~-Sv-~~i~dG~~~~~----l 202 (424)
+|+++.+. .+|+||-+..||+||+.++..++ -...+-+.+.. .+.|++++||.-..- .. ..+.||+-+-. -
T Consensus 161 ~F~~~~k~~~iIlKPL~G~GG~gIf~i~~~d~~Nl~~I~e~~~~-~~~vm~Q~flpei~~GDkRIilinGepi~~~~~~g 239 (349)
T PRK12458 161 AFLEESPSDKMILKPLQGSGGQGVFLIEKSAESNLNQILEFYSG-DGYVIAQEYIPGAEEGDVRILMLNGEPLERDGRYA 239 (349)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHC-CCCEEEECCCHHCCCCCEEEEEECCEEECCCCCEE
T ss_conf 99998158838986467888876388635743419999999704-88199992100341688699999999911445413
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEE
Q ss_conf 52000111356654444434430000123443222010000089999986204623566445448985570489998865
Q gi|254780206|r 203 TTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVR 282 (424)
Q Consensus 203 ~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R 282 (424)
...|-. ..+|-=..-..||.+..++ ++++ ..+|++.+...|.+.|+-|.| +|++ |-|+.|+|+-
T Consensus 240 al~RiP-~~gd~R~Nl~~GG~~~~~~---Lt~~-----d~~I~~~i~p~L~~~gl~fvG---iDvI----G~~LtEINVT 303 (349)
T PRK12458 240 AMRRVP-AEGDVRSNIHAGGTVVKHT---LTKE-----ELELCEHIRPKLVRDGLFFVG---LDIV----GDKLIEVNVF 303 (349)
T ss_pred EEECCC-CCCCHHHHHHCCCCCCCCC---CCHH-----HHHHHHHHHHHHHHCCCEEEE---EEEE----CCCEEEECCC
T ss_conf 565356-6761355652688630368---8999-----999999999999987998999---9861----7845688178
Q ss_pred ECCCCCEEEEECC-CCCCHHHHHHHHHCCCCC
Q ss_conf 1477510443326-544115666542013333
Q gi|254780206|r 283 FGDPECQAMMMRL-ESDILEILNSCVHGNLHN 313 (424)
Q Consensus 283 ~GDPE~q~ilp~L-~~dl~~il~~~~~g~L~~ 313 (424)
- |.+..=+-.+ ..|+...+..+++.++..
T Consensus 304 S--Ptgi~ei~~~~~~~~a~~~~d~~E~~~~~ 333 (349)
T PRK12458 304 S--PGGLGRINKLNNVDFSETIINAKERKVQR 333 (349)
T ss_pred C--CHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9--60299998751998699999999999998
No 80
>pfam05770 Ins134_P3_kin Inositol 1, 3, 4-trisphosphate 5/6-kinase. This family consists of several inositol 1, 3, 4-trisphosphate 5/6-kinase proteins. Inositol 1,3,4-trisphosphate is at a branch point in inositol phosphate metabolism. It is dephosphorylated by specific phosphatases to either inositol 3,4-bisphosphate or inositol 1,3-bisphosphate. Alternatively, it is phosphorylated to inositol 1,3,4,6-tetrakisphosphate or inositol 1,3,4,5-tetrakisphosphate by inositol trisphosphate 5/6-kinase.
Probab=97.84 E-value=0.0002 Score=51.91 Aligned_cols=231 Identities=13% Similarity=0.242 Sum_probs=122.0
Q ss_pred HHHHHHHHHHCCCEEEECCCHHHHH-H-----------------HHHHHHHC-CCCEEECCHHHHHHHHCCHHHHHHHHH
Q ss_conf 9999999871897999979557874-8-----------------99898605-880670106665552010235788876
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPELPLVN-G-----------------ISDALNAA-GFKVFGPSQRAAKLESSKSFAKKFCTK 112 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE~pL~~-g-----------------i~d~l~~~-gi~v~Gp~~~aa~le~sK~~~K~~l~~ 112 (424)
.++..+|++.+|+++-+-++.||.. | +-++.+++ ++.++-|.....+| .|+..|-+.+.+
T Consensus 25 ~~f~~~~~~~gi~~v~ID~~~pL~~QGPfDvilHKltd~~~~~~l~~y~~~hP~v~viDP~~ai~~L-~dR~~m~~~v~~ 103 (307)
T pfam05770 25 PSLAELARKRGIDLVQLDPSRPLSEQGPFDIIIHKLTDKEWRHRLEEFREAHPEVPVLDPPPAIRRL-HNRQSMLQVVAD 103 (307)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCHHHHHHH-HCHHHHHHHHHH
T ss_conf 9999989767967998789998455498269999656289999999999978997897799999998-789999999998
Q ss_pred HH-------HHCCCCCCCC-CCHHHHHHHH--CCCCEEEEEE---CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 53-------1011112234-4011111210--1242025630---46534300023235677888788751445317778
Q gi|254780206|r 113 YG-------IPTATYQHFS-DPMKAKQYVQ--NKSMPIVVKA---DGLCAGKGVVVAATVDEATSAIDRCFQQINSTVII 179 (424)
Q Consensus 113 ~g-------IPt~~~~~~~-~~~ea~~~~~--~~g~PvVVKp---~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~Vli 179 (424)
.+ +-+|++-.+. +.++..+.+. .+.||+|.|| +|.+.+.-+.++.+.+.+.+ -.-+.++
T Consensus 104 l~~~~~~~~v~~P~~v~i~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Malvf~~~gL~~--------L~pP~Vl 175 (307)
T pfam05770 104 LNLSMEDGRFGVPPQVVVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSHEMSLVYDQEGLNK--------LQPPLVL 175 (307)
T ss_pred HCCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCEEECCHHCCCCCCCCEEEEEECHHHHHC--------CCCCEEE
T ss_conf 10656798383697799728677889999975986765623300257856534789977757622--------7997588
Q ss_pred HHHHH--CCCCCEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCE--EECCC---CCCC-----CCCEEEECCHH
Q ss_conf 87752--057523442157763103--52000111356654444434430--00012---3443-----22201000008
Q gi|254780206|r 180 EEYLE--GFEVSFFALCDGKTAIPF--TTARDHKRIHDGDIGPNTGGMGA--CSPAL---GMSQ-----ELYSTVIQKII 245 (424)
Q Consensus 180 Eefl~--G~E~Sv~~i~dG~~~~~l--~~~~dyKr~~~~d~GpnTGGMGa--~~p~~---~~~~-----~~~~~i~~~i~ 245 (424)
+||+. |.=+-+.++ |+++... +...| ...++..-.+|-+-. +|..+ .... ...+.--...+
T Consensus 176 QefvNH~gvlfKvyVv--Gd~~~vv~R~Slpn---~~~~~~~~~~~~~~f~~vS~~~~~~~~~~~~~~~~~~~~p~~~~~ 250 (307)
T pfam05770 176 QEFVNHGGVLFKVYVV--GEHVTVVKRRSLPD---VSAGTLDRSSGSFRFSQVSNLTASADDAELDKILEIAEMPPDPFL 250 (307)
T ss_pred EEEECCCCEEEEEEEE--CCEEEEEECCCCCC---CCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCCHHHH
T ss_conf 9875478679999996--43789996467778---773323465641331004677788622321356520239998999
Q ss_pred HHHHHHHHHC-CCEEEEEEEEEEEEECC---EEEEEEEEEEECCCCCEEEEECCCCCCHHHH
Q ss_conf 9999986204-62356644544898557---0489998865147751044332654411566
Q gi|254780206|r 246 LPTIEGMQKE-QNPFQGVLFAGLMITEQ---GPYLIEYNVRFGDPECQAMMMRLESDILEIL 303 (424)
Q Consensus 246 ~~~~~~l~~~-~~~y~G~l~~~~m~t~~---gp~viE~N~R~GDPE~q~ilp~L~~dl~~il 303 (424)
+...++|++. |+.-- .++++..+. .-+||.+|-=.|.= =||-.++.|.+.+
T Consensus 251 ~~la~~LR~~lgL~LF---gfDvI~~~~t~~r~~VIDINyFPgY~----~vP~~e~~l~df~ 305 (307)
T pfam05770 251 EDLARALRRALGLRLF---NFDIIRDAGTADRYLVIDINYFPGYA----KMPEYETVLTDFF 305 (307)
T ss_pred HHHHHHHHHHCCCEEE---CEEEEEECCCCCEEEEEEECCCCCCC----CCCCHHHHHHHHH
T ss_conf 9999999998099496---64899988989858999906798988----8887299999984
No 81
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.80 E-value=0.00048 Score=49.22 Aligned_cols=109 Identities=23% Similarity=0.244 Sum_probs=76.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHH-HHC-------CEEEECCCCCHHHHHHHHHHHCCCEEEECCCH
Q ss_conf 9589988658899999999858996789995498357-511-------70551287898999999987189799997955
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGI-AQH-------AQCVAIDIQNHSAIIHFCQEKHIDLVVVGPEL 72 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~-~~~-------~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~ 72 (424)
|||||||+|+--+++||+|.++.. .+|+++.-++.- ..+ .+...+|..|.+++.++.++. |+||-.---
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~--d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDF--DLVINAAPP 78 (389)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC--CEEEEECCC
T ss_conf 728998986667999999985789-62999848888999987533466316994256758899987257--789992870
Q ss_pred HHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 78748998986058806701066655520102357888765310
Q gi|254780206|r 73 PLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 73 pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP 116 (424)
++...+.+++-+.|+.++=.+.. +-+....++.++++|+-
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~----~~~~~~~~~~a~~Agit 118 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYY----EEPPWKLDEEAKKAGIT 118 (389)
T ss_pred HHHHHHHHHHHHHCCCEEECCCC----CCHHHHHHHHHHHCCCE
T ss_conf 54299999999859988975467----75065654898874907
No 82
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=97.39 E-value=0.0021 Score=44.64 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=61.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH----HCCEE-EEC-------CCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 5899886588999999998589967899954983575----11705-512-------87898999999987189799997
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIA----QHAQC-VAI-------DIQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~-~~i-------~~~d~~~i~~~a~~~~iDlvivg 69 (424)
||||++.|--.--+++++++-. +..|.+. -||-+. ..++. +.+ ...|.+.|++.|+++++|.+++|
T Consensus 3 kvLIanrGeiA~ri~rt~re~g-i~~v~i~-s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~~~~~~aihpG 80 (109)
T pfam00289 3 KVLVANRGEIAVRIIRALRELG-IETVAVN-SNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAEKEGADAIHPG 80 (109)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEE-CHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf 8999888799999999999869-9799996-3344152256650576534799832111379999999998188968779
Q ss_pred ----CCHHHHHHHHHHHHHCCCCEEECCHHH
Q ss_conf ----955787489989860588067010666
Q gi|254780206|r 70 ----PELPLVNGISDALNAAGFKVFGPSQRA 96 (424)
Q Consensus 70 ----pE~pL~~gi~d~l~~~gi~v~Gp~~~a 96 (424)
+|.+ .+++.+++.|+.++||+.++
T Consensus 81 yGflsEn~---~fa~~~~~~Gi~fiGPs~~~ 108 (109)
T pfam00289 81 YGFLSENA---EFAEACEKAGITFIGPSPEA 108 (109)
T ss_pred CCCCCCCH---HHHHHHHHCCCEEECCCHHH
T ss_conf 76233599---99999998889899958354
No 83
>pfam02571 CbiJ Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <= precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway.
Probab=97.08 E-value=0.012 Score=39.24 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=66.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHH--CCEE--EEC-CCCCHHHHHHHHHHHCCCEEEECCCHHH-
Q ss_conf 958998865889999999985899678999549835751--1705--512-8789899999998718979999795578-
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQ--HAQC--VAI-DIQNHSAIIHFCQEKHIDLVVVGPELPL- 74 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~--~~~~--~~i-~~~d~~~i~~~a~~~~iDlvivgpE~pL- 74 (424)
|||||+|+=+=-+.|+..|.+...+ .++. .-++-.. ...+ +.. ...|.+.+.+|+++++|++||=.. -|.
T Consensus 1 ~~IlilgGT~e~r~la~~L~~~g~~-~v~t--~~~~~~~~~~~~~~~~~~G~l~~~~~m~~~i~~~~i~~vIDAT-HPfA 76 (246)
T pfam02571 1 MRILILGGTTEARALAAALAAAGVV-SVVT--SLAGRTAAPRLPPLPVRVGGFGGADGLAAYLREEGIDAVIDAT-HPFA 76 (246)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCE-EEEE--CCCHHHCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEECC-CCCH
T ss_conf 9699997368999999999856987-9998--4755443766788508979989999999999977997999899-9968
Q ss_pred ---HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf ---7489989860588067010666555201023578887653101111223440111112101242
Q gi|254780206|r 75 ---VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM 138 (424)
Q Consensus 75 ---~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~ 138 (424)
..-..++.++.|||++ |+| |.-. .--|...+..++|.++|.+++.+.+.
T Consensus 77 ~~is~na~~a~~~~~ipyi-------R~e------Rp~~--~~~~~d~~~~v~s~~ea~~~l~~~~~ 128 (246)
T pfam02571 77 AQISRNAAAACKELGVPLL-------RLE------RPAW--QPGPGDRWIYVDSLAEAAAALAELPG 128 (246)
T ss_pred HHHHHHHHHHHHHHCCCEE-------EEC------CCCC--CCCCCCCEEEECCHHHHHHHHHHCCC
T ss_conf 9999999999998599689-------960------6212--67889877997999999998764678
No 84
>TIGR01380 glut_syn glutathione synthase; InterPro: IPR006284 These are the glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. ; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process.
Probab=97.06 E-value=0.00039 Score=49.89 Aligned_cols=227 Identities=23% Similarity=0.346 Sum_probs=126.8
Q ss_pred HHHHHHHHHH-----H-CCCEEEECCCHH-----H-HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 8999999987-----1-897999979557-----8-74899898605880670106665552010235788876531011
Q gi|254780206|r 51 HSAIIHFCQE-----K-HIDLVVVGPELP-----L-VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTA 118 (424)
Q Consensus 51 ~~~i~~~a~~-----~-~iDlvivgpE~p-----L-~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~ 118 (424)
...=.++.++ . +.|.|+.=-+-| | +.-+=+.++..|+.|+ -+..+.|=.-=|.|+-.| .+. +|
T Consensus 71 ~~~w~~~~~~~~~~L~d~~d~vlMRkDPPf~~~Y~yaT~lLe~~~~~g~~vi-N~P~~lRd~NEKl~~~~F-p~~---~p 145 (322)
T TIGR01380 71 KQDWYTLGEKVRLALKDELDVVLMRKDPPFDMEYIYATYLLELAEPTGTLVI-NSPQGLRDANEKLFALQF-PKV---IP 145 (322)
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE-ECCCHHHCCCHHHHHHCC-CCC---CC
T ss_conf 1278887665420113574299984750986315446778877842796798-488232246603454334-123---58
Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHCCCCCE----EEE
Q ss_conf 112234401111121012420256304653430002323567-788878875144531777887752057523----442
Q gi|254780206|r 119 TYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVD-EATSAIDRCFQQINSTVIIEEYLEGFEVSF----FAL 193 (424)
Q Consensus 119 ~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~-e~~~~~~~~~~~~~~~VliEefl~G~E~Sv----~~i 193 (424)
+--+-++..+...|+++++ -+|+||=+..||.||......+ .+-.-++.........|++++||+ |++- ..+
T Consensus 146 pTLvt~~~~~ir~F~~e~~-divLKPL~g~GG~gi~Rl~~~DpN~~~i~E~~~~~g~~~~~aQ~ylp--ei~~GDKRilL 222 (322)
T TIGR01380 146 PTLVTRDKAEIRAFLAEHG-DIVLKPLDGMGGEGIFRLDPGDPNLNSILETLTQLGREPVMAQRYLP--EIKEGDKRILL 222 (322)
T ss_pred CCCEECCHHHHHHHHHHHH-CEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECHH--HHHHCCCEEEE
T ss_conf 8501067799999998751-25872666777843676178998556898887652671687650205--76617965999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEE
Q ss_conf 1577631035200011135665---4444434430000123443222010000089999986204623566445448985
Q gi|254780206|r 194 CDGKTAIPFTTARDHKRIHDGD---IGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMIT 270 (424)
Q Consensus 194 ~dG~~~~~l~~~~dyKr~~~~d---~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t 270 (424)
.||+ |.+.|. -|+=.++ ..--.||-|.-.| +++.. .+| .+.+.|. |++. |.+++|+ +
T Consensus 223 ~~G~---Pig~a~--~Rip~~gE~RgNlavGG~~~a~~---L~~rD-~eI-c~~~~P~---L~~r-----Gl~fvGi--D 282 (322)
T TIGR01380 223 IDGE---PIGYAV--ARIPAGGEFRGNLAVGGRGEAQE---LSERD-REI-CATVAPE---LKRR-----GLLFVGI--D 282 (322)
T ss_pred ECCE---ECCCCE--EECCCCCCCCHHHCCCCEEEECC---CCHHH-HHH-HHHHCCC---CCCC-----CEEEEEE--E
T ss_conf 7883---500101--40278875000200288622002---66789-999-9871610---0207-----7479754--6
Q ss_pred CCEEEEEEEEEEECCCCCEEEEECCCC-CCHHHHHHHH
Q ss_conf 570489998865147751044332654-4115666542
Q gi|254780206|r 271 EQGPYLIEYNVRFGDPECQAMMMRLES-DILEILNSCV 307 (424)
Q Consensus 271 ~~gp~viE~N~R~GDPE~q~ilp~L~~-dl~~il~~~~ 307 (424)
==|=|+.|+|+-- |.|-.=+.++++ ++.+.+.+.+
T Consensus 283 VIG~~LTEvNVTS--PTGi~Ei~~~~G~~~~~~~~d~~ 318 (322)
T TIGR01380 283 VIGGYLTEVNVTS--PTGIREIDRQKGVNIAEQLIDAI 318 (322)
T ss_pred EECCCCEEEECCC--CHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7778007983146--45689887635855899999998
No 85
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=96.95 E-value=0.0056 Score=41.52 Aligned_cols=111 Identities=23% Similarity=0.286 Sum_probs=63.1
Q ss_pred CEEEEECCC--HHHHHHHHHHHHC-CCCCEEEEECCCHHHHH-CCEEEECC-CCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 958998865--8899999999858-99678999549835751-17055128-7898999999987189799997955787
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQS-PLLSELWSIPGNPGIAQ-HAQCVAID-IQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s-~~~~~v~~~pgN~g~~~-~~~~~~i~-~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
|||.|||.| |+.|+.. +.++ +...-+.++.-|+.... ..+...+. ..|.+ ++.+..++|+|++.....+-
T Consensus 1 iki~iiG~G~~g~~~~~~--~~~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~iD~v~I~tp~~~H 75 (120)
T pfam01408 1 LRVGIVGAGKIGRRHLRA--LNESQDGAELVGVLDPDPARAEAVAESFGVPAYSDLE---ELLADPDVDAVSVATPPGLH 75 (120)
T ss_pred CEEEEEECHHHHHHHHHH--HHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEECCHH---HHHHCCCCCEEEECCCHHHH
T ss_conf 989999077999999999--9855999789999829999999999983996788699---99737788989990874618
Q ss_pred HHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 489989860588067010666555201023578887653101
Q gi|254780206|r 76 NGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT 117 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt 117 (424)
..++..+-+.|.++|.-..-+.-++.-+.. .+..+++|++.
T Consensus 76 ~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l-~~~a~~~~~~~ 116 (120)
T pfam01408 76 FELALAALEAGKHVLVEKPLATTVEEAKEL-VELAEKKGVRL 116 (120)
T ss_pred HHHHHHHHHHCCEEEEECCCCCCHHHHHHH-HHHHHHCCCEE
T ss_conf 999999998199899968981999999999-99999829969
No 86
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.84 E-value=0.025 Score=36.87 Aligned_cols=120 Identities=23% Similarity=0.297 Sum_probs=75.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHH--HHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 9589988658899999999858996789995498357--51170551287898999999987189799997955787489
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGI--AQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~--~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi 78 (424)
|+|||+|+-+-.-+|+.+|...+....+..+-|-.+. .+....+.--..+.+.+.+|.++++||++|=.. -|.++-+
T Consensus 3 ~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDAT-HPyAa~i 81 (257)
T COG2099 3 MRILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDAT-HPYAARI 81 (257)
T ss_pred CEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCCCEEECCCCCHHHHHHHHHHCCCCEEEECC-CHHHHHH
T ss_conf 359998263899999998620686179997034442411105886652768878999999974988899788-7579999
Q ss_pred ----HHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf ----98986058806701066655520102357888765310111122344011111210124
Q gi|254780206|r 79 ----SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKS 137 (424)
Q Consensus 79 ----~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g 137 (424)
+...++.|||++ ++| |--.... -.++..+.|.+||.+.+.+.+
T Consensus 82 S~Na~~aake~gipy~-------r~e------RP~~~~~---gd~~~~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 82 SQNAARAAKETGIPYL-------RLE------RPPWAPN---GDNWIEVADIEEAAEAAKQLG 128 (257)
T ss_pred HHHHHHHHHHHCCCEE-------EEE------CCCCCCC---CCCEEEECCHHHHHHHHHCCC
T ss_conf 8999999998599679-------987------7755457---996698458999999875047
No 87
>KOG2799 consensus
Probab=96.80 E-value=0.00033 Score=50.44 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC-EEEEEECCCCCCC-----------CCCCHHHHHHHHHHHHHHHCC
Q ss_conf 3578887653101111223440111112101242-0256304653430-----------002323567788878875144
Q gi|254780206|r 105 FAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM-PIVVKADGLCAGK-----------GVVVAATVDEATSAIDRCFQQ 172 (424)
Q Consensus 105 ~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~-PvVVKp~~~agGk-----------GV~i~~~~~e~~~~~~~~~~~ 172 (424)
..-++|.++|+.+|.+..+.|.|||.+.++.++- -+|||+--+|||| ||.++.+.+|+++....+.+.
T Consensus 29 ~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va~qmiG~ 108 (434)
T KOG2799 29 RSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVASQMIGK 108 (434)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCC
T ss_conf 89999997187888775568878999999970886459975201057666773767678637976758888889976340
Q ss_pred ---------C---CHHHHHHHHHHC-CCCCEEEECCCCCCCCCCCCC
Q ss_conf ---------5---317778877520-575234421577631035200
Q gi|254780206|r 173 ---------I---NSTVIIEEYLEG-FEVSFFALCDGKTAIPFTTAR 206 (424)
Q Consensus 173 ---------~---~~~VliEefl~G-~E~Sv~~i~dG~~~~~l~~~~ 206 (424)
+ ...|.|=|...+ .|+++..+.|.++--||.++.
T Consensus 109 kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas 155 (434)
T KOG2799 109 KLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIAS 155 (434)
T ss_pred EEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 20433347888843069985101305678899987304579779982
No 88
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.44 E-value=0.027 Score=36.60 Aligned_cols=135 Identities=16% Similarity=0.254 Sum_probs=66.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEEC--------CC
Q ss_conf 958998865889999999985899-678999549835751170551287898999999987189799997--------95
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPL-LSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVG--------PE 71 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~-~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivg--------pE 71 (424)
|||||.|++|. |.|.|.+.-. ..+|+... +..+|+.|.+.+.++.++.+||.||-. .|
T Consensus 1 M~iLi~G~~Gq---LG~~L~~~l~~~~~v~a~~----------~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE 67 (281)
T COG1091 1 MKILITGANGQ---LGTELRRALPGEFEVIATD----------RAELDITDPDAVLEVIRETRPDVVINAAAYTAVDKAE 67 (281)
T ss_pred CCEEEECCCCH---HHHHHHHHHCCCCEEEECC----------CCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 95899769876---7999999717784399515----------7655556858999999861999899873203654133
Q ss_pred H-HH----H-----HHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC-CCEE
Q ss_conf 5-78----7-----4899898605880670106665552010235788876531011112234401111121012-4202
Q gi|254780206|r 72 L-PL----V-----NGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNK-SMPI 140 (424)
Q Consensus 72 ~-pL----~-----~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~-g~Pv 140 (424)
. |- + .-++.+..+.|.+.+-.|.+.. .-++| ..-.++...|.|-...=.++-..+.++.+. ..-+
T Consensus 68 ~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyV-FDG~~---~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~~~~~~ 143 (281)
T COG1091 68 SEPELAFAVNATGAENLARAAAEVGARLVHISTDYV-FDGEK---GGPYKETDTPNPLNVYGRSKLAGEEAVRAAGPRHL 143 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEE-ECCCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 898997776779999999999971976999634457-43898---98887789999702454778978999997399879
Q ss_pred EEEECCCCCCCC
Q ss_conf 563046534300
Q gi|254780206|r 141 VVKADGLCAGKG 152 (424)
Q Consensus 141 VVKp~~~agGkG 152 (424)
|++.+.+.+..|
T Consensus 144 I~Rtswv~g~~g 155 (281)
T COG1091 144 ILRTSWVYGEYG 155 (281)
T ss_pred EEEEEEEECCCC
T ss_conf 998565545888
No 89
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.32 E-value=0.015 Score=38.40 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=38.4
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 958998865889-99999998589967899954983575117055128789899999998718979999
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
|||||+|+.|.= ++|...|..... +.+.+-+ .. ....|.+|.+.+.++..+++||.||=
T Consensus 1 MkILvtGa~GqLG~~l~~~l~~~~~---~~~~~~~-~~-----~~~~Dit~~~~v~~~~~~~~Pd~IIN 60 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGN---LIALDVH-ST-----DYCGDFSNPEGVAETVRKIRPDVIVN 60 (299)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEECC-CC-----CCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 9799989999789999998665098---8998526-30-----01367899999999999659999998
No 90
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.23 E-value=0.13 Score=31.67 Aligned_cols=112 Identities=21% Similarity=0.163 Sum_probs=64.6
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEEEECCCHHHHH-----CCEEEECCCCCHHHHHHHHHHHCCCEEEE-C---C
Q ss_conf 958998865889-999999985899678999549835751-----17055128789899999998718979999-7---9
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELWSIPGNPGIAQ-----HAQCVAIDIQNHSAIIHFCQEKHIDLVVV-G---P 70 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~~~pgN~g~~~-----~~~~~~i~~~d~~~i~~~a~~~~iDlviv-g---p 70 (424)
|+|||+|.-|.= .+++.+|.+.+. .|-|+--||.-+. .++.+..|..|.+.+.... ..+|.||- + |
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~G~--~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al--~GvdaVi~~~~~~~ 76 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALDEGY--QVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPAL--EGITAIIDASTSRP 76 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHH--CCCCEEEEECCCCC
T ss_conf 9799989985899999999996889--0899957867632342159679994278877899996--59967999456677
Q ss_pred CHHH---------HHHHHHHHHHCCCCEE------ECCHH-HHHHHHCCHHHHHHHHHHHHH
Q ss_conf 5578---------7489989860588067------01066-655520102357888765310
Q gi|254780206|r 71 ELPL---------VNGISDALNAAGFKVF------GPSQR-AAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 71 E~pL---------~~gi~d~l~~~gi~v~------Gp~~~-aa~le~sK~~~K~~l~~~gIP 116 (424)
..+. ...+.++.+++|++-| |..+. ...+...|.-.-+.+++.|+|
T Consensus 77 ~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~~~~~~p~~~~K~~~E~~L~~Sgl~ 138 (319)
T CHL00194 77 SDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAEQYPQVPLMKIKSDIEEKLKQSGIN 138 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 88620889889889999999998499889996135666688756778799999999867998
No 91
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.17 E-value=0.063 Score=33.92 Aligned_cols=142 Identities=20% Similarity=0.181 Sum_probs=85.4
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCC-CCEEEEECCCHHHH-HCCEEEECC--CCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 958998865889-999999985899-67899954983575-117055128--7898999999987189799997955787
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPL-LSELWSIPGNPGIA-QHAQCVAID--IQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~-~~~v~~~pgN~g~~-~~~~~~~i~--~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
|||.|||.|+.- .+....+++.+. ..-+.++.-|+..+ ..++...+. ..|.+++ .....||+|+|.....+=
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~l---l~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEEL---LADPDIDAVYIATPNALH 80 (342)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHH---HCCCCCCEEEEECCCHHH
T ss_conf 27999898767888889999738874699999649989999999981997452999999---459999889996980677
Q ss_pred HHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHH--CCCCEEEEEECC
Q ss_conf 489989860588067010666555201023578887653101111---22344011111210--124202563046
Q gi|254780206|r 76 NGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY---QHFSDPMKAKQYVQ--NKSMPIVVKADG 146 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~---~~~~~~~ea~~~~~--~~g~PvVVKp~~ 146 (424)
..++-..-++|..||+=..-+.-++.-+.. .++.+++|+...-. +.......+++.++ .+|.+..++...
T Consensus 81 ~~~a~~AL~aGkhVl~EKPla~t~~ea~~l-~~~a~~~g~~l~v~~~~Rf~p~~~~~k~li~~g~iG~i~~~~~~~ 155 (342)
T COG0673 81 AELALAALEAGKHVLCEKPLALTLEEAEEL-VELARKAGVKLMVGFNRRFDPAVQALKELIDSGALGEVVSVQASF 155 (342)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHH-HHHHHHCCCEEEEEEHHHCCHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 999999997799699928998999999999-999997599499988465498999999998659874159999971
No 92
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=96.02 E-value=0.015 Score=38.52 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=44.6
Q ss_pred EEEEECCCH---HHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 589988658---899999999858996789995498357511705512878989999999871897999
Q gi|254780206|r 2 RVLLIGSGG---REHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 2 kILviGsGg---rEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
||||+|++| || |...|.+.. ..+.|..-+.-.....+|+.+|+.|.+.+.+..++.+||.||
T Consensus 1 rilitGa~GQlG~~--L~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vv 65 (317)
T TIGR01214 1 RILITGANGQLGRE--LVQQLSKPG--RVVVALTRSTRLKLAARWSQLDLTDPEALEELLRAIRPDAVV 65 (317)
T ss_pred CEEEECCCCHHHHH--HHHHCCCCC--CEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEE
T ss_conf 97887387567999--999707888--278643687776113365440622468899999852875376
No 93
>pfam03133 TTL Tubulin-tyrosine ligase family. Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypep
Probab=95.90 E-value=0.0098 Score=39.76 Aligned_cols=41 Identities=17% Similarity=0.472 Sum_probs=31.4
Q ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 20256304653430002323567788878875144531777887752
Q gi|254780206|r 138 MPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE 184 (424)
Q Consensus 138 ~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~ 184 (424)
--.++||+..+.|+|+.+..+.++...... .++.||++||+
T Consensus 67 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~------~~~~VvQkYI~ 107 (291)
T pfam03133 67 NTWIVKPSASARGRGIRITNDLSQILKQIQ------SRPLVVQKYIE 107 (291)
T ss_pred CEEEEEECCCCCCCCEEEECCHHHHHHHHC------CCCEEEEECCC
T ss_conf 769991177689899698379999766523------79889752057
No 94
>PRK11579 putative oxidoreductase; Provisional
Probab=95.73 E-value=0.16 Score=30.93 Aligned_cols=137 Identities=19% Similarity=0.211 Sum_probs=77.0
Q ss_pred CEEEEECCC--HHH-HHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEEC-CCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 958998865--889-9999999858996789995498357511705512-878989999999871897999979557874
Q gi|254780206|r 1 MRVLLIGSG--GRE-HALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAI-DIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 1 MkILviGsG--grE-hAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i-~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
|||.|||-| |+. |+ ..+.+.+.+.-+.++..|+.-.. ++...+ -..|.+++ ..+..||.|+|.....+-.
T Consensus 5 irvgiiG~G~~~~~~h~--~~~~~~~~~~l~av~d~~~~~~~-a~~~~~~~~~~~~~l---l~~~~id~V~i~tp~~~H~ 78 (346)
T PRK11579 5 IRVGLIGYGYASKTFHA--PLIAGTPGLELAAVSSSDETKVK-ADWPTVTVVSEPKHL---FNDPNIDLIVIPTPNDTHF 78 (346)
T ss_pred CEEEEECCCHHHHHHHH--HHHHCCCCEEEEEEECCCHHHHH-CCCCCCCEECCHHHH---HCCCCCCEEEECCCCHHHH
T ss_conf 75999936299999999--99962999199999798999995-025899538999999---4599999999979967899
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CC-CCCHHHHHHHH--CCCCEEEEEE
Q ss_conf 899898605880670106665552010235788876531011112--23-44011111210--1242025630
Q gi|254780206|r 77 GISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ--HF-SDPMKAKQYVQ--NKSMPIVVKA 144 (424)
Q Consensus 77 gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~--~~-~~~~ea~~~~~--~~g~PvVVKp 144 (424)
-++-..-++|..||.=..-+.-++.-+.. -+..++.|++..-+. .| .....+++.++ .+|-+.-+..
T Consensus 79 ~~~~~al~aGkhv~~EKP~a~~~~~a~~l-~~~a~~~g~~l~v~~~~R~~~~~~~~~~~i~~G~lG~i~~~~~ 150 (346)
T PRK11579 79 PLAKAALEAGKHVVVDKPFTVTLSQAREL-DALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFES 150 (346)
T ss_pred HHHHHHHHCCCCEEECCCCCCCHHHHHHH-HHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999998799489538767879999999-9999872967999655318989999877875799785389998
No 95
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=95.66 E-value=0.22 Score=29.94 Aligned_cols=120 Identities=21% Similarity=0.226 Sum_probs=59.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHH---
Q ss_conf 95899886588999999998589967899954983575117055128789899999998718979999795578748---
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNG--- 77 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~g--- 77 (424)
.||||+|+=+=-..|+..|...+.+..+...-..+.. .......--..|.+.+.+|+++++|++||=. .-|.+.-
T Consensus 2 ~~IlilgGT~Egr~la~~L~~~~~~~s~ag~~~~~~~-~~~~i~~G~~~~~~~l~~~l~~~~i~~VIDA-THPfA~~is~ 79 (241)
T PRK08057 2 PRILLLGGTSEARALARALAPDDTVTSLAGRTLKPAD-LPGPVRVGGFGGAEGLAAYLREEGIDLVVDA-THPYAAQISA 79 (241)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCEEEEEEEECCCCCC-CCCCEEECCCCCHHHHHHHHHHCCCCEEEEC-CCCCHHHHHH
T ss_conf 6599996708999999997489989998530255656-8876798888999999999996799899989-9970899999
Q ss_pred -HHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf -998986058806701066655520102357888765310111122344011111210124
Q gi|254780206|r 78 -ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKS 137 (424)
Q Consensus 78 -i~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g 137 (424)
..++.++.|||++ |+|+... .--+...+..++|.++|.+.+...+
T Consensus 80 ~a~~a~~~~~ipyl-------R~eRp~~--------~~~~~d~~~~v~s~~ea~~~l~~~~ 125 (241)
T PRK08057 80 NAAAACRALGIPYL-------RLERPPW--------QPQPGDDWIEVDDIAAAAEALAPFG 125 (241)
T ss_pred HHHHHHHHHCCEEE-------EEECCCC--------CCCCCCCEEEECCHHHHHHHHHHCC
T ss_conf 99999998697079-------9967865--------6788877899799999999876438
No 96
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=95.54 E-value=0.25 Score=29.64 Aligned_cols=88 Identities=23% Similarity=0.218 Sum_probs=63.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHH-HH--------CCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 89988658899999999858996789995498357-51--------1705512878989999999871897999979557
Q gi|254780206|r 3 VLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGI-AQ--------HAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELP 73 (424)
Q Consensus 3 ILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~-~~--------~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~p 73 (424)
|||||+|.--.++++.|.++..+.+|.++.-|..- .. -.+.+.+|..|.+++.+++++. |+||-.--..
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~--diVv~~~p~~ 78 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSLEKAQALAAPKLGLRFIAIAVDADNYEALAALLKEG--DLVINLAPPF 78 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCC--CEEEECCCHH
T ss_conf 98989778799999999728998869999898899898775236985389995778999999987128--9999998434
Q ss_pred HHHHHHHHHHHCCCCEEEC
Q ss_conf 8748998986058806701
Q gi|254780206|r 74 LVNGISDALNAAGFKVFGP 92 (424)
Q Consensus 74 L~~gi~d~l~~~gi~v~Gp 92 (424)
+...++..+-+.|..++-.
T Consensus 79 ~~~~i~~~c~~~g~~yvd~ 97 (384)
T pfam03435 79 LSLTVLKACIETGVHYVDT 97 (384)
T ss_pred HCHHHHHHHHHCCCCEEEC
T ss_conf 1699999999739975753
No 97
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=95.46 E-value=0.11 Score=32.25 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=55.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEE-EECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 589988658899999999858996789995498357511705-5128789899999998718979999795578748998
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQC-VAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISD 80 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~-~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d 80 (424)
||+|+|-|+..+|+..-..++.....+-+++=||.. ..+. ..+.+. +.+.++++++++|.+++.-..+-+..+++
T Consensus 5 ~v~liG~g~lG~al~~~~~~~~~~~i~~vfdv~p~~--~G~~i~gipv~--~~l~~~~~~~~idiaii~VP~~~a~~~~~ 80 (96)
T pfam02629 5 KVAVIGASGLGIQGLYHFIQLLGYGIKMVFGVNPRK--GGTEVGGIPVY--KSVDELEEDTGVDVAVITVPAPFAQEAID 80 (96)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCC--CCCEECCEEEE--CCHHHHHHCCCCCEEEEEECHHHHHHHHH
T ss_conf 499999898278887768877148618998069242--77588899843--10877741558878999947899899999
Q ss_pred HHHHCCCCEE
Q ss_conf 9860588067
Q gi|254780206|r 81 ALNAAGFKVF 90 (424)
Q Consensus 81 ~l~~~gi~v~ 90 (424)
.+-+.|++.+
T Consensus 81 ~~v~~GIk~i 90 (96)
T pfam02629 81 ELVDAGIKGI 90 (96)
T ss_pred HHHHCCCCEE
T ss_conf 9998699899
No 98
>KOG1447 consensus
Probab=95.44 E-value=0.016 Score=38.24 Aligned_cols=180 Identities=20% Similarity=0.214 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE-EEEEECCCCCCCC-----------CCCHHHHHHHHHHHHHHHCC
Q ss_conf 35788876531011112234401111121012420-2563046534300-----------02323567788878875144
Q gi|254780206|r 105 FAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP-IVVKADGLCAGKG-----------VVVAATVDEATSAIDRCFQQ 172 (424)
Q Consensus 105 ~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P-vVVKp~~~agGkG-----------V~i~~~~~e~~~~~~~~~~~ 172 (424)
-+|++|.++|+..-+|.+.++..++.+...+++.| +|||+.-++|||| |.+..+.+++.+..+...+.
T Consensus 26 QSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~qMIG~ 105 (412)
T KOG1447 26 QSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQMIGY 105 (412)
T ss_pred HHHHHHHHCCEEEEEEEEECCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCEECCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 66788986490589999706707789999854992237764431067655424477654068744874999999998745
Q ss_pred C-------CH-----HHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--EE---ECCCCCCC
Q ss_conf 5-------31-----777887752-0575234421577631035200011135665444443443--00---00123443
Q gi|254780206|r 173 I-------NS-----TVIIEEYLE-GFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMG--AC---SPALGMSQ 234 (424)
Q Consensus 173 ~-------~~-----~VliEefl~-G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMG--a~---~p~~~~~~ 234 (424)
. .+ +|.|-|-++ -.|--+-.+.|.+.-=|.. .+...|||- ++ +|-..+
T Consensus 106 rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVl------------vaSP~GGmDIEaVAe~tPE~If-- 171 (412)
T KOG1447 106 RLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVL------------VASPQGGMDIEAVAESTPELIF-- 171 (412)
T ss_pred HHHHCCCCCCCEEEEEEEEEECCCCCHHEEEEEEECCCCCCCEE------------EECCCCCCCHHHHHHHCHHHHC--
T ss_conf 33204488556265558873003611240014355145689779------------8569988659998653957651--
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEE--E-------ECCEEEEEEEEEEECCCCCEEEEECCCCCC
Q ss_conf 2220100000899999862046235664454489--8-------557048999886514775104433265441
Q gi|254780206|r 235 ELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLM--I-------TEQGPYLIEYNVRFGDPECQAMMMRLESDI 299 (424)
Q Consensus 235 ~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m--~-------t~~gp~viE~N~R~GDPE~q~ilp~L~~dl 299 (424)
...-+|.+.|-+-+.-.+. +.+.|.|.|-.+.- + ..-...-+|+|+---.||.|++.---+-+|
T Consensus 172 k~piDI~~gi~esq~l~~A-k~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NF 244 (412)
T KOG1447 172 KEPIDIFEGIKESQALRMA-KNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINF 244 (412)
T ss_pred CCCCHHCCCCCHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEEECCC
T ss_conf 4462013688668899999-844666707778999999999999651212787325665898608998501067
No 99
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=95.20 E-value=0.31 Score=28.89 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=51.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCC-EEE-EECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEEC-C--CHHHHH
Q ss_conf 5899886588999999998589967-899-9549835751170551287898999999987189799997-9--557874
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLS-ELW-SIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVG-P--ELPLVN 76 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~-~v~-~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivg-p--E~pL~~ 76 (424)
+|||||+|.....++..+.+.+... ++. +.+.++.-......++ -..+.+++.++++++++|-|++. | +.....
T Consensus 130 rvLIIG~g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~~~~~~p-vlg~~~~l~~~i~~~~ideViia~~~~~~~~~~ 208 (451)
T TIGR03023 130 RVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVP-VLGKLDDLEELIREGEVDEVYIALPLAAEKRIL 208 (451)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 4999968689999999997194368489999838854444457997-369899999999967998899954835568999
Q ss_pred HHHHHHHHCCCCEE
Q ss_conf 89989860588067
Q gi|254780206|r 77 GISDALNAAGFKVF 90 (424)
Q Consensus 77 gi~d~l~~~gi~v~ 90 (424)
.+.+.++..|+.+.
T Consensus 209 ~li~~~~~~~v~v~ 222 (451)
T TIGR03023 209 ELLDALEDLTVDVR 222 (451)
T ss_pred HHHHHHHHCCCEEE
T ss_conf 99999864598799
No 100
>TIGR01435 glu_cys_lig_rel putative glutamate--cysteine ligase/putative amino acid ligase; InterPro: IPR006335 This entry represents a family with an N-terminal region similar to proteobacterial glutamate-cysteine ligase (gamma-glutamylcysteine synthetase). The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria, and (shown by PSI-BLAST) to D-alanine-D-alanine ligases. Cyanophycin is a storage molecule composed of arginine, aspartic acid, and some glutamic acid. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced , and in proteobacterium Pasteurella multocida.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process.
Probab=95.06 E-value=0.037 Score=35.58 Aligned_cols=99 Identities=26% Similarity=0.334 Sum_probs=77.6
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEE-EEEECCCCCCCCCCCHH----HHHHHHHHHHHHHCCC
Q ss_conf 520102357888765310111122344011111210124202-56304653430002323----5677888788751445
Q gi|254780206|r 99 LESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPI-VVKADGLCAGKGVVVAA----TVDEATSAIDRCFQQI 173 (424)
Q Consensus 99 le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~Pv-VVKp~~~agGkGV~i~~----~~~e~~~~~~~~~~~~ 173 (424)
+..+|..+|.++.++|...|....|++...+.+....+.-.. |+||....-|-|..+.. +.++..+++..+|..
T Consensus 487 ~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~g~~~~~~~~~~~~d~~~~~~~~~~~- 565 (754)
T TIGR01435 487 LLENKVVTKKVLAEAGFNVPGGDEFSSLALALEAFLLFENKAFVVKPKSTNYGLGTTIFKEGFTNLEDFAEALRNAFKE- 565 (754)
T ss_pred EECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHH-
T ss_conf 0011257788887604557665304678888888876413300332354444331234430221056789999876420-
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 3177788775205752344215776
Q gi|254780206|r 174 NSTVIIEEYLEGFEVSFFALCDGKT 198 (424)
Q Consensus 174 ~~~VliEefl~G~E~Sv~~i~dG~~ 198 (424)
+..+++++|+.|.|+.++.+-|...
T Consensus 566 d~~~~~~~~~~g~~~~~~~~~~~~~ 590 (754)
T TIGR01435 566 DSEVLVEEFLPGTEYRFFLLGDEVE 590 (754)
T ss_pred HHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf 0134333311576216776354156
No 101
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=94.93 E-value=0.37 Score=28.37 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=54.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCC-EE--EEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECC---CHHHH
Q ss_conf 5899886588999999998589967-89--995498357511705512878989999999871897999979---55787
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLS-EL--WSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGP---ELPLV 75 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~-~v--~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgp---E~pL~ 75 (424)
+|||||+|.+-..++..+.+.+... .+ ++.+.+ ........++ -.-+.+++.++++++++|-|++.. +.+..
T Consensus 127 rvlIIG~g~~~~~l~~~l~~~~~~g~~vvG~~dd~~-~~~~~~~~~p-~lg~~~~l~~~i~~~~ideViIa~p~~~~~~~ 204 (445)
T TIGR03025 127 RVLIVGTGELAEELAAALSRNPDLGYRVVGFVDDRP-EDRVEVAGLP-VLGKLDDLVELVRAHRVDEVIIALPLSEEARI 204 (445)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCC-CCCCCCCCCC-CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 399990848999999999828468848999977875-4445567886-01889999999997699889996586776899
Q ss_pred HHHHHHHHHCCCCEEE
Q ss_conf 4899898605880670
Q gi|254780206|r 76 NGISDALNAAGFKVFG 91 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~G 91 (424)
..+.+.++..|+.+.-
T Consensus 205 ~~~l~~~~~~~v~v~~ 220 (445)
T TIGR03025 205 LELLLQLSDLGVDVRL 220 (445)
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 9999998755978999
No 102
>KOG3895 consensus
Probab=94.72 E-value=0.15 Score=31.17 Aligned_cols=221 Identities=15% Similarity=0.211 Sum_probs=108.1
Q ss_pred HHHHHCCCEEEECCCHHHHH------HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHH----HH---HHCCCCCCC
Q ss_conf 99871897999979557874------899898605880670106665552010235788876----53---101111223
Q gi|254780206|r 57 FCQEKHIDLVVVGPELPLVN------GISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTK----YG---IPTATYQHF 123 (424)
Q Consensus 57 ~a~~~~iDlvivgpE~pL~~------gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~----~g---IPt~~~~~~ 123 (424)
.++..++|+|+++.-+.-++ -++-.|..+|||.+- +-.++--.-||-|-+.-|.+ .| +|-..-..+
T Consensus 150 v~RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~vN-Sl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~y 228 (488)
T KOG3895 150 VVRSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSVN-SLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFY 228 (488)
T ss_pred EEEECCCCEEEECCCCHHHCCCCCHHHHHHHHHHCCCCCCC-HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf 54312677788705301010131068999988763786420-26789886145689999999987518544554400106
Q ss_pred CCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCCEEEECCCCCCCCC
Q ss_conf 440111112101242025630465343000232356778887887514453177788775205-7523442157763103
Q gi|254780206|r 124 SDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGF-EVSFFALCDGKTAIPF 202 (424)
Q Consensus 124 ~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~-E~Sv~~i~dG~~~~~l 202 (424)
-+ -+..+..-.||+|||-..-.+|.|-..++|.+|+.+.- ....-....+-.|-|++.. .+-++-| |.+|...
T Consensus 229 Pn---HK~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~-svval~~Tyat~epFiDaKYDiriQKI--G~nYKay 302 (488)
T KOG3895 229 PN---HKEMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIA-SVVALTKTYATAEPFIDAKYDIRIQKI--GHNYKAY 302 (488)
T ss_pred CC---CHHHCCCCCCCEEEEECCCCCCCCEEEECCHHHHHHHH-HHHHHHHHHHCCCCCCCCCCEEEHHHH--HHHHHHH
T ss_conf 87---44221488776799825433565325523415567699-999988623200234343220015654--0468888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEE-ECCHHHHHHHHHHHCCCEEEEE---EEEEEEEECCE-EEEE
Q ss_conf 52000111356654444434430000123443222010-0000899999862046235664---45448985570-4899
Q gi|254780206|r 203 TTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTV-IQKIILPTIEGMQKEQNPFQGV---LFAGLMITEQG-PYLI 277 (424)
Q Consensus 203 ~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i-~~~i~~~~~~~l~~~~~~y~G~---l~~~~m~t~~g-p~vi 277 (424)
.- +--.++---|||. ...++| +.+--+.++++.-.. .|- .-+.....++| -||+
T Consensus 303 mR-----tsIsgnWKtNtGS------------amLEQIamseRyklwvdtcse~----fGgldICav~alhsKdGrd~i~ 361 (488)
T KOG3895 303 MR-----TSISGNWKTNTGS------------AMLEQIAMSERYKLWVDTCSEM----FGGLDICAVKALHSKDGRDYII 361 (488)
T ss_pred HH-----HHHCCCCCCCCHH------------HHHHHHHHHHHHHHHHHHHHHH----CCCCCEEEEEEEECCCCHHHEE
T ss_conf 66-----5312675457208------------9999998778899999989976----2883246654210565502324
Q ss_pred EEEEEECCCCCEEEEECCCC----C---CHHHHHHHHHCCCCC
Q ss_conf 98865147751044332654----4---115666542013333
Q gi|254780206|r 278 EYNVRFGDPECQAMMMRLES----D---ILEILNSCVHGNLHN 313 (424)
Q Consensus 278 E~N~R~GDPE~q~ilp~L~~----d---l~~il~~~~~g~L~~ 313 (424)
|+|- ..||++.. | ..+++.+-....|..
T Consensus 362 eV~d--------~smpliGeh~eeDrql~~~Lvvskmaq~l~~ 396 (488)
T KOG3895 362 EVMD--------SSMPLIGEHQEEDRQLISELVVSKMAQLLTR 396 (488)
T ss_pred EECC--------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 3123--------5432224224678999999999976530589
No 103
>PRK07578 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.27 Score=29.31 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=39.2
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHH-CCCEEE
Q ss_conf 958998865-8899999999858996789995498357511705512878989999999871-897999
Q gi|254780206|r 1 MRVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEK-HIDLVV 67 (424)
Q Consensus 1 MkILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~-~iDlvi 67 (424)
|||||.|.. |--.|++.+|.+.. +|+.+-.+.+ .+..|.+|.+.+.++.++. ++|.+|
T Consensus 1 MrVlVTGas~GIG~aia~~la~~~---~vv~~~r~~~------~~~~Dvtd~~~v~~~~~~~G~iD~lV 60 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSARH---EVITAGRSSG------DVQVDITDPASIRALFEKVGKVDAVV 60 (199)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCC---CEEEEECCCC------CEEEECCCHHHHHHHHHHHCCCCEEE
T ss_conf 979999987489999999996799---9899836867------75685889999999999629998999
No 104
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.39 E-value=0.41 Score=28.00 Aligned_cols=42 Identities=14% Similarity=0.330 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 878989999999871897999979557874899898605880
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFK 88 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~ 88 (424)
.+.|.+.+.++++++.+|.++..-.+--+..++|.|.++|++
T Consensus 131 ~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVk 172 (211)
T COG2344 131 PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADRLVKAGVK 172 (211)
T ss_pred EEECHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 455268888898861761899973489899999999983873
No 105
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=94.17 E-value=0.054 Score=34.38 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=66.5
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHCCCCEEEEEECCCCCCCCCCCHHH----HHHHHHHHHHHHCCC
Q ss_conf 52010235788876531011112234401-1111210124202563046534300023235----677888788751445
Q gi|254780206|r 99 LESSKSFAKKFCTKYGIPTATYQHFSDPM-KAKQYVQNKSMPIVVKADGLCAGKGVVVAAT----VDEATSAIDRCFQQI 173 (424)
Q Consensus 99 le~sK~~~K~~l~~~gIPt~~~~~~~~~~-ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~----~~e~~~~~~~~~~~~ 173 (424)
+..+|..+|..+.+.+++.|.-.-+.-.+ ....+++-+++|+|+||...+++.++.+... .+.+..+...++...
T Consensus 48 ~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~ 127 (317)
T COG1181 48 WMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRD 127 (317)
T ss_pred EEECCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 78503101222026987787155888887069999997099876076445332350999988998678651235675334
Q ss_pred C-HHHHHHHHHHCCCCCEEEECC
Q ss_conf 3-177788775205752344215
Q gi|254780206|r 174 N-STVIIEEYLEGFEVSFFALCD 195 (424)
Q Consensus 174 ~-~~VliEefl~G~E~Sv~~i~d 195 (424)
. ..+++|++..|.++-+++.-+
T Consensus 128 ~~~~~~~e~~~~~l~~p~~Vkp~ 150 (317)
T COG1181 128 EYSSVIVEEVEEGLGFPLFVKPA 150 (317)
T ss_pred CCHHHHHHHHHCCCCCCEEEECC
T ss_conf 52047888774146887899858
No 106
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=93.75 E-value=0.6 Score=26.83 Aligned_cols=146 Identities=14% Similarity=0.239 Sum_probs=80.0
Q ss_pred HHHHHHHHHHCCC-EEEECCCHHHHHHHHHHHHHCC-CCEEE-CCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 9999999871897-9999795578748998986058-80670-1066655520102357888765310111122344011
Q gi|254780206|r 52 SAIIHFCQEKHID-LVVVGPELPLVNGISDALNAAG-FKVFG-PSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMK 128 (424)
Q Consensus 52 ~~i~~~a~~~~iD-lvivgpE~pL~~gi~d~l~~~g-i~v~G-p~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~e 128 (424)
+.-++.-|++.|| |||+|-+=.+. | +..|.+.| +||+| |.- |--|=.++ ++ --|+=|+==.+++..+.
T Consensus 81 ~kA~~nLK~~GI~~LVViGGDGSy~-G-A~~L~~~gg~~~iGlPGT----IDNDI~~T-Dy--TIGfDTALNTi~~avdK 151 (302)
T TIGR02482 81 EKAVENLKKLGIEALVVIGGDGSYT-G-AQKLYEEGGIPVIGLPGT----IDNDIQGT-DY--TIGFDTALNTILDAVDK 151 (302)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHH-H-HHHHHHHCCCCEEEECCC----CCCCCCCC-CH--HHHHHHHHHHHHHHHHH
T ss_conf 9999998874886689986844068-8-999997179847874585----02566643-22--55666674379987765
Q ss_pred HHHHHHCCCCEEEEEEC-----------CCCCCC-CCCCH---HHHHHHHHHHHHHHCC-CCHH--HHHHHHHHCCCCCE
Q ss_conf 11121012420256304-----------653430-00232---3567788878875144-5317--77887752057523
Q gi|254780206|r 129 AKQYVQNKSMPIVVKAD-----------GLCAGK-GVVVA---ATVDEATSAIDRCFQQ-INST--VIIEEYLEGFEVSF 190 (424)
Q Consensus 129 a~~~~~~~g~PvVVKp~-----------~~agGk-GV~i~---~~~~e~~~~~~~~~~~-~~~~--VliEefl~G~E~Sv 190 (424)
+++-+.++..-+||=== ++|+|- ...+. .+.+|+.+.+.+-+.. ..+. +++|+++.|.=+.+
T Consensus 152 iRDTA~SHeR~f~iEVMGR~aGdLAl~aaiAtGAE~i~~pE~~~~~~~l~~~~k~~~~~~k~~SiI~~ae~~~~g~~~e~ 231 (302)
T TIGR02482 152 IRDTATSHERAFVIEVMGRHAGDLALYAAIATGAEIIIIPEFDLDIEELIERIKEQREAGKKNSIIIVAEGNILGNAKEV 231 (302)
T ss_pred HHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHH
T ss_conf 42130121656899950785578999998864010211588888989999999999860899618999951014776788
Q ss_pred ----E-EECC-CCCCCCCCCCC
Q ss_conf ----4-4215-77631035200
Q gi|254780206|r 191 ----F-ALCD-GKTAIPFTTAR 206 (424)
Q Consensus 191 ----~-~i~d-G~~~~~l~~~~ 206 (424)
. =-+. -.++.+|..+|
T Consensus 232 A~~iene~~g~~tR~~vLGH~Q 253 (302)
T TIGR02482 232 AKKIENEKTGIETRVTVLGHTQ 253 (302)
T ss_pred HHHHHCCCCCCEEEEEEEEEEC
T ss_conf 8763047898428999975664
No 107
>pfam06849 DUF1246 Protein of unknown function (DUF1246). This family represents the N-terminus of a number of hypothetical archaeal proteins of unknown function.
Probab=93.75 E-value=0.62 Score=26.71 Aligned_cols=112 Identities=14% Similarity=0.200 Sum_probs=61.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHH---CCCEEEECCCHHHH
Q ss_conf 899886588999999998589967899954983575----11705512878989999999871---89799997955787
Q gi|254780206|r 3 VLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEK---HIDLVVVGPELPLV 75 (424)
Q Consensus 3 ILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~---~iDlvivgpE~pL~ 75 (424)
|.++||-.-=+ |..-.++.+.-+-++|-.|...+- ..++.+.+ .++.++++-..+. +-+.++| |--.++
T Consensus 1 I~tl~SHSALq-Il~GAK~EGF~Tv~vc~~gr~~~Y~~f~~~De~iv~--d~f~di~~~~~q~~L~~~N~I~I-PhgSfv 76 (124)
T pfam06849 1 IATLGSHSALQ-ILDGAKDEGFRTVAVCQKGREKFYRRFPFVDEFIVV--DKFKDILDEEVQQKLRENNAIFI-PHGSFV 76 (124)
T ss_pred CCCCCCCHHHH-HHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEEEE--CCHHHHHHHHHHHHHHHCCEEEE-CCCCEE
T ss_conf 93121303989-972388739957899817975213326867379995--65899872999999998897997-488846
Q ss_pred H--HHHHHHH-HCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 4--8998986-0588067010666555201023578887653101111
Q gi|254780206|r 76 N--GISDALN-AAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120 (424)
Q Consensus 76 ~--gi~d~l~-~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~ 120 (424)
+ |. |.++ +..+|+|| ++..-+.|+++..-+++|+++|||.|+-
T Consensus 77 ~Y~G~-~~ie~~~~VP~FG-NR~lLrwEseR~~~~~lLe~Agi~~Pk~ 122 (124)
T pfam06849 77 AYVGY-DRVENEFKVPIFG-NRNLLRWESERDKERKLLEKAGIRYPKK 122 (124)
T ss_pred EEECH-HHHHHCCCCCEEC-CHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 76558-9986027887004-7888887653677999999769999835
No 108
>pfam11379 DUF3182 Protein of unknown function (DUF3182). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.59 E-value=0.044 Score=35.04 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=63.4
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC--CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCHH
Q ss_conf 010235788876531011112234401111121012--420256304653430002323567788878875144--5317
Q gi|254780206|r 101 SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNK--SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ--INST 176 (424)
Q Consensus 101 ~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~--g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~--~~~~ 176 (424)
||..|+. +..=-+-+..++-|.++|..+...+ +-|+=+||...+||+|..++.+.+++..++...-.. ....
T Consensus 102 Ws~~F~~----~v~~~vLpG~tvFs~~DAr~Aa~~Ll~~G~VRlK~~~a~gG~GQ~vv~d~~~Le~~L~a~~~~~l~~~G 177 (355)
T pfam11379 102 WSRAFAA----RVRDAVLPGYTVFSLEDARDAAARLLKGGPVRLKPPRACGGRGQQVVADADALDAALAALDDRELAAHG 177 (355)
T ss_pred CCHHHHH----HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEECCHHHHHHHHHCCCHHHHHHCC
T ss_conf 4799999----876210387322267889999999853797255056223788855743899999998727988898668
Q ss_pred HHHHHHHHCC-CCCE-EEECCCCC
Q ss_conf 7788775205-7523-44215776
Q gi|254780206|r 177 VIIEEYLEGF-EVSF-FALCDGKT 198 (424)
Q Consensus 177 VliEefl~G~-E~Sv-~~i~dG~~ 198 (424)
+++||-|+.+ -+|| ++.++|-.
T Consensus 178 lVLE~~L~~~~TySVGqv~v~g~~ 201 (355)
T pfam11379 178 LVLEEDLDQPTTYSVGQVRVAGLL 201 (355)
T ss_pred EEEECCCCCCCEEEEEEEEECCEE
T ss_conf 687402577722555559998899
No 109
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.54 E-value=0.4 Score=28.15 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=51.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHC-C-EEE-ECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 589988658899999999858996789995498357511-7-055-1287898999999987189799997955787489
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQH-A-QCV-AIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~-~-~~~-~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi 78 (424)
||||+|-|----|++.-|.+... +|++...++..... . ... .+...+... .+ ...|++|+.|-.|...-.
T Consensus 14 ~V~V~GlG~sG~a~a~~L~~~G~--~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~d~vV~SPGI~~~~p~ 86 (487)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGA--RPTVCDDDPDALRPHAERGVATVSSSDAVQ--QI---ADYALVVTSPGFPPTAPV 86 (487)
T ss_pred EEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCHHHHHHHHCCCCEECCCCCHH--HH---CCCCEEEECCCCCCCCHH
T ss_conf 89999156838999999997869--799998982577999865994863762265--64---677889989957998999
Q ss_pred HHHHHHCCCCEEECCHHHHHH
Q ss_conf 989860588067010666555
Q gi|254780206|r 79 SDALNAAGFKVFGPSQRAAKL 99 (424)
Q Consensus 79 ~d~l~~~gi~v~Gp~~~aa~l 99 (424)
....++.|+|+++=...+.++
T Consensus 87 l~~a~~~gi~i~~eieL~~~~ 107 (487)
T PRK03369 87 LAAAAAAGVPIWGDVELAWRL 107 (487)
T ss_pred HHHHHHCCCCEEEHHHHHHHH
T ss_conf 999998899076599999998
No 110
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.52 E-value=0.59 Score=26.90 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=50.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCC--H-HHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf 9589988658899999999858996789995498--3-575117055128789899999998718979999795578748
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGN--P-GIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNG 77 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN--~-g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~g 77 (424)
=||||+|-|----|.+..|.+...-..|++...+ + ....+.+.+.+...... .++. .+.|+||+.|-.|+..-
T Consensus 8 KkvlV~GlG~sG~s~a~~L~~~~~~~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~--~~~l--~~~d~vV~SPGI~~~~p 83 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKTQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWN--QDWL--AEADLVVTNPGIALATP 83 (438)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCC--HHHH--CCCCEEEECCCCCCCCH
T ss_conf 7499990678589999999966998469996398893688762069769727889--6783--68999998997699898
Q ss_pred HHHHHHHCCCCEEECCHHHHH
Q ss_conf 998986058806701066655
Q gi|254780206|r 78 ISDALNAAGFKVFGPSQRAAK 98 (424)
Q Consensus 78 i~d~l~~~gi~v~Gp~~~aa~ 98 (424)
......+.|+|+++--.-.++
T Consensus 84 ~~~~a~~~~i~i~~eiel~~~ 104 (438)
T PRK04663 84 EIQPVLAKGIPVVGDIELFAW 104 (438)
T ss_pred HHHHHHHCCCCEECHHHHHHH
T ss_conf 999999869937038899976
No 111
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.50 E-value=0.4 Score=28.14 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=51.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHH-CCEE---EECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf 58998865889999999985899678999549835751-1705---5128789899999998718979999795578748
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQ-HAQC---VAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNG 77 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~-~~~~---~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~g 77 (424)
||||+|-|.---|++.-|.+... +|++...++.... ..+. ..+...+... . -...|++|+.|-.|...-
T Consensus 19 kvlV~GlG~SG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~d~vV~SPGI~~~~p 91 (476)
T PRK00141 19 RVLVAGAGVSGLGIAKMLSELGC--DVVVADDNETQRHMLIEVVDVADISTAQASD---A--LDSYSIVVTSPGWRPDSP 91 (476)
T ss_pred CEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHCCCCEECCCCHHH---H--HCCCCEEEECCCCCCCCH
T ss_conf 88999227889999999997899--7999989987035788747985651553065---6--468999998997899799
Q ss_pred HHHHHHHCCCCEEECCHHHHHH
Q ss_conf 9989860588067010666555
Q gi|254780206|r 78 ISDALNAAGFKVFGPSQRAAKL 99 (424)
Q Consensus 78 i~d~l~~~gi~v~Gp~~~aa~l 99 (424)
+.....+.|+|+++--..+.++
T Consensus 92 ~l~~a~~~gi~viseiel~~~~ 113 (476)
T PRK00141 92 LLVDAQSAGLEVIGDVELAWRL 113 (476)
T ss_pred HHHHHHHCCCCEEEHHHHHHHH
T ss_conf 9999998799577199999986
No 112
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=93.43 E-value=0.72 Score=26.26 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=43.3
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEEEE-----CCCHHH-HHC--C---EEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 958998865889-9999999858996789995-----498357-511--7---05512878989999999871897999
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELWSI-----PGNPGI-AQH--A---QCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~~~-----pgN~g~-~~~--~---~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
|||||.|+.|.= ..|+..|.+... ..++.. .+|... ... . .....|+.|.+.+.++.++.++|.||
T Consensus 1 MkILVTGg~GFIGs~l~~~Ll~~~~-~~v~~vd~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~D~Vi 78 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVM 78 (352)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEE
T ss_conf 9799975100899999999997799-88999847987677888887630897179985678999999999973999999
No 113
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.17 E-value=0.34 Score=28.65 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=49.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHH----
Q ss_conf 5899886588999999998589967899954983575117055128789899999998718979999795578748----
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNG---- 77 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~g---- 77 (424)
||+|+|-|+---|.+.-|.+.. .+|++...||..........+...|... ..-...|++|+.|-.|+..-
T Consensus 11 ~v~v~GlG~sG~s~a~~L~~~G--~~V~~~D~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~iV~SPGIp~~~p~~~~ 84 (457)
T PRK01390 11 TVALFGLGGSGLATARALKAGG--AEVIAWDDNPDSVAKAAAAGIATADLRT----ADWSQFAALVLSPGVPLTHPKPHW 84 (457)
T ss_pred EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHCCCCCCCCCC----CCCCCCCEEEECCCCCCCCCCCHH
T ss_conf 8999943699999999999789--9799993992066899875983145541----232038789999988865667319
Q ss_pred HHHHHHHCCCCEEE
Q ss_conf 99898605880670
Q gi|254780206|r 78 ISDALNAAGFKVFG 91 (424)
Q Consensus 78 i~d~l~~~gi~v~G 91 (424)
++...++.|+|+++
T Consensus 85 ~v~~a~~~gi~v~s 98 (457)
T PRK01390 85 TVDLARAAGVEVIG 98 (457)
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99999985991860
No 114
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=93.07 E-value=0.74 Score=26.17 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=45.3
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEEEEC----CCHH----HHHC----CEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 958998865889-99999998589967899954----9835----7511----705512878989999999871897999
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELWSIP----GNPG----IAQH----AQCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~~~p----gN~g----~~~~----~~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
|||||-|+-|.= ..|+..|.+... +|.+.. +... ...+ .+.+..|+.|.+.+.+..++.++|.||
T Consensus 1 MkvLVTGg~GFIGs~l~~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~~~~~~~~~~~d~V~ 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 9199989876799999999997849--89999889887376788888614788759983279989999999865999999
No 115
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.01 E-value=0.83 Score=25.82 Aligned_cols=107 Identities=19% Similarity=0.156 Sum_probs=64.3
Q ss_pred EEEEECCCHHH-HHHHHHHHHCCCCCEEEEEC--CCHHHHHCC-EEEEC-CCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 58998865889-99999998589967899954--983575117-05512-878989999999871897999979557874
Q gi|254780206|r 2 RVLLIGSGGRE-HALAWKIAQSPLLSELWSIP--GNPGIAQHA-QCVAI-DIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 2 kILviGsGgrE-hAl~~~l~~s~~~~~v~~~p--gN~g~~~~~-~~~~i-~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
||.+||-||-- -|||.-|.+... .|.... .++.+..+. .-+.+ ...+.+.+ .++|++|++|-.|...
T Consensus 10 ~ih~iGigG~GmsalA~~l~~~G~--~V~gsD~~~~~~~~~L~~~Gi~v~~g~~~~~l------~~~d~vV~Sp~I~~~~ 81 (459)
T PRK00421 10 RIHFVGIGGIGMSGLAEVLLNLGY--KVSGSDLKESAVTQRLLELGAIIFIGHDAENI------KGADVVVVSSAIKPDN 81 (459)
T ss_pred EEEEEEECHHHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHCCCEEECCCCHHHC------CCCCEEEECCCCCCCC
T ss_conf 899998668889999999996899--39998898997899999787999779897987------9999999899859989
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHCCH---------------HHHHHHHHHHHH
Q ss_conf 8998986058806701066655520102---------------357888765310
Q gi|254780206|r 77 GISDALNAAGFKVFGPSQRAAKLESSKS---------------FAKKFCTKYGIP 116 (424)
Q Consensus 77 gi~d~l~~~gi~v~Gp~~~aa~le~sK~---------------~~K~~l~~~gIP 116 (424)
-.....++.|||+++=..-.+++...|. +.-.+|+..|++
T Consensus 82 p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVtGTnGKTTtT~ll~~il~~~g~~ 136 (459)
T PRK00421 82 PELVAARELGIPVVRRAEMLAELMRLRTSIAVAGTHGKTTTTSLLAHVLAEAGLD 136 (459)
T ss_pred HHHHHHHHCCCCEEEHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9999999879979889999999982596499977888611899999999976998
No 116
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.95 E-value=0.49 Score=27.49 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=49.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHH
Q ss_conf 58998865889999999985899678999549835751170551287898999999987189799997955787489989
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDA 81 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~ 81 (424)
||||+|-|----|.++-|.+... .|++...+.......+.......+ ....+. .++|++|+.|-.|+..-+...
T Consensus 5 kvlV~GlG~SG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~~~~~~--~~~~~~--~~~d~vv~SPGi~~~~p~~~~ 78 (418)
T PRK00683 5 RVVVLGLGVTGKSVARFLAQKGV--YVIGVDNSLEALQSCPYIHERYLE--GAEEFP--EQVDLVVRSPGIKPYHPWVEA 78 (418)
T ss_pred EEEEEEECHHHHHHHHHHHHCCC--EEEEECCCHHHHHHCCHHHHHCCC--CHHHCC--CCCCEEEECCCCCCCCHHHHH
T ss_conf 69998088879999999997829--899982981454546145554056--233242--349899989985998899999
Q ss_pred HHHCCCCEEECC
Q ss_conf 860588067010
Q gi|254780206|r 82 LNAAGFKVFGPS 93 (424)
Q Consensus 82 l~~~gi~v~Gp~ 93 (424)
.++.|+|+++--
T Consensus 79 a~~~~i~i~sei 90 (418)
T PRK00683 79 AVALKIPVVTDI 90 (418)
T ss_pred HHHCCCCCCCHH
T ss_conf 998699754079
No 117
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=92.94 E-value=0.85 Score=25.75 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=20.8
Q ss_pred CEEEEECCCHHHH-----HHHHHHHHCCC
Q ss_conf 9589988658899-----99999985899
Q gi|254780206|r 1 MRVLLIGSGGREH-----ALAWKIAQSPL 24 (424)
Q Consensus 1 MkILviGsGgrEh-----Al~~~l~~s~~ 24 (424)
||||++..|++-| +|+++|.+.+.
T Consensus 1 Mril~~~~~~~GH~~P~l~lA~~L~~rGh 29 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGH 29 (401)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 97999879857589999999999998899
No 118
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=92.83 E-value=0.24 Score=29.77 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHCCCCEEEEEE
Q ss_conf 440111112101242025630
Q gi|254780206|r 124 SDPMKAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 124 ~~~~ea~~~~~~~g~PvVVKp 144 (424)
+|.|.|-.++..+|+-+||=|
T Consensus 81 SSREhAvwAL~d~Gir~VIA~ 101 (201)
T PRK01641 81 SSREHAPWALADYGFRVVIAP 101 (201)
T ss_pred CCHHHHHHHHHHCCCCEEEEC
T ss_conf 508899999998599899972
No 119
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=92.72 E-value=0.91 Score=25.55 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=57.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC---CCHHHHHCCE-EEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 95899886588999999998589967899954---9835751170-5512878989999999871897999979557874
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIP---GNPGIAQHAQ-CVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~p---gN~g~~~~~~-~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
+|+-|||||---.-|..|+.+|+..+-++++- .-.|...... -+.....-++.+++..+...+|+||=...+---.
T Consensus 5 ~~vAIiGsGnIGtDLm~Ki~Rs~~le~~~~vG~dp~S~GL~rA~~lGv~ts~~GId~ll~~~~~~~idiVFDATSA~aH~ 84 (298)
T PRK08300 5 IKVAIIGSGNIGTDLMIKILRSPHLEPVAMVGIDPESDGLARARRLGVATTAEGIDGLLAHPEFDDIDIVFDATSAGAHV 84 (298)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEECCCHHHHH
T ss_conf 34999888833899999986577610699980598984999999849966376799996183356878899789806689
Q ss_pred HHHHHHHHCCCCEE
Q ss_conf 89989860588067
Q gi|254780206|r 77 GISDALNAAGFKVF 90 (424)
Q Consensus 77 gi~d~l~~~gi~v~ 90 (424)
--...|++.|+.++
T Consensus 85 ~h~~~l~~~g~~~I 98 (298)
T PRK08300 85 ENAAKLRELGVRVI 98 (298)
T ss_pred HHHHHHHHCCCEEE
T ss_conf 99999997398799
No 120
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=92.65 E-value=0.93 Score=25.48 Aligned_cols=67 Identities=16% Similarity=0.358 Sum_probs=42.0
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCEEEEECC--CHHH-HHCCEEEECCCCCHHHHHHHHHHH-CCCEEE
Q ss_conf 958998865-889999999985899678999549--8357-511705512878989999999871-897999
Q gi|254780206|r 1 MRVLLIGSG-GREHALAWKIAQSPLLSELWSIPG--NPGI-AQHAQCVAIDIQNHSAIIHFCQEK-HIDLVV 67 (424)
Q Consensus 1 MkILviGsG-grEhAl~~~l~~s~~~~~v~~~pg--N~g~-~~~~~~~~i~~~d~~~i~~~a~~~-~iDlvi 67 (424)
|||||.|+. |--.|++++|.+......++..-. .+.. ......+..|.+|.+.+.+++++. ++|..|
T Consensus 1 mnVLITGas~GIG~aia~~l~~~~~~~~v~~~~~~~~~~~~~~~v~~~~~Dvt~~~~i~~~~~~~~~iD~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLETYPDATVHATYRHHKPDFRHDNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 979997556399999999998569980999973776544457983899874799999999998708778999
No 121
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=92.60 E-value=0.94 Score=25.44 Aligned_cols=76 Identities=24% Similarity=0.217 Sum_probs=44.5
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCHHHHHH
Q ss_conf 958998865-88999999998589967899954983575117055128789899999998718979999--795578748
Q gi|254780206|r 1 MRVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPELPLVNG 77 (424)
Q Consensus 1 MkILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~pL~~g 77 (424)
||||||-++ ...|=|++.|++-.. .+-+.+ .|..+...+..+ ..++|.+|. ||..|-.+|
T Consensus 1 MrILiIDn~DSFT~ni~~~lr~lg~--~v~V~~-------------~d~~~~~~~~~~--~~~~dgIILSpGPg~P~~~~ 63 (221)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGV--EAEVWR-------------NDDVRLADEAAV--AAGFDGVLLSPGPGTPERAG 63 (221)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCC--EEEEEE-------------CCCCCHHHHHHH--HCCCCEEEECCCCCCHHHCC
T ss_conf 9799993889339999999987799--189998-------------998998899876--34899899969999801167
Q ss_pred ----HHHHHHHCCCCEEECC
Q ss_conf ----9989860588067010
Q gi|254780206|r 78 ----ISDALNAAGFKVFGPS 93 (424)
Q Consensus 78 ----i~d~l~~~gi~v~Gp~ 93 (424)
+...+...++|++|-.
T Consensus 64 ~~~~~i~~~~~~~iPILGIC 83 (221)
T PRK07765 64 ASIDMVRACAAAGTPLLGVC 83 (221)
T ss_pred CCHHHHHHHHCCCCCEEEEE
T ss_conf 24889987532599889870
No 122
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.49 E-value=0.97 Score=25.34 Aligned_cols=88 Identities=8% Similarity=0.113 Sum_probs=55.1
Q ss_pred EEEEECCC---HHHHHHHHHHHHCCCC-CEEEEECCC------HHHHHCCEEEECCCCC---------HHHHHHHHHHHC
Q ss_conf 58998865---8899999999858996-789995498------3575117055128789---------899999998718
Q gi|254780206|r 2 RVLLIGSG---GREHALAWKIAQSPLL-SELWSIPGN------PGIAQHAQCVAIDIQN---------HSAIIHFCQEKH 62 (424)
Q Consensus 2 kILviGsG---grEhAl~~~l~~s~~~-~~v~~~pgN------~g~~~~~~~~~i~~~d---------~~~i~~~a~~~~ 62 (424)
+|++||+| +--+.++++|++.... ..++-+... .-+......+.+-+.| .+.+.++.++.+
T Consensus 100 ~vv~VgGGvG~Ap~~piakalk~~Gn~v~~I~Gar~k~~vilede~~~~~d~~~itTDDGS~G~kG~VT~~L~~ll~~~~ 179 (760)
T PRK12778 100 TVVCAGGGVGVAPMLPIVQALKAAGNRVITVLAGRSKELIILEKEMRESSDEVIIMTDDGSYGRKGLVTEGVEEVIKREK 179 (760)
T ss_pred EEEEEECCEEHHHHHHHHHHHHHCCCEEEEEEECCCHHHEEHHHHHHHHCCEEEEECCCCCCCCCCEECHHHHHHHHCCC
T ss_conf 39999586968987999999998699599998426633403599999743869998589999727456677999974889
Q ss_pred CCEEE-ECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 97999-97955787489989860588067
Q gi|254780206|r 63 IDLVV-VGPELPLVNGISDALNAAGFKVF 90 (424)
Q Consensus 63 iDlvi-vgpE~pL~~gi~d~l~~~gi~v~ 90 (424)
+|.|+ +||. |+..-+++.-+..|||++
T Consensus 180 ~D~v~aiGP~-~MMk~v~~~t~~~~i~t~ 207 (760)
T PRK12778 180 VNKCFAIGPA-IMMKFVCLLTKKYEIPTI 207 (760)
T ss_pred CCEEEEECCH-HHHHHHHHHHCCCCCCEE
T ss_conf 8789997978-999999987260589748
No 123
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=92.33 E-value=0.67 Score=26.47 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=63.7
Q ss_pred CEEEEECCCHHH---H----HHHHHHHHCCCCCEEEEECCCH-HHH----------HCCE-------------EEECC-C
Q ss_conf 958998865889---9----9999998589967899954983-575----------1170-------------55128-7
Q gi|254780206|r 1 MRVLLIGSGGRE---H----ALAWKIAQSPLLSELWSIPGNP-GIA----------QHAQ-------------CVAID-I 48 (424)
Q Consensus 1 MkILviGsGgrE---h----Al~~~l~~s~~~~~v~~~pgN~-g~~----------~~~~-------------~~~i~-~ 48 (424)
|||.||=|||-. | -|=.+|++-....++|=.-++| |.. .+.+ +-.|. .
T Consensus 75 l~~GviLSGGqAPGGHNVi~GLFD~lk~~np~SkLyGF~~Gp~GL~~~~~~elT~~~i~~YRN~GGFD~iGSGRtKI~T~ 154 (566)
T TIGR02477 75 LKVGVILSGGQAPGGHNVISGLFDALKKLNPESKLYGFLGGPEGLLDNNYVELTKELIDEYRNTGGFDIIGSGRTKIETE 154 (566)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCEEEECCCCCCCCCH
T ss_conf 56889875798977114677789999973776720010207444315871576378872227887742001685455688
Q ss_pred CCHHHHHHHHHHHCCC-EEEECCCHHH--HHHHHHHHHHCC--CCEEECCH
Q ss_conf 8989999999871897-9999795578--748998986058--80670106
Q gi|254780206|r 49 QNHSAIIHFCQEKHID-LVVVGPELPL--VNGISDALNAAG--FKVFGPSQ 94 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iD-lvivgpE~pL--~~gi~d~l~~~g--i~v~Gp~~ 94 (424)
.+++..++.|++++.| |||||-++.- +|=||+.|.+++ ++|+|-+|
T Consensus 155 Eq~~~al~~~k~l~LdgLVIIGGDdSNTnAA~LAEyF~~~~~~t~viGVPK 205 (566)
T TIGR02477 155 EQFAKALETAKKLKLDGLVIIGGDDSNTNAALLAEYFAKKGLKTQVIGVPK 205 (566)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 899999999876089648997479867999999999997389922786402
No 124
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.24 E-value=0.74 Score=26.17 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=51.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH---HCCE---EEECCCCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 5899886588999999998589967899954983575---1170---551287898999999987189799997955787
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIA---QHAQ---CVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~---~~~~---~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
||+|+|-|+---+.+.-|.+.. .+|++...|+... .+.+ .+.+..-..+. ....++|++|+.|-.|..
T Consensus 7 ~v~viGlG~sG~s~a~~L~~~G--~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~----~~~~~~d~vV~SPgI~~~ 80 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNG--AEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKD----ALDNGFDILALSPGISER 80 (445)
T ss_pred EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHH----HHCCCCCEEEECCCCCCC
T ss_conf 8999998999999999999789--9199997999953189997436996899378636----501599999989953899
Q ss_pred HHHHHHHHHCCCCEEECCHHHHH
Q ss_conf 48998986058806701066655
Q gi|254780206|r 76 NGISDALNAAGFKVFGPSQRAAK 98 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~Gp~~~aa~ 98 (424)
.-....+++.|+|+++-..-.++
T Consensus 81 ~p~l~~a~~~gi~i~~~~el~~~ 103 (445)
T PRK04308 81 QPDIEAFKQNGGRVLGDIELLAD 103 (445)
T ss_pred CHHHHHHHHCCCCEECHHHHHHH
T ss_conf 99999999759957159999999
No 125
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.12 E-value=1.1 Score=25.03 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=51.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCH-----HHHHC-CEEEECCC-CCHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 5899886588999999998589967899954983-----57511-70551287-89899999998718979999795578
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNP-----GIAQH-AQCVAIDI-QNHSAIIHFCQEKHIDLVVVGPELPL 74 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~-----g~~~~-~~~~~i~~-~d~~~i~~~a~~~~iDlvivgpE~pL 74 (424)
||||+|-|+---+.|.-|.+... +|++..+++ ....+ .+.+.+.. .+...+ .+..+|+||+.|-.|.
T Consensus 11 ~i~viGlG~sG~s~a~~L~~~G~--~V~~~D~~~~~~~~~~~~l~~~gi~~~~g~~~~~~----~~~~~d~vV~SPgI~~ 84 (450)
T PRK02472 11 KVLVLGLAKSGYAAAKLLHKLGA--NVTVNDGKPFSENPAAQELLEEGIKVICGSHPLEL----LDENFDLMVKNPGIPY 84 (450)
T ss_pred EEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCCCCCHHHHHHHHCCCEEEECCCHHHH----CCCCCCEEEECCCCCC
T ss_conf 89999778999999999998869--89998488665798999999679989978880786----0578879998998799
Q ss_pred HHHHHHHHHHCCCCEEECCHHH
Q ss_conf 7489989860588067010666
Q gi|254780206|r 75 VNGISDALNAAGFKVFGPSQRA 96 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~Gp~~~a 96 (424)
..-+.....+.|+|+++-...+
T Consensus 85 ~~p~~~~a~~~~i~v~~~~el~ 106 (450)
T PRK02472 85 DNPMVEEALEKGIPIITEVELA 106 (450)
T ss_pred CCHHHHHHHHCCCCEEEHHHHH
T ss_conf 9999999998699674387888
No 126
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.02 E-value=0.64 Score=26.64 Aligned_cols=115 Identities=21% Similarity=0.292 Sum_probs=65.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH----H--CCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 95899886588999999998589967899954983575----1--17055128789899999998718979999795578
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIA----Q--HAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPL 74 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~----~--~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL 74 (424)
|||+|+|=|.---|.+.-|.+-. ..|++...++... . ..+.+.+..-... . -.....|+||.-|-.|+
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~--~--~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHD--D--EDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CEEEEEECCCCCHHHHHHHHHCC--CEEEEECCCCCCCCHHHHHHHCCCCEEECCCCC--H--HCCCCCCEEEECCCCCC
T ss_conf 97999926651099999999779--869998389876532344442037223137641--1--00134778998999999
Q ss_pred HHHHHHHHHHCCCCEEECCHHHHHHH---------HC--CH----HHHHHHHHHHHHCCCCC
Q ss_conf 74899898605880670106665552---------01--02----35788876531011112
Q gi|254780206|r 75 VNGISDALNAAGFKVFGPSQRAAKLE---------SS--KS----FAKKFCTKYGIPTATYQ 121 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~Gp~~~aa~le---------~s--K~----~~K~~l~~~gIPt~~~~ 121 (424)
..-++....+.|++++|--..+.++. ++ |. +.-.++++.|.++.-.-
T Consensus 82 ~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgG 143 (448)
T COG0771 82 THPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGG 143 (448)
T ss_pred CCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECC
T ss_conf 88899999986993774888898744899989997999628899999999985599832135
No 127
>TIGR00715 precor6x_red precorrin-6x reductase; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y , .; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process.
Probab=91.54 E-value=1.2 Score=24.60 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=46.6
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEECC---CHHHHHC-CEEEECCCCCHHH-HHHHHHHHCCCEEE
Q ss_conf 958998865--889999999985899678999549---8357511-7055128789899-99999871897999
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIPG---NPGIAQH-AQCVAIDIQNHSA-IIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~pg---N~g~~~~-~~~~~i~~~d~~~-i~~~a~~~~iDlvi 67 (424)
|+||++|+= +| +|+.+|...+.+.-++.+-+ |+-.... +..+.+-..|.++ |.+|.++++||.+|
T Consensus 1 ~~vll~GGT~dsr--~~~~~L~~~~~~~i~~t~tt~~~~~l~~~~~a~~v~~gaL~~~EGL~~~l~~~~i~~~v 72 (260)
T TIGR00715 1 MSVLLMGGTKDSR--AIAKKLRALGDVEILVTVTTEEGKKLLEISQASKVVTGALDKDEGLRELLKEESIDILV 72 (260)
T ss_pred CEEEEEECCHHHH--HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCEEE
T ss_conf 9689971777899--99974037875899987415776300100377715875748887537888644963898
No 128
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=91.40 E-value=1.3 Score=24.49 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=45.4
Q ss_pred CEEEEECCCHH--HHHHHHHHHHCCCCCEEEEEC----CCHHHHHC--CEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 95899886588--999999998589967899954----98357511--705512878989999999871897999
Q gi|254780206|r 1 MRVLLIGSGGR--EHALAWKIAQSPLLSELWSIP----GNPGIAQH--AQCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgr--EhAl~~~l~~s~~~~~v~~~p----gN~g~~~~--~~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
|+|||.|+-|- -|. ++.|.+... +|.+.. |+.....- .+.+..|+.|.+.+.++-.+++||.||
T Consensus 1 ~~iLVtGGAGYIGSHt-v~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHT-VRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CEEEEECCCCHHHHHH-HHHHHHCCC--EEEEEECCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEE
T ss_conf 9299965865468999-999997898--48999568878888860204856883343199999999864998899
No 129
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=91.07 E-value=1.4 Score=24.27 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCE
Q ss_conf 28789899999998718979999795578748998986058806
Q gi|254780206|r 46 IDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKV 89 (424)
Q Consensus 46 i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v 89 (424)
+.+.+.+.+.+++++++|+..|+.-.+.-+..++|.|-+.||+-
T Consensus 130 i~V~~i~~L~~~i~~~~i~iaIiaVP~~~AQ~vad~Lv~aGIk~ 173 (211)
T PRK05472 130 IPVYHIDELEEVIKENDIEIAILTVPAEAAQEVADRLVEAGIKG 173 (211)
T ss_pred EEEECHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCEE
T ss_conf 38734999999999819938999557688999999999819839
No 130
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.04 E-value=0.5 Score=27.44 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=45.4
Q ss_pred EEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHH----HHCCEE-EECCCC-CHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 58998865--8899999999858996789995498357----511705-512878-989999999871897999979557
Q gi|254780206|r 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGI----AQHAQC-VAIDIQ-NHSAIIHFCQEKHIDLVVVGPELP 73 (424)
Q Consensus 2 kILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~----~~~~~~-~~i~~~-d~~~i~~~a~~~~iDlvivgpE~p 73 (424)
||||+|-| |+ |.+..|.+......+ ....|... ...... ..+... +.+. -...|++|+.|-.|
T Consensus 10 kv~V~GlG~sG~--aaa~~L~~~g~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~d~vv~SPGi~ 80 (468)
T PRK04690 10 RVALWGWGREGR--AAYRALRAQLPAQPL-TVFCNAEEVREVGALADAALLVETEASAQR------LAAFEVVVKSPGIS 80 (468)
T ss_pred EEEEEEECHHHH--HHHHHHHHCCCEEEE-EECCCCCCCHHHHHHCCCCCEEECCCCHHH------HHCCCEEEECCCCC
T ss_conf 799983478799--999999966990499-972883246466762045756746778557------61488999899579
Q ss_pred HHHHHHHHHHHCCCCEEECC
Q ss_conf 87489989860588067010
Q gi|254780206|r 74 LVNGISDALNAAGFKVFGPS 93 (424)
Q Consensus 74 L~~gi~d~l~~~gi~v~Gp~ 93 (424)
...-+...+.+.|++++|-.
T Consensus 81 ~~~p~~~~a~~~~i~i~~ei 100 (468)
T PRK04690 81 PYRPEALAAAAQGTPFIGGT 100 (468)
T ss_pred CCCHHHHHHHHCCCCEEEHH
T ss_conf 86899999998799488689
No 131
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.01 E-value=1.3 Score=24.35 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=49.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCH---HHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 5899886588999999998589967899954983---5751170551287898999999987189799997955787489
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNP---GIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~---g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi 78 (424)
||+|+|-|.---|.+.-|.+.. .+|++...+. ....+.+.+.+..-... .++ -...|++|+.|-.|+..-+
T Consensus 8 ~v~V~GlG~sG~s~~~~L~~~G--~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~--~~~--~~~~d~vV~SPGI~~~~p~ 81 (438)
T PRK03806 8 NVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTPPGLDKLPENVERHTGSLN--DEW--LLAADLIVASPGIALAHPS 81 (438)
T ss_pred EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHCCCCEEECCCC--HHH--HCCCCEEEECCCCCCCCHH
T ss_conf 8999945788899999999789--969999899990057886458846657779--668--0679999989978998989
Q ss_pred HHHHHHCCCCEEEC
Q ss_conf 98986058806701
Q gi|254780206|r 79 SDALNAAGFKVFGP 92 (424)
Q Consensus 79 ~d~l~~~gi~v~Gp 92 (424)
...+.+.|+|+++-
T Consensus 82 ~~~a~~~~i~i~se 95 (438)
T PRK03806 82 LSAAADAGVEIVGD 95 (438)
T ss_pred HHHHHHCCCCEEEH
T ss_conf 99999879947769
No 132
>PRK10206 putative dehydrogenase; Provisional
Probab=90.99 E-value=1.4 Score=24.22 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=70.4
Q ss_pred EEEEECCC--HHH-HHHHHHHHHCCCCCEEEE-ECCCHHHHHCCEEEE-C-CCCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 58998865--889-999999985899678999-549835751170551-2-87898999999987189799997955787
Q gi|254780206|r 2 RVLLIGSG--GRE-HALAWKIAQSPLLSELWS-IPGNPGIAQHAQCVA-I-DIQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 2 kILviGsG--grE-hAl~~~l~~s~~~~~v~~-~pgN~g~~~~~~~~~-i-~~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
||-|||.| |+. |+-. |.+.+....+.+ ...++.....+...+ + -..|+++++ .+..||+|++.....+-
T Consensus 4 rvaiiG~G~~~~~fH~P~--i~~~~~~~~v~~v~~~~~~~~~~a~~~~~~~~~~~~~~ll---~~~~id~V~i~tP~~~H 78 (345)
T PRK10206 4 NCAFIGFGKSTTRYHLPY--VLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVL---NDPDVKLVVVCTHADSH 78 (345)
T ss_pred EEEEECCCHHHHHHHHHH--HHCCCCCEEEEEEECCCHHHHHHHHHCCCCCEECCHHHHH---CCCCCCEEEECCCCHHH
T ss_conf 799992649999998999--9638995799999788761888887769981228999995---49999999987995789
Q ss_pred HHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCC--C-CCCHHHHHHHH--CCCCEEEE
Q ss_conf 48998986058806701066655520102357888765310111122--3-44011111210--12420256
Q gi|254780206|r 76 NGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQH--F-SDPMKAKQYVQ--NKSMPIVV 142 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~--~-~~~~ea~~~~~--~~g~PvVV 142 (424)
..++-..-++|..|+.-..-+.-++.-+.. -++.++.|++-..|.. | .+...+++.++ .+|-..-+
T Consensus 79 ~~~a~~al~aGkhV~~EKP~~~~~~ea~~l-~~~a~~~g~~l~v~~nrR~~~~~~~~k~~i~~G~lG~v~~~ 149 (345)
T PRK10206 79 FEYAKRALEAGKNVLVEKPFTPTLAQAKEL-FALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEV 149 (345)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHH-HHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999999997899289803664989999999-99999709979998720179499999998665877770999
No 133
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=90.82 E-value=1.4 Score=24.11 Aligned_cols=86 Identities=21% Similarity=0.389 Sum_probs=57.1
Q ss_pred EEEEECCC---HHHHHHHHHHHHCCCCCEEEEECC--C-------HHHHHCCEEEECCCCC---------HHHHHHHHHH
Q ss_conf 58998865---889999999985899678999549--8-------3575117055128789---------8999999987
Q gi|254780206|r 2 RVLLIGSG---GREHALAWKIAQSPLLSELWSIPG--N-------PGIAQHAQCVAIDIQN---------HSAIIHFCQE 60 (424)
Q Consensus 2 kILviGsG---grEhAl~~~l~~s~~~~~v~~~pg--N-------~g~~~~~~~~~i~~~d---------~~~i~~~a~~ 60 (424)
+|++||+| +--|-++++|.+... +|...-| | ..+....+.+.+-..| .+.+.++.++
T Consensus 101 ~Vv~VgGGvGiApv~PiakaLke~GN--~V~~IiGaR~kdlvilede~~~~sdel~i~TDDGS~G~kG~VTd~L~elle~ 178 (993)
T PRK12775 101 HVVFVGGGLGVAPIFPQLRAFKEAGA--RTTAIMGFRNKDLVFWEDKFREYADDLIICTDDGSYGEPGFVTAALKRVCEK 178 (993)
T ss_pred EEEEEECCEEHHHHHHHHHHHHHCCC--EEEEEEECCCCCCEEHHHHHHHHCCCEEEECCCCCCCCCCEEHHHHHHHHHC
T ss_conf 39999087743023899999998599--0899984266002334999986468389976899987564206999999866
Q ss_pred HCCCEEE-ECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 1897999-97955787489989860588067
Q gi|254780206|r 61 KHIDLVV-VGPELPLVNGISDALNAAGFKVF 90 (424)
Q Consensus 61 ~~iDlvi-vgpE~pL~~gi~d~l~~~gi~v~ 90 (424)
.++|+|+ +|| .++..-+++.-+..|||.+
T Consensus 179 ~k~D~V~aIGP-~~MMK~vs~~Tk~ygIpT~ 208 (993)
T PRK12775 179 QKPDKVVAIGP-MPMMHACVETTRPFGVKTM 208 (993)
T ss_pred CCCCEEEEECC-HHHHHHHHHHHCCCCCCEE
T ss_conf 89888999898-8999999987252599758
No 134
>pfam08886 GshA Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=90.79 E-value=0.58 Score=26.96 Aligned_cols=101 Identities=24% Similarity=0.332 Sum_probs=51.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHHHCCH--------HHHHHHHHHHHH----CCCCCCCCCCH-
Q ss_conf 8979999795578748998986058-806701066655520102--------357888765310----11112234401-
Q gi|254780206|r 62 HIDLVVVGPELPLVNGISDALNAAG-FKVFGPSQRAAKLESSKS--------FAKKFCTKYGIP----TATYQHFSDPM- 127 (424)
Q Consensus 62 ~iDlvivgpE~pL~~gi~d~l~~~g-i~v~Gp~~~aa~le~sK~--------~~K~~l~~~gIP----t~~~~~~~~~~- 127 (424)
.+|+++.--+ |++|+-+.|+... -+++ |+..+-+--+.|+ .+++|.+-.+|- +|.|..+.+.+
T Consensus 152 ~Pc~ILLNND--LS~GiP~iL~~l~~Q~il-Ppl~~GW~~RrKS~HF~~Y~~v~~eF~~l~~IDpWli~p~f~~c~~idf 228 (404)
T pfam08886 152 DPCLILLNND--LSSGIPEILQGLHEQYLL-PPLHAGWANRRKSNHFSAYDEVAKEFAKLIGIDPWLINPLFSSCGGVDF 228 (404)
T ss_pred CCCEEEECCC--CCCCCCHHHHCCCCCCCC-CCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCC
T ss_conf 8757997475--443683566064655055-9845674410122678999999999999749991113535023076267
Q ss_pred -----------HHHHHHHC-------CC---CE-EEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf -----------11112101-------24---20-25630465343000232356778887
Q gi|254780206|r 128 -----------KAKQYVQN-------KS---MP-IVVKADGLCAGKGVVVAATVDEATSA 165 (424)
Q Consensus 128 -----------ea~~~~~~-------~g---~P-vVVKp~~~agGkGV~i~~~~~e~~~~ 165 (424)
++.+.+.+ .| -| ++||+|...-|.||..+++-+|....
T Consensus 229 ~~~~g~~~La~~Vd~lL~kI~~KY~eygI~ekPfV~VKad~GTYGMGIm~v~~~~ei~~L 288 (404)
T pfam08886 229 HDREGEECLAEKVDALLAKIREKYKEYGIKEKPFVFVKADAGTYGMGIMTVRSGDEVLAL 288 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCHHHHHHH
T ss_conf 744369999999999999999999970999884599967899877337995599999886
No 135
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=90.53 E-value=0.74 Score=26.17 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CHH-HHHHHHHHCCCCCE-EEE---
Q ss_conf 122344011111210124202563046534300023235677888788751445-317-77887752057523-442---
Q gi|254780206|r 120 YQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-NST-VIIEEYLEGFEVSF-FAL--- 193 (424)
Q Consensus 120 ~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-~~~-VliEefl~G~E~Sv-~~i--- 193 (424)
.+...|. ++++.+-+.+-||.+|- |+ ..+.+|.+.|.|+++.+. +.. ||+|.=|-+.|-|- +++
T Consensus 116 ARNmQNF-~LL~~vG~~~KPVLLKR-------G~--~aTi~EwL~AAEYIl~~GsN~~ViLCERGIRTfE~~TR~TLD~s 185 (262)
T TIGR01361 116 ARNMQNF-ELLKEVGKQGKPVLLKR-------GM--GATIEEWLEAAEYILSEGSNGNVILCERGIRTFEKSTRNTLDLS 185 (262)
T ss_pred CCCCCCH-HHHHHHHHCCCCEEEEC-------CC--CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 5412256-99999722379755307-------72--15899999999999846889954899758567630024533378
Q ss_pred --CCCCCCCCCCCCCC
Q ss_conf --15776310352000
Q gi|254780206|r 194 --CDGKTAIPFTTARD 207 (424)
Q Consensus 194 --~dG~~~~~l~~~~d 207 (424)
.-=+....||++=|
T Consensus 186 aV~~~K~~tHLPi~VD 201 (262)
T TIGR01361 186 AVPLLKKETHLPIIVD 201 (262)
T ss_pred HHHHHHHCCCCCEEEC
T ss_conf 9999986058987871
No 136
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.50 E-value=1.5 Score=23.92 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=65.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCC-HHHHHCCEEEECCCC-----CHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 9589988658899999999858996789995498-357511705512878-----9899999998718979999795578
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGN-PGIAQHAQCVAIDIQ-----NHSAIIHFCQEKHIDLVVVGPELPL 74 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN-~g~~~~~~~~~i~~~-----d~~~i~~~a~~~~iDlvivgpE~pL 74 (424)
.||||+|-||--..++.-|..+. +.++.++.+. -....+..++..+.. -.+...+..++.+++.-|..-...+
T Consensus 22 s~VlvvG~GGLG~~v~~~La~aG-vg~i~ivD~d~v~~snL~RQ~l~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSG-IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred CCEEEECCCHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 95999887889999999999837-98699998991877773978603233478885999999999738997289870458
Q ss_pred HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 74899898605880670106665552010235788876531011
Q gi|254780206|r 75 VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTA 118 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~ 118 (424)
..--.+.++...+-+.+.....+| ..--+.|.++|+|--
T Consensus 101 ~~~~~~~i~~~D~Vvd~~dn~~~r-----~~iN~~c~~~~iplI 139 (197)
T cd01492 101 SEKPEEFFSQFDVVVATELSRAEL-----VKINELCRKLGVKFY 139 (197)
T ss_pred CHHHHHHHHCCCEEEECCCCHHHH-----HHHHHHHHHCCCCEE
T ss_conf 576899982899999999999999-----999999998199789
No 137
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.88 E-value=0.67 Score=26.47 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=28.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH
Q ss_conf 58998865889999999985899678999549835
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPG 36 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g 36 (424)
+|||||+||-..|++++|.+.. +.+++++.-|..
T Consensus 21 ~vlIlGaGGaarai~~aL~~~g-~~~I~i~nR~~~ 54 (155)
T cd01065 21 KVLILGAGGAARAVAYALAELG-AAKIVIVNRTLE 54 (155)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCHH
T ss_conf 9999867589999999999719-982288608999
No 138
>pfam01902 ATP_bind_4 ATP-binding region. This family of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.In some members of this family, this domain is associated with pfam01042.
Probab=89.70 E-value=1.8 Score=23.48 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=79.3
Q ss_pred CEEEEECCCHHH--HHHHHHHHHCCCCCEEE-EECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE---CCCHHH
Q ss_conf 958998865889--99999998589967899-954983575117055128789899999998718979999---795578
Q gi|254780206|r 1 MRVLLIGSGGRE--HALAWKIAQSPLLSELW-SIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV---GPELPL 74 (424)
Q Consensus 1 MkILviGsGgrE--hAl~~~l~~s~~~~~v~-~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv---gpE~pL 74 (424)
||+.++=|||.- +||-+++++ ..+..+. +.|.|+ +.+.......+-+...|+...+.++.+ |.+.--
T Consensus 1 MK~~~l~SGGKDS~~Al~~a~~~-~~v~~L~t~~~~~~------ds~~~H~~~~~l~~~qA~algiPl~~~~~~~~~e~~ 73 (219)
T pfam01902 1 MKVAALYSGGKDSNYALYWALKE-IEVPYLVSMKSENK------ESYMFHEPNLHLTKLLAEALGIPIIKLYTKGEEEKE 73 (219)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEEECCC------CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 93999972869999999999871-98379999963799------810261578899999999759968999679861799
Q ss_pred HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf 748998986058806701066655520102357888765310--11112234401111121012420256304
Q gi|254780206|r 75 VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP--TATYQHFSDPMKAKQYVQNKSMPIVVKAD 145 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP--t~~~~~~~~~~ea~~~~~~~g~PvVVKp~ 145 (424)
...+...+++.|+..+.-. +..++.-|.+-.++|.+.|+- +|-|. .+.+++..-+-..||-.+|...
T Consensus 74 ~~~L~~~l~~~~i~~vv~G--dI~s~~qr~~~e~~c~~lgl~~~~PLW~--~d~~~ll~e~i~~Gf~aiIv~v 142 (219)
T pfam01902 74 VEDLAGFLESLDVDALVAG--AIYSEYQKSRIESVCRELGLKPFAPLWG--RDPRKLAEEIVREGFEVAIVAV 142 (219)
T ss_pred HHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHHHHCCCEEEECCCC--CCHHHHHHHHHHCCCEEEEEEE
T ss_conf 9999999987598699998--6036889999999999729889710348--9999999999987994999998
No 139
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=89.66 E-value=1.8 Score=23.46 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=54.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHCCEE-----EECCCCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 5899886588999999998589967899954-98357511705-----51287898999999987189799997955787
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP-GNPGIAQHAQC-----VAIDIQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p-gN~g~~~~~~~-----~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
||||+|-||--..+++.|.++. +.++.++. +.-....+..+ ..+-..-.+.+.+..++.+++.-+..-...+.
T Consensus 3 kVlivG~GglG~~~~~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~ 81 (134)
T pfam00899 3 RVLVVGAGGLGSPAAEYLARAG-VGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLRAINPDVEVEAYPERLT 81 (134)
T ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCEEECCHHHCCCEEHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 8999898889999999999938-974999989567632227224233646688107999999997789958999925679
Q ss_pred -HHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf -48998986058806701066655520102357888765310
Q gi|254780206|r 76 -NGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 76 -~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP 116 (424)
.-+.+.+....+=+-+-... ..|.+.-+++.++++|
T Consensus 82 ~~~~~~~~~~~DvVi~~~Dn~-----~~r~~ln~~c~~~~ip 118 (134)
T pfam00899 82 PENLEELLKGADLVVDALDNF-----AARYLLNDACVKRGIP 118 (134)
T ss_pred HHHHHHCCCCCCEEEECCCCH-----HHHHHHHHHHHHCCCC
T ss_conf 778764264488999998999-----9999999999985998
No 140
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=89.58 E-value=1.8 Score=23.41 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=52.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCC-EEE--EECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEEC---CCHHHH
Q ss_conf 5899886588999999998589967-899--9549835751170551287898999999987189799997---955787
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLS-ELW--SIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVG---PELPLV 75 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~-~v~--~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivg---pE~pL~ 75 (424)
+|+|+|+|-.-..++..++++|... ++. +....++. ..++ -.-+.+++.+++++++||-|++. .+.+-.
T Consensus 146 ~v~IvG~~~~~~~l~~~i~~~p~~G~~vvG~~dd~~~~~----~~~~-~lG~~~~l~~~~~~~~id~V~ialp~~~~~~i 220 (464)
T PRK10124 146 MVAVAGDLPAGQMLLESFRNQPWLGFEVVGVYHDPKPGG----VSND-WAGNLQQLVEDAKAGKIHNVYIAMSMCDGARV 220 (464)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC----CCCC-CCCCHHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 899983888999999999729667966999966887666----7899-87899999999986899989996682368899
Q ss_pred HHHHHHHHHCCCCEE
Q ss_conf 489989860588067
Q gi|254780206|r 76 NGISDALNAAGFKVF 90 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~ 90 (424)
..+.+.|+..++.+.
T Consensus 221 ~~lv~~l~~~~v~v~ 235 (464)
T PRK10124 221 KKLVHQLADTTCSVL 235 (464)
T ss_pred HHHHHHHHHCCCEEE
T ss_conf 999999961895599
No 141
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.57 E-value=1.3 Score=24.46 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=24.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 95899886588999999998589967899954983575117055128789899999998718979
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
|||||||+|--..-=+..|.+....-. .++| .-.+++.+++++.++.+
T Consensus 25 lkvLVVGGG~VA~RKi~~Ll~agA~Vt-VVSP----------------~~~~el~~L~~~~~I~~ 72 (222)
T PRK05562 25 IKVLVIGGGKAAFIKGKTFLKKGCYVE-ILSK----------------EFSKEFLDLKKYGNLKL 72 (222)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE-EECC----------------CCCHHHHHHHHCCCEEE
T ss_conf 669999987999999999987899899-9878----------------66889999997598699
No 142
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=89.46 E-value=1.8 Score=23.36 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=36.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCC-EEE--E-ECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 5899886588999999998589967-899--9-549835751170551287898999999987189799997
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLS-ELW--S-IPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~-~v~--~-~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivg 69 (424)
||+|||+|.+...++..+.+.+... ++. + .++++.. ..... -..+.+.+.+++.++++|-|++.
T Consensus 126 rvliiG~~~~a~~l~~~l~~~~~~g~~v~G~~~~~~~~~~--~~~~~--~i~~~~~l~~~~~~~~ideV~ia 193 (442)
T TIGR03013 126 RILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPAY--VPSEH--VIENGDGLVEYVLRHRIDEIVIA 193 (442)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC--CCCCC--CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 6999977199999999986197798189999967986334--67666--57877899999996899999996
No 143
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.35 E-value=0.79 Score=25.97 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=46.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH--H-HH---CC-EEEEC-CCCCHHHHHHHHHHHCCCEEEECCCH-
Q ss_conf 58998865889999999985899678999549835--7-51---17-05512-87898999999987189799997955-
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPG--I-AQ---HA-QCVAI-DIQNHSAIIHFCQEKHIDLVVVGPEL- 72 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g--~-~~---~~-~~~~i-~~~d~~~i~~~a~~~~iDlvivgpE~- 72 (424)
||||+|-|.---|++.-|.+... +|++...++. . .. .. ....+ ...+.+ + -.++|+||+.|-.
T Consensus 9 ~vlV~GlG~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~-~-----~~~~d~vV~SPGI~ 80 (501)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGC--RLRVADTREAPPNLAALQAEGIDAEFVGGAFDPA-L-----LDGVELVALSPGLS 80 (501)
T ss_pred EEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHH-H-----HCCCCEEEECCEEC
T ss_conf 39998336889999999997898--4999989999861999986089818977889867-8-----46899999899008
Q ss_pred ---HHHHHHHHHHHHCCCCEEEC
Q ss_conf ---78748998986058806701
Q gi|254780206|r 73 ---PLVNGISDALNAAGFKVFGP 92 (424)
Q Consensus 73 ---pL~~gi~d~l~~~gi~v~Gp 92 (424)
|...-+....++.|+||++=
T Consensus 81 p~~p~~~~~l~~A~~~gi~i~~e 103 (501)
T PRK02006 81 PLEPALAALLAAARERGIPVWGE 103 (501)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEH
T ss_conf 88854319999999879958768
No 144
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=89.29 E-value=1.2 Score=24.68 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=49.1
Q ss_pred EEEEEC-CC--HHHHHHHHHHHHCCCCCEEEEE-C-CCHHHHHC--C------EEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 589988-65--8899999999858996789995-4-98357511--7------055128789899999998718979999
Q gi|254780206|r 2 RVLLIG-SG--GREHALAWKIAQSPLLSELWSI-P-GNPGIAQH--A------QCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 2 kILviG-sG--grEhAl~~~l~~s~~~~~v~~~-p-gN~g~~~~--~------~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
||.||| +| |.| |.+-|.+.|.++-+++. . ...|...- . ....+...+. ..-.++|++|.
T Consensus 1 kvaIiGatGyvG~e--LirlL~~hp~~~i~~l~~s~~saG~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Dvvf~ 72 (121)
T pfam01118 1 KVAIVGATGYVGQE--LLRLLAEHPPLELVALVASSRSAGKKVAFAGPWLTGGVDLLLEDVDP------EDLKDVDIVFF 72 (121)
T ss_pred CEEEECCCHHHHHH--HHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCEEEECCH------HHHCCCCEEEE
T ss_conf 99998936199999--99999718875513788505658960144165424666644775897------78538989998
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 79557874899898605880670
Q gi|254780206|r 69 GPELPLVNGISDALNAAGFKVFG 91 (424)
Q Consensus 69 gpE~pL~~gi~d~l~~~gi~v~G 91 (424)
.-....+..++..|.+.|++||-
T Consensus 73 alp~~~s~~~~~~~~~~g~~VID 95 (121)
T pfam01118 73 ALPAGVSKELAPKLLEAGAVVID 95 (121)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 38768999999998715989987
No 145
>PRK08507 prephenate dehydrogenase; Validated
Probab=89.27 E-value=1.9 Score=23.26 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=41.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEE-ECCC-CCHHHHHHHHHHHCCCEEEECC
Q ss_conf 95899886588999999998589967899954983575117055-1287-8989999999871897999979
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCV-AIDI-QNHSAIIHFCQEKHIDLVVVGP 70 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~-~i~~-~d~~~i~~~a~~~~iDlvivgp 70 (424)
|||+|||-|=---.|+.+|++.....+|+-..-|+.+...+... .+|. .+.+.+ .+.|+||+.-
T Consensus 1 M~I~IiGlGLiGgSla~alk~~~~~~~V~g~d~~~~~~~~A~~~g~id~~~~~~~i------~~aDlVila~ 66 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKENKLISCVYGYDHNEEHEKDALDLGLVDEIVEFEEI------KECDVIFLAI 66 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCHHHC------CCCCEEEEEC
T ss_conf 98999900878999999999509986799995999999999986998610673123------6579899917
No 146
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.80 E-value=2 Score=23.04 Aligned_cols=91 Identities=10% Similarity=0.109 Sum_probs=49.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHH------HHC-CEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 589988658899999999858996789995498357------511-7055128789899999998718979999795578
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGI------AQH-AQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPL 74 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~------~~~-~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL 74 (424)
||+|+|-|.---|++.-|.+... +|.+...+..- ..+ ...+.+..-+. -.+.. .++|+||+.|-.|.
T Consensus 16 kv~i~GlG~sG~a~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~--~~~~~--~~~d~vv~SPgI~~ 89 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEISLELKEKGVNLELGEN--YLDKL--TGFDVIFKTPSMRI 89 (458)
T ss_pred EEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHHHHHCCCEEEECCC--HHHHC--CCCCEEEECCCCCC
T ss_conf 69999787889999999997889--79999898843148999999857998995784--05423--78888998998799
Q ss_pred HHHHHHHHHHCCCCEEECCHHHHH
Q ss_conf 748998986058806701066655
Q gi|254780206|r 75 VNGISDALNAAGFKVFGPSQRAAK 98 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~Gp~~~aa~ 98 (424)
..-......+.|+++.+--....+
T Consensus 90 ~~p~~~~a~~~gi~v~~e~el~~~ 113 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIK 113 (458)
T ss_pred CCHHHHHHHHCCCCEECHHHHHHH
T ss_conf 899999999879937409999986
No 147
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=88.67 E-value=2.1 Score=22.98 Aligned_cols=113 Identities=21% Similarity=0.405 Sum_probs=66.3
Q ss_pred CEEEEECCC--HHHHH--HHHHHHH-CCCCCEEEEECCCHHHHHCCEEEECCCCCH-------------------HHHHH
Q ss_conf 958998865--88999--9999985-899678999549835751170551287898-------------------99999
Q gi|254780206|r 1 MRVLLIGSG--GREHA--LAWKIAQ-SPLLSELWSIPGNPGIAQHAQCVAIDIQNH-------------------SAIIH 56 (424)
Q Consensus 1 MkILviGsG--grEhA--l~~~l~~-s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~-------------------~~i~~ 56 (424)
|||+|+-+= |=-|| |..+|++ .+.+ +++ .-|-+.|...+-...+|+++. ..+.+
T Consensus 2 mkifi~aGE~SGD~~ga~li~~Lk~~~~~~-~~~-GiGG~~M~~~G~~~l~d~~~l~vmG~~evl~~~~~~~~~~~~~~~ 79 (382)
T PRK00025 2 LRIAIVAGEVSGDLLGAGLIRALKAQAPNL-EFV-GIGGPRMEAAGFESLFDMEELAVMGLVEVLPRLPRLLKIRKELKR 79 (382)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCC-EEE-EECCHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 489999068418899999999998319896-799-988299997699544775783130199999779999999999999
Q ss_pred HHHHHCCCEEEE-C-CCHHHHHHHHHHHHHC--CCCEE---ECCH------HHHHHH--HCCH-----HHHHHHHHHHHH
Q ss_conf 998718979999-7-9557874899898605--88067---0106------665552--0102-----357888765310
Q gi|254780206|r 57 FCQEKHIDLVVV-G-PELPLVNGISDALNAA--GFKVF---GPSQ------RAAKLE--SSKS-----FAKKFCTKYGIP 116 (424)
Q Consensus 57 ~a~~~~iDlviv-g-pE~pL~~gi~d~l~~~--gi~v~---Gp~~------~aa~le--~sK~-----~~K~~l~~~gIP 116 (424)
.+++++||.+|. . |+ ..--++..+++. |+|++ .|+- ++-.+. -|+. |-.++++++|++
T Consensus 80 ~i~~~~Pd~vi~ID~pg--Fnlrlak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~D~ll~ifPFE~~~f~~~g~~ 157 (382)
T PRK00025 80 LLLAEPPDVFILIDAPD--FNLRLAKKLKKALPGIPIIHYVSPSVWAWRPGRAKKIAKATDHVLAILPFEAAFYDKLGVP 157 (382)
T ss_pred HHHHCCCCEEEEECCCH--HHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCC
T ss_conf 99864999999977830--6599999999716999889994715654064189999999987610876568999865998
Q ss_pred C
Q ss_conf 1
Q gi|254780206|r 117 T 117 (424)
Q Consensus 117 t 117 (424)
+
T Consensus 158 ~ 158 (382)
T PRK00025 158 V 158 (382)
T ss_pred C
T ss_conf 1
No 148
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=88.62 E-value=2.1 Score=22.95 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=59.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHCCEE-----EECCCCCHHHHHHHHHHHCCCEEEECCCHHH-
Q ss_conf 5899886588999999998589967899954-98357511705-----5128789899999998718979999795578-
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP-GNPGIAQHAQC-----VAIDIQNHSAIIHFCQEKHIDLVVVGPELPL- 74 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p-gN~g~~~~~~~-----~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL- 74 (424)
||||+|-||--..+++.|.+++- .++.++. +.-....+..+ ..+-..-.+...+..++.+++.-+..-...+
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv-~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99999979899999999999379-71999978987500146422589889492248999999985689838999945689
Q ss_pred HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 7489989860588067010666555201023578887653101111
Q gi|254780206|r 75 VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~ 120 (424)
..-..+.++...+-+-+-... .+|...-+++.++++|.-..
T Consensus 80 ~~~~~~~~~~~dvvi~~~D~~-----~~r~~l~~~~~~~~ip~i~~ 120 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAIDNI-----AVRRALNRACKELGIPVIDA 120 (143)
T ss_pred HHHHHHHHCCCCEEEECCCCH-----HHHHHHHHHHHHCCCCEEEE
T ss_conf 646999975999999877999-----99999999999869988996
No 149
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=88.44 E-value=0.47 Score=27.59 Aligned_cols=65 Identities=26% Similarity=0.415 Sum_probs=34.9
Q ss_pred EEEEECCC-H---HHHHHHHHHHHCCCCCEEEEE--------------CCCH-HHHHCCEEEECCCCCH-HHHHHH---H
Q ss_conf 58998865-8---899999999858996789995--------------4983-5751170551287898-999999---9
Q gi|254780206|r 2 RVLLIGSG-G---REHALAWKIAQSPLLSELWSI--------------PGNP-GIAQHAQCVAIDIQNH-SAIIHF---C 58 (424)
Q Consensus 2 kILviGsG-g---rEhAl~~~l~~s~~~~~v~~~--------------pgN~-g~~~~~~~~~i~~~d~-~~i~~~---a 58 (424)
||||||+| | ||= .|=+.|+++.++ |.-. | +.-.+++.+.+.|- +-|.+. -
T Consensus 78 ~VLvIGGGDGG~lREV------~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g-~~dderv~~~i~DG~~fl~~~Gasd 150 (284)
T TIGR00417 78 KVLVIGGGDGGVLREV------VKHKSVEKATLVDIDEKVIELSRKYLPKLAAG-SFDDERVDLAIDDGFKFLRDTGASD 150 (284)
T ss_pred EEEEEECCCCCEEEEE------EECCCCCEEEEEECCHHHHHHHHHHCHHHHCC-CCCCCEEEEEECCCHHHHHHCCCCC
T ss_conf 4789963888468788------75598167999972747899988826121056-6588803589825179897615222
Q ss_pred HHHCCCEEEECCCHH
Q ss_conf 871897999979557
Q gi|254780206|r 59 QEKHIDLVVVGPELP 73 (424)
Q Consensus 59 ~~~~iDlvivgpE~p 73 (424)
-+++-|.+|+-+.+|
T Consensus 151 v~~~fDVIIvDstDP 165 (284)
T TIGR00417 151 VEKKFDVIIVDSTDP 165 (284)
T ss_pred CCCCCCEEEEECCCC
T ss_conf 212144799727789
No 150
>cd07894 Adenylation_RNA_ligase The Adenylation domain of RNA circularization protein, which catalyzes the circularization of RNA molecules in an ATP-dependent reaction, comprises the enzyme's catalytic unit. RNA circularization protein is capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=88.02 E-value=0.29 Score=29.12 Aligned_cols=114 Identities=21% Similarity=0.313 Sum_probs=59.8
Q ss_pred HHHHHHCCCEEEE----CCCHHHHHHHHHHHHHCCCCEEECCHH-HHHHHHCCHHHHHHHHHHHHHCCCC-CCCC--CCH
Q ss_conf 9998718979999----795578748998986058806701066-6555201023578887653101111-2234--401
Q gi|254780206|r 56 HFCQEKHIDLVVV----GPELPLVNGISDALNAAGFKVFGPSQR-AAKLESSKSFAKKFCTKYGIPTATY-QHFS--DPM 127 (424)
Q Consensus 56 ~~a~~~~iDlviv----gpE~pL~~gi~d~l~~~gi~v~Gp~~~-aa~le~sK~~~K~~l~~~gIPt~~~-~~~~--~~~ 127 (424)
+|-+ ..+|++++ |||.|-+.+-...-+..++-+|---.. +.+.-.-+.. .+++++||+|+++. ..|+ +.+
T Consensus 94 ~fF~-d~P~lvLCgE~~GpeNPYv~~~~p~~edi~ffvFDi~~k~t~~~Lpv~er-~~L~e~Yglp~V~~fg~~~~~~~~ 171 (340)
T cd07894 94 EFFD-DYPDLMLCGEVVGPENPYVPYDYPVAEDVGFFVFDIRKKNTGKPLPVEER-RELLEEYGLPHVRLFGTFTVDEVE 171 (340)
T ss_pred HHHH-HCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHH-HHHHHHCCCCCCCCCCEECHHHHH
T ss_conf 7786-58986899986068999978999875773189998668798985799999-999997399976441278399999
Q ss_pred HHHHHHHCC---CC-EEEEEE-CC-CCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 111121012---42-025630-46-5343000232356778887887514
Q gi|254780206|r 128 KAKQYVQNK---SM-PIVVKA-DG-LCAGKGVVVAATVDEATSAIDRCFQ 171 (424)
Q Consensus 128 ea~~~~~~~---g~-PvVVKp-~~-~agGkGV~i~~~~~e~~~~~~~~~~ 171 (424)
++.+.+.++ |. =+|+|. ++ ..--|=++-..+..|+..+....|.
T Consensus 172 ~l~eiI~~L~~egrEGVVlKdp~~~~~~lKYtT~~~n~~Di~~~~~~~~d 221 (340)
T cd07894 172 ELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSSSNISDIRYAFRYPFD 221 (340)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHCC
T ss_conf 99999998735488318974866667851552376675889999863021
No 151
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=88.01 E-value=2.3 Score=22.69 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=42.4
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEEEECC-----CHHH-HH--C---CEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 958998865889-999999985899678999549-----8357-51--1---705512878989999999871897999
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELWSIPG-----NPGI-AQ--H---AQCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~~~pg-----N~g~-~~--~---~~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
-||||.|+.|.= ..|++.|.+... ..++++.. |.-. .. . ...+..|..|.+.+.++.+++++|.|+
T Consensus 2 KkILVTGg~GFIGs~Lv~~Ll~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~pD~Vi 79 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEYQPDCVM 79 (355)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 9699937875799999999997699-88999828987652544445412787169980058899999999861998899
No 152
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.00 E-value=2.3 Score=22.68 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=37.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEE-ECCC--CCHHHHHHHHHHHCCCEEEECC
Q ss_conf 95899886588999999998589967899954983575117055-1287--8989999999871897999979
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCV-AIDI--QNHSAIIHFCQEKHIDLVVVGP 70 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~-~i~~--~d~~~i~~~a~~~~iDlvivgp 70 (424)
|||+|||-|=---.||.+|++.. .+|+-..-|+.+...+... .+|. .+.+. + .+.|+||++.
T Consensus 2 mkI~IiGlGLIGgSla~al~~~~--~~V~g~d~~~~~~~~A~~~g~id~~~~~~~~----~--~~aDliila~ 66 (280)
T PRK07417 2 MNIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERGLVDEASTDLSL----L--KDCDLVILAL 66 (280)
T ss_pred CEEEEEECCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCCCEECCCHHH----H--CCCCEEEECC
T ss_conf 78999931857999999999689--9799997999999999986997520278746----0--5799899879
No 153
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=87.68 E-value=2.4 Score=22.55 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=34.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEE
Q ss_conf 958998865889999999985899-678999549835751170551287898999999987189799
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPL-LSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLV 66 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~-~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlv 66 (424)
|||+..|+.-.-+...++|.++.. +..|++.|..+.- . .+. + -...+.+||+++++.+.
T Consensus 1 mkI~f~Gt~~fs~~~L~~L~~~~~~i~~Vvt~pdk~~g-R-~~k--~---~~~~v~~~a~~~~i~~~ 60 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAG-R-GKK--L---TPSPVKQLALEHGIPVL 60 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-C-CCC--C---CCCHHHHHHHHCCCCEE
T ss_conf 98999889889999999999789947999929998668-9-997--9---89989999998699388
No 154
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=87.50 E-value=2.4 Score=22.48 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=41.7
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHH-----H---CC--EEEECCCCCHHHHHHHHHH-----HCCC
Q ss_conf 958998865-88999999998589967899954983575-----1---17--0551287898999999987-----1897
Q gi|254780206|r 1 MRVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIA-----Q---HA--QCVAIDIQNHSAIIHFCQE-----KHID 64 (424)
Q Consensus 1 MkILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~-----~---~~--~~~~i~~~d~~~i~~~a~~-----~~iD 64 (424)
|||||-|++ |--.|+|++|.+... +|++.--|..-. + .. ..+..|..|.+.+.+++++ -++|
T Consensus 1 mnVlITGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD 78 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKELGEVYAIKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9899975877899999999998799--99999799899999999987418879999636998999999999999859988
Q ss_pred EEE
Q ss_conf 999
Q gi|254780206|r 65 LVV 67 (424)
Q Consensus 65 lvi 67 (424)
..|
T Consensus 79 ~LV 81 (259)
T PRK08340 79 ALV 81 (259)
T ss_pred EEE
T ss_conf 899
No 155
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=87.44 E-value=2.4 Score=22.45 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=50.1
Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCCEEEEECCCHHH---H----HCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CC--
Q ss_conf 899886588-99999999858996789995498357---5----117055128789899999998718979999--79--
Q gi|254780206|r 3 VLLIGSGGR-EHALAWKIAQSPLLSELWSIPGNPGI---A----QHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GP-- 70 (424)
Q Consensus 3 ILviGsGgr-EhAl~~~l~~s~~~~~v~~~pgN~g~---~----~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gp-- 70 (424)
|||.|.-|. -.+++.+|.+... +|.+.--|+.. . .-.+.+..|..|.+.+.+..+ .+|.|+. ++
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g~--~Vr~l~R~~~~~~~~~l~~~gve~v~gD~~d~~sl~~al~--gvd~v~~~~~~~~ 76 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAGH--PVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVEALK--GVDVVFSVTGFWL 76 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHC--CCCEEEEECCCCC
T ss_conf 09989682899999999985899--3899971873665666641798899906888789999967--9988999158874
Q ss_pred CH--HHHHHHHHHHHHCCCCEEEC
Q ss_conf 55--78748998986058806701
Q gi|254780206|r 71 EL--PLVNGISDALNAAGFKVFGP 92 (424)
Q Consensus 71 E~--pL~~gi~d~l~~~gi~v~Gp 92 (424)
+. ....-+.|+..+.|++-|=+
T Consensus 77 ~~~~~~~~~~~~AA~~aGVk~~V~ 100 (232)
T pfam05368 77 SKEIEDGKKLADAAKEAGVKHFIP 100 (232)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 177999999999999739983455
No 156
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.39 E-value=2.4 Score=22.44 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=48.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH------HHHCC-EEEECCC-CCHHHHHHHHHHHCCCEEEECCCH
Q ss_conf 958998865889999999985899678999549835------75117-0551287-898999999987189799997955
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPG------IAQHA-QCVAIDI-QNHSAIIHFCQEKHIDLVVVGPEL 72 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g------~~~~~-~~~~i~~-~d~~~i~~~a~~~~iDlvivgpE~ 72 (424)
|||+|+|-|.---|.+.-|.+... +|++..+++. ...+. .-+.+.. .+.+.+. ..+|++|+.|-.
T Consensus 15 k~v~V~GlG~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~-----~~~d~vV~SPGI 87 (481)
T PRK01438 15 LRVVVAGLGVSGFPAADALHELGA--SVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLP-----EGTELVVTSPGW 87 (481)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHH-----CCCCEEEECCCC
T ss_conf 989999575889999999996799--8999979987448689998885498899688756662-----489999989978
Q ss_pred HHHHHHHHHHHHCCCCEEECCHHH
Q ss_conf 787489989860588067010666
Q gi|254780206|r 73 PLVNGISDALNAAGFKVFGPSQRA 96 (424)
Q Consensus 73 pL~~gi~d~l~~~gi~v~Gp~~~a 96 (424)
|...-+....++.|+|+++=-.-+
T Consensus 88 ~~~~p~~~~a~~~gi~i~~eiel~ 111 (481)
T PRK01438 88 RPTHPLLAAAAEAGIPVWGDVELA 111 (481)
T ss_pred CCCCHHHHHHHHCCCCEECHHHHH
T ss_conf 998999999998699386189999
No 157
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=87.13 E-value=2.5 Score=22.34 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=23.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 95899886588999999998589967899954
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIP 32 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~p 32 (424)
++|||---.+...+|+.+|.+.+. .++..|
T Consensus 4 ~rVLVTRP~~qa~~L~~~L~~~G~--~~~~~P 33 (255)
T PRK05752 4 WRLLLTRPAEDCAALAASLAEAGI--HSSSLP 33 (255)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCC--CEEECC
T ss_conf 789980977889999999997799--789728
No 158
>pfam02750 Synapsin_C Synapsin, ATP binding domain. Ca dependent ATP binding in this ATP grasp fold. Function unknown.
Probab=87.07 E-value=1.8 Score=23.37 Aligned_cols=145 Identities=13% Similarity=0.184 Sum_probs=74.2
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCCE
Q ss_conf 653101111223440111112101242025630465343000232356778887887514453177788775205-7523
Q gi|254780206|r 112 KYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGF-EVSF 190 (424)
Q Consensus 112 ~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~-E~Sv 190 (424)
+.+.|-..-..+.|..+ .+..-.||+|||--...+|-|-..++|..+..+...-++ -.+.-+-.|-|++.. .+.+
T Consensus 28 ~e~FPLIeQtyypn~ke---m~~~~~fPvVvKvGhah~G~GKvkven~~~fqD~~s~va-~~~~y~T~EPfid~kyDiri 103 (203)
T pfam02750 28 AEKFPLIEQTYYPNHKE---MLTTPTFPVVVKIGHAHSGMGKVKVDNHHDFQDIASVVA-LTKTYATTEPFIDSKYDIRV 103 (203)
T ss_pred CCCCCCCEEECCCCHHH---HCCCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHH-HCCCEEEECCCCCCCEEEEE
T ss_conf 66677530002698777---425889888999754156235899607778888875772-13635886145454255885
Q ss_pred EEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHC--CCEEEEEEEEEE
Q ss_conf 442157763103520001113-56654444434430000123443222010000089999986204--623566445448
Q gi|254780206|r 191 FALCDGKTAIPFTTARDHKRI-HDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKE--QNPFQGVLFAGL 267 (424)
Q Consensus 191 ~~i~dG~~~~~l~~~~dyKr~-~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~--~~~y~G~l~~~~ 267 (424)
+-| |.++..+ .|. -.++=--|||-+ .+ .+-.+.+--+.+++...+. |++ +.-++.
T Consensus 104 QKI--G~~ykay------~R~sISgnWK~NtGSa-------mL----Eqi~mteryK~WvD~~S~lFGGLd---Icav~a 161 (203)
T pfam02750 104 QKI--GNNYKAY------MRTSISGNWKANTGSA-------ML----EQIAMSERYKLWVDTCSEMFGGLD---ICAVEA 161 (203)
T ss_pred EEH--HHHHHHH------EECCCCCCCCCCCCHH-------HH----HHHHHHHHHHHHHHHHHHHCCCCE---EEEEEE
T ss_conf 200--0044766------1220037854470378-------88----650236899999999998738930---799987
Q ss_pred EEECCE-EEEEEEEEE
Q ss_conf 985570-489998865
Q gi|254780206|r 268 MITEQG-PYLIEYNVR 282 (424)
Q Consensus 268 m~t~~g-p~viE~N~R 282 (424)
+..++| -|++|+|--
T Consensus 162 i~~KdGkeyIiEvnds 177 (203)
T pfam02750 162 LHGKDGRDYIIEVMDS 177 (203)
T ss_pred EECCCCCEEEEEECCC
T ss_conf 7768887568996265
No 159
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=86.99 E-value=2.6 Score=22.28 Aligned_cols=135 Identities=20% Similarity=0.259 Sum_probs=81.7
Q ss_pred CEEEEECCCHHH--HHHHHHHHHCCCCCEEEE-ECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE---CCCHHH
Q ss_conf 958998865889--999999985899678999-54983575117055128789899999998718979999---795578
Q gi|254780206|r 1 MRVLLIGSGGRE--HALAWKIAQSPLLSELWS-IPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV---GPELPL 74 (424)
Q Consensus 1 MkILviGsGgrE--hAl~~~l~~s~~~~~v~~-~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv---gpE~pL 74 (424)
||+.++=|||.- +|+-|++.+...+..+.+ .|.|+ +..-...-|.+.+...|+--.+.++.. |.++-=
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~------dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~e 74 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENG------DSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEERE 74 (223)
T ss_pred CCEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCC------CEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf 96899981671889999999975983689999815998------704422225679999987448835998347630556
Q ss_pred HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHCCCCEE-EEEEC
Q ss_conf 748998986058806701066655520102357888765310--111122344011111210124202-56304
Q gi|254780206|r 75 VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP--TATYQHFSDPMKAKQYVQNKSMPI-VVKAD 145 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP--t~~~~~~~~~~ea~~~~~~~g~Pv-VVKp~ 145 (424)
+.-+.+.|+..++-.+... +.-.+--|.+...++.+.|+. +|-|. .|.++.....-+.||-+ ||+-+
T Consensus 75 ve~L~~~l~~l~~d~iv~G--aI~s~yqk~rve~lc~~lGl~~~~PLWg--~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLKVDGIVAG--AIASEYQKERVERLCEELGLKVYAPLWG--RDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHHCCCCEEEEC--HHHHHHHHHHHHHHHHHHCCEEEECCCC--CCHHHHHHHHHHCCCEEEEEEEE
T ss_conf 9999999973763379973--4330999999999999729788512517--89899999999739859999984
No 160
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=86.52 E-value=2.2 Score=22.79 Aligned_cols=134 Identities=22% Similarity=0.276 Sum_probs=72.2
Q ss_pred CEEEEECCCHHH--HHHHHHHHHCCCCCEE-EEECCCHHHH-HCCEEEECCCCCHHHHHHHHHHHCCCE---EEECCCHH
Q ss_conf 958998865889--9999999858996789-9954983575-117055128789899999998718979---99979557
Q gi|254780206|r 1 MRVLLIGSGGRE--HALAWKIAQSPLLSEL-WSIPGNPGIA-QHAQCVAIDIQNHSAIIHFCQEKHIDL---VVVGPELP 73 (424)
Q Consensus 1 MkILviGsGgrE--hAl~~~l~~s~~~~~v-~~~pgN~g~~-~~~~~~~i~~~d~~~i~~~a~~~~iDl---vivgpE~p 73 (424)
||+-|+=|||.- .||-|+|++...|..+ =+.|.|+-.- .+. .++.+++ =.|+...|=| =+-|-|+-
T Consensus 1 MkvAvLySGGKDS~~ALy~al~eG~eV~~LV~v~seN~eSyMfH~--pN~Hl~~-----l~AEavGiPL~klyt~GeeEk 73 (227)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEEGFEVKYLVGVISENEESYMFHV--PNVHLTD-----LVAEAVGIPLIKLYTSGEEEK 73 (227)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEC--HHHHHHH-----HHHHHCCCCHHHHHCCCCCCC
T ss_conf 906898518713689999998628854785100028898620534--2578999-----999761766256302786521
Q ss_pred HHHHHH---HHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCCCCC-HHHHHHHHCCCCEEEEEEC
Q ss_conf 874899---8986058806701066655520102357888765310-1111223440-1111121012420256304
Q gi|254780206|r 74 LVNGIS---DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP-TATYQHFSDP-MKAKQYVQNKSMPIVVKAD 145 (424)
Q Consensus 74 L~~gi~---d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP-t~~~~~~~~~-~ea~~~~~~~g~PvVVKp~ 145 (424)
=+..++ ..|.+.|+--+...+-.+ +--|..--.+|++.|+. .|+-+. .|. +-....++ .+|.+.|=..
T Consensus 74 EVedLag~l~~lderGvea~~~Ga~~S--~YQK~Rid~vCrelGlks~APLW~-~dPle~~~~~V~-e~F~v~iv~V 146 (227)
T TIGR00289 74 EVEDLAGQLEELDERGVEAVVIGAIES--EYQKSRIDKVCRELGLKSIAPLWH-KDPLEYLLEEVA-EKFEVIIVSV 146 (227)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCEEC--CHHHHHHHHHHHHHCCHHCCCCCC-CCHHHHHHHHHH-CCCEEEEEEE
T ss_conf 176662155445530545478853410--112335778877714100276013-481799999862-3360899999
No 161
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=86.39 E-value=2.7 Score=22.07 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=40.0
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCC-CEEEEECCCHH--HHHC-----CEEEECCCCC-------HHHHHHHHHHHCC
Q ss_conf 958998--8658899999999858996-78999549835--7511-----7055128789-------8999999987189
Q gi|254780206|r 1 MRVLLI--GSGGREHALAWKIAQSPLL-SELWSIPGNPG--IAQH-----AQCVAIDIQN-------HSAIIHFCQEKHI 63 (424)
Q Consensus 1 MkILvi--GsGgrEhAl~~~l~~s~~~-~~v~~~pgN~g--~~~~-----~~~~~i~~~d-------~~~i~~~a~~~~i 63 (424)
|||.|+ |+|.--.||..++.+.... +-+.+...|+. -... .....++..+ -++++++.+++++
T Consensus 1 mkiavl~SG~Gsnl~~Il~a~~~~~l~~~I~~Visn~~~~~~~~~a~~~~ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~ 80 (181)
T pfam00551 1 MKIAVLISGTGSNLQALLDALRKGGHEVEIVAVVTNKDKAAGLERAEQAGIPVEVFEHKNFTPRSQFDSELADSLAALAP 80 (181)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 98999990796659999999981999988999995895728888999859998980677899834618999999997499
Q ss_pred CEEEE
Q ss_conf 79999
Q gi|254780206|r 64 DLVVV 68 (424)
Q Consensus 64 Dlviv 68 (424)
|+++.
T Consensus 81 Dliv~ 85 (181)
T pfam00551 81 DLIVL 85 (181)
T ss_pred CEEEE
T ss_conf 99998
No 162
>PRK05693 short chain dehydrogenase; Provisional
Probab=86.32 E-value=2.8 Score=22.04 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=40.7
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHH-HH----CCEEEECCCCCHHHHHHHHHH-----HCCCEEE
Q ss_conf 958998865--8899999999858996789995498357-51----170551287898999999987-----1897999
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGI-AQ----HAQCVAIDIQNHSAIIHFCQE-----KHIDLVV 67 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~-~~----~~~~~~i~~~d~~~i~~~a~~-----~~iDlvi 67 (424)
|||-+|=++ |--.|++.+|.+... +|+..--|..- .. ....+..|.+|.+++.+++++ -++|..|
T Consensus 1 MKvvlITGassGIG~alA~~la~~G~--~V~~~~R~~~~l~~l~~~~~~~~~~Dvtd~~~i~~~~~~~~~~~g~iDiLV 77 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY--EVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHQGLDVLI 77 (274)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99899948885899999999998799--999997999999999848991899846998999999999999729976899
No 163
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=86.26 E-value=1.7 Score=23.49 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHCCCEEEE-CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8789899999998718979999-795578748998986058806701066655520102357888765310111122344
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHIDLVVV-GPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSD 125 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iDlviv-gpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~ 125 (424)
++.+.+.+..-.+++++|++|+ +|- | +.| ||+ -+|+++++.|||+---...-.
T Consensus 44 ~pe~~~~v~~~~~~~~pDf~i~isPN-~------------a~P--GP~-----------~ARE~l~~~~iP~IvI~D~p~ 97 (276)
T PRK00994 44 GPEEVERVVKKMKEWKPDFIIVISPN-P------------AAP--GPT-----------KAREILSAAGIPCIVIGDAPG 97 (276)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCC-C------------CCC--CCH-----------HHHHHHHHCCCCEEEECCCCC
T ss_conf 97899999999884089989997899-8------------899--956-----------799999756998899748853
Q ss_pred CHHHHHHHHC--CCCEEEEEECCCCCCCCCC
Q ss_conf 0111112101--2420256304653430002
Q gi|254780206|r 126 PMKAKQYVQN--KSMPIVVKADGLCAGKGVV 154 (424)
Q Consensus 126 ~~ea~~~~~~--~g~PvVVKp~~~agGkGV~ 154 (424)
.. .++.+++ +|| ++||+|-+-|-|--+
T Consensus 98 ~k-~kd~l~~~g~GY-Iivk~D~MIGARREF 126 (276)
T PRK00994 98 KK-KKDAMEEQGFGY-IIVKADPMIGARREF 126 (276)
T ss_pred HH-HHHHHHHCCCCE-EEEECCCCCCHHHHC
T ss_conf 31-488998649847-998367544312320
No 164
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=85.88 E-value=0.48 Score=27.55 Aligned_cols=37 Identities=24% Similarity=0.499 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHCCCC---EEEEEE
Q ss_conf 357888765310111122--3440111112101242---025630
Q gi|254780206|r 105 FAKKFCTKYGIPTATYQH--FSDPMKAKQYVQNKSM---PIVVKA 144 (424)
Q Consensus 105 ~~K~~l~~~gIPt~~~~~--~~~~~ea~~~~~~~g~---PvVVKp 144 (424)
.+|++|.++||+ |.. ++...|+.+++.++|| |||++-
T Consensus 14 mTKk~L~~~~i~---Fe~inid~~pea~d~vk~lGF~~~PVi~~~ 55 (72)
T TIGR02194 14 MTKKALEEHGIA---FEEINIDEQPEAVDYVKALGFRQVPVIVAE 55 (72)
T ss_pred HHHHHHHHCCCC---EEEEECCCCHHHHHHHHHCCCEECCEEEEC
T ss_conf 577667637996---157635888437899987486307626767
No 165
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.79 E-value=2.9 Score=21.86 Aligned_cols=66 Identities=26% Similarity=0.230 Sum_probs=40.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEE-CCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 58998865889999999985899678999549835751170551-2878989999999871897999979
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVA-IDIQNHSAIIHFCQEKHIDLVVVGP 70 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~-i~~~d~~~i~~~a~~~~iDlvivgp 70 (424)
||+|||-|=---.||.+|++.....+|+...-|+.+...+.... +|.. .+.+.+.+ ...|+||+.-
T Consensus 8 ~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~~-~~~~~e~~--~~~DlIilat 74 (307)
T PRK07502 8 RVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRARARELGLGDRV-TTSAAEAV--KGADLVILCV 74 (307)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCHH-CCCHHHHH--CCCCEEEEEC
T ss_conf 6899927879999999998549985799984999999999986997511-27776640--4589799917
No 166
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=85.22 E-value=1.8 Score=23.33 Aligned_cols=21 Identities=0% Similarity=-0.175 Sum_probs=10.1
Q ss_pred CCCCCHHHHHHHHHHHCCCEE
Q ss_conf 287898999999987189799
Q gi|254780206|r 46 IDIQNHSAIIHFCQEKHIDLV 66 (424)
Q Consensus 46 i~~~d~~~i~~~a~~~~iDlv 66 (424)
++..+++..++..+..++...
T Consensus 42 v~~~~l~~~i~~l~~~~~~G~ 62 (275)
T PRK00258 42 VPLDDLEDAVRGFFALGGKGA 62 (275)
T ss_pred CCHHHHHHHHHHHHHCCCCEE
T ss_conf 888899999997776698779
No 167
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.92 E-value=3.2 Score=21.58 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=25.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9589988658899999999858996789995
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSI 31 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~ 31 (424)
|||.|||+|+---|||+.|.+...-..+|.-
T Consensus 2 mkI~ViGaGawGtAlA~~la~n~~~V~lw~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAILLARNGHDVVLWGR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 8899989899999999999978997899983
No 168
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=84.88 E-value=3.2 Score=21.57 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=54.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC---CCHHHHHCCE-EEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 95899886588999999998589967899954---9835751170-5512878989999999871897999979557874
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIP---GNPGIAQHAQ-CVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~p---gN~g~~~~~~-~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
+|+-|||||---.-|..|+.+|+..+-++++- .-.|.....+ .+.....-++.+++ ...+|+||=...+.--.
T Consensus 2 ~~vAIiGsGnIGtDLm~Ki~rS~~le~~~~vG~dp~S~GL~rA~~lGv~~s~~Gid~ll~---~~~idiVFDATSA~aH~ 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLA---NPDIDIVFDATSAKAHA 78 (285)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHH---CCCCCEEEECCCHHHHH
T ss_conf 369998998338999999866787216999824889828999998499663768898960---99978899669846799
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 899898605880670
Q gi|254780206|r 77 GISDALNAAGFKVFG 91 (424)
Q Consensus 77 gi~d~l~~~gi~v~G 91 (424)
--+..|++.|+.++-
T Consensus 79 ~h~~~l~~~g~~~ID 93 (285)
T TIGR03215 79 RHARLLAELGKIVID 93 (285)
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999975997997
No 169
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=84.86 E-value=2 Score=23.00 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=43.5
Q ss_pred CEEEEECCCHHH-----------------HHHHHHHHHCCCCCEEEEECCCHHHHH-CCEE-EECCCCCHHHHHHHHHHH
Q ss_conf 958998865889-----------------999999985899678999549835751-1705-512878989999999871
Q gi|254780206|r 1 MRVLLIGSGGRE-----------------HALAWKIAQSPLLSELWSIPGNPGIAQ-HAQC-VAIDIQNHSAIIHFCQEK 61 (424)
Q Consensus 1 MkILviGsGgrE-----------------hAl~~~l~~s~~~~~v~~~pgN~g~~~-~~~~-~~i~~~d~~~i~~~a~~~ 61 (424)
|||||-++|-|| +|||..+.+-+. +|.+.-|...... ...+ -.+.....+++.+.+++.
T Consensus 1 ~kvLITaG~T~E~ID~VR~IsN~SSGk~G~aiA~~~~~~Ga--~Vtli~g~~~~~p~~~~~~~~i~v~ta~em~~~~~~~ 78 (228)
T PRK06732 1 MKILITSGGTTEPIDAVRGITNHSTGQLGKIIAETFLQAGH--EVTLVTTKTAVKPEPHPNLSIIEIENVDDLLATLKPL 78 (228)
T ss_pred CEEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 98999578876676884476767814999999999997899--8999956775688988985899945899999999974
Q ss_pred --CCCEEEECCCHHHHHHHHHH
Q ss_conf --89799997955787489989
Q gi|254780206|r 62 --HIDLVVVGPELPLVNGISDA 81 (424)
Q Consensus 62 --~iDlvivgpE~pL~~gi~d~ 81 (424)
+.|.+|- ++.++|+
T Consensus 79 ~~~~D~~I~------aAAVsDy 94 (228)
T PRK06732 79 VPHHDVLIH------SMAVSDY 94 (228)
T ss_pred CCCCCEEEE------EEEECCC
T ss_conf 789999999------3181015
No 170
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=84.67 E-value=1.9 Score=23.19 Aligned_cols=62 Identities=24% Similarity=0.371 Sum_probs=30.4
Q ss_pred EEEE-ECCCHHHHH--HHHHHHHCCCCCEEEEECCCHHHHHC-----CEEEEC------CCCCHHHHHHHHHHHCCCEEE
Q ss_conf 5899-886588999--99999858996789995498357511-----705512------878989999999871897999
Q gi|254780206|r 2 RVLL-IGSGGREHA--LAWKIAQSPLLSELWSIPGNPGIAQH-----AQCVAI------DIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 2 kILv-iGsGgrEhA--l~~~l~~s~~~~~v~~~pgN~g~~~~-----~~~~~i------~~~d~~~i~~~a~~~~iDlvi 67 (424)
+||+ |++--++.+ +++.|.+ .-.++|..+| |+.. .++..+ ...+...++++.++.+||+||
T Consensus 2 nVliSv~d~dK~~~l~~a~~l~~--lGf~l~AT~G---Ta~~l~~~Gi~~~~v~k~~e~~~~~~p~i~d~i~~g~i~lVI 76 (116)
T cd01423 2 GILISIGSYSKPELLPTAQKLSK--LGYKLYATEG---TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVI 76 (116)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHH--CCCEEEEEHH---HHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEEEE
T ss_conf 29999402038999999999998--7999998418---999999869965798786246789996699999769868999
Q ss_pred E
Q ss_conf 9
Q gi|254780206|r 68 V 68 (424)
Q Consensus 68 v 68 (424)
=
T Consensus 77 N 77 (116)
T cd01423 77 N 77 (116)
T ss_pred E
T ss_conf 8
No 171
>KOG1209 consensus
Probab=84.65 E-value=3.3 Score=21.50 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=37.5
Q ss_pred EEEEEC--CCHHHHHHHHHHHHCCCCCEEEE-ECCCHHHHHC-----CEEEECCCCCHHHHHHHHHHH
Q ss_conf 589988--65889999999985899678999-5498357511-----705512878989999999871
Q gi|254780206|r 2 RVLLIG--SGGREHALAWKIAQSPLLSELWS-IPGNPGIAQH-----AQCVAIDIQNHSAIIHFCQEK 61 (424)
Q Consensus 2 kILviG--sGgrEhAl~~~l~~s~~~~~v~~-~pgN~g~~~~-----~~~~~i~~~d~~~i~~~a~~~ 61 (424)
+|||.| +||.-|||+..+.+..- .||. +..-.-|.++ .+..-.|..+.+++.++-.+.
T Consensus 9 ~VlItgcs~GGIG~ala~ef~~~G~--~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~ev 74 (289)
T KOG1209 9 KVLITGCSSGGIGYALAKEFARNGY--LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEV 74 (289)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCE--EEEEECCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
T ss_conf 5999605776534999999986781--99997022460766788609705870568727789988888
No 172
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=84.59 E-value=2.3 Score=22.67 Aligned_cols=139 Identities=21% Similarity=0.247 Sum_probs=72.8
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCEEE---ECCCHHH----------HHHHHHHHHHC----CCCEEECCHHHHHHHHCCH
Q ss_conf 05512878989999999871897999---9795578----------74899898605----8806701066655520102
Q gi|254780206|r 42 QCVAIDIQNHSAIIHFCQEKHIDLVV---VGPELPL----------VNGISDALNAA----GFKVFGPSQRAAKLESSKS 104 (424)
Q Consensus 42 ~~~~i~~~d~~~i~~~a~~~~iDlvi---vgpE~pL----------~~gi~d~l~~~----gi~v~Gp~~~aa~le~sK~ 104 (424)
+..-+.--+...=-+.+++.+|+.-+ +|.+.+. +.-++|.+++. ++. |-+|+.|-|+|+.
T Consensus 95 qraal~~P~~~~tF~~vR~~aP~~~l~AN~GA~q~~~~~~~~g~~~~~~aid~i~AdAL~iHlN---~~QE~vqpEGDr~ 171 (349)
T TIGR02151 95 QRAALKDPEVAETFEVVREEAPNGPLIANIGAPQLVEGGKKYGVEEAQEAIDMIEADALAIHLN---VLQELVQPEGDRN 171 (349)
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCHH
T ss_conf 2221127124666999997679833787178788740653448899999998751013355432---3302557999701
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH---HH--CCCC--HHH
Q ss_conf 3578887653101111223440111112101242025630465343000232356778887887---51--4453--177
Q gi|254780206|r 105 FAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDR---CF--QQIN--STV 177 (424)
Q Consensus 105 ~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~---~~--~~~~--~~V 177 (424)
|.+.++.+. .+....+..|||||=.| -|+. ++.++...+- ++ ...+ +-+
T Consensus 172 F~~G~l~~i----------------~~~~~~~~vPVIvKEvG----~G~S----~e~a~~L~~~Gv~aiDv~G~GGTswa 227 (349)
T TIGR02151 172 FSKGWLEKI----------------AEICSAVSVPVIVKEVG----FGIS----KEVAKLLADAGVKAIDVSGAGGTSWA 227 (349)
T ss_pred HHHHHHHHH----------------HHHHHHCCCCEEEEECC----CCCC----HHHHHHHHHCCEEEEEECCCCCCCHH
T ss_conf 565389999----------------99996528987998215----7998----89999998789008870787675599
Q ss_pred HHHHHHHCCC----C--CEEEECC-CC-CCCCCCCCCC
Q ss_conf 7887752057----5--2344215-77-6310352000
Q gi|254780206|r 178 IIEEYLEGFE----V--SFFALCD-GK-TAIPFTTARD 207 (424)
Q Consensus 178 liEefl~G~E----~--Sv~~i~d-G~-~~~~l~~~~d 207 (424)
-||.+=-..+ + .-..|.| |- +.-.|--+|+
T Consensus 228 ~vE~~Rr~~~~~~~~~r~a~~f~~WGipT~~sL~~~~~ 265 (349)
T TIGR02151 228 AVENYRRAKESNQKYERLASAFSDWGIPTAASLLEVRS 265 (349)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99988751575235788877774148866899999864
No 173
>PRK00758 GMP synthase subunit A; Validated
Probab=84.19 E-value=3.4 Score=21.36 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=44.1
Q ss_pred EEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCHHHHHHH
Q ss_conf 58998865-88999999998589967899954983575117055128789899999998718979999--7955787489
Q gi|254780206|r 2 RVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPELPLVNGI 78 (424)
Q Consensus 2 kILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~pL~~gi 78 (424)
|||||-.| .--|-|++.|++-.. .+-+.|. ....+.+ .+ ++|.+|. ||+.+-+...
T Consensus 1 kIlviD~~dsft~ni~~~l~~~g~--~v~v~~~--------------~~~~~~i----~~-~~dgiilS~GP~~~~~~~~ 59 (184)
T PRK00758 1 KILVINNGGQYNHLIHRTLRYLGV--DAKIIPN--------------TTPLEEI----KA-EPDGIILSGGPEIERAGNC 59 (184)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--EEEEEEC--------------CCCHHHH----HH-CCCEEEECCCCCCCCCCCH
T ss_conf 999998986389999999997899--2899959--------------8989999----63-8998998899983332206
Q ss_pred HHHHHHCCCCEEECC
Q ss_conf 989860588067010
Q gi|254780206|r 79 SDALNAAGFKVFGPS 93 (424)
Q Consensus 79 ~d~l~~~gi~v~Gp~ 93 (424)
.+.+.+.++|++|=.
T Consensus 60 ~~~i~~~~iPiLGIC 74 (184)
T PRK00758 60 EEYLLELDVPILGIC 74 (184)
T ss_pred HHHHHHCCCCEEEEE
T ss_conf 999986599889971
No 174
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=83.93 E-value=3.2 Score=21.58 Aligned_cols=13 Identities=38% Similarity=0.399 Sum_probs=6.9
Q ss_pred CCCEEECCHHHHH
Q ss_conf 8806701066655
Q gi|254780206|r 86 GFKVFGPSQRAAK 98 (424)
Q Consensus 86 gi~v~Gp~~~aa~ 98 (424)
|+.|--|-|+++.
T Consensus 62 G~NVTiP~Ke~~~ 74 (283)
T COG0169 62 GLNVTIPFKEAAL 74 (283)
T ss_pred EEEECCCCHHHHH
T ss_conf 1698775688899
No 175
>COG2403 Predicted GTPase [General function prediction only]
Probab=83.85 E-value=3.5 Score=21.26 Aligned_cols=94 Identities=28% Similarity=0.459 Sum_probs=56.9
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEE----EECCCHH------HH--HCCEEEEC-CCCCHHHHHHHHHHHCCCEE
Q ss_conf 958998865889-99999998589967899----9549835------75--11705512-87898999999987189799
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELW----SIPGNPG------IA--QHAQCVAI-DIQNHSAIIHFCQEKHIDLV 66 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~----~~pgN~g------~~--~~~~~~~i-~~~d~~~i~~~a~~~~iDlv 66 (424)
|+|+++|.|||- |-.-|++..++..+.+- ..||-++ .+ .....++| ...|++.+.++++++.+|.+
T Consensus 7 kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire~~VD~~ 86 (449)
T COG2403 7 KRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIREKDVDIV 86 (449)
T ss_pred EEEEEEECCCCCCCHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 26999950675662246786068752478889988327766538997011323378330466468999999987076616
Q ss_pred EEC-----CCHHHHHHHHHHHHHCC--CCEEECCHHH
Q ss_conf 997-----95578748998986058--8067010666
Q gi|254780206|r 67 VVG-----PELPLVNGISDALNAAG--FKVFGPSQRA 96 (424)
Q Consensus 67 ivg-----pE~pL~~gi~d~l~~~g--i~v~Gp~~~a 96 (424)
+.. +|. .--++..+-++| +..|||....
T Consensus 87 VlaySDvs~e~--v~~IaS~vLs~GA~f~~~gP~et~ 121 (449)
T COG2403 87 VLAYSDVSYEH--VFRIASRVLSAGADFKELGPKETM 121 (449)
T ss_pred EEECCCCCHHH--HHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 87701289899--878999997478536872752776
No 176
>KOG2158 consensus
Probab=83.76 E-value=1 Score=25.12 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=38.2
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 87653101111223440111112101242025630465343000232356778
Q gi|254780206|r 110 CTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEA 162 (424)
Q Consensus 110 l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~ 162 (424)
=+++.+-+-.|..=..+.++.++.+....|.++|||+.+.|.|++...+..+.
T Consensus 199 peey~fyp~sw~lPa~l~df~a~~~~~KrtfivkpDsgaqg~giylisDir~~ 251 (565)
T KOG2158 199 PEEYMFYPTSWRLPAPLCDFPASTEIMKRTFIVKPDSGAQGSGIYLISDIREK 251 (565)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEECHHHHH
T ss_conf 48756777533376577777999997406578788888777640552022221
No 177
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=83.76 E-value=1.6 Score=23.72 Aligned_cols=72 Identities=19% Similarity=0.392 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 89899999998718979999795578748998986058806701066655520102357888765310111122344011
Q gi|254780206|r 49 QNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMK 128 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~e 128 (424)
.+.+.+.+++.+++|+.+|+|- |+ ...|- ...+-+.-+.|++.+-++.++|.--+..--+-.+
T Consensus 38 ~~~~~i~~ii~e~~i~~iVvGl--P~--------~~dG~-------~~~~~~~v~~f~~~L~~~~~i~v~~~DEr~TS~~ 100 (134)
T pfam03652 38 PDLEELAELIKEWQPDGIVVGL--PL--------NMDGS-------EGEQTKRVRKFARRLKKRFGLPVELVDERLTTVE 100 (134)
T ss_pred HHHHHHHHHHHHHCCCEEEEEC--CC--------CCCCC-------CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
T ss_conf 8999999999983999899955--89--------99988-------0889999999999999861998688634327999
Q ss_pred HHHHHHCCC
Q ss_conf 111210124
Q gi|254780206|r 129 AKQYVQNKS 137 (424)
Q Consensus 129 a~~~~~~~g 137 (424)
|.+.+.+.+
T Consensus 101 A~~~l~~~~ 109 (134)
T pfam03652 101 AERILREAG 109 (134)
T ss_pred HHHHHHHCC
T ss_conf 999999737
No 178
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=83.76 E-value=3.6 Score=21.24 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=34.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEE-CCCHHHHHCCEEE-----ECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 589988658899999999858996789995-4983575117055-----12878989999999871897999
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSI-PGNPGIAQHAQCV-----AIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~-pgN~g~~~~~~~~-----~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
+|||||-||--..++.-|..+. +.++.++ ++.-....+...+ .+-..-.+...+..++.+++.-|
T Consensus 34 ~VlivG~GGlG~~~~~~La~aG-vg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i 104 (245)
T PRK05690 34 RVLVVGLGGLGCAAAQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAI 104 (245)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 7899877777899999999859-9659999688678886788864598778988799999999975887522
No 179
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=83.68 E-value=1.6 Score=23.78 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf 12234401111121012420256304
Q gi|254780206|r 120 YQHFSDPMKAKQYVQNKSMPIVVKAD 145 (424)
Q Consensus 120 ~~~~~~~~ea~~~~~~~g~PvVVKp~ 145 (424)
|-.=+|.|.|--++...|+.+||-|+
T Consensus 72 FGcGSSREHApwALk~~Gi~~VIA~S 97 (191)
T COG0066 72 FGCGSSREHAPWALKDYGIRAVIAPS 97 (191)
T ss_pred CCCCCCHHHHHHHHHHCCEEEEEECC
T ss_conf 77885277899999975924999362
No 180
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=83.32 E-value=3.7 Score=21.12 Aligned_cols=35 Identities=9% Similarity=0.221 Sum_probs=17.9
Q ss_pred HHHHHHHHHH--CCC-CCCC--CCCHHHHHHHHCCCCEEE
Q ss_conf 7888765310--111-1223--440111112101242025
Q gi|254780206|r 107 KKFCTKYGIP--TAT-YQHF--SDPMKAKQYVQNKSMPIV 141 (424)
Q Consensus 107 K~~l~~~gIP--t~~-~~~~--~~~~ea~~~~~~~g~PvV 141 (424)
|+.+++.|+- +|+ +... .......+|++.+|.|.+
T Consensus 93 k~~~e~~g~~~~~P~~~CsL~~~~~p~i~~F~~~FG~P~~ 132 (215)
T pfam02593 93 KEQLEEFGVEVEFPEPFCSLEPVGNPVIDEFAERFGRPEL 132 (215)
T ss_pred HHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 9999975973877876557889888669999998199669
No 181
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=83.24 E-value=3.7 Score=21.10 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=69.8
Q ss_pred EEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHH----HHCCEEEE----CCCCCHHHHHHHHHHHCCCEEEECCC
Q ss_conf 58998865--8899999999858996789995498357----51170551----28789899999998718979999795
Q gi|254780206|r 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGI----AQHAQCVA----IDIQNHSAIIHFCQEKHIDLVVVGPE 71 (424)
Q Consensus 2 kILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~----~~~~~~~~----i~~~d~~~i~~~a~~~~iDlvivgpE 71 (424)
||||+|-| ||--|++.=|.+... .+++...-+.. ........ ....+.. +.-..+++|+||.-|=
T Consensus 1 ~i~i~GlG~tG~G~a~a~~L~~~g~--~~~~~D~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~d~vv~SPG 75 (476)
T TIGR01087 1 KILILGLGKTGRGVAVARFLKKKGA--EVTVTDDDPEEELERSKGQLKLSEGVVLYTGGKD---DLEDLNNADLVVLSPG 75 (476)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCC--EEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCC---CCCCCCCCEEEEECCC
T ss_conf 9789986751078999999997298--7999984522134311331245564135326753---1012334207997898
Q ss_pred HHHHHHHHHHHHHCCCCEEECCHHHHHHHH----CCH--------------HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 578748998986058806701066655520----102--------------357888765310111122344
Q gi|254780206|r 72 LPLVNGISDALNAAGFKVFGPSQRAAKLES----SKS--------------FAKKFCTKYGIPTATYQHFSD 125 (424)
Q Consensus 72 ~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~----sK~--------------~~K~~l~~~gIPt~~~~~~~~ 125 (424)
.|...-+...+.+.|+||.|==.-+.++.. .|. +...+|++.|++++-.-.+..
T Consensus 76 i~~~hp~~~~a~~~g~~v~gdi~L~~~~~~~~~~~~~~aITGTnGKtTTT~L~~~~L~~~G~~a~~gGNIG~ 147 (476)
T TIGR01087 76 IPPDHPLVQAAAKRGIPVVGDIELALRLVDFPEPAKVVAITGTNGKTTTTSLLYHLLKAAGLKAVLGGNIGT 147 (476)
T ss_pred CCCCCHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 986777999999669808986799997415789873799972686079999999999846997786257881
No 182
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.16 E-value=3.8 Score=21.07 Aligned_cols=82 Identities=12% Similarity=0.200 Sum_probs=45.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHH----HHCC-EEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 589988658899999999858996789995498357----5117-05512878989999999871897999979557874
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGI----AQHA-QCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~----~~~~-~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
||+|+|-|----|.+..|++- . .+++..+.... .... ........+. .-.++|++|+.|-.|+..
T Consensus 8 ~v~V~GlG~sG~a~~~~L~~~--~-~~~~~dd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~iV~SPGI~~~~ 77 (450)
T PRK01368 8 KIGVFGLGKTGISVYEELQNK--Y-DLIVYDDLKANRDIFEELFSKNAIIALSDS-------RWQNLDKIVLSPGIPLTH 77 (450)
T ss_pred EEEEEEECHHHHHHHHHHHHC--C-CEEEEECCCCCHHHHHHHHCCCCEECCCCC-------CHHCCCEEEECCCCCCCC
T ss_conf 089995878799999999719--9-989998996564789975214836025711-------152199999899619989
Q ss_pred HHHHHHHHCCCCEEECC
Q ss_conf 89989860588067010
Q gi|254780206|r 77 GISDALNAAGFKVFGPS 93 (424)
Q Consensus 77 gi~d~l~~~gi~v~Gp~ 93 (424)
-+...+++.|+|+++=-
T Consensus 78 p~~~~a~~~~i~i~~ei 94 (450)
T PRK01368 78 EIVKIAKNFNIPITSDI 94 (450)
T ss_pred HHHHHHHHCCCCEEEHH
T ss_conf 99999998799587699
No 183
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=83.15 E-value=3.8 Score=21.07 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=39.9
Q ss_pred CEEEEECCCHH-HHHHHHHHHHCCCCCEEEEEC--C-CHH-HHH-CCEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 95899886588-999999998589967899954--9-835-751-1705512878989999999871897999
Q gi|254780206|r 1 MRVLLIGSGGR-EHALAWKIAQSPLLSELWSIP--G-NPG-IAQ-HAQCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgr-EhAl~~~l~~s~~~~~v~~~p--g-N~g-~~~-~~~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
|||||.|+.|. -..|+..|.+... +|.+.- . +.. ... -.+.+.-|..|.+.+.+..+ .+|.||
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~~~--~~d~Vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERGE--EVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKALA--GCRALF 69 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHH--CCCEEE
T ss_conf 9499986777999999999997849--89999899986556521797799820799999999971--785897
No 184
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=83.10 E-value=2.5 Score=22.40 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=5.3
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 99999871897999
Q gi|254780206|r 54 IIHFCQEKHIDLVV 67 (424)
Q Consensus 54 i~~~a~~~~iDlvi 67 (424)
+.+...+.++|.+|
T Consensus 48 ~~~~l~~~~vdGiI 61 (270)
T cd01545 48 VRALLQRSRVDGVI 61 (270)
T ss_pred HHHHHHHCCCCEEE
T ss_conf 99999966999899
No 185
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=82.93 E-value=3.8 Score=21.03 Aligned_cols=79 Identities=22% Similarity=0.377 Sum_probs=43.4
Q ss_pred CCHHHHH-HHHHHHCCCEEEE-CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8989999-9998718979999-7955787489989860588067010666555201023578887653101111223440
Q gi|254780206|r 49 QNHSAII-HFCQEKHIDLVVV-GPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDP 126 (424)
Q Consensus 49 ~d~~~i~-~~a~~~~iDlviv-gpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~ 126 (424)
.+.+.+. +..++.++|++|+ +|- | ..| ||+ -+|+++++.|||+---...-..
T Consensus 45 e~~e~~~~~~l~~~~pDf~i~isPN-~------------a~P--GP~-----------~ARE~l~~~giP~IvI~D~p~~ 98 (276)
T pfam01993 45 ECVEEVVLDMLEEFEPDFVIYISPN-P------------AAP--GPK-----------KAREMLSDSGYPAVIIGDAPGL 98 (276)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCC-C------------CCC--CCH-----------HHHHHHHHCCCCEEEECCCCCH
T ss_conf 8899999999986189989997899-8------------899--956-----------7999997569987998378633
Q ss_pred HHHHHHHHCCCCE-EEEEECCCCCCCCCC
Q ss_conf 1111121012420-256304653430002
Q gi|254780206|r 127 MKAKQYVQNKSMP-IVVKADGLCAGKGVV 154 (424)
Q Consensus 127 ~ea~~~~~~~g~P-vVVKp~~~agGkGV~ 154 (424)
.+++.+++.||- ++||+|-+-|-|--+
T Consensus 99 -K~kd~l~~~g~GYIivk~D~MIGARREF 126 (276)
T pfam01993 99 -KVKDEMEEQGLGYILVKADPMIGARREF 126 (276)
T ss_pred -HHHHHHHHCCCCEEEEECCCCCCHHHHC
T ss_conf -2589998659847998367644312320
No 186
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829 Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=82.83 E-value=3.8 Score=21.01 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=72.6
Q ss_pred CCHHHHH-C---CEEEECCCCCHHHHHHHHHHHCCCEEE-ECCCHHHHHHHHHHHHHCC-CCEEECCHHHH--HHHHCCH
Q ss_conf 9835751-1---705512878989999999871897999-9795578748998986058-80670106665--5520102
Q gi|254780206|r 33 GNPGIAQ-H---AQCVAIDIQNHSAIIHFCQEKHIDLVV-VGPELPLVNGISDALNAAG-FKVFGPSQRAA--KLESSKS 104 (424)
Q Consensus 33 gN~g~~~-~---~~~~~i~~~d~~~i~~~a~~~~iDlvi-vgpE~pL~~gi~d~l~~~g-i~v~Gp~~~aa--~le~sK~ 104 (424)
.||.-.+ . .+.+..|.+ +.+++-+++.++|-.| ||-|..| +++..|.+.| +||+|=+|.-- -.++|-.
T Consensus 75 ~NPF~~~~~~~~G~~v~~DvS--d~~~~n~~~~GlDAlIaIGGdGTL--~~A~~l~~~GGl~vVGVPKTIDNDl~~TD~T 150 (339)
T TIGR02483 75 TNPFKYEEDGEDGKTVVRDVS--DKIVANLKELGLDALIAIGGDGTL--GIARRLADKGGLPVVGVPKTIDNDLEATDYT 150 (339)
T ss_pred CCCCCCCCCCCCCCEEEEECC--HHHHHHHHHCCCEEEEEECCCCHH--HHHHHHHHCCCCCEEEECCCCCCCCCCCCCE
T ss_conf 787420010579827997320--899998996498189986687268--9999999658985474157754675324402
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEE-----------ECCCCCCCCCCCH----HHHHHHHHHHHHH
Q ss_conf 357888765310111122344011111210124202563-----------0465343000232----3567788878875
Q gi|254780206|r 105 FAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK-----------ADGLCAGKGVVVA----ATVDEATSAIDRC 169 (424)
Q Consensus 105 ~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVK-----------p~~~agGkGV~i~----~~~~e~~~~~~~~ 169 (424)
|- .-||..-..+-.+-+..-++++..=.||= -+|+|||=-|.++ .|.++.-+.+++.
T Consensus 151 FG--------FDTAv~iATEAlDRLhtTAeSH~RVmVvEVMGRhAGWIAL~sG~aGGAd~ILIPE~P~d~~~v~~~v~~r 222 (339)
T TIGR02483 151 FG--------FDTAVEIATEALDRLHTTAESHHRVMVVEVMGRHAGWIALHSGIAGGADVILIPEIPFDIDSVCEKVRER 222 (339)
T ss_pred EC--------CCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 22--------1007899999875240058731948999984854579998843520876789786048889999999999
Q ss_pred HC
Q ss_conf 14
Q gi|254780206|r 170 FQ 171 (424)
Q Consensus 170 ~~ 171 (424)
+.
T Consensus 223 ~~ 224 (339)
T TIGR02483 223 FA 224 (339)
T ss_pred HH
T ss_conf 87
No 187
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.82 E-value=3.9 Score=20.98 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=55.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCC-EEEECCCCCHHHHHHHHHHHCCCEEEEC-CC--HHHHHH
Q ss_conf 5899886588999999998589967899954983575117-0551287898999999987189799997-95--578748
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHA-QCVAIDIQNHSAIIHFCQEKHIDLVVVG-PE--LPLVNG 77 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~-~~~~i~~~d~~~i~~~a~~~~iDlvivg-pE--~pL~~g 77 (424)
++||+|.|.-.-.|++++++++...-|-+...++- ... +...+...-..++.+++++.+++.+++. |. ..-..-
T Consensus 118 r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~--~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~~~~ 195 (588)
T COG1086 118 RLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPD--LTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEERRR 195 (588)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH--HCCCEEECEEEECHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 66999376589999999974899615999888736--5188770226423147999999718766999648788999999
Q ss_pred HHHHHHHCCCCEE
Q ss_conf 9989860588067
Q gi|254780206|r 78 ISDALNAAGFKVF 90 (424)
Q Consensus 78 i~d~l~~~gi~v~ 90 (424)
+.+.+.+.|+.|-
T Consensus 196 i~~~l~~~~~~v~ 208 (588)
T COG1086 196 ILLRLARTGIAVR 208 (588)
T ss_pred HHHHHHHCCCCEE
T ss_conf 9999875597078
No 188
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=82.36 E-value=4 Score=20.86 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=25.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 958998865889999999985899678999
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWS 30 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~ 30 (424)
+||.|||+|.--.||+..|.+......+|.
T Consensus 1 kKI~IiGaG~wGtAla~~la~n~~~V~l~~ 30 (159)
T pfam01210 1 KKIAVLGAGSWGTALAKVLARNGHEVRLWG 30 (159)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 989999969999999999998799899999
No 189
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase; InterPro: IPR005766 delta l-pyrroline-5-carboxylate synthetase contains a glutamate 5-kinase (ProB, 2.7.2.11 from EC) region followed by a gamma-glutamyl phosphate reductase (ProA, 1.2.1.41 from EC) region and catalyses the first and second steps in proline biosynthesis.; GO: 0003824 catalytic activity, 0006561 proline biosynthetic process.
Probab=82.34 E-value=0.94 Score=25.44 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=4.2
Q ss_pred EEEEEEEEEEC
Q ss_conf 64454489855
Q gi|254780206|r 261 GVLFAGLMITE 271 (424)
Q Consensus 261 G~l~~~~m~t~ 271 (424)
|--|+++|+|+
T Consensus 636 GSaHTD~IvtE 646 (738)
T TIGR01092 636 GSAHTDVIVTE 646 (738)
T ss_pred CCCCCCEEEEC
T ss_conf 88424557846
No 190
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.29 E-value=1.8 Score=23.35 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=48.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH---HHHC---CEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 58998865889999999985899678999549835---7511---70551287898999999987189799997955787
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPG---IAQH---AQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g---~~~~---~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
++||+|-|+---+++.-|.+... +|++...+.. ...+ ...+.+..-+.+ .++ -.+.|++|+.|-.|..
T Consensus 9 ~~LV~G~G~sG~s~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~--~~~--~~~~d~vv~SPgI~~~ 82 (448)
T PRK03803 9 LRIVVGLGKSGMSLVRFLARQGY--QFAVTDTRENPPELATLRRDYPQVEVRCGELD--AEF--LCQAEEIIVSPGLALA 82 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHCCCCEEEECCCC--HHH--HCCCCEEEECCCCCCC
T ss_conf 58999989999999999997889--59999189991679999974799779978889--778--0789999989972999
Q ss_pred HHHHHHHHHCCCCEEECCHHH
Q ss_conf 489989860588067010666
Q gi|254780206|r 76 NGISDALNAAGFKVFGPSQRA 96 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~Gp~~~a 96 (424)
.-....+.+.|+|+++-..-.
T Consensus 83 ~p~~~~a~~~~i~i~~e~el~ 103 (448)
T PRK03803 83 TPALQAAAAAGIKISGDIELF 103 (448)
T ss_pred CHHHHHHHHCCCCEECHHHHH
T ss_conf 999999998599683199998
No 191
>pfam03054 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.
Probab=82.17 E-value=4.1 Score=20.82 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=69.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCC--EEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 95899886588999999998589967--8999549835751170551287898999999987189799997955787489
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLS--ELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~--~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi 78 (424)
|||+|--|||---+.+-.|.+....+ -++.-.-.........| -...|.....+.|.+..|.+-++--++.....|
T Consensus 1 mkV~VamSGGVDSsVaA~LL~~~Gy~V~Gv~m~~w~~~~~~~~~C--~~~~d~~dA~~va~~LgIp~~v~d~~~~f~~~V 78 (354)
T pfam03054 1 MKVVVAMSGGVDSSVAAYLLKEQGYEVIGVFMKNWDEEDEFGHGC--CSEEDLADAQRVCEQLGIPLYVVNFEKEYWEKV 78 (354)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
T ss_conf 969999047899999999999779963999999566887667889--988999999999998699789978799875899
Q ss_pred HHHHHH---CCCCEEECCHHHHHHHHCCHHHHHHHHHH----H---HHCCCCCCCCCCHHHHHHHHCCCCEEEEEECC
Q ss_conf 989860---58806701066655520102357888765----3---10111122344011111210124202563046
Q gi|254780206|r 79 SDALNA---AGFKVFGPSQRAAKLESSKSFAKKFCTKY----G---IPTATYQHFSDPMKAKQYVQNKSMPIVVKADG 146 (424)
Q Consensus 79 ~d~l~~---~gi~v~Gp~~~aa~le~sK~~~K~~l~~~----g---IPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~ 146 (424)
.|.|-+ .|.+ |+... ++..+.....|++.+ | |.|--|..... .-+.+.+.++.+
T Consensus 79 i~~fv~~Y~~G~T---PNPcv--~CN~~IKFg~l~~~A~~~lGad~iATGHYAri~~---------~~~~~~L~r~~D 142 (354)
T pfam03054 79 FEPFLDEYKNGRT---PNPDI--LCNREIKFGALLDYAKQVLGADYLATGHYARVSL---------NENESELLRGKD 142 (354)
T ss_pred HHHHHHHHHCCCC---CCCCH--HHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEE---------CCCEEEEEECCC
T ss_conf 9999999976999---98414--4189643899999999866998104474289990---------499389998999
No 192
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=82.13 E-value=4.1 Score=20.81 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=14.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 958998865889999999985899
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPL 24 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~ 24 (424)
.+|||+|+|.-.-.=+..|.+...
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga 36 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGA 36 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 779998998999999999974699
No 193
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=81.94 E-value=2.1 Score=22.88 Aligned_cols=71 Identities=24% Similarity=0.419 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 98999999987189799997955787489989860588067010666555201023578887653101111223440111
Q gi|254780206|r 50 NHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKA 129 (424)
Q Consensus 50 d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea 129 (424)
+.+.+.+++++++|+.+|+|- |+ ...|- ...+-+.-+.|++.+-++.++|.--+..--+-.+|
T Consensus 42 ~~~~l~~ii~e~~i~~iViGl--P~--------~~~g~-------~~~~~~~v~~F~~~L~~~~~l~v~~~DEr~TS~~A 104 (141)
T PRK00109 42 DWDALEKLLKEWQPDLLVVGL--PL--------NMDGT-------EGPMTERARKFANRLEGRFGLPVELVDERLTTVEA 104 (141)
T ss_pred HHHHHHHHHHHHCCCEEEEEC--CC--------CCCCC-------CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 999999999983999899944--79--------99988-------44889999999999999729987986243279999
Q ss_pred HHHHHCCC
Q ss_conf 11210124
Q gi|254780206|r 130 KQYVQNKS 137 (424)
Q Consensus 130 ~~~~~~~g 137 (424)
.+.+.+.+
T Consensus 105 ~~~l~~~~ 112 (141)
T PRK00109 105 ERMLFEAG 112 (141)
T ss_pred HHHHHHCC
T ss_conf 99999736
No 194
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.70 E-value=2.9 Score=21.85 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=24.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 958998865889999999985899678999549
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPG 33 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pg 33 (424)
|||+|||.|+---.+++.|+++.. +-.+++.+
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~ag~-~V~li~r~ 32 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQAGH-DVTLVARG 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 989999914999999999984899-88999788
No 195
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=81.61 E-value=4.3 Score=20.68 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=43.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEE-ECCCHHHHHHHHH
Q ss_conf 589988658899999999858996789995498357511705512878989999999871897999-9795578748998
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVV-VGPELPLVNGISD 80 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvi-vgpE~pL~~gi~d 80 (424)
.|||.==-++-.+|+.+|.+.+. .+...| .-.+. ..+.. +..-.+.+-.+-|.+| +.|-+- ....+
T Consensus 18 tvLvTRP~~q~~~L~~~L~~aG~--~~i~lP----~l~I~---~~~~~--~~~~~l~~~~~~d~vIFVS~nAV--~~a~~ 84 (264)
T PRK08811 18 TLISLRPSGEHAALRRAVARHGG--RLLALS----PWRLQ---RLDTA--QARDALRQALAAPIVVFTSPAAV--QAAHR 84 (264)
T ss_pred EEEEECCHHHHHHHHHHHHHCCC--CEEECC----HHHCC---CCCCC--HHHHHHHHHHCCCEEEEECHHHH--HHHHH
T ss_conf 89995855567999999998799--778467----00046---79960--47999986423999999858999--99997
Q ss_pred HH---HHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 98---60588067010666555201023578887653101
Q gi|254780206|r 81 AL---NAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT 117 (424)
Q Consensus 81 ~l---~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt 117 (424)
.+ .-.++++++-.+.++ +.|+++|++.
T Consensus 85 ~l~~~~p~~~~~~aVG~~TA----------~~L~~~g~~~ 114 (264)
T PRK08811 85 LLPLQRPARAHWLSVGEGTA----------RALQACGIDR 114 (264)
T ss_pred HHHCCCCCCCEEEEECHHHH----------HHHHHCCCCC
T ss_conf 54212788985999989999----------9999759985
No 196
>PRK08309 short chain dehydrogenase; Provisional
Probab=81.51 E-value=4.3 Score=20.65 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=38.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCH-HHHH---------CCEEEECCCCCHHHHHH----HHHHHC-CCE
Q ss_conf 95899886588999999998589967899954983-5751---------17055128789899999----998718-979
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNP-GIAQ---------HAQCVAIDIQNHSAIIH----FCQEKH-IDL 65 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~-g~~~---------~~~~~~i~~~d~~~i~~----~a~~~~-iDl 65 (424)
|..||||+-|==--...-|.+.+ .+|.++--++ -+.. ...++..|..|.+++.+ ..+++. +|+
T Consensus 1 mhaLVIGGTGML~~vs~~L~~qg--~~VsiiaR~~~kl~~~~~~~~~p~~i~~l~~DY~d~~~l~~~l~~ai~q~Gp~dl 78 (182)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEEG--FHVSIIARDEVKLENVKRESGTPESITCLPLDYHDDDAVKLAIKRTIEQNGPITL 78 (182)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 91699724175599999997379--9999994487886536862379863257874648869999999999961898568
Q ss_pred EEEC-----CCHHHHHHHHHHHHHC
Q ss_conf 9997-----9557874899898605
Q gi|254780206|r 66 VVVG-----PELPLVNGISDALNAA 85 (424)
Q Consensus 66 vivg-----pE~pL~~gi~d~l~~~ 85 (424)
+|.. ++++.+ +++.+...
T Consensus 79 ~VaWiHssa~~al~~--v~~~l~~~ 101 (182)
T PRK08309 79 AVAWIHSSAKDALSV--VCRELDLS 101 (182)
T ss_pred EEEEEECCCHHHHHH--HHHHHHCC
T ss_conf 999983572245999--99998548
No 197
>TIGR00018 panC pantoate--beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis . Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway .; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process.
Probab=81.46 E-value=3.6 Score=21.19 Aligned_cols=137 Identities=18% Similarity=0.301 Sum_probs=82.5
Q ss_pred HHHH-HHH-CCCCCEEEEECCCHHHHHCCEEEEC--CCCCHHHHHHHHHHHCCCEEEE------CCC-HHHHHHHHHHHH
Q ss_conf 9999-985-8996789995498357511705512--8789899999998718979999------795-578748998986
Q gi|254780206|r 15 LAWK-IAQ-SPLLSELWSIPGNPGIAQHAQCVAI--DIQNHSAIIHFCQEKHIDLVVV------GPE-LPLVNGISDALN 83 (424)
Q Consensus 15 l~~~-l~~-s~~~~~v~~~pgN~g~~~~~~~~~i--~~~d~~~i~~~a~~~~iDlviv------gpE-~pL~~gi~d~l~ 83 (424)
|+.+ .++ +.-+-+|||-| - +++.+-++ -+.|++.=+++|++.++|.+|. +|. .||- .+
T Consensus 43 L~~~a~~End~vvvSIFVNP---~--QFgp~EDl~~YPR~l~~D~~l~E~lgVd~~FaP~~~~mYP~~~Pld------ie 111 (310)
T TIGR00018 43 LIDRAVKENDLVVVSIFVNP---L--QFGPNEDLEAYPRDLEEDLALLEKLGVDVVFAPKVHEMYPDGAPLD------IE 111 (310)
T ss_pred HHHHHHHHCCEEEEEEEECC---C--CCCCCCCHHHCCCCHHHHHHHHHHCCCCEEECCCCEEECCCCCCCC------CC
T ss_conf 99999866885899997578---7--8888754544579858999999838965885572144078862321------13
Q ss_pred HCCCCEEECCHHHHHHHHC--CHHHHHH----HHHHHH--HCCCCCCCCCCHHH---HHHHHCCCC-------EEEEEEC
Q ss_conf 0588067010666555201--0235788----876531--01111223440111---112101242-------0256304
Q gi|254780206|r 84 AAGFKVFGPSQRAAKLESS--KSFAKKF----CTKYGI--PTATYQHFSDPMKA---KQYVQNKSM-------PIVVKAD 145 (424)
Q Consensus 84 ~~gi~v~Gp~~~aa~le~s--K~~~K~~----l~~~gI--Pt~~~~~~~~~~ea---~~~~~~~g~-------PvVVKp~ 145 (424)
+...++.-|...+..|||- +.+.+-. .|=.+| ||-.|.--.|.+++ ..-++.+.+ |+|=--|
T Consensus 112 E~~~~~~~p~~ls~~LeGa~RpGHF~GVa~iVtKLFnlV~Pd~AYFG~KD~QQla~i~~lV~Dl~~di~i~~~~iVR~~d 191 (310)
T TIGR00018 112 EQKTTVLVPKALSEVLEGASRPGHFRGVATIVTKLFNLVKPDVAYFGKKDAQQLAVIRKLVKDLFLDIEIVPVPIVREED 191 (310)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
T ss_conf 75447861765410016789868234202545410031674510047743889999999998734630876330563488
Q ss_pred CCC-CCCCCCCHH-HHHHH
Q ss_conf 653-430002323-56778
Q gi|254780206|r 146 GLC-AGKGVVVAA-TVDEA 162 (424)
Q Consensus 146 ~~a-gGkGV~i~~-~~~e~ 162 (424)
||| +||-++++- .+++|
T Consensus 192 GLAlSSRN~YL~a~~rK~A 210 (310)
T TIGR00018 192 GLALSSRNVYLTAEERKQA 210 (310)
T ss_pred CCEECCCCCCCCHHHHHHH
T ss_conf 8412014766786678764
No 198
>PRK09275 aspartate aminotransferase; Provisional
Probab=81.23 E-value=1.9 Score=23.21 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=11.5
Q ss_pred EEECCCHHHHHHHHHHHHHCC
Q ss_conf 996289899999999998525
Q gi|254780206|r 378 TALGKTITESRELAYHMVENI 398 (424)
Q Consensus 378 v~~g~~l~eA~~~ay~~i~~I 398 (424)
+++++=-+++..++-+.+.++
T Consensus 498 VSLANL~~~dY~~IG~~i~~~ 518 (531)
T PRK09275 498 VSLANLNEEDYAKIGKSIRKL 518 (531)
T ss_pred EEECCCCHHHHHHHHHHHHHH
T ss_conf 873689988999999999999
No 199
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.21 E-value=4.4 Score=20.58 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=37.9
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEC--C--CHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEE-EC
Q ss_conf 99886588999999998589967899954--9--8357511705512878989999999871897999-97
Q gi|254780206|r 4 LLIGSGGREHALAWKIAQSPLLSELWSIP--G--NPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVV-VG 69 (424)
Q Consensus 4 LviGsGgrEhAl~~~l~~s~~~~~v~~~p--g--N~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvi-vg 69 (424)
||-|+|.--|-++....+... .+|.++ + ++- -...++..+++-++-++.++-+.+++|-+| .|
T Consensus 9 lIaG~G~LP~~va~~a~~~G~--~~~ii~l~~eaD~~-~~~~e~~~~~iG~vg~lik~l~~~~v~~vVl~G 76 (279)
T COG3494 9 LIAGNGSLPLEVAENARNQGY--APFIIGLRGEADPE-LKEFEYKEVSIGEVGKLIKLLKTEGVDRVVLAG 76 (279)
T ss_pred EEECCCCCCHHHHHHHHHCCC--CCEEEEECCCCCHH-HHCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 995598675899999986799--82799835756655-525887077578799999999984886899964
No 200
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=81.03 E-value=3.4 Score=21.39 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=28.2
Q ss_pred CEEEEECCCH-HHHHHHHHHHHCCCCCEEEEECCCH
Q ss_conf 9589988658-8999999998589967899954983
Q gi|254780206|r 1 MRVLLIGSGG-REHALAWKIAQSPLLSELWSIPGNP 35 (424)
Q Consensus 1 MkILviGsGg-rEhAl~~~l~~s~~~~~v~~~pgN~ 35 (424)
|||.|||.|| --.++|+.|...+..+++.+..=|+
T Consensus 1 mKV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~ 36 (142)
T pfam00056 1 VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINK 36 (142)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 989998987789999999997479663478850577
No 201
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.87 E-value=4.5 Score=20.50 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=35.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHCCEEE-----ECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 95899886588999999998589967899954-983575117055-----12878989999999871897999
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIP-GNPGIAQHAQCV-----AIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~p-gN~g~~~~~~~~-----~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
.+|||+|-||--..++..|.++. +.++.++. +.-....+...+ .+-..-.+...+..++.+++.-|
T Consensus 22 s~VlivG~GGlGs~~~~~La~~G-vg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i 93 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEI 93 (228)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 97899887788999999999839-9758999787455676422102378668789599999999854887530
No 202
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=80.65 E-value=1.8 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=14.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 1566654201333321234444206754225
Q gi|254780206|r 300 LEILNSCVHGNLHNTHINWKAEYALTVVVAT 330 (424)
Q Consensus 300 ~~il~~~~~g~L~~~~~~~~~~~~v~Vvlas 330 (424)
++-|-..--|.|...+.-.+-+.+---|+.+
T Consensus 606 LQg~vEafGG~L~vL~~P~HGK~srirVl~p 636 (726)
T TIGR01815 606 LQGLVEAFGGELDVLAIPVHGKASRIRVLEP 636 (726)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 6899987467213578887886336888368
No 203
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=80.31 E-value=4.7 Score=20.38 Aligned_cols=83 Identities=24% Similarity=0.287 Sum_probs=40.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCH--HHHHCCEEEEC-CCCCHHHHHHHHHHHCCCEEEE--CCCHHHH
Q ss_conf 95899886588999999998589967899954983--57511705512-8789899999998718979999--7955787
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNP--GIAQHAQCVAI-DIQNHSAIIHFCQEKHIDLVVV--GPELPLV 75 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~--g~~~~~~~~~i-~~~d~~~i~~~a~~~~iDlviv--gpE~pL~ 75 (424)
|||.+||-|.--+.++.+|.+.+...-.++.-.|+ ........... -..+.+.+ + .++|+||= ++++ +
T Consensus 2 mrVgiiG~GaIG~~va~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~L---~--~~~DlVVE~A~~~a--v 74 (265)
T PRK13303 2 MKVAMIGFGAIAAAVYELLEHDPRLRVDWVIVPEHSVDAVRRALGRAVQVVSSVDAL---A--QRPDLVVECAGHAA--L 74 (265)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHH---H--HCCCEEEECCCHHH--H
T ss_conf 299998546899999999844997279999946852677875304588644798898---2--37999998988899--9
Q ss_pred HHHHHHHHHCCCCEE
Q ss_conf 489989860588067
Q gi|254780206|r 76 NGISDALNAAGFKVF 90 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~ 90 (424)
.-.+...-+.|..++
T Consensus 75 ~~~~~~~L~~g~dl~ 89 (265)
T PRK13303 75 KEHVVPILKAGIDCA 89 (265)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999997299889
No 204
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.18 E-value=3.4 Score=21.40 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=16.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 95899886588999999998589
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSP 23 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~ 23 (424)
|||||+|-|----|.+..|.+..
T Consensus 1 mKi~V~GlG~sG~s~a~~L~~~g 23 (401)
T PRK03815 1 MKISLFGYGKTTKALARFFVKNG 23 (401)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC
T ss_conf 93999847771899999999487
No 205
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=79.83 E-value=4.8 Score=20.34 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=9.8
Q ss_pred ECCCCCHHHHHHHHHHHCCC
Q ss_conf 12878989999999871897
Q gi|254780206|r 45 AIDIQNHSAIIHFCQEKHID 64 (424)
Q Consensus 45 ~i~~~d~~~i~~~a~~~~iD 64 (424)
.++..|.+..++..+..++.
T Consensus 42 ~~~~~~l~~~i~~lr~~~~~ 61 (272)
T PRK12550 42 AFTTTDLTAAIGGVRALGIR 61 (272)
T ss_pred EECHHHHHHHHHHHHHCCCC
T ss_conf 63787799999988757998
No 206
>pfam04127 DFP DNA / pantothenate metabolism flavoprotein. The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism.
Probab=79.58 E-value=4.9 Score=20.25 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=41.0
Q ss_pred EEEEECCCHHH-----------------HHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHC--
Q ss_conf 58998865889-----------------99999998589967899954983575117055128789899999998718--
Q gi|254780206|r 2 RVLLIGSGGRE-----------------HALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKH-- 62 (424)
Q Consensus 2 kILviGsGgrE-----------------hAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~-- 62 (424)
||||-++|-|| .|||+.+.+.+.-..++..|++.-...-.....+.....+++.+.+.+.-
T Consensus 4 ~vlITaG~T~E~ID~VR~ItN~SSGkmG~alA~~~~~~Ga~V~li~g~~~~~~~~~~~~~~i~v~t~~em~~~~~~~~~~ 83 (197)
T pfam04127 4 RVLVTSGGTREPIDPVRFISNFSSGKMGAAIAEEFLKRGADVTLIAGKGSLKPEPSGNLLIIPVETAEEMLNALKEIAPD 83 (197)
T ss_pred EEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
T ss_conf 99993688644438831536269559999999999978993899723565566898881899968999999999974756
Q ss_pred -CCEEEECCCHHHHHHHHHH
Q ss_conf -9799997955787489989
Q gi|254780206|r 63 -IDLVVVGPELPLVNGISDA 81 (424)
Q Consensus 63 -iDlvivgpE~pL~~gi~d~ 81 (424)
.|++| ++|.++|+
T Consensus 84 ~~D~~I------~aAAVsDf 97 (197)
T pfam04127 84 LHDVFI------LAAAVSDF 97 (197)
T ss_pred CCCEEE------EEEECCCC
T ss_conf 577999------91000445
No 207
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=79.28 E-value=2.7 Score=22.09 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHCCCCEEEEEE
Q ss_conf 440111112101242025630
Q gi|254780206|r 124 SDPMKAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 124 ~~~~ea~~~~~~~g~PvVVKp 144 (424)
+|.|.|-..+...|+++||-+
T Consensus 59 SSREhA~~aL~~~Gi~aVIA~ 79 (129)
T cd01674 59 SSREQAATALLAKGIPLVVSG 79 (129)
T ss_pred CCHHHHHHHHHHCCCCEEEEC
T ss_conf 348899999998499799985
No 208
>pfam04694 Corona_3 Coronavirus ORF3 protein.
Probab=78.66 E-value=3.6 Score=21.24 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=24.4
Q ss_pred ECCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 8188079999962898999999999985
Q gi|254780206|r 369 ANGGRVLSATALGKTITESRELAYHMVE 396 (424)
Q Consensus 369 t~GGRVL~vv~~g~~l~eA~~~ay~~i~ 396 (424)
-+.|+.|.+++.|+++++|.+++|..+.
T Consensus 31 F~tgkllvCIgfgdt~~ea~~kayakL~ 58 (60)
T pfam04694 31 FKTGKLLVCIGFGDTLEEAEQKAYAKLQ 58 (60)
T ss_pred EECCCEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 8048699999427168998987887644
No 209
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=78.56 E-value=3.7 Score=21.13 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 35677888788751
Q gi|254780206|r 157 ATVDEATSAIDRCF 170 (424)
Q Consensus 157 ~~~~e~~~~~~~~~ 170 (424)
.|++-...++-+.|
T Consensus 178 enR~~~~r~~Pely 191 (488)
T COG2308 178 ENRRAMARAFPELY 191 (488)
T ss_pred HHHHHHHHHCHHHH
T ss_conf 74899998776778
No 210
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=78.55 E-value=5.3 Score=20.00 Aligned_cols=149 Identities=21% Similarity=0.360 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCC----CCEEECCHHHHHHHHCC--H----HHHHHHHHHHHH
Q ss_conf 8789899999998718979999795578748998986058----80670106665552010--2----357888765310
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAG----FKVFGPSQRAAKLESSK--S----FAKKFCTKYGIP 116 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~g----i~v~Gp~~~aa~le~sK--~----~~K~~l~~~gIP 116 (424)
-+.+++.=++++.+.++|+++. |+. +.+--.| ..+..|..-+..||+-. . .+.-+.+=.+|-
T Consensus 69 YPr~~~~D~~ll~~~gvd~vf~-P~~-------~emYp~~~~~~~~~~~~~~l~~~l~G~~RpghF~GV~Tvv~kLf~iv 140 (512)
T PRK13477 69 YPRTLEADRELCESAGVDAIFA-PSP-------EELYPGGAKSITQVQPPAELTSHLCGASRPGHFDGVATVVTRLLNLV 140 (512)
T ss_pred CCCCHHHHHHHHHHCCCCEEEC-CCH-------HHCCCCCCCCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 7999899999999689999988-988-------98089999871798166311234417768506778999999999636
Q ss_pred CCCCCCC--CCCHHH---HHHHHCCCCEEEEE-------ECCCC-CCCCCCCHHHHHHHHHH-------HHHHHCC--CC
Q ss_conf 1111223--440111---11210124202563-------04653-43000232356778887-------8875144--53
Q gi|254780206|r 117 TATYQHF--SDPMKA---KQYVQNKSMPIVVK-------ADGLC-AGKGVVVAATVDEATSA-------IDRCFQQ--IN 174 (424)
Q Consensus 117 t~~~~~~--~~~~ea---~~~~~~~g~PvVVK-------p~~~a-gGkGV~i~~~~~e~~~~-------~~~~~~~--~~ 174 (424)
.|.+..| .|++++ +..++.+.+|+-|. +|||| ++|-.++..+..+.-.. ....+.. ..
T Consensus 141 ~P~~a~fGeKD~QQl~vIk~mv~dl~~~v~i~~~ptvRe~dGLA~SSRN~~Ls~~er~~A~~l~~~L~~a~~~~~~g~~~ 220 (512)
T PRK13477 141 QPKRAYFGEKDWQQLAIIRRLVADLNLPVTIVGCPTVREADGLALSSRNQYLSAEERQQAAALPRALQAAKKAFQAGKRI 220 (512)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99989982322879999999999719993899708637899964313440159999999999999999999999758976
Q ss_pred HHHHH----HHHHH--CCCCCEEEECCCCCCCCCC
Q ss_conf 17778----87752--0575234421577631035
Q gi|254780206|r 175 STVII----EEYLE--GFEVSFFALCDGKTAIPFT 203 (424)
Q Consensus 175 ~~Vli----Eefl~--G~E~Sv~~i~dG~~~~~l~ 203 (424)
...++ ++.+. |.++-...++|..+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~idY~~i~d~~tL~~~~ 255 (512)
T PRK13477 221 NLSLLAAVQQELLSEPGLEVEYLELVDPQTLQPLE 255 (512)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCC
T ss_conf 49999999999951889873289964641285362
No 211
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115 This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=78.50 E-value=3.6 Score=21.23 Aligned_cols=240 Identities=17% Similarity=0.149 Sum_probs=106.4
Q ss_pred HCCHHHHHHHHHHHH-----H-CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 010235788876531-----0-1111223440111112101242025630465343000232356778887887514453
Q gi|254780206|r 101 SSKSFAKKFCTKYGI-----P-TATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQIN 174 (424)
Q Consensus 101 ~sK~~~K~~l~~~gI-----P-t~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~ 174 (424)
.+=..+++-|+++|+ | ||+|-. .+.+.|-.-+.+.. .-.++.-++.+ .+++-|...+..-+=..+
T Consensus 81 ddTf~t~e~L~~lG~aadidPdtPrylP-ddaqtaGrdiarWr-------rfsa~~E~~~l-GDrDrAtH~~Rt~~l~~G 151 (359)
T TIGR01819 81 DDTFHTHEELKELGVAADIDPDTPRYLP-DDAQTAGRDIARWR-------RFSAADEWLRL-GDRDRATHILRTQMLRAG 151 (359)
T ss_pred CCCHHHHHHHHHCCCEECCCCCCCCCCC-CHHHHHHHHHHHHH-------HCCCCCCCCCC-CCHHHHHHHHHHHHHHCC
T ss_conf 8612389999860212027888886576-41223222446652-------01477643213-627888999999998668
Q ss_pred H------HHHHHHHHH--------CC--CCCEEEECC--CCC-CCCCCCCCCC--CCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 1------777887752--------05--752344215--776-3103520001--1135665444443443000012344
Q gi|254780206|r 175 S------TVIIEEYLE--------GF--EVSFFALCD--GKT-AIPFTTARDH--KRIHDGDIGPNTGGMGACSPALGMS 233 (424)
Q Consensus 175 ~------~VliEefl~--------G~--E~Sv~~i~d--G~~-~~~l~~~~dy--Kr~~~~d~GpnTGGMGa~~p~~~~~ 233 (424)
. .-|-+.|=. =. |+++.+-+| |+. ...| ||| ++..+- |+.-+.
T Consensus 152 ~~Ls~vT~~l~~~~~~~~~l~PMtdDRvev~~~v~~dvdg~~~~~HF---QefWV~~rg~v-------------~v~dV~ 215 (359)
T TIGR01819 152 HSLSEVTEALADAFGIKARLLPMTDDRVEVSTLVETDVDGKEGAMHF---QEFWVRRRGDV-------------EVEDVE 215 (359)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCEEC---CHHHHHCCCCC-------------CCEEEE
T ss_conf 87779999999872897178606789733289997478787475300---12532037996-------------401366
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCC-CCHHHHHHHHHCCCC
Q ss_conf 3222010000089999986204623566445448985570489998865147751044332654-411566654201333
Q gi|254780206|r 234 QELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLES-DILEILNSCVHGNLH 312 (424)
Q Consensus 234 ~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~-dl~~il~~~~~g~L~ 312 (424)
..-.++ .++-++.++||+++.. +|+-...| = -.|.|.|.= ++-+.|...-- +
T Consensus 216 f~G~e~--A~~a~~a~EAi~~~~~---------vligPSNP------------v-tSIGpILal~Gire~Lrda~~-k-- 268 (359)
T TIGR01819 216 FRGAEK--AKAAPEAIEAIRDADV---------VLIGPSNP------------V-TSIGPILALPGIREALRDATV-K-- 268 (359)
T ss_pred ECCCCC--CCCCHHHHHHHHCCCE---------EEECCCCC------------C-CCCHHHCCHHHHHHHHHHCCC-C--
T ss_conf 406533--6688789998605998---------99778668------------1-113223272568999983697-3--
Q ss_pred CCCCCCCC---CC----EEEEEECCCCCCCCCCCCCC-CCCCC--CCCCCCEEEEEEEEEECCEEEECCCCEEEEEEECC
Q ss_conf 32123444---42----06754225446687757976-24876--66898689983358778879981880799999628
Q gi|254780206|r 313 NTHINWKA---EY----ALTVVVATKGYPEEYPHGTI-ISKIP--QNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGK 382 (424)
Q Consensus 313 ~~~~~~~~---~~----~v~Vvlas~GYP~~~~kg~~-I~~l~--~~~~~~~ifhagt~~~~g~l~t~GGRVL~vv~~g~ 382 (424)
-+-.++ +. -...+|++.|| ++..+|.. .++-- .-.-|.+++|-.=+..-..+-..|=.|..+...=+
T Consensus 269 --VVavSPIvG~~~vsGpA~Klm~A~G~-dvsa~gVae~Y~dfCatG~lD~~vvD~~D~~~~~r~~~~Gv~v~~t~t~M~ 345 (359)
T TIGR01819 269 --VVAVSPIVGDKPVSGPAGKLMAAVGV-DVSAAGVAEHYGDFCATGLLDVLVVDEADKADLDRVEALGVEVVATDTLMT 345 (359)
T ss_pred --EEEECCCCCCCCCCCCHHHCCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCC
T ss_conf --89971640688875843420422343-634489999888652003034678601255899999847963888166438
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9899999999998
Q gi|254780206|r 383 TITESRELAYHMV 395 (424)
Q Consensus 383 ~l~eA~~~ay~~i 395 (424)
|.+++.+.|-..+
T Consensus 346 ~~~~~~~lAr~~~ 358 (359)
T TIGR01819 346 TLDDAARLARAVV 358 (359)
T ss_pred CHHHHHHHHHHHC
T ss_conf 9889999999853
No 212
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=78.37 E-value=5.4 Score=19.96 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=12.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 79999962898999999999985
Q gi|254780206|r 374 VLSATALGKTITESRELAYHMVE 396 (424)
Q Consensus 374 VL~vv~~g~~l~eA~~~ay~~i~ 396 (424)
-+.++++|+-++=|.+.+....+
T Consensus 560 d~iliAtGSEV~La~~a~~~L~~ 582 (675)
T TIGR00232 560 DIILIATGSEVQLAVEAAKKLAA 582 (675)
T ss_pred EEEEEECCCHHHHHHHHHHHHHH
T ss_conf 08998527368999999999985
No 213
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=78.29 E-value=3.3 Score=21.50 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=18.0
Q ss_pred EEEEECCC-----HHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 58998865-----88999999998589967899954
Q gi|254780206|r 2 RVLLIGSG-----GREHALAWKIAQSPLLSELWSIP 32 (424)
Q Consensus 2 kILviGsG-----grEhAl~~~l~~s~~~~~v~~~p 32 (424)
.|||-|.. .|||| +|+|+.... +..+++
T Consensus 19 ~Ilvag~NFG~GSSREhA-~~al~~~Gi--~~VIa~ 51 (91)
T cd01577 19 DIIVAGKNFGCGSSREHA-PWALKDAGI--RAVIAE 51 (91)
T ss_pred CEEEECCCCCCCCCHHHH-HHHHHHCCC--EEEEEH
T ss_conf 689956865778528999-999998495--499972
No 214
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.28 E-value=5.4 Score=19.95 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=40.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHH-----C-CEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 958998865889999999985899678999549835751-----1-7055128789899999998718979999
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQ-----H-AQCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~-----~-~~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
|||+|+|.|---+.||+.|++..+ .|.+...|+-... + ...+.-|..+.+.+. -|.-.+.|++|.
T Consensus 1 M~IiI~GaG~vG~~La~~Ls~e~~--dV~vID~d~~~~~~~~~~lDv~~i~Gd~~~~~~L~-~Agi~~ad~~IA 71 (455)
T PRK09496 1 MKIIILGAGQVGGTLAERLVGENN--DVTVIDTDEERLRRLQDRLDVRTVVGNGSHPDVLR-EAGAEDADMLIA 71 (455)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHCCEEEEEECCCCHHHHH-HCCCCCCCEEEE
T ss_conf 979999988899999999986899--79999899999999886258689996689999999-659986999999
No 215
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=78.08 E-value=5.5 Score=19.91 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCEEEECCCH
Q ss_conf 999999987189799997955
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPEL 72 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE~ 72 (424)
+.+-.+-.+.++|+||+.-|.
T Consensus 20 ~~Lp~lk~kyk~dfvI~N~EN 40 (266)
T COG1692 20 EHLPQLKSKYKIDFVIVNGEN 40 (266)
T ss_pred HHHHHHHHHHCCCEEEECCCC
T ss_conf 870777875067389985730
No 216
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=78.06 E-value=5.5 Score=19.90 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=39.4
Q ss_pred CEEEE-------ECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHH--HHC----CEEEEC-----CCCCHHHHHHHHHH
Q ss_conf 95899-------8865--8899999999858996789995498357--511----705512-----87898999999987
Q gi|254780206|r 1 MRVLL-------IGSG--GREHALAWKIAQSPLLSELWSIPGNPGI--AQH----AQCVAI-----DIQNHSAIIHFCQE 60 (424)
Q Consensus 1 MkILv-------iGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~--~~~----~~~~~i-----~~~d~~~i~~~a~~ 60 (424)
|||++ ||.| -|--|||.+|.+... +-.|+...+++. ..+ .....+ ...+...+.++.++
T Consensus 1 mkI~fr~d~~~~iG~GH~~RclaLA~~l~~~g~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (280)
T TIGR03590 1 MRILFRADASSEIGLGHVMRCLTLARELRKRGA-EVAFACKTLPGDLIDLILSAGFPVYVLPDTSSWQDDALELINLLEK 79 (280)
T ss_pred CEEEEEEECCCCEEHHHHHHHHHHHHHHHHCCC-EEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 979999967899132089999999999998899-4999992795889999997598179816756520129999999973
Q ss_pred HCCCEEEEC
Q ss_conf 189799997
Q gi|254780206|r 61 KHIDLVVVG 69 (424)
Q Consensus 61 ~~iDlvivg 69 (424)
.++|++|+.
T Consensus 80 ~~~d~vIiD 88 (280)
T TIGR03590 80 EKFDILIVD 88 (280)
T ss_pred CCCCEEEEE
T ss_conf 797999992
No 217
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=77.98 E-value=5 Score=20.19 Aligned_cols=169 Identities=23% Similarity=0.307 Sum_probs=75.2
Q ss_pred EEEEECCCHHH----HHHHHHHHHCCCCCEEEEECC-----CHHHHH-CC-EEEECCCCCH-----HHHHHHHHHHCCCE
Q ss_conf 58998865889----999999985899678999549-----835751-17-0551287898-----99999998718979
Q gi|254780206|r 2 RVLLIGSGGRE----HALAWKIAQSPLLSELWSIPG-----NPGIAQ-HA-QCVAIDIQNH-----SAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsGgrE----hAl~~~l~~s~~~~~v~~~pg-----N~g~~~-~~-~~~~i~~~d~-----~~i~~~a~~~~iDl 65 (424)
|||+.=+||-. --|+..|++.....+|...+. .|-+.. +. ..+..+..+. -.-+++++ ..|+
T Consensus 6 ~IllgVtGsIAayK~~~L~r~L~k~G~~V~vvmT~~A~~fi~plt~~~ls~~~V~td~~~~~~~~~~~HI~la~--~aD~ 83 (392)
T PRK05579 6 RIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAALKFVTPLTFQALSGNPVYTDLWDPAAEAAMGHIELAK--WADL 83 (392)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHH--HCCE
T ss_conf 89999833799999999999998789989999885375427998999980998862777876667754634413--1576
Q ss_pred EEECCCHH-----HHHHHHHHHH-----HCCCCEE-ECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99979557-----8748998986-----0588067-01066655520102357888765310111122344011111210
Q gi|254780206|r 66 VVVGPELP-----LVNGISDALN-----AAGFKVF-GPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQ 134 (424)
Q Consensus 66 vivgpE~p-----L~~gi~d~l~-----~~gi~v~-Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~ 134 (424)
++|.|-.. ++.|++|-|- ..+-|++ .|..... |.++ -. ..+-.+.++
T Consensus 84 ~liAPATAN~iaK~A~GiaDdllt~~~la~~~pv~iaPAMn~~------------M~~n---------p~-tq~Ni~~L~ 141 (392)
T PRK05579 84 VLIAPATADLIAKLAHGIADDLLTTTLLATDAPVLVAPAMNTQ------------MWEN---------PA-TQRNLATLR 141 (392)
T ss_pred EEECCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCHH------------HHHC---------HH-HHHHHHHHH
T ss_conf 8983233789999875774378888888539957998376988------------8869---------79-999999997
Q ss_pred CCCCEEEEEEC-C-CCCC-CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 12420256304-6-5343-00023235677888788751445317778877520575234421577631035200
Q gi|254780206|r 135 NKSMPIVVKAD-G-LCAG-KGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTAR 206 (424)
Q Consensus 135 ~~g~PvVVKp~-~-~agG-kGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~ 206 (424)
+.|+ .||-|. | ||.| .|....-+.++...++.+.+. ++.+.|.-+ .++-|-+.-++-++|
T Consensus 142 ~~G~-~vi~P~~G~LAcgd~G~Grl~ep~~I~~~i~~~l~--------~~~l~gkkv---LITaG~T~E~IDpVR 204 (392)
T PRK05579 142 SRGV-LVIGPASGRLACGDVGKGRMAEPEEIVAAAERLLG--------PKDLAGKRV---LITAGPTREPIDPVR 204 (392)
T ss_pred HCCC-EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--------CCCCCCCEE---EEECCCCEEEECCEE
T ss_conf 3698-88189667524633235689999999999998506--------777678879---997477247767624
No 218
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=77.94 E-value=5.5 Score=19.88 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=37.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH-HCCEEE---ECCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 95899886588999999998589967899954983575-117055---1287898999999987189799997
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIA-QHAQCV---AIDIQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~-~~~~~~---~i~~~d~~~i~~~a~~~~iDlvivg 69 (424)
.||||||.|+--..++..|.+. ...+++++.-+..-+ .+++.. .+...+++.+.+... +.|++|.+
T Consensus 13 ~~vlVIGaG~~~~~~~~~L~~~-g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~~~l~--~~DivI~a 82 (134)
T pfam01488 13 KKVLLIGAGEMARLAAKHLLSK-GAKKITIANRTLEKAKELAEEFGGEEVEALPLDELEELLA--EADIVISA 82 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHH--HCCEEEEE
T ss_conf 9899999609999999999975-9988999547578999999984997258985135441363--19999992
No 219
>PRK08655 prephenate dehydrogenase; Provisional
Probab=77.56 E-value=5.6 Score=19.80 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=19.6
Q ss_pred CEEEEECCCH-HHHHHHHHHHHCCCCCEEEEECCCH
Q ss_conf 9589988658-8999999998589967899954983
Q gi|254780206|r 1 MRVLLIGSGG-REHALAWKIAQSPLLSELWSIPGNP 35 (424)
Q Consensus 1 MkILviGsGg-rEhAl~~~l~~s~~~~~v~~~pgN~ 35 (424)
|||.|||+.| =-.-+++-|..+.. +|.+.-.|+
T Consensus 1 mkI~IIGG~G~MG~~Fa~~f~~sGy--eV~I~gRd~ 34 (441)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKDKGY--EVIVWGRDP 34 (441)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC
T ss_conf 9799994798177999999986798--899981573
No 220
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.34 E-value=5.7 Score=19.76 Aligned_cols=90 Identities=26% Similarity=0.273 Sum_probs=46.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEE-EE---ECCCHHHHHCCEE-EECCCCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 9589988658899999999858996789-99---5498357511705-51287898999999987189799997955787
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSEL-WS---IPGNPGIAQHAQC-VAIDIQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v-~~---~pgN~g~~~~~~~-~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
.||.+||||-.-.-|-.|+.++...-+. |. -|+..|.+..++. +.-.-.-.+.+++.-....|||||-...+..-
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa~~h 84 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSAGAH 84 (310)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCHH
T ss_conf 25999736862088999998547865630487348885077888861985224478999839998776558852432034
Q ss_pred HHHHHHHHHCCCCEE
Q ss_conf 489989860588067
Q gi|254780206|r 76 NGISDALNAAGFKVF 90 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~ 90 (424)
..-+-.|.+.|++.+
T Consensus 85 ~~~a~~~ae~gi~~i 99 (310)
T COG4569 85 VKNAAALAEAGIRLI 99 (310)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 440577886498423
No 221
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.17 E-value=5.8 Score=19.73 Aligned_cols=66 Identities=20% Similarity=0.146 Sum_probs=43.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC-C-----CHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 5899886588999999998589967899954-9-----83575117055128789899999998718979999
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP-G-----NPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p-g-----N~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
+|||+|-||--.-.+..|.++. +.++.++. + |-.-+.++....+-..-.+...+..++.+++.-|.
T Consensus 13 ~V~v~G~GGvGs~~a~~LarsG-VG~l~lvD~D~v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~ 84 (231)
T cd00755 13 HVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVD 84 (231)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCEECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 7899888636899999999809-97599971999045444433016563369972899999999879998899
No 222
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=77.15 E-value=5.8 Score=19.73 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=36.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHCCEEEECCCCCH-------HHHHHHHHHHCCCEEE
Q ss_conf 95899886588999999998589967899954-9835751170551287898-------9999999871897999
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIP-GNPGIAQHAQCVAIDIQNH-------SAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~p-gN~g~~~~~~~~~i~~~d~-------~~i~~~a~~~~iDlvi 67 (424)
.+|||+|-||=-..++.-|..+. +-++.++. +.-..+.+...+-.+..|. +...+..++.+++.-|
T Consensus 25 a~VlVvGaGGLGs~~a~~La~aG-VG~i~ivD~D~Ve~SNL~RQ~L~~e~Dig~~~pKa~aA~~~L~~iNp~v~I 98 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSEVRV 98 (339)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 97899877777799999999848-982999809992466788650656213322637799999999834998605
No 223
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.12 E-value=5.8 Score=19.72 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=29.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCH
Q ss_conf 95899886588999999998589967899954983
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNP 35 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~ 35 (424)
|||-|||.|.--.++|..|...+.++++.+..=|.
T Consensus 1 mKI~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 97999994888999999998679988799991889
No 224
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=76.85 E-value=5.9 Score=19.67 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=65.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEE-CCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEE--------EECCCH
Q ss_conf 589988658899999999858996789995-49835751170551287898999999987189799--------997955
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSI-PGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLV--------VVGPEL 72 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~-pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlv--------ivgpE~ 72 (424)
+|.|-|.|---...++.|.+... +|..+ ..++++ ++-+-.|++++.++..+++-.+. .+.+++
T Consensus 34 ~v~IqGfGnVG~~~a~~l~~~Ga--kvvavsD~~G~i------~~~~Gldi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 105 (237)
T pfam00208 34 TVAVQGFGNVGSYAAEKLLELGA--KVVAVSDSSGYI------YDPNGIDIEELLELKEEGGGRVVEYAGSGAEYISGEE 105 (237)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCEE------ECCCCCCHHHHHHHHHHHCCEEECCCCCCCEECCCCC
T ss_conf 99998988999999999998799--699998287679------9999999999999999719843124665753448710
Q ss_pred HHHHHHHHHHHHCCCCEEECCHHHHHHH---HCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 7874899898605880670106665552---0102357888765310111122344011111210124202563046534
Q gi|254780206|r 73 PLVNGISDALNAAGFKVFGPSQRAAKLE---SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCA 149 (424)
Q Consensus 73 pL~~gi~d~l~~~gi~v~Gp~~~aa~le---~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~ag 149 (424)
+| ....-+|-|.+..-.|. -.+.-+|-+.+-+|-|+. .+|.+.+.+-| +++=||-++-
T Consensus 106 ~~---------~~~~DIliPaA~~~~I~~~na~~i~ak~I~EgAN~p~t--------~eA~~~L~~rg--I~viPD~laN 166 (237)
T pfam00208 106 LW---------EIDCDILVPCATQNEINEENAKLIKAKAVVEGANMPTT--------PEADEILEERG--ILYAPDKAAN 166 (237)
T ss_pred CC---------CCCCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCC--------HHHHHHHHHCC--CEEECHHHHC
T ss_conf 00---------47666886445568899899986275489753789889--------78999999889--9896807752
Q ss_pred CCCCCCH
Q ss_conf 3000232
Q gi|254780206|r 150 GKGVVVA 156 (424)
Q Consensus 150 GkGV~i~ 156 (424)
.-||.+.
T Consensus 167 AGGV~vS 173 (237)
T pfam00208 167 AGGVTVS 173 (237)
T ss_pred CCCEEEE
T ss_conf 8763544
No 225
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=76.80 E-value=5.9 Score=19.66 Aligned_cols=91 Identities=12% Similarity=0.204 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEE-----ECCHH-HHHHHH-CCHHHH-----HHHHHHHHH
Q ss_conf 898999999987189799997955787489989860588067-----01066-655520-102357-----888765310
Q gi|254780206|r 49 QNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVF-----GPSQR-AAKLES-SKSFAK-----KFCTKYGIP 116 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~-----Gp~~~-aa~le~-sK~~~K-----~~l~~~gIP 116 (424)
.|+.++++.+++..+...+.-.-..|....++.|.+.|+..+ |++.+ ..++-+ .-.|.| +.++++|||
T Consensus 78 ~D~~ei~~~a~~~G~~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~ 157 (375)
T PRK05301 78 KDLEELVAHARRLGLYTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYP 157 (375)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 68999999999769758996067455799999998509988999567798778777637886299999999999974981
Q ss_pred CCCCC-----CCCCCHHHHHHHHCCCCE
Q ss_conf 11112-----234401111121012420
Q gi|254780206|r 117 TATYQ-----HFSDPMKAKQYVQNKSMP 139 (424)
Q Consensus 117 t~~~~-----~~~~~~ea~~~~~~~g~P 139 (424)
+---. .+++.++..+++.++|.+
T Consensus 158 v~i~~ti~r~N~~~l~~i~~la~~lGv~ 185 (375)
T PRK05301 158 LTLNAVIHRHNIDQIPRIIELAVELGAD 185 (375)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 6999872305688899999999972998
No 226
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=76.71 E-value=5.9 Score=19.64 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHHHHCCC-EEEECCCHHHH---------HHHHHHHHHCC------------CCEEE
Q ss_conf 999871897-99997955787---------48998986058------------80670
Q gi|254780206|r 56 HFCQEKHID-LVVVGPELPLV---------NGISDALNAAG------------FKVFG 91 (424)
Q Consensus 56 ~~a~~~~iD-lvivgpE~pL~---------~gi~d~l~~~g------------i~v~G 91 (424)
+-.++++|| ||++|-+-.|. -++.+.|.+.| ++++|
T Consensus 91 ~nL~~~gIdaLiVIGGDGSltGA~~fr~ew~~ll~eL~~~G~i~~~~~~~~~~l~ivG 148 (762)
T cd00764 91 YNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVG 148 (762)
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEE
T ss_conf 9999809988999879537877777665546789999872764234430257875788
No 227
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.16 E-value=6.1 Score=19.54 Aligned_cols=64 Identities=30% Similarity=0.426 Sum_probs=39.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-CEEEEECCCHHHHH-CCEEEE-CC-CCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 9589988658899999999858996-78999549835751-170551-28-7898999999987189799997
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLL-SELWSIPGNPGIAQ-HAQCVA-ID-IQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~-~~v~~~pgN~g~~~-~~~~~~-i~-~~d~~~i~~~a~~~~iDlvivg 69 (424)
|||.+||.|-=..||+..|.++... .++++.+-|+.... +.+... +. ..|.+++++ +-|++|.+
T Consensus 1 MkIgfIG~GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~~v~~~~~n~~~~~-----~~dvi~La 68 (255)
T PRK06476 1 MRIGFIGTGAITEAMVTGLLSSPADVSEIIVSPRNAQIAARLAARFAKVRIAKDNQAVVD-----RSDVVFLA 68 (255)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEECCHHHHHH-----HCCEEEEE
T ss_conf 989998646999999999997889925088989898999999987695598578899985-----18878886
No 228
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=75.98 E-value=5.6 Score=19.85 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=23.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 958998865889999999985899678999549
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPG 33 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pg 33 (424)
|||+|+|.|+----+++.|++...-.. +++.+
T Consensus 1 MkI~I~GaGAiG~~~a~~L~~~g~~V~-lv~r~ 32 (306)
T PRK12921 1 MKIAVVGAGAVGGTFGARLLEAGRDVT-FLGRS 32 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEE-EEEEC
T ss_conf 989999924999999999983699889-99700
No 229
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=75.62 E-value=6.3 Score=19.45 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=25.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHH-------------CCEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 58998865889999999985899678999549835751-------------17055128789899999998718979999
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQ-------------HAQCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~-------------~~~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
+|||||.|.-. .++.+.+-+.+.++.++-=||.... .+..+.+-+.|--+.++-+.+ +.|++|+
T Consensus 79 ~VLiiGgGdG~--tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~ 155 (282)
T COG0421 79 RVLIIGGGDGG--TLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIV 155 (282)
T ss_pred EEEEECCCCCH--HHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCC-CCCEEEE
T ss_conf 69998897669--99999836884337999708899999998666754335797368996107999874887-6778998
Q ss_pred C
Q ss_conf 7
Q gi|254780206|r 69 G 69 (424)
Q Consensus 69 g 69 (424)
-
T Consensus 156 D 156 (282)
T COG0421 156 D 156 (282)
T ss_pred C
T ss_conf 5
No 230
>TIGR00250 TIGR00250 conserved hypothetical protein TIGR00250; InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VIIcolicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma urealyticum (Q9PQY7 from SWISSPROT, ). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase . This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC . ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0004518 nuclease activity, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus.
Probab=75.04 E-value=3.3 Score=21.50 Aligned_cols=63 Identities=30% Similarity=0.538 Sum_probs=42.6
Q ss_pred CCCH--HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCC-CCC
Q ss_conf 7898--9999999871897999979557874899898605880670106665552010235788876531011112-234
Q gi|254780206|r 48 IQNH--SAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQ-HFS 124 (424)
Q Consensus 48 ~~d~--~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~-~~~ 124 (424)
..|. +.|.++.++.+||.+|+|- |+ +-.| .+||... .++.|+|.+-.++++|.--+. ..+
T Consensus 35 ~~d~Gl~~i~~l~ke~~~d~~vvGl--P~--------nM~G--t~g~~~~-----~~~kFA~r~~~~~~v~v~l~DERL~ 97 (133)
T TIGR00250 35 EPDWGLSRIEELLKEWKVDKIVVGL--PL--------NMDG--TVGPLTK-----RAQKFAKRLEGRFGVPVELMDERLS 97 (133)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECC--CC--------CCCC--CCCHHHH-----HHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 8862179999987315889788617--87--------8788--7250268-----8899998865540664378617613
Q ss_pred CCH
Q ss_conf 401
Q gi|254780206|r 125 DPM 127 (424)
Q Consensus 125 ~~~ 127 (424)
+.+
T Consensus 98 t~~ 100 (133)
T TIGR00250 98 TVE 100 (133)
T ss_pred HHH
T ss_conf 789
No 231
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.90 E-value=6.6 Score=19.32 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=11.0
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 111112101242025
Q gi|254780206|r 127 MKAKQYVQNKSMPIV 141 (424)
Q Consensus 127 ~ea~~~~~~~g~PvV 141 (424)
....+|++.+|.|-|
T Consensus 124 p~i~~F~e~FG~P~v 138 (224)
T COG1810 124 PHIDEFAERFGKPEV 138 (224)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 579999997199559
No 232
>PRK06545 prephenate dehydrogenase; Validated
Probab=74.77 E-value=6.6 Score=19.30 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=36.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEE-ECC--CCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 95899886588999999998589967899954983575117055-128--78989999999871897999979
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCV-AID--IQNHSAIIHFCQEKHIDLVVVGP 70 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~-~i~--~~d~~~i~~~a~~~~iDlvivgp 70 (424)
.+|+|||-|=---.|+.+|++.....+++-..-|+-....+... .+| ..+.+..+ .+.|+||++-
T Consensus 1 k~V~IiGlGLIGgSlalalk~~g~~~~i~~~d~~~~~l~~A~~~g~id~~~~~~~~~~-----~~~DlVvlat 68 (357)
T PRK06545 1 KTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSGAQLARALGFGVIDELAEDLARAA-----AEADLIVLAV 68 (357)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEECCCHHHHC-----CCCCEEEECC
T ss_conf 9799997787899999999854997699996699999999986899773048876715-----6799999949
No 233
>PRK07588 hypothetical protein; Provisional
Probab=74.69 E-value=5.8 Score=19.73 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=21.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 95899886588999999998589967899
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELW 29 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~ 29 (424)
|||+|+|.|=---++|..|++...-..||
T Consensus 1 mkVlIvGaGiaGLalA~~L~r~G~~v~V~ 29 (391)
T PRK07588 1 MKIAISGAGIAGATLAHWLQRTGHEPTLI 29 (391)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 97999993289999999998689998999
No 234
>PRK05599 hypothetical protein; Provisional
Probab=74.51 E-value=6.7 Score=19.25 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=39.0
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHH----H-H----C---CEEEECCCCCHHHHHHHHHHH-----C
Q ss_conf 958998865-8899999999858996789995498357----5-1----1---705512878989999999871-----8
Q gi|254780206|r 1 MRVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGI----A-Q----H---AQCVAIDIQNHSAIIHFCQEK-----H 62 (424)
Q Consensus 1 MkILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~----~-~----~---~~~~~i~~~d~~~i~~~a~~~-----~ 62 (424)
|.|||.|.. |--.|+|+.|.+ .. .+.++-.|+.- + . . ...+..|.+|.+.+.+++++. .
T Consensus 1 MtvlITGASsGIG~a~A~~lA~--G~-~vvl~~R~~e~l~~l~~~l~~~g~~~v~~~~~Dvtd~~~~~~~v~~~~~~~g~ 77 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLAH--GE-DVVLAARRPEAAGGLAEDLRQLGATSVHVLSFDATDLDSHRELVKQTQELAGE 77 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9899988868999999999985--99-49999999999999999998625971899728999999999999999986198
Q ss_pred CCEEEE
Q ss_conf 979999
Q gi|254780206|r 63 IDLVVV 68 (424)
Q Consensus 63 iDlviv 68 (424)
+|..+.
T Consensus 78 id~lv~ 83 (246)
T PRK05599 78 ISLAVV 83 (246)
T ss_pred CEEEEE
T ss_conf 439998
No 235
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=74.49 E-value=6.7 Score=19.25 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=57.8
Q ss_pred CEEEEECCCH--HHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 9589988658--89999999985899678999549835751170551287898999999987189799997955787489
Q gi|254780206|r 1 MRVLLIGSGG--REHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 1 MkILviGsGg--rEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi 78 (424)
|||||+-.-. |+ .|...|.+++.++-+. ...|-++.++.++++++|+++.--+-|-..|+
T Consensus 2 irVLIVDDs~~~R~-~l~~~L~~~~~~eVv~-----------------~A~~g~eAl~~~~~~~pDvVllDi~MP~mdGi 63 (340)
T PRK12555 2 MNVGIVDDSALARE-ALRRIIARRPDHRVLG-----------------VATDGLQARDLCKAQPPDVVLLDLEMPRMDGL 63 (340)
T ss_pred CEEEEEECCHHHHH-HHHHHHHHCCCCEEEE-----------------EECCHHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 88999909889999-9999996099948999-----------------98999999999886199999972788999879
Q ss_pred HHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHCCCCEEEEEECC
Q ss_conf 9898605880670106665552010235788876531011112234--4011111210124202563046
Q gi|254780206|r 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFS--DPMKAKQYVQNKSMPIVVKADG 146 (424)
Q Consensus 79 ~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~--~~~ea~~~~~~~g~PvVVKp~~ 146 (424)
.+.|++|+++.+|.--....+ +.+.+.++++.=-+-++-||..
T Consensus 64 -------------------------e~l~~I~~~~p~PVimvSs~~~~~~~~~~~AL~~GA~D~i~KP~~ 108 (340)
T PRK12555 64 -------------------------TFLRRIMRRRPCPVLIVSSLTEAGASITYEALGAGALDAVDKPKL 108 (340)
T ss_pred -------------------------HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHEEECCCC
T ss_conf -------------------------999999987899869985035657699999997797766847887
No 236
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=74.18 E-value=6.8 Score=19.20 Aligned_cols=86 Identities=15% Similarity=0.291 Sum_probs=41.3
Q ss_pred CEEEEECCCHHHHH-HHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHH-HHHHH
Q ss_conf 95899886588999-99999858996789995498357511705512878989999999871897999979557-87489
Q gi|254780206|r 1 MRVLLIGSGGREHA-LAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELP-LVNGI 78 (424)
Q Consensus 1 MkILviGsGgrEhA-l~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~p-L~~gi 78 (424)
||||++=+||---+ ++.++.+.-. ...-.+.++-....+..+.+ .+.|+++.||..- .-..+
T Consensus 1 ~kVLl~Ca~GmSSs~la~~m~k~A~--------------~~gi~~~i~A~~~~~~~d~~--~~yDvilLaPQv~~~~~~l 64 (99)
T cd05565 1 LNVLVLCAGGGTSGLLANALNKGAK--------------ERGVPLEAAAGAYGSHYDMI--PDYDLVILAPQMASYYDEL 64 (99)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH--------------HCCCCEEEEEEECHHHHHHH--HCCCEEEECHHHHHHHHHH
T ss_conf 9099990798858999999999999--------------81997699951034489887--0799999985088889999
Q ss_pred HHHHHHCCCCEEE-CCHHHHHHHHC
Q ss_conf 9898605880670-10666555201
Q gi|254780206|r 79 SDALNAAGFKVFG-PSQRAAKLESS 102 (424)
Q Consensus 79 ~d~l~~~gi~v~G-p~~~aa~le~s 102 (424)
...-.+.|+|+.- |.++...|.+|
T Consensus 65 k~~ad~~Gi~v~~i~~~~Yi~lt~d 89 (99)
T cd05565 65 KKDTDRLGIKLVTTTGKQYIELTRD 89 (99)
T ss_pred HHHHHHCCCEEEEECHHHEEEEECC
T ss_conf 9999983991887083452221159
No 237
>pfam01820 Dala_Dala_lig_N D-ala D-ala ligase N-terminus. This family represents the N-terminal region of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4 which is thought to be involved in substrate binding. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=74.00 E-value=5 Score=20.16 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=41.1
Q ss_pred CEEEEECCC-HHHHHH--------HHHHHHCCC-CCEEEEECCCHHHHH---CCEEEECCCCC---HHHHHHHHHHHCCC
Q ss_conf 958998865-889999--------999985899-678999549835751---17055128789---89999999871897
Q gi|254780206|r 1 MRVLLIGSG-GREHAL--------AWKIAQSPL-LSELWSIPGNPGIAQ---HAQCVAIDIQN---HSAIIHFCQEKHID 64 (424)
Q Consensus 1 MkILviGsG-grEhAl--------~~~l~~s~~-~~~v~~~pgN~g~~~---~~~~~~i~~~d---~~~i~~~a~~~~iD 64 (424)
|||.|+-+| ..||.+ ..+|.++.. +..+++...+--... .......+..+ .......-...++|
T Consensus 1 ~kvavl~GG~S~EheISl~Sa~~v~~~L~~~~~~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 80 (110)
T pfam01820 1 MRIAVLFGGRSSEHEVSLKSARAVLKALDKEGYEVIPIDIDKDGRWLLGDGDLGLLAPDDKLDLEDKAELLAVLLAEKVD 80 (110)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCHHHHHCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 97999955686113889988999999997649759999874898787346403332135310012222221011124889
Q ss_pred EEEE---CC--CHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 9999---79--5578748998986058806701
Q gi|254780206|r 65 LVVV---GP--ELPLVNGISDALNAAGFKVFGP 92 (424)
Q Consensus 65 lviv---gp--E~pL~~gi~d~l~~~gi~v~Gp 92 (424)
++++ |+ |+=- +...|+..++|..|.
T Consensus 81 vvF~~lHG~~GEDG~---iQglle~~~iPytGs 110 (110)
T pfam01820 81 VVFPVLHGPFGEDGT---IQGLLELLGIPYVGS 110 (110)
T ss_pred EEEEECCCCCCCCCH---HHHHHHHCCCCCCCC
T ss_conf 999988898866578---999999819998899
No 238
>PRK07680 late competence protein ComER; Validated
Probab=73.91 E-value=6.9 Score=19.15 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=39.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCC--CEEEEECCCHHHHH-CCEEE-ECC-CCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 9589988658899999999858996--78999549835751-17055-128-7898999999987189799997
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLL--SELWSIPGNPGIAQ-HAQCV-AID-IQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~--~~v~~~pgN~g~~~-~~~~~-~i~-~~d~~~i~~~a~~~~iDlvivg 69 (424)
|||.+||.|-=-.||+..|.++..+ ..+++...|+.-.. +.+.. .+. ..|.+++ ++ +.|++|.+
T Consensus 1 MkI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~~l~~~~~~i~~~~~~~~~---~~--~~dvIiLa 69 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESRAVKPSCLTITNRTPAKAYHIKEKYPSIHVAKTIEEV---IE--QSELIFIC 69 (273)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEECCHHHH---HH--CCCEEEEE
T ss_conf 98999876999999999999779989456999889989999999876990886888999---84--09989996
No 239
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=73.83 E-value=7 Score=19.14 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=42.7
Q ss_pred CEEEEECCCHHH--HHHHHHHHHCCCCCEEEEEC-----CCHHHHH-CC-----EEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 958998865889--99999998589967899954-----9835751-17-----05512878989999999871897999
Q gi|254780206|r 1 MRVLLIGSGGRE--HALAWKIAQSPLLSELWSIP-----GNPGIAQ-HA-----QCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgrE--hAl~~~l~~s~~~~~v~~~p-----gN~g~~~-~~-----~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
|++||-|+-|.= +-+-..+.+-+. .+|.+.. ||..... +. ..+..|+.|.+.+.++.+++++|.|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vv 79 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVV 79 (340)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 93799657515778999999960997-52899752331577878886406997158854554799999999744887599
No 240
>TIGR02049 gshA_ferroox glutamate--cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria . It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase..
Probab=73.76 E-value=1.7 Score=23.60 Aligned_cols=181 Identities=24% Similarity=0.235 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHCC-CCEEECCHHHHHHHHCCH--------HHHHHHHHHHHH----CCCCCC-----C----------CC
Q ss_conf 8748998986058-806701066655520102--------357888765310----111122-----3----------44
Q gi|254780206|r 74 LVNGISDALNAAG-FKVFGPSQRAAKLESSKS--------FAKKFCTKYGIP----TATYQH-----F----------SD 125 (424)
Q Consensus 74 L~~gi~d~l~~~g-i~v~Gp~~~aa~le~sK~--------~~K~~l~~~gIP----t~~~~~-----~----------~~ 125 (424)
|++||=|.|+... -+++ |+-.+-+-.+.|. .+++|++..+|= .|-|.. | +.
T Consensus 165 Ls~giPdiL~~~~eQ~il-Ppl~~GW~~RrK~~hF~~Y~~vA~efa~~i~IDPWli~p~f~~c~G~DF~~~~g~~~la~~ 243 (436)
T TIGR02049 165 LSAGIPDILKGIKEQDIL-PPLHAGWRSRRKSNHFEAYQEVASEFAKLIGIDPWLINPYFEKCDGIDFDDREGEDALATA 243 (436)
T ss_pred CCCCCCHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 447876677577526215-8753565444112678999999999864417784421200001066335610353689999
Q ss_pred CHHHHHHHH----CC---CCE-EEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HCC-----CCHHHHHHHHHHCCCCC
Q ss_conf 011111210----12---420-256304653430002323567788878875---144-----53177788775205752
Q gi|254780206|r 126 PMKAKQYVQ----NK---SMP-IVVKADGLCAGKGVVVAATVDEATSAIDRC---FQQ-----INSTVIIEEYLEGFEVS 189 (424)
Q Consensus 126 ~~ea~~~~~----~~---g~P-vVVKp~~~agGkGV~i~~~~~e~~~~~~~~---~~~-----~~~~VliEefl~G~E~S 189 (424)
.|.+++.++ +. .-| +|||+|-..=|.||.-++|-+|.+.-=.+- +.. .-+.|+|+|=+.-.|-.
T Consensus 244 Vd~vL~~~~~kY~eYgI~~~Pyv~vKAdaGTYGMGimTa~sgeE~l~LNrK~R~kM~k~KEGl~vs~ViiQEGV~T~e~~ 323 (436)
T TIGR02049 244 VDQVLSKVQKKYEEYGIHEKPYVIVKADAGTYGMGIMTAKSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEKL 323 (436)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCCHHHHC
T ss_conf 99999999998875587568758997078874550588426378542530001344311257010556784784406530
Q ss_pred E-EEEC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC----CCCCCEEEECCHHHHHHHHHHHCCCE
Q ss_conf 3-4421------57763103520001113566544444344300001234----43222010000089999986204623
Q gi|254780206|r 190 F-FALC------DGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGM----SQELYSTVIQKIILPTIEGMQKEQNP 258 (424)
Q Consensus 190 v-~~i~------dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~----~~~~~~~i~~~i~~~~~~~l~~~~~~ 258 (424)
- .+.+ =|..++ ...=|=|.+. +-|...|++|| .+-|.++- +.+..++. -+.++.+.+..+..++|
T Consensus 324 ~q~avAEPvvYmig~~v~-GgfYRvh~~r-g~denLNA~g~-~F~pls~~iPtGnGdnsqea-Peackrvfeq~~s~~lP 399 (436)
T TIGR02049 324 NQEAVAEPVVYMIGRTVV-GGFYRVHTGR-GVDENLNAPGM-HFVPLSFSIPTGNGDNSQEA-PEACKRVFEQFDSLSLP 399 (436)
T ss_pred CCCCCCCCEEEECCCEEE-EEEEEECCCC-CCCCCCCCCCC-EEECCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCC
T ss_conf 454655640233177677-5578752778-87536789886-55037766667887542001-58899998877532787
Q ss_pred E
Q ss_conf 5
Q gi|254780206|r 259 F 259 (424)
Q Consensus 259 y 259 (424)
-
T Consensus 400 ~ 400 (436)
T TIGR02049 400 R 400 (436)
T ss_pred C
T ss_conf 5
No 241
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=73.68 E-value=7 Score=19.11 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.8
Q ss_pred CCCCCCCCHH
Q ss_conf 3430002323
Q gi|254780206|r 148 CAGKGVVVAA 157 (424)
Q Consensus 148 agGkGV~i~~ 157 (424)
+||-|+.-..
T Consensus 105 aGG~GiaPl~ 114 (246)
T cd06218 105 GGGIGIAPLL 114 (246)
T ss_pred ECCCCHHHHH
T ss_conf 6573154399
No 242
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=73.50 E-value=7.1 Score=19.08 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=52.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHH---HHHHHHC-CCC-CCCCCCHHHHHHHHCC
Q ss_conf 8979999795578748998986058806701066655520102357888---7653101-111-2234401111121012
Q gi|254780206|r 62 HIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC---TKYGIPT-ATY-QHFSDPMKAKQYVQNK 136 (424)
Q Consensus 62 ~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l---~~~gIPt-~~~-~~~~~~~ea~~~~~~~ 136 (424)
.+-.|+.+--+|..+|+++.+..-|=.+.|-+-.. ..+....+.|+++ ++.|+.- |.. ......+++++++++.
T Consensus 81 ~iPIVF~~V~dPv~aglv~s~~~pg~NvTGvs~~~-~~~~~l~l~~~l~P~~k~igvlyn~~e~ns~~~~~~~~~~a~~~ 159 (281)
T cd06325 81 DIPIVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLV-PVETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKELKKAAAKL 159 (281)
T ss_pred CCCEEEEECCCHHHCCCCCCCCCCCCCEEEEECCC-CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99989995168666275435678999579987874-78999999998588985899995799865699999999999976
Q ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 420256304653430002323567788878875
Q gi|254780206|r 137 SMPIVVKADGLCAGKGVVVAATVDEATSAIDRC 169 (424)
Q Consensus 137 g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~ 169 (424)
|+.++..+. .+..|...+++..
T Consensus 160 Gi~v~~~~v-----------~~~~ei~~a~~~l 181 (281)
T cd06325 160 GIEVVEATV-----------SSSNDVQQAAQSL 181 (281)
T ss_pred CCEEEEEEC-----------CCHHHHHHHHHHH
T ss_conf 988999945-----------9888999999975
No 243
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=73.07 E-value=6.9 Score=19.16 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=21.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9589988658899999999858996789995
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSI 31 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~ 31 (424)
|||+|||.|+----++..|.+... +|.+.
T Consensus 3 mkI~IiGaGAvG~~~a~~L~~aG~--~V~lv 31 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA--DVTLI 31 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CEEEE
T ss_conf 779998967999999999985899--87999
No 244
>PRK06223 malate dehydrogenase; Reviewed
Probab=72.68 E-value=7.4 Score=18.95 Aligned_cols=111 Identities=26% Similarity=0.362 Sum_probs=58.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHH----H-HCCEEEE-------CC-CCCHHHHHHHHHHHCCCEEE
Q ss_conf 9589988658899999999858996789995498357----5-1170551-------28-78989999999871897999
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGI----A-QHAQCVA-------ID-IQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~----~-~~~~~~~-------i~-~~d~~~i~~~a~~~~iDlvi 67 (424)
|||-|||.|.--.+++..|...+..+++.+..-|+.. + .+..... +. ..|.++ -.+-|+||
T Consensus 1 mKI~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~------~~daDiVV 74 (312)
T PRK06223 1 MKISIIGAGNVGATLAHLLALKELGKDVVLFDIPEGIPQGKALDIAESSAVDGFDAKITGTNDYAD------IAGSDVVI 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHH------HCCCCEEE
T ss_conf 979999969899999999985799874899769997336798887651433688847983788899------57999999
Q ss_pred ECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHH---HHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9795578748998986058806701066655520102357888---76531011112234401111121
Q gi|254780206|r 68 VGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC---TKYGIPTATYQHFSDPMKAKQYV 133 (424)
Q Consensus 68 vgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l---~~~gIPt~~~~~~~~~~ea~~~~ 133 (424)
+-.-.|.-.|. .+...+..+-...|+++ .+++ |.+.+-.++|.-+...++
T Consensus 75 itag~~rk~g~---------------tR~dll~~N~~I~k~i~~~i~~~~-p~~iilvvsNPvDv~t~~ 127 (312)
T PRK06223 75 ITAGVPRKPGM---------------SRDDLLGINAKIMKDVGEGIKKYA-PDAIVIVITNPVDAMTYV 127 (312)
T ss_pred EECCCCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHH
T ss_conf 90677899998---------------868999987899999999998409-981899936936899999
No 245
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=72.67 E-value=6.4 Score=19.39 Aligned_cols=70 Identities=26% Similarity=0.542 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 89899999998718979999795578748998986058806701066655520102357888765310111122344011
Q gi|254780206|r 49 QNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMK 128 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~e 128 (424)
.|++.+.+++++++++.+|+|-. + ...|-. || +-+..+.|++.+.++.++|.--+..=-+-.+
T Consensus 40 ~~~~~l~~li~~~~~~~vVVGlP--~--------~m~g~~--~~-----~~~~~~~f~~~L~~r~~lpv~l~DERltTv~ 102 (141)
T COG0816 40 QDFNALLKLVKEYQVDTVVVGLP--L--------NMDGTE--GP-----RAELARKFAERLKKRFNLPVVLWDERLSTVE 102 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEECC--C--------CCCCCC--CH-----HHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf 56999999999838887999667--6--------888871--34-----6999999999998764987899818657999
Q ss_pred HHHHHHC
Q ss_conf 1112101
Q gi|254780206|r 129 AKQYVQN 135 (424)
Q Consensus 129 a~~~~~~ 135 (424)
|...+.+
T Consensus 103 A~~~L~~ 109 (141)
T COG0816 103 AERMLIE 109 (141)
T ss_pred HHHHHHH
T ss_conf 9999997
No 246
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=72.62 E-value=4.1 Score=20.82 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=53.1
Q ss_pred HHHHHHHHHHH-----CCCEEEECCCH-HHHHHHHHHHHHCCC------CEEECCHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 89999999871-----89799997955-787489989860588------0670106665552010235788876531011
Q gi|254780206|r 51 HSAIIHFCQEK-----HIDLVVVGPEL-PLVNGISDALNAAGF------KVFGPSQRAAKLESSKSFAKKFCTKYGIPTA 118 (424)
Q Consensus 51 ~~~i~~~a~~~-----~iDlvivgpE~-pL~~gi~d~l~~~gi------~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~ 118 (424)
.+++.+|+++. +.+.++..|.. |-..-....|.+.|= |++.|=..+...-+.|...-.+..+.
T Consensus 66 ~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~----- 140 (388)
T COG1168 66 YAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDD----- 140 (388)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCC-----
T ss_conf 999999999713777885528983751276999999837699826964888618999875169679746643469-----
Q ss_pred CCCCCCCCHHHHHHHHCC--CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 112234401111121012--4202563046534300023235677888788751
Q gi|254780206|r 119 TYQHFSDPMKAKQYVQNK--SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCF 170 (424)
Q Consensus 119 ~~~~~~~~~ea~~~~~~~--g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~ 170 (424)
.+..=|.+++.+.+.+- +.=+..-|-...| .|.+.+|+..-.+-+.
T Consensus 141 -~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~G-----rvwt~eeL~~i~elc~ 188 (388)
T COG1168 141 -GRYEIDFDALEKAFVDERVKLFILCNPHNPTG-----RVWTKEELRKIAELCL 188 (388)
T ss_pred -CCEEECHHHHHHHHHCCCCCEEEEECCCCCCC-----CCCCHHHHHHHHHHHH
T ss_conf -84775299999998437760899937999998-----6436999999999999
No 247
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=71.71 E-value=6.2 Score=19.51 Aligned_cols=88 Identities=10% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHCCCEE----EE----CCCH-HHHHHHHHHHHHCCCCEEE-CCHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 7898999999987189799----99----7955-7874899898605880670-10666555201023578887653101
Q gi|254780206|r 48 IQNHSAIIHFCQEKHIDLV----VV----GPEL-PLVNGISDALNAAGFKVFG-PSQRAAKLESSKSFAKKFCTKYGIPT 117 (424)
Q Consensus 48 ~~d~~~i~~~a~~~~iDlv----iv----gpE~-pL~~gi~d~l~~~gi~v~G-p~~~aa~le~sK~~~K~~l~~~gIPt 117 (424)
+.|.+++.+.|-+..+++| ++ |+.. .+..-+++.+++.++.+.| ||+. .++.+++++|||.
T Consensus 1 m~~~~~lK~~aa~~A~~~V~~gmviGLGTGSTv~~~I~~L~~~~k~~~l~i~~V~tS~---------~T~~~a~~~Gi~l 71 (228)
T PRK13978 1 MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSN---------KIAFLAKELGIKI 71 (228)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCH---------HHHHHHHHCCCEE
T ss_conf 9868999999999999658999999855579999999999999860798489997999---------9999999879807
Q ss_pred CCCCCCCCCHHHHHHHHCCCCE-EEEEE
Q ss_conf 1112234401111121012420-25630
Q gi|254780206|r 118 ATYQHFSDPMKAKQYVQNKSMP-IVVKA 144 (424)
Q Consensus 118 ~~~~~~~~~~ea~~~~~~~g~P-vVVKp 144 (424)
-....+...+=+.+-++++..- -.||-
T Consensus 72 ~~l~~~~~iDl~iDGADEvd~~lnlIKG 99 (228)
T PRK13978 72 CEINDVDHIDLAIDGADEVDPSLNIIKG 99 (228)
T ss_pred ECCCCCCCCCEEEECCCCCCCCCCEEEE
T ss_conf 6455687346798088641788788987
No 248
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=71.43 E-value=7.9 Score=18.76 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=9.5
Q ss_pred HHHHHHHCCCCCCCCCCH
Q ss_conf 876531011112234401
Q gi|254780206|r 110 CTKYGIPTATYQHFSDPM 127 (424)
Q Consensus 110 l~~~gIPt~~~~~~~~~~ 127 (424)
+++.|.|.-+-...++.+
T Consensus 96 W~~aGlPvErp~~~~~~~ 113 (379)
T PRK08762 96 WRDAGLPLERPTLLTDEQ 113 (379)
T ss_pred HHHCCCCCCCCCCCCHHH
T ss_conf 997799855588688113
No 249
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=71.24 E-value=7.9 Score=18.73 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 5899886588999999998589967899954
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP 32 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p 32 (424)
+|||||-||=-..++.-|..+. +.++.++.
T Consensus 26 ~VlIVGaGGLGs~~a~~La~aG-VG~l~ivD 55 (337)
T PRK12475 26 HVLIIGAGALGAANAEALVRAG-IGKLTIAD 55 (337)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 6999977777899999999828-98699984
No 250
>PRK13435 response regulator; Provisional
Probab=71.21 E-value=8 Score=18.72 Aligned_cols=114 Identities=11% Similarity=0.144 Sum_probs=55.1
Q ss_pred CEEEEECCCH--HHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 9589988658--89999999985899678999549835751170551287898999999987189799997955787489
Q gi|254780206|r 1 MRVLLIGSGG--REHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 1 MkILviGsGg--rEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi 78 (424)
|||||+-.-. |+ .|...|.+.+ ...+. ...+.++.++.++++++|+++.--.-| .
T Consensus 2 mRILIVEDe~~i~~-~l~~~L~~~G-~~vv~-----------------~A~~~~eAl~~~~~~~PDlvllDi~Lp--d-- 58 (141)
T PRK13435 2 LRVLIVEDEALIAL-ELEKLLEEAG-HQVVG-----------------IASTSEQALALGRRAQPDVALVDIRLA--D-- 58 (141)
T ss_pred CEEEEECCCHHHHH-HHHHHHHHCC-CEEEE-----------------EECCHHHHHHHHHCCCCCEEEECCCCC--C--
T ss_conf 78999899899999-9999999879-97999-----------------759999999997659998999788789--9--
Q ss_pred HHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHH
Q ss_conf 98986058806701066655520102357888765310111122344011111210124202563046534300023235
Q gi|254780206|r 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAAT 158 (424)
Q Consensus 79 ~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~ 158 (424)
|. ... ..+|++-...++|.-- .+...+.......-..-+++|| .+
T Consensus 59 -------G~-------~G~------e~~r~l~~~~~ipvI~---lTa~~d~~~~~~aGA~dyl~KP------------f~ 103 (141)
T PRK13435 59 -------GP-------TGV------EVARRLSIDGGVEVIF---MTANPERVGHDFAGALGVIAKP------------YS 103 (141)
T ss_pred -------CC-------CHH------HHHHHHHHCCCCCEEE---EECCHHHHHHHHCCCCCEEECC------------CC
T ss_conf -------99-------899------9999998759983899---9777998601345998589899------------99
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 67788878875144
Q gi|254780206|r 159 VDEATSAIDRCFQQ 172 (424)
Q Consensus 159 ~~e~~~~~~~~~~~ 172 (424)
.+|+.++++.+...
T Consensus 104 ~~eL~~ai~~~~~r 117 (141)
T PRK13435 104 LRQVARALSYVAAR 117 (141)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999971
No 251
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=71.16 E-value=8 Score=18.72 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHCCCEEEEC----CCHHH---HHHHHHHHHH-CCCCEE---ECCHHHHHHHHCCHHHHHHHHHH---HHH
Q ss_conf 8999999987189799997----95578---7489989860-588067---01066655520102357888765---310
Q gi|254780206|r 51 HSAIIHFCQEKHIDLVVVG----PELPL---VNGISDALNA-AGFKVF---GPSQRAAKLESSKSFAKKFCTKY---GIP 116 (424)
Q Consensus 51 ~~~i~~~a~~~~iDlvivg----pE~pL---~~gi~d~l~~-~gi~v~---Gp~~~aa~le~sK~~~K~~l~~~---gIP 116 (424)
.+.|.+..++.+++++++- +| -. +.+++..+++ .++|++ .|+-..++.++-....+.+++.. .-|
T Consensus 75 ~~~I~~~~~~~~P~~I~v~tTC~~e-~IGDDi~~v~~~~~~~~~~pvv~v~tpgf~Gs~~~G~~~a~~ai~~~l~~~~~~ 153 (410)
T cd01968 75 YKAILEIIERYHPKAVFVYSTCVVA-LIGDDIDAVCKTASEKFGIPVIPVHSPGFVGNKNLGNKLACEALLDHVIGTEEP 153 (410)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHH-HHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999985499889997567088-735639999999888619977983289978757778999999999985236788
Q ss_pred CC----------CCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 11----------1122344011111210124202563
Q gi|254780206|r 117 TA----------TYQHFSDPMKAKQYVQNKSMPIVVK 143 (424)
Q Consensus 117 t~----------~~~~~~~~~ea~~~~~~~g~PvVVK 143 (424)
.+ .|..-.|..+.+..++.+|.++...
T Consensus 154 ~~~~~~~vNiig~~~~~~D~~eik~lL~~~Gl~v~~~ 190 (410)
T cd01968 154 EPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVLAS 190 (410)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 8898881899688788766899999999769847774
No 252
>PRK05993 short chain dehydrogenase; Provisional
Probab=71.07 E-value=8 Score=18.70 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=40.5
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHH-HH----HCCEEEECCCCCHHHHHHHHHH------HCCCEEE
Q ss_conf 8998865-889999999985899678999549835-75----1170551287898999999987------1897999
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPG-IA----QHAQCVAIDIQNHSAIIHFCQE------KHIDLVV 67 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g-~~----~~~~~~~i~~~d~~~i~~~a~~------~~iDlvi 67 (424)
|||-|.+ |--.|+|..|.+... .|+..--+.. .. ...+++.+|..|.+++.+++.+ .++|.+|
T Consensus 7 vlITGassGIG~alA~~la~~G~--~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~~~g~id~lv 81 (277)
T PRK05993 7 ILITGCSSGIGAYCAHALQKRGW--RVFATCRKPEDIAALEAEGLEAFYLDYAEPESIAALVAQVLELSGGKLDALF 81 (277)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99925686999999999998799--9999979999999998489819997266779999999999998089706999
No 253
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=71.05 E-value=7.7 Score=18.83 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=23.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 95899886588999999998589967899954
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIP 32 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~p 32 (424)
|||+|||+|----+.||-|++... +|.+..
T Consensus 1 m~VvIIGaGi~G~stA~~La~~G~--~V~vle 30 (416)
T PRK00711 1 MRVVVLGSGVVGVTSAWYLARAGH--EVTVID 30 (416)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCC--CEEEEE
T ss_conf 979999944999999999996899--689996
No 254
>PRK07261 topology modulation protein; Provisional
Probab=70.85 E-value=4.3 Score=20.66 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=18.6
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCE
Q ss_conf 958998865889-999999985899678
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSE 27 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~ 27 (424)
|||+|||+.|-- -.||.+|++.-.+..
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~ 28 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPV 28 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 9899988999868999999999879797
No 255
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=70.80 E-value=8.1 Score=18.66 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=11.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 58998865889999999985899
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPL 24 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~ 24 (424)
||||||+|.+-..++..+.+.+.
T Consensus 127 ~vlIVG~~~~a~~l~~~l~~~~~ 149 (456)
T TIGR03022 127 PAVIIGAGQNAAILYRALQSNPQ 149 (456)
T ss_pred CEEEEECCHHHHHHHHHHHHCCC
T ss_conf 18999787899999999983833
No 256
>PRK10329 glutaredoxin-like protein; Provisional
Probab=70.73 E-value=7.5 Score=18.89 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC---EEEEEEC
Q ss_conf 23578887653101111223440111112101242---0256304
Q gi|254780206|r 104 SFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM---PIVVKAD 145 (424)
Q Consensus 104 ~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~---PvVVKp~ 145 (424)
..+|++|.++||+--.-. ++.-.+|.+++...|| |+|+-.+
T Consensus 15 ~aTKr~L~~~gI~y~~vd-i~~dpea~~~vk~~G~~q~PVV~~~~ 58 (81)
T PRK10329 15 HATKRAMESRGFDFEMIN-VDRVPEAADTLRAQGFRQLPVVIAGD 58 (81)
T ss_pred HHHHHHHHHCCCCEEEEE-CCCCHHHHHHHHHCCCCCCCEEEECC
T ss_conf 989999998799429985-89999999999976985599899699
No 257
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.47 E-value=8.2 Score=18.61 Aligned_cols=23 Identities=4% Similarity=-0.301 Sum_probs=9.7
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 996289899999999998525899
Q gi|254780206|r 378 TALGKTITESRELAYHMVENIDWK 401 (424)
Q Consensus 378 v~~g~~l~eA~~~ay~~i~~I~~~ 401 (424)
+..=+|.++++ ++.+.+++.+-+
T Consensus 486 vit~~d~~~~~-~iv~~~r~~~p~ 508 (558)
T PRK10669 486 LLTIPNGYEAG-EIVASAREKNPD 508 (558)
T ss_pred EEEECCHHHHH-HHHHHHHHHCCC
T ss_conf 99819889999-999999987869
No 258
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=70.33 E-value=8.3 Score=18.59 Aligned_cols=42 Identities=19% Similarity=0.419 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHCCCEEE-ECCCHHH--HHHHHHHHHHCCCCEEE-CC
Q ss_conf 8989999999871897999-9795578--74899898605880670-10
Q gi|254780206|r 49 QNHSAIIHFCQEKHIDLVV-VGPELPL--VNGISDALNAAGFKVFG-PS 93 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iDlvi-vgpE~pL--~~gi~d~l~~~gi~v~G-p~ 93 (424)
.+.+.+.+.++++++|+|| +|--.++ +-.+++ ..|+|++. ||
T Consensus 71 ~~v~~~~~~~~~~~~D~IiavGGGS~iD~AKaia~---~~~~P~i~IPT 116 (366)
T PRK09423 71 NEIDRLVAIAEENGCDVIIGIGGGKTLDTAKAVAD---YLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH---HCCCCEEEECC
T ss_conf 99999999998649998999378388777999999---82899799568
No 259
>PRK07102 short chain dehydrogenase; Provisional
Probab=70.06 E-value=8.4 Score=18.55 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=40.6
Q ss_pred CE-EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHH-H----H-------CCEEEECCCCCHHHHHHHHHHH--CCC
Q ss_conf 95-8998865-8899999999858996789995498357-5----1-------1705512878989999999871--897
Q gi|254780206|r 1 MR-VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGI-A----Q-------HAQCVAIDIQNHSAIIHFCQEK--HID 64 (424)
Q Consensus 1 Mk-ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~-~----~-------~~~~~~i~~~d~~~i~~~a~~~--~iD 64 (424)
|| |||.|.+ |--.|+|..|.+... +|++.--|..- . + .......|..|.+.+.++..+. .+|
T Consensus 1 MK~vlITGassGIG~a~A~~la~~G~--~v~l~~R~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDTERLERIAADLEARGAVAVATHELDILDTARHAAFLDNLPALPD 78 (243)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 99799915745999999999998799--8999989889999999999853586289984340369999999999875379
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780206|r 65 LVVV 68 (424)
Q Consensus 65 lviv 68 (424)
.++.
T Consensus 79 ~~v~ 82 (243)
T PRK07102 79 TVLI 82 (243)
T ss_pred EEEE
T ss_conf 7999
No 260
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=69.89 E-value=3.8 Score=21.04 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=48.1
Q ss_pred HCCCEEEECCCHH-HHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 1897999979557-874899898605880670106665552010235788876531011112234401111121012420
Q gi|254780206|r 61 KHIDLVVVGPELP-LVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP 139 (424)
Q Consensus 61 ~~iDlvivgpE~p-L~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P 139 (424)
+--|++++.|.+- -.+...+.|++.|..++|-|-++. ++-+.|....-+..||-..+|-.+.|... +..+.+|
T Consensus 41 ~P~DFTfVCpTEi~af~~~~~eF~~~g~eVigvS~Ds~--fsH~aW~~~~~~~~gi~~i~~P~iaD~~~--~vs~~yg-- 114 (194)
T COG0450 41 YPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSV--FSHKAWKATIREAGGIGKIKFPMIADPKG--EIARAYG-- 114 (194)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHHCHHHCCCCCCEECCEEECCCH--HHHHHCC--
T ss_conf 46887855840199997652889985998999966848--98999973677509835420066876822--6889709--
Q ss_pred EEEEECCCCCCCCCCCHH
Q ss_conf 256304653430002323
Q gi|254780206|r 140 IVVKADGLCAGKGVVVAA 157 (424)
Q Consensus 140 vVVKp~~~agGkGV~i~~ 157 (424)
|+-|+...+-||++|++
T Consensus 115 -vl~~~~g~a~R~~FIID 131 (194)
T COG0450 115 -VLHPEEGLALRGTFIID 131 (194)
T ss_pred -CCCCCCCCCEEEEEEEC
T ss_conf -80567772046899999
No 261
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=69.80 E-value=8.5 Score=18.52 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=11.4
Q ss_pred EEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 44215776310352000111356
Q gi|254780206|r 191 FALCDGKTAIPFTTARDHKRIHD 213 (424)
Q Consensus 191 ~~i~dG~~~~~l~~~~dyKr~~~ 213 (424)
-.|.|...++-|.-.+|+||+.+
T Consensus 261 ~~f~D~d~vL~Fvns~e~~~La~ 283 (709)
T TIGR02632 261 GTFDDSDAVLEFVNSKEAPRLAA 283 (709)
T ss_pred EEECCCHHHHHHHHHHCCCCHHH
T ss_conf 53237478888762021310565
No 262
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=69.48 E-value=8.6 Score=18.47 Aligned_cols=18 Identities=0% Similarity=-0.119 Sum_probs=7.3
Q ss_pred CCCC--HHHHHHHHHHHCCC
Q ss_conf 8789--89999999871897
Q gi|254780206|r 47 DIQN--HSAIIHFCQEKHID 64 (424)
Q Consensus 47 ~~~d--~~~i~~~a~~~~iD 64 (424)
.+.+ ++..+.-++...+.
T Consensus 38 ~~~~Pll~~~~~~~~~~G~~ 57 (286)
T TIGR00507 38 PPDDPLLEDAVSGFRALGFK 57 (286)
T ss_pred CCCCCHHHHHHHHHHHCCCC
T ss_conf 82360179999999838984
No 263
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=69.42 E-value=8.7 Score=18.46 Aligned_cols=18 Identities=0% Similarity=0.104 Sum_probs=8.9
Q ss_pred CCCCHHHHHHHHHHHCCC
Q ss_conf 878989999999871897
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHID 64 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iD 64 (424)
...+.+..++..+..++.
T Consensus 48 ~~~~l~~~~~~~~~~~~~ 65 (284)
T PRK12549 48 SADALPELLDAAERMGFN 65 (284)
T ss_pred CHHHHHHHHHHHHHCCCC
T ss_conf 978999999998768998
No 264
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=68.89 E-value=8.9 Score=18.38 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=37.2
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCC-----------HHHHHCCEEEEC-CCCCHHHHHHHHHHHCCCEEE
Q ss_conf 8998865-8899999999858996789995498-----------357511705512-878989999999871897999
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGN-----------PGIAQHAQCVAI-DIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN-----------~g~~~~~~~~~i-~~~d~~~i~~~a~~~~iDlvi 67 (424)
|||-|++ |---|||+++.+-.. +|+++--| |++.. ...++ |.....++++|.+++-+.+-+
T Consensus 8 iLITGG~sGIGl~lak~f~elgN--~VIi~gR~e~~L~e~~~~~p~~~t--~v~Dv~d~~~~~~lvewLkk~~P~lNv 81 (245)
T COG3967 8 ILITGGASGIGLALAKRFLELGN--TVIICGRNEERLAEAKAENPEIHT--EVCDVADRDSRRELVEWLKKEYPNLNV 81 (245)
T ss_pred EEEECCCCHHHHHHHHHHHHHCC--EEEEECCCHHHHHHHHHCCCCHHE--EEECCCCHHHHHHHHHHHHHHCCCHHE
T ss_conf 99937964365999999998389--799965749999999860941315--651320356699999999862986113
No 265
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=68.80 E-value=8.9 Score=18.37 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=61.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHCCEEEEC-------CCCCHHHHHHHHHHHCCCEEEEC-CCH
Q ss_conf 5899886588999999998589967899954-98357511705512-------87898999999987189799997-955
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP-GNPGIAQHAQCVAI-------DIQNHSAIIHFCQEKHIDLVVVG-PEL 72 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p-gN~g~~~~~~~~~i-------~~~d~~~i~~~a~~~~iDlvivg-pE~ 72 (424)
||||+|-||=-..++.-|..+. +.++.++. +.-....+...+.+ -....+...+..++.+++.-+.- .+.
T Consensus 21 ~VlVvG~GGLG~~v~~~La~aG-Vg~i~ivD~D~Ve~sNL~RQ~l~~~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~ 99 (198)
T cd01485 21 KVLIIGAGALGAEIAKNLVLAG-IDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8999877889999999999749-986999959963533577575026541116872999999999977999779998224
Q ss_pred H--HHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 7--874899898605880670106665552010235788876531011
Q gi|254780206|r 73 P--LVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTA 118 (424)
Q Consensus 73 p--L~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~ 118 (424)
. ...-..+.++...+-+-+..-..+ +...-+++.++++|--
T Consensus 100 ~~~~~~n~~~~~~~~DlVvd~~dn~~~-----r~~in~~c~~~~iPlI 142 (198)
T cd01485 100 SLSNDSNIEEYLQKFTLVIATEENYER-----TAKVNDVCRKHHIPFI 142 (198)
T ss_pred CCCCHHHHHHHHHCCCEEEECCCCHHH-----HHHHHHHHHHHCCCEE
T ss_conf 457786899998489999999999999-----9999999999299889
No 266
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=68.36 E-value=9.1 Score=18.31 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=15.7
Q ss_pred CEEEEECCCHHHHHHHHHHHH
Q ss_conf 958998865889999999985
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQ 21 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~ 21 (424)
|||.+||+|----.|+..|++
T Consensus 1 mkIv~lgGGtG~~~llrGLk~ 21 (309)
T PRK13606 1 MMITVLSGGTGTPKLLRGLKE 21 (309)
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 969998687578999999885
No 267
>KOG0256 consensus
Probab=68.17 E-value=8.6 Score=18.48 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 98999999999985
Q gi|254780206|r 383 TITESRELAYHMVE 396 (424)
Q Consensus 383 ~l~eA~~~ay~~i~ 396 (424)
+++-|-++.+.-++
T Consensus 447 t~~~am~Ri~~~~~ 460 (471)
T KOG0256 447 TLEVAMRRLKQFLD 460 (471)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999987
No 268
>PRK05884 short chain dehydrogenase; Provisional
Probab=68.00 E-value=9.2 Score=18.26 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=33.4
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHH-H----H-CCEEEECCCCCHHHHHHHHH
Q ss_conf 958998865-8899999999858996789995498357-5----1-17055128789899999998
Q gi|254780206|r 1 MRVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGI-A----Q-HAQCVAIDIQNHSAIIHFCQ 59 (424)
Q Consensus 1 MkILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~-~----~-~~~~~~i~~~d~~~i~~~a~ 59 (424)
|||||-|++ |--.|++.+|.+... +|.+..-|... . + ..+.+..|..|.+.+.+...
T Consensus 1 ~~VlVTGgs~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~el~~~~~~~d~~d~~~~~~~~~ 64 (223)
T PRK05884 1 MEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARG 64 (223)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 9399987887999999999998799--999995987899999853487689985278899999999
No 269
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.72 E-value=9.3 Score=18.22 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=48.5
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHH------HHC-CEEEECCC---CCHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 9988658899999999858996789995498357------511-70551287---8989999999871897999979557
Q gi|254780206|r 4 LLIGSGGREHALAWKIAQSPLLSELWSIPGNPGI------AQH-AQCVAIDI---QNHSAIIHFCQEKHIDLVVVGPELP 73 (424)
Q Consensus 4 LviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~------~~~-~~~~~i~~---~d~~~i~~~a~~~~iDlvivgpE~p 73 (424)
.|+|-|.---+.+.-|.+... +|++...++.. ..+ .+.+.+.. .+......+ -.++|+||+.|-.|
T Consensus 4 ~V~GlG~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~--~~~~d~vV~SPGI~ 79 (459)
T PRK02705 4 HVIGLGRSGIAAARLLKAQGW--EVVVSERNDSPELLERQQELEQEGITVELGKPLELESFQPW--LDQPDLVVVSPGIP 79 (459)
T ss_pred EEEEECHHHHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHH--CCCCCEEEECCCCC
T ss_conf 999548999999999997899--59999898992347899999875986981676664301331--16788899899649
Q ss_pred HHHHHHHHHHHCCCCEEECCHHHH
Q ss_conf 874899898605880670106665
Q gi|254780206|r 74 LVNGISDALNAAGFKVFGPSQRAA 97 (424)
Q Consensus 74 L~~gi~d~l~~~gi~v~Gp~~~aa 97 (424)
...-....+++.|+|+++--.-+.
T Consensus 80 ~~~p~~~~a~~~gi~i~~eiel~~ 103 (459)
T PRK02705 80 WDHPTLVELREKGIEVIGEMELAW 103 (459)
T ss_pred CCCHHHHHHHHCCCCEECHHHHHH
T ss_conf 989999999987997214999999
No 270
>PRK00536 speE spermidine synthase; Provisional
Probab=67.66 E-value=9.4 Score=18.21 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=14.0
Q ss_pred HCCCEEEECCCHHH--HHHHHHHHHHCCCCEE
Q ss_conf 18979999795578--7489989860588067
Q gi|254780206|r 61 KHIDLVVVGPELPL--VNGISDALNAAGFKVF 90 (424)
Q Consensus 61 ~~iDlvivgpE~pL--~~gi~d~l~~~gi~v~ 90 (424)
++-|.+|+.+..|. .+++..+|...||-|.
T Consensus 138 ~~fDvIIvDsl~~~~~~~~l~~~L~~~Gi~v~ 169 (262)
T PRK00536 138 KKYDLIICLQEPDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 76688998899980549999998589989998
No 271
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=67.57 E-value=9.4 Score=18.20 Aligned_cols=96 Identities=10% Similarity=0.071 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHCCCEEEEC----CCHH--HHHHHHHHHHHC-----CCCEE---ECCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 8999999987189799997----9557--874899898605-----88067---01066655520102357888765310
Q gi|254780206|r 51 HSAIIHFCQEKHIDLVVVG----PELP--LVNGISDALNAA-----GFKVF---GPSQRAAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 51 ~~~i~~~a~~~~iDlvivg----pE~p--L~~gi~d~l~~~-----gi~v~---Gp~~~aa~le~sK~~~K~~l~~~gIP 116 (424)
.++|.+..+..+++++++- +|.- =+.+++..+++. |+|++ .|+-..+...+-+...+.+++..--|
T Consensus 70 ~~~I~~~~~~y~P~~I~V~tTC~se~IGDDi~~vv~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~Gy~~a~~aii~~~~~~ 149 (417)
T cd01966 70 EEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAIIEALVEP 149 (417)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999852987799965531433077789999999974465579846851687645637889999999999874368
Q ss_pred C--------------CCCCCCCCCHHHHHHHHCCCCEEEEEECC
Q ss_conf 1--------------11122344011111210124202563046
Q gi|254780206|r 117 T--------------ATYQHFSDPMKAKQYVQNKSMPIVVKADG 146 (424)
Q Consensus 117 t--------------~~~~~~~~~~ea~~~~~~~g~PvVVKp~~ 146 (424)
. ..+..-.|.++++..++.+|.++++=||-
T Consensus 150 ~~~~~~~~~~iNli~g~~~~pgDl~eik~ll~~~Gl~~~ilpD~ 193 (417)
T cd01966 150 GSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPIILPDL 193 (417)
T ss_pred CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 78777778835881564688777999999999829956982365
No 272
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=67.38 E-value=7.5 Score=18.91 Aligned_cols=27 Identities=37% Similarity=0.804 Sum_probs=21.4
Q ss_pred EEEEECCC--HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 58998865--889999999985899678999
Q gi|254780206|r 2 RVLLIGSG--GREHALAWKIAQSPLLSELWS 30 (424)
Q Consensus 2 kILviGsG--grEhAl~~~l~~s~~~~~v~~ 30 (424)
+|-|||+| |-|- ||.|.+...-..+|=
T Consensus 2 ~v~VIGgGLAGsEA--AWqlA~~G~~ViLyE 30 (444)
T TIGR00137 2 KVIVIGGGLAGSEA--AWQLAKEGVRVILYE 30 (444)
T ss_pred EEEEECCCCHHHHH--HHHHHHCCCCEEEEE
T ss_conf 36897188534689--999984897279975
No 273
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=67.27 E-value=4.2 Score=20.72 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=6.7
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 788876531011112
Q gi|254780206|r 107 KKFCTKYGIPTATYQ 121 (424)
Q Consensus 107 K~~l~~~gIPt~~~~ 121 (424)
+++|.+.+||..-+.
T Consensus 79 ~~l~~~l~IP~~~~~ 93 (395)
T PHA02117 79 RRVWDMFNIPENARQ 93 (395)
T ss_pred HHHHHHCCCCHHHHH
T ss_conf 345654399899999
No 274
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=67.03 E-value=9.6 Score=18.13 Aligned_cols=113 Identities=17% Similarity=0.278 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHH---HHCCCEEEECCCHHHHHHHHHHHHHCCCCEE-------------------ECCHHHHHHHH--
Q ss_conf 28789899999998---7189799997955787489989860588067-------------------01066655520--
Q gi|254780206|r 46 IDIQNHSAIIHFCQ---EKHIDLVVVGPELPLVNGISDALNAAGFKVF-------------------GPSQRAAKLES-- 101 (424)
Q Consensus 46 i~~~d~~~i~~~a~---~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~-------------------Gp~~~aa~le~-- 101 (424)
|+..|...+..+|+ ++++.++=. -|-++.|++.|++|. -|.-.+.-|..
T Consensus 5 ISVsdKt~l~~la~~L~~~g~~IisT-------gGT~~~L~~~gi~v~~Vs~~TgfpEil~GRVKTLHPkI~gGIL~~r~ 77 (187)
T cd01421 5 ISVSDKTGLVEFAKELVELGVEILST-------GGTAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRD 77 (187)
T ss_pred EEEECCCCHHHHHHHHHHCCCEEEEC-------HHHHHHHHHCCCCEEEHHHHCCCHHHHCCCCCCCCCHHHHHHCCCCC
T ss_conf 98645327799999999889889978-------08999998668860669873197377589765357055440215666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCC-------------CCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 10235788876531011112234-------------40111112101242025630465343000232356778887887
Q gi|254780206|r 102 SKSFAKKFCTKYGIPTATYQHFS-------------DPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDR 168 (424)
Q Consensus 102 sK~~~K~~l~~~gIPt~~~~~~~-------------~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~ 168 (424)
++.- ++ |+++|||.-..-++. +.+++.+.+ .+|-|..|++.- ---+-|.++.+.++....++.
T Consensus 78 ~~~h-~~-~~~~~i~~IDlVvvNLYPF~~~v~~~~~~~~~~IEnI-DIGGpsliRAAA-KN~~~V~v~~dp~dY~~~i~~ 153 (187)
T cd01421 78 NEEH-KD-LEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIENI-DIGGPSLLRAAA-KNYKDVTVLVDPADYQKVLEE 153 (187)
T ss_pred CHHH-HH-HHHCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHC-CCCCHHHHHHHH-HCCCCEEEECCHHHHHHHHHH
T ss_conf 6358-99-9986999702799846577777555899989999844-677489999998-268812876799999999999
Q ss_pred H
Q ss_conf 5
Q gi|254780206|r 169 C 169 (424)
Q Consensus 169 ~ 169 (424)
.
T Consensus 154 l 154 (187)
T cd01421 154 L 154 (187)
T ss_pred H
T ss_conf 9
No 275
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=66.94 E-value=9.7 Score=18.11 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=32.7
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEEEECCCHHHHHCCEEE---ECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 958998865889-99999998589967899954983575117055---12878989999999871897999
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELWSIPGNPGIAQHAQCV---AIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~---~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
|||-|||.-|+- +.|....++-.+ +|-+.--||.-...-+.+ .-|+-|.+.+.+.. ...|.||
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l--~g~DaVI 67 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAARQGVTILQKDIFDLTSLASDL--AGHDAVI 67 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCC--EEEEEEECHHHCCCCCCCEEECCCCCCHHHHHHHH--CCCCEEE
T ss_conf 9078995374567999999986798--04899807676652235302000222745667663--5876699
No 276
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=66.86 E-value=9.7 Score=18.10 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCEEEEECCCHHHHH--CCEE--EECCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 9999985899678999549835751--1705--512878989999999871897999979
Q gi|254780206|r 15 LAWKIAQSPLLSELWSIPGNPGIAQ--HAQC--VAIDIQNHSAIIHFCQEKHIDLVVVGP 70 (424)
Q Consensus 15 l~~~l~~s~~~~~v~~~pgN~g~~~--~~~~--~~i~~~d~~~i~~~a~~~~iDlvivgp 70 (424)
++++|.+- -.++|..+|-.-+.. ...+ +.-.....+.++++.++.+||+||--|
T Consensus 18 ~ak~l~~l--Gf~i~AT~GTa~~L~~~Gi~~~~v~k~~e~~p~i~d~i~~~~i~lVINt~ 75 (110)
T cd01424 18 IAKRLAEL--GFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTP 75 (110)
T ss_pred HHHHHHHC--CCEEEECCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECC
T ss_conf 99999988--99999871699999864986403300567997689999779358999778
No 277
>PRK06182 short chain dehydrogenase; Validated
Probab=66.81 E-value=9.7 Score=18.10 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=46.3
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHH-H----HCCEEEECCCCCHHHHHHHHHHH-----CCCEEEECCC
Q ss_conf 8998865-8899999999858996789995498357-5----11705512878989999999871-----8979999795
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGI-A----QHAQCVAIDIQNHSAIIHFCQEK-----HIDLVVVGPE 71 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~-~----~~~~~~~i~~~d~~~i~~~a~~~-----~iDlvivgpE 71 (424)
+||-|++ |--.|++..|.+... +|+..--|... . ...+.+..|.+|.+++.+++.+. +||..|
T Consensus 6 ~lITGassGIG~a~a~~la~~G~--~V~~~~r~~~~l~~l~~~~~~~~~~Dvt~~~~v~~~~~~i~~~~g~iDiLV---- 79 (273)
T PRK06182 6 ALVTGASSGIGKATARKLIAEGF--TVYGAARRVDKMEDLASLGIHPLALDVTDEASMKAAVATILAEEGRIDVLV---- 79 (273)
T ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE----
T ss_conf 99906320999999999998799--899997989999999967997999858999999999999999839988775----
Q ss_pred HHHHHHHHHHHHHCCCCEEECCHHHH
Q ss_conf 57874899898605880670106665
Q gi|254780206|r 72 LPLVNGISDALNAAGFKVFGPSQRAA 97 (424)
Q Consensus 72 ~pL~~gi~d~l~~~gi~v~Gp~~~aa 97 (424)
..+|+..+||-.+..
T Consensus 80 -----------NNAG~~~~~~~~~~~ 94 (273)
T PRK06182 80 -----------NNAGYGSYGAIEDVP 94 (273)
T ss_pred -----------ECCCCCCCCCHHHHH
T ss_conf -----------058677787488731
No 278
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating); InterPro: IPR013357 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NAD(P) as a cofactor. In eukaryotes, at least twenty distinct aldehyde dehydrogenase families have been classified . Many aldehyde dehydrogenases have also been found in prokaryotic species. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase, though these residues are not necessarily conserved in all the enzymes of this family. The acetaldehyde dehydrogenase family (1.2.1.10 from EC) of bacterial enzymes catalyse the formation of acetyl-CoA from acetaldehyde in the degradation of phenols, cresols and catechol . Proteins in this entry occur in bacterial species and are annotated as probable acetaldehyde dehydrogenases, though this function has not been experimentally verified..
Probab=65.74 E-value=10 Score=17.96 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCC-EEEECCCHHH------HHHHHHHHHHCC
Q ss_conf 9999999871897-9999795578------748998986058
Q gi|254780206|r 52 SAIIHFCQEKHID-LVVVGPELPL------VNGISDALNAAG 86 (424)
Q Consensus 52 ~~i~~~a~~~~iD-lvivgpE~pL------~~gi~d~l~~~g 86 (424)
.+|.++......| .+|+.+|... -+.|+++|++.|
T Consensus 230 ~Av~~Il~SKtFDnGtICASEQSvivE~~n~~aVv~Elk~QG 271 (528)
T TIGR02518 230 KAVRKILDSKTFDNGTICASEQSVIVEKCNKDAVVEELKKQG 271 (528)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHCC
T ss_conf 999887402566776165313506861577268999998524
No 279
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain; InterPro: IPR005974 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model IPR005972 from INTERPRO.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=65.72 E-value=9.8 Score=18.08 Aligned_cols=125 Identities=15% Similarity=0.259 Sum_probs=50.0
Q ss_pred HHHHHHHCCCCEEECCHHHHHHHHCCHHH-HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 99898605880670106665552010235-78887653101111223440111112101242025630465343000232
Q gi|254780206|r 78 ISDALNAAGFKVFGPSQRAAKLESSKSFA-KKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVA 156 (424)
Q Consensus 78 i~d~l~~~gi~v~Gp~~~aa~le~sK~~~-K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~ 156 (424)
|.++|+..||.|+. ...+|=++= =+.|.++.+..-+...-+++- |.+.-++.|-| =+|=|+ =|..-
T Consensus 228 l~~Yf~rmGI~Vls------tFTGng~yD~lr~MHrA~Lnvv~CaRSa~YI-a~eL~~RYGiP-rldiD~----fGf~y- 294 (468)
T TIGR01284 228 LKKYFERMGIQVLS------TFTGNGSYDELRAMHRAKLNVVECARSAEYI-ANELKERYGIP-RLDIDS----FGFEY- 294 (468)
T ss_pred HHHHHHHCCCEEEE------EECCCCCHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHCCCC-CEEECC----CCHHH-
T ss_conf 99999863945887------6358887056677766403043211105799-99865306886-121133----46077-
Q ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHH-CCCCCEEEE-CCCCCCCCCCCC---CCCCCCCCCCCC
Q ss_conf 356778887887514--4531777887752-057523442-157763103520---001113566544
Q gi|254780206|r 157 ATVDEATSAIDRCFQ--QINSTVIIEEYLE-GFEVSFFAL-CDGKTAIPFTTA---RDHKRIHDGDIG 217 (424)
Q Consensus 157 ~~~~e~~~~~~~~~~--~~~~~VliEefl~-G~E~Sv~~i-~dG~~~~~l~~~---~dyKr~~~~d~G 217 (424)
..+-..++-.-|+ +..++||=||+-. +||+...== ..||.+.+++-= .-.-|.-|.|+|
T Consensus 295 --~a~~lrkIg~fFGIeerae~~I~ee~ak~kPeldwyKerL~GKkv~~w~GGpklWHw~~~~EdelG 360 (468)
T TIGR01284 295 --LAENLRKIGEFFGIEERAERVIEEEVAKWKPELDWYKERLRGKKVAVWSGGPKLWHWARSVEDELG 360 (468)
T ss_pred --HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHCC
T ss_conf --887788762027970378898997777508851014654178779994686812236733132468
No 280
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=65.37 E-value=10 Score=17.91 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=7.4
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 1111210124202563
Q gi|254780206|r 128 KAKQYVQNKSMPIVVK 143 (424)
Q Consensus 128 ea~~~~~~~g~PvVVK 143 (424)
+..+++++.+.|++|=
T Consensus 80 eF~~~~~~~~ip~~Iv 95 (219)
T PRK09552 80 EFVQFVNENNISFYVI 95 (219)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999999859979998
No 281
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=65.24 E-value=10 Score=17.89 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=65.1
Q ss_pred CEEEEECCCHH--HHHHHHHHHHCCC--CCEEEEECCCHHH----HH--------CC-EEEECCCCCHHHHHHHHHHHCC
Q ss_conf 95899886588--9999999985899--6789995498357----51--------17-0551287898999999987189
Q gi|254780206|r 1 MRVLLIGSGGR--EHALAWKIAQSPL--LSELWSIPGNPGI----AQ--------HA-QCVAIDIQNHSAIIHFCQEKHI 63 (424)
Q Consensus 1 MkILviGsGgr--EhAl~~~l~~s~~--~~~v~~~pgN~g~----~~--------~~-~~~~i~~~d~~~i~~~a~~~~i 63 (424)
|||-+||+|+- .--|.+.|.+++. ..++.+..=++.- .. .. .......+|.++.+ ...
T Consensus 1 ~KI~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did~erl~~v~~l~~~~~~~~~~~~~v~~Ttd~~eAl-----~gA 75 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREAL-----DGA 75 (423)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH-----CCC
T ss_conf 979999986487599999999608457899899988999999999999999998519981899968999984-----689
Q ss_pred CEEEE----CCCHHHHHHHHHH--HHHCCC-----CEEECCHHHHHHHHC---CHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 79999----7955787489989--860588-----067010666555201---023578887653101111223440111
Q gi|254780206|r 64 DLVVV----GPELPLVNGISDA--LNAAGF-----KVFGPSQRAAKLESS---KSFAKKFCTKYGIPTATYQHFSDPMKA 129 (424)
Q Consensus 64 Dlviv----gpE~pL~~gi~d~--l~~~gi-----~v~Gp~~~aa~le~s---K~~~K~~l~~~gIPt~~~~~~~~~~ea 129 (424)
|+|+. |.-..-. .|. =.+.|+ -+.||.--+--|-+= -..+|+ ++++- |-+..-.|+|....
T Consensus 76 DfV~~~irvGg~~~r~---~De~Iplk~Gv~~~vGET~G~GG~~~alRtIPv~leia~~-i~e~~-P~AwiiNytNP~~i 150 (423)
T cd05297 76 DFVINTIQVGGHEYTE---TDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARD-IEELC-PDAWLLNYANPMAE 150 (423)
T ss_pred CEEEEEEEECCCHHHH---HHHHHHHHCCCCEEECCCCCHHHHHHHHCCHHHHHHHHHH-HHHHC-CCCEEEECCCHHHH
T ss_conf 9999987746824889---8884898839660445654775899986228999999999-99879-98389976788899
Q ss_pred H-HHHHCCCCEEEEEECCCCCC
Q ss_conf 1-12101242025630465343
Q gi|254780206|r 130 K-QYVQNKSMPIVVKADGLCAG 150 (424)
Q Consensus 130 ~-~~~~~~g~PvVVKp~~~agG 150 (424)
. +++.+ -+| +|-.|+|-+
T Consensus 151 vteal~r-~~~--~k~iGlC~~ 169 (423)
T cd05297 151 LTWALNR-YTP--IKTVGLCHG 169 (423)
T ss_pred HHHHHHH-HCC--CCEEEECCC
T ss_conf 9999997-389--978987977
No 282
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=65.23 E-value=10 Score=17.89 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=72.1
Q ss_pred HHHHHHH-CCCCCEEEEECCCHHHH----H---CCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 9999985-89967899954983575----1---17055128789899999998718979999795578748998986058
Q gi|254780206|r 15 LAWKIAQ-SPLLSELWSIPGNPGIA----Q---HAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAG 86 (424)
Q Consensus 15 l~~~l~~-s~~~~~v~~~pgN~g~~----~---~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~g 86 (424)
|..+|++ .|.+.-+...--+-|.. . .+.+.+......-.+-+|....++|++|+ .|..||--+...+...|
T Consensus 68 Lv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii-~EtElWPnli~e~~~~~ 146 (419)
T COG1519 68 LVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLII-METELWPNLINELKRRG 146 (419)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE-EECCCCHHHHHHHHHCC
T ss_conf 99999976899878999527637999998769870899657676688999997428987999-80013678999998769
Q ss_pred CCEEECCHHHHHHHHCCHHHHH----HHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 8067010666555201023578----88765310111122344011111210124202
Q gi|254780206|r 87 FKVFGPSQRAAKLESSKSFAKK----FCTKYGIPTATYQHFSDPMKAKQYVQNKSMPI 140 (424)
Q Consensus 87 i~v~Gp~~~aa~le~sK~~~K~----~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~Pv 140 (424)
+|.+=-+.+ | ++|+|.+- .+.+.=...-....+.|.+++..|. ++|.+-
T Consensus 147 ~p~~LvNaR---L-S~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~-~LGa~~ 199 (419)
T COG1519 147 IPLVLVNAR---L-SDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFR-SLGAKP 199 (419)
T ss_pred CCEEEEEEE---E-CHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHH-HCCCCC
T ss_conf 989999423---0-2325777987789999999742333454888899999-649861
No 283
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=64.79 E-value=11 Score=17.83 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=21.5
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCC
Q ss_conf 958998865889-99999998589967
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLS 26 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~ 26 (424)
|||.|.|..||- ..|++++.+++...
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~ 29 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLE 29 (266)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCE
T ss_conf 369997578727899999985289946
No 284
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=64.63 E-value=11 Score=17.81 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=18.6
Q ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCCEEEEE
Q ss_conf 958998865889999999985-8996789995
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQ-SPLLSELWSI 31 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~-s~~~~~v~~~ 31 (424)
|||+|||+|---...|..+++ .+.. +|.+.
T Consensus 1 MkvVIIG~G~AG~saA~~l~~~~~~~-~I~v~ 31 (443)
T PRK09564 1 MKIIIIGGTAAGTSAAAKAKRLNKEL-EIVVY 31 (443)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCC-CEEEE
T ss_conf 96999996099999999998149399-99999
No 285
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=64.57 E-value=11 Score=17.81 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 8887653101111223440111112101242025630465343000232
Q gi|254780206|r 108 KFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVA 156 (424)
Q Consensus 108 ~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~ 156 (424)
++|.++||| |.++-=...|.+.+...|+|+--+- -++++.++
T Consensus 100 ~~L~~~GI~---~EvvPGvTsA~Aa~a~aGiPlThR~----~~~s~~f~ 141 (242)
T TIGR01469 100 EALAEAGIP---FEVVPGVTSAIAAAAYAGIPLTHRG----LARSVTFV 141 (242)
T ss_pred HHHHHCCCC---EEEECCCCHHHHHHHHCCCCCCCCC----CCCCEEEE
T ss_conf 999966897---9873881167789985589954130----21731688
No 286
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=64.51 E-value=11 Score=17.80 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHH-CCCCEEEEEECCCCC
Q ss_conf 10235788876531011112234401-1111210-124202563046534
Q gi|254780206|r 102 SKSFAKKFCTKYGIPTATYQHFSDPM-KAKQYVQ-NKSMPIVVKADGLCA 149 (424)
Q Consensus 102 sK~~~K~~l~~~gIPt~~~~~~~~~~-ea~~~~~-~~g~PvVVKp~~~ag 149 (424)
+..+ ++.++++||.......-++.+ -+.+.++ .-||=+.|=-.|..|
T Consensus 127 ~~~~-~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gfiY~vs~~GvTG 175 (256)
T PRK13111 127 AEEF-RAAAKKHGIDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTG 175 (256)
T ss_pred HHHH-HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 8999-999997598089996999988999999962698599985677678
No 287
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=64.50 E-value=9.7 Score=18.11 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=15.7
Q ss_pred EEEECCCHH----HHHHHHHHHHCCCCCEEE
Q ss_conf 899886588----999999998589967899
Q gi|254780206|r 3 VLLIGSGGR----EHALAWKIAQSPLLSELW 29 (424)
Q Consensus 3 ILviGsGgr----EhAl~~~l~~s~~~~~v~ 29 (424)
|-|||.=.| +|.+-+-|.+.. --++|
T Consensus 13 vavigas~~~~~vg~~i~~nL~~~g-~g~i~ 42 (598)
T COG1042 13 IAVIGASERPGKLGYEILRNLLEYG-QGKIY 42 (598)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CCCEE
T ss_conf 7887146875215799999998568-88557
No 288
>KOG0243 consensus
Probab=64.35 E-value=11 Score=17.78 Aligned_cols=81 Identities=31% Similarity=0.487 Sum_probs=49.8
Q ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHH----HHHHHHHHHCCC-CH--------HHHHHHHHHCCCCCEEEEC---CCCC
Q ss_conf 124202563046534300023235677----888788751445-31--------7778877520575234421---5776
Q gi|254780206|r 135 NKSMPIVVKADGLCAGKGVVVAATVDE----ATSAIDRCFQQI-NS--------TVIIEEYLEGFEVSFFALC---DGKT 198 (424)
Q Consensus 135 ~~g~PvVVKp~~~agGkGV~i~~~~~e----~~~~~~~~~~~~-~~--------~VliEefl~G~E~Sv~~i~---dG~~ 198 (424)
+..-|+||.-++. +|-|.+-.+.+. -.-.+++.|+-. .+ .=+|+|.|.|.-.++||.. -|++
T Consensus 66 ~~~s~~VVs~~~~--~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKT 143 (1041)
T KOG0243 66 KSKSSVVVSCDGI--RKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKT 143 (1041)
T ss_pred HCCCCEEEECCCC--CCEEEEECCCCCCCCCCEEECCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCE
T ss_conf 0379758961897--61688732666531110000112227526589999999889999986247725998647888852
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31035200011135665444443
Q gi|254780206|r 199 AIPFTTARDHKRIHDGDIGPNTG 221 (424)
Q Consensus 199 ~~~l~~~~dyKr~~~~d~GpnTG 221 (424)
|..-+-.++++ ++.++-+|
T Consensus 144 yTMeG~~~~~~----g~l~~~aG 162 (1041)
T KOG0243 144 YTMEGGERKKN----GELPSEAG 162 (1041)
T ss_pred EEEECCCCCCC----CCCCCCCC
T ss_conf 46236754345----88996578
No 289
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=63.59 E-value=11 Score=17.68 Aligned_cols=133 Identities=19% Similarity=0.214 Sum_probs=65.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEE-EECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 5899886588999999998589967899-954983575117055128789899999998718979999795578748998
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELW-SIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISD 80 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~-~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d 80 (424)
+|.|-|.|---..+++.|.+... +|. ++.-+.++ ++-+-.|.+++.++..+++--.-+++.+. +. .+
T Consensus 33 ~v~IqG~GnVG~~~a~~L~~~Ga--kvv~vsD~~G~i------~~~~Gld~~~l~~~~~~~~~~~~~~~~~~-~~---~~ 100 (227)
T cd01076 33 RVAIQGFGNVGSHAARFLHEAGA--KVVAVSDSDGTI------YNPDGLDVPALLAYKKEHGSVLGFPGAER-IT---NE 100 (227)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCEE------ECCCCCCHHHHHHHHHHCCCCCCCCCCCC-CC---CC
T ss_conf 99998988999999999998799--599998478738------88888999999999996598026788753-89---62
Q ss_pred HHHHCCCCEEECCHHHHHHH---HCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 98605880670106665552---01023578887653101111223440111112101242025630465343000232
Q gi|254780206|r 81 ALNAAGFKVFGPSQRAAKLE---SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVA 156 (424)
Q Consensus 81 ~l~~~gi~v~Gp~~~aa~le---~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~ 156 (424)
.+.....-+|-|.+..-.|. -.+.-+|-+.+-+|-|+. .+|.+.+.+-| +++=||-++-.-||.+.
T Consensus 101 ~~~~~~~DI~iP~A~~~~I~~~~a~~l~ak~I~EgAN~p~t--------~~A~~~L~~rg--I~viPD~laNaGGVivS 169 (227)
T cd01076 101 ELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTT--------PEADEILHERG--VLVVPDILANAGGVTVS 169 (227)
T ss_pred CHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEECCCCCCC--------HHHHHHHHHCC--CEEECCHHHCCCCEEEE
T ss_conf 31047887898777669779999854476199845789989--------88999999886--98968077448774455
No 290
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=63.25 E-value=11 Score=17.64 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=27.2
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9589988-658899999999858996789995498
Q gi|254780206|r 1 MRVLLIG-SGGREHALAWKIAQSPLLSELWSIPGN 34 (424)
Q Consensus 1 MkILviG-sGgrEhAl~~~l~~s~~~~~v~~~pgN 34 (424)
|||-||| .|.---++|..|.+++..+++....=|
T Consensus 1 mKV~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 98999999981899999999729997769998277
No 291
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=63.22 E-value=11 Score=17.63 Aligned_cols=117 Identities=20% Similarity=0.336 Sum_probs=60.4
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCHHH------H-HCCEE-------EECC-CCCHHHHHHHHHHHCCC
Q ss_conf 95899886-58899999999858996789995498357------5-11705-------5128-78989999999871897
Q gi|254780206|r 1 MRVLLIGS-GGREHALAWKIAQSPLLSELWSIPGNPGI------A-QHAQC-------VAID-IQNHSAIIHFCQEKHID 64 (424)
Q Consensus 1 MkILviGs-GgrEhAl~~~l~~s~~~~~v~~~pgN~g~------~-~~~~~-------~~i~-~~d~~~i~~~a~~~~iD 64 (424)
|||.|||. |.--.+++..|...+...++....-|... + .+... ..+. ..|.+. -...|
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~------~~daD 74 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD------VAGSD 74 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEECCCHHH------HCCCC
T ss_conf 989999999769999999998379987599960556434231123554503433688767982798899------68999
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHH---HHHHHHCCCCCCCCCCHHHHHHHH--CCCCE
Q ss_conf 9999795578748998986058806701066655520102357888---765310111122344011111210--12420
Q gi|254780206|r 65 LVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC---TKYGIPTATYQHFSDPMKAKQYVQ--NKSMP 139 (424)
Q Consensus 65 lvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l---~~~gIPt~~~~~~~~~~ea~~~~~--~~g~P 139 (424)
.||+. +|.. ++.| .+ +...+..+-..+|++. .+++ |.+..-.++|.-+...++. ..|||
T Consensus 75 ivVit------AG~~---rk~g-----~t-R~dLl~~Na~I~~~i~~~i~~~~-p~~ivivvtNPvDv~t~~~~k~sg~p 138 (309)
T cd05294 75 IVIIT------AGVP---RKEG-----MS-RLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKESGFD 138 (309)
T ss_pred EEEEC------CCCC---CCCC-----CC-HHHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 99987------8988---9959-----98-78999989999999998764269-98499976896577999999966988
No 292
>TIGR00284 TIGR00284 dihydropteroate synthase-related protein; InterPro: IPR005236 The proteins of this family have been found so far only in the four archaeal species. The central region of the proteins shows considerable homology to the amino-terminal half of dihydropteroate synthases. .
Probab=63.07 E-value=11 Score=17.62 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=53.6
Q ss_pred CEEEEECCCHHHHHHHHHHH-HCCCCCEEEEECCCHHHHHCCEEEEC-CCCCHHHHHHHHHHHCCCEEEE-CCCHHHHHH
Q ss_conf 95899886588999999998-58996789995498357511705512-8789899999998718979999-795578748
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIA-QSPLLSELWSIPGNPGIAQHAQCVAI-DIQNHSAIIHFCQEKHIDLVVV-GPELPLVNG 77 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~-~s~~~~~v~~~pgN~g~~~~~~~~~i-~~~d~~~i~~~a~~~~iDlviv-gpE~pL~~g 77 (424)
||||||-|---+--+-..++ ++.+--+|.++|= +-.+.+..+..+ +....+..++-+++...|++++ | |+-|
T Consensus 1 ~kvl~iTg~lA~~~~~~~~kn~~d~~~ev~vln~-~va~~lstk~Iak~lk~~~~~L~~~~kd~~D~~l~pG----lvrg 75 (529)
T TIGR00284 1 VKVLVITGKLAKRLVEDVVKNKKDQEVEVKVLNV-SVAALLSTKLIAKELKKLKDKLEKKLKDSVDYVLVPG----LVRG 75 (529)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCC-CCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECC----CHHH
T ss_conf 9789983223457899996034798789998482-0020337779999998788876454314647688477----0010
Q ss_pred HHHHH-HHCCCCEEECCHHHHHH
Q ss_conf 99898-60588067010666555
Q gi|254780206|r 78 ISDAL-NAAGFKVFGPSQRAAKL 99 (424)
Q Consensus 78 i~d~l-~~~gi~v~Gp~~~aa~l 99 (424)
=+... +..|++||=.|.++.-|
T Consensus 76 Dak~veevtG~~~fKgT~ea~di 98 (529)
T TIGR00284 76 DAKVVEEVTGVKVFKGTEEAVDI 98 (529)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 02321002540222476772035
No 293
>PRK06753 hypothetical protein; Provisional
Probab=62.89 E-value=11 Score=17.59 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=18.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 9589988658899999999858996
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLL 25 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~ 25 (424)
|||+|||.|=---++|..|.+...-
T Consensus 1 mkV~IVGaGiaGL~~A~~L~~~G~~ 25 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHT 25 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 9899999458999999999977999
No 294
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=62.77 E-value=7.1 Score=19.07 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=32.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECC--CCCHHHHHHHHHH----HCCCEEE-EC--CCHH
Q ss_conf 899886588999999998589967899954983575117055128--7898999999987----1897999-97--9557
Q gi|254780206|r 3 VLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAID--IQNHSAIIHFCQE----KHIDLVV-VG--PELP 73 (424)
Q Consensus 3 ILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~--~~d~~~i~~~a~~----~~iDlvi-vg--pE~p 73 (424)
.||+||--=.| |.||-.-.-+|.-|- -||+.+.+. ++. ..+.+++.+.+.+ .+|..++ +| |.+-
T Consensus 40 FLVvGsrTCah-----llQsA~GvMIFAePR-f~tAileE~-Dlag~ad~~~El~rvv~~l~rr~~i~~lflvgsCpsEv 112 (425)
T PRK02842 40 FLVVGTRTCAH-----LLQSAAGVMIFAEPR-FGTAILEEG-DLAGLADANEELDRVVEEIKRRPNPSVIFLVGSCPSEV 112 (425)
T ss_pred EEEEECCHHHH-----HHHHCCCCEEECCCC-CCEEECCCC-HHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHH
T ss_conf 99984502787-----874066771315761-111232620-11046777188999999983489982799973587666
Q ss_pred H---HHHHHHHHHHC-CCCEE
Q ss_conf 8---74899898605-88067
Q gi|254780206|r 74 L---VNGISDALNAA-GFKVF 90 (424)
Q Consensus 74 L---~~gi~d~l~~~-gi~v~ 90 (424)
+ ..+.+..|+.. ++||+
T Consensus 113 IKlDL~~~A~rL~~~~~v~Vl 133 (425)
T PRK02842 113 IKLDLEGLAERLSTEFGVPVL 133 (425)
T ss_pred HHHHHHHHHHHHHHHHCCEEE
T ss_conf 340288899986441187079
No 295
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=62.68 E-value=12 Score=17.57 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHCCCCE--EEEEECC
Q ss_conf 557874899898605880670106665552010235788876531011112234401-111121012420--2563046
Q gi|254780206|r 71 ELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPM-KAKQYVQNKSMP--IVVKADG 146 (424)
Q Consensus 71 E~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~-ea~~~~~~~g~P--vVVKp~~ 146 (424)
|.|-...+.+.++..|+.++|-+......|.+....|++++++|+.-|-. .+.+ .+.+...-.++| ++|-++|
T Consensus 41 e~P~l~~l~~~~~~~gv~vigV~~~~~~~e~~~~~~~~~~~~~~i~~pv~---~D~~~~~~~~~~v~~~Pt~~lID~~G 116 (126)
T cd03012 41 TLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA---NDNDYATWRAYGNQYWPALYLIDPTG 116 (126)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE---ECCCHHHHHHCCCCCCCEEEEECCCC
T ss_conf 72999999997065881799984454443025999999999859974289---85817889857998238799998998
No 296
>PRK08328 hypothetical protein; Provisional
Probab=62.61 E-value=12 Score=17.56 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=23.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 5899886588999999998589967899954
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP 32 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p 32 (424)
+|||+|-||--..+++.|..+. +.++.++.
T Consensus 29 ~VlvvG~GGlGs~~~~~La~~G-vG~i~lvD 58 (230)
T PRK08328 29 KVAVVGVGGLGSPVAYYLAAAG-VGTVLLID 58 (230)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 7899887878999999999848-98689874
No 297
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=62.55 E-value=12 Score=17.55 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=43.2
Q ss_pred EEEEEC-------CCHHH---HHHHHHHHHCCCCCEEEEECCCHH-HHH-CCEEEEC-----------------------
Q ss_conf 589988-------65889---999999985899678999549835-751-1705512-----------------------
Q gi|254780206|r 2 RVLLIG-------SGGRE---HALAWKIAQSPLLSELWSIPGNPG-IAQ-HAQCVAI----------------------- 46 (424)
Q Consensus 2 kILviG-------sGgrE---hAl~~~l~~s~~~~~v~~~pgN~g-~~~-~~~~~~i----------------------- 46 (424)
|||++. .||-| +-|+..|.+.+....|++...++. ... .......
T Consensus 1 rIl~vt~~~pP~~~GG~e~~~~~la~~L~~~Gh~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHC
T ss_conf 99999486489997649999999999999779989999557987664213576179704764200354310156776422
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 87898999999987189799997955787489989860588067
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVF 90 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~ 90 (424)
+......+.++.++.++|+|++-.-.++..+....+...++|++
T Consensus 81 ~~~~~~~~~~~~~~~~pDivh~h~~~~~~~~~~~~~~~~~~p~v 124 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIV 124 (359)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEE
T ss_conf 78999999999987499999988831767999999998499899
No 298
>KOG3198 consensus
Probab=62.46 E-value=3 Score=21.77 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHH
Q ss_conf 55787489989860588067010666555201023578887
Q gi|254780206|r 71 ELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCT 111 (424)
Q Consensus 71 E~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~ 111 (424)
|.|++.-|+|.|+..|+.++ +|.+|.+-++|+.
T Consensus 42 eNP~a~eI~Dvl~~lgl~~~--------~E~~K~hPrD~~n 74 (152)
T KOG3198 42 ENPLAKEIADVLRALGLNCL--------LEPNKKHPRDFVN 74 (152)
T ss_pred CCCCHHHHHHHHHHHCCCCC--------CCCCCCCCHHCCC
T ss_conf 28442589999998198530--------2535358202078
No 299
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=62.27 E-value=12 Score=17.52 Aligned_cols=63 Identities=21% Similarity=0.407 Sum_probs=43.4
Q ss_pred EEEEECCCHH--HHHHHHHHHHCCCCCEEEEE----CCCHHHHHCCE--------EEECCCCCHHHHHHHHH----HHCC
Q ss_conf 5899886588--99999999858996789995----49835751170--------55128789899999998----7189
Q gi|254780206|r 2 RVLLIGSGGR--EHALAWKIAQSPLLSELWSI----PGNPGIAQHAQ--------CVAIDIQNHSAIIHFCQ----EKHI 63 (424)
Q Consensus 2 kILviGsGgr--EhAl~~~l~~s~~~~~v~~~----pgN~g~~~~~~--------~~~i~~~d~~~i~~~a~----~~~i 63 (424)
||||-|+-|- =|- +..|.++.. +|.+. .|++-.....+ .+.-|..|.+.|.++-. +++|
T Consensus 1 ~iLVTGGAGYIGSHt-~~~Ll~~G~--ev~vlDNLs~G~~~~l~~~~~~~G~~~~fv~gDL~D~~~l~~~f~kqql~~~i 77 (341)
T TIGR01179 1 KILVTGGAGYIGSHT-VRQLLESGY--EVVVLDNLSNGSAEALKRGEEITGKEVTFVEGDLRDRELLRRVFEKQQLEHKI 77 (341)
T ss_pred CEEEEECCCCCHHHH-HHHHHHCCC--EEEEEECCCCCCHHHHCCCCEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 926861466443588-788763597--28998157888488750023414853205871751579999998774311675
Q ss_pred CEEE
Q ss_conf 7999
Q gi|254780206|r 64 DLVV 67 (424)
Q Consensus 64 Dlvi 67 (424)
|-||
T Consensus 78 dAVi 81 (341)
T TIGR01179 78 DAVI 81 (341)
T ss_pred CEEE
T ss_conf 4675
No 300
>PRK06217 hypothetical protein; Validated
Probab=62.25 E-value=12 Score=17.52 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=22.1
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCC-----CCEEEEECCCHHH
Q ss_conf 958998865889-999999985899-----6789995498357
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPL-----LSELWSIPGNPGI 37 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~-----~~~v~~~pgN~g~ 37 (424)
|||+|+|+.|-- --|+.+|.+.-. .+.+|--|++|.+
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~~~W~p~~~pf 44 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDDFFWLPTDPPF 44 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCEECCCCCCC
T ss_conf 6799978998878999999999759896864555356899975
No 301
>PRK13123 consensus
Probab=62.23 E-value=12 Score=17.51 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=6.7
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 788876531011112
Q gi|254780206|r 107 KKFCTKYGIPTATYQ 121 (424)
Q Consensus 107 K~~l~~~gIPt~~~~ 121 (424)
++.++++||......
T Consensus 135 ~~~~~~~gi~~I~li 149 (256)
T PRK13123 135 APLLRDTDIALIPLV 149 (256)
T ss_pred HHHHHHCCCCEEEEC
T ss_conf 999997699778640
No 302
>PTZ00287 6-phosphofructokinase; Provisional
Probab=62.07 E-value=12 Score=17.49 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=57.4
Q ss_pred CEEEEECCCHHH---HH----HHHHHHHCCCCCEEEEECCCH-HHH----------------------HCC-EEEEC-CC
Q ss_conf 958998865889---99----999998589967899954983-575----------------------117-05512-87
Q gi|254780206|r 1 MRVLLIGSGGRE---HA----LAWKIAQSPLLSELWSIPGNP-GIA----------------------QHA-QCVAI-DI 48 (424)
Q Consensus 1 MkILviGsGgrE---hA----l~~~l~~s~~~~~v~~~pgN~-g~~----------------------~~~-~~~~i-~~ 48 (424)
+||.||=|||.. |- |-.+|++-.--.++|=.-|.| |.. -+. -..-| ..
T Consensus 180 LrVGVvLSGGqAPGGHNVI~GlfD~lK~~Np~S~L~GFlgGp~Gl~~~~y~EiT~e~i~~YRN~GGFDmIgSGR~KIet~ 259 (1439)
T PTZ00287 180 LKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVKNK 259 (1439)
T ss_pred EEEEEEEECCCCCCCCEEEHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEECHHHHHHHHCCCCCCEECCCCCCCCCH
T ss_conf 89999964799998640315268999864987879875678433226865993599998633388853321585323799
Q ss_pred CCHHHHHHHHHHHCCC-EEEECCCHH--HHHHHHHHHHHCC--CCEEECC
Q ss_conf 8989999999871897-999979557--8748998986058--8067010
Q gi|254780206|r 49 QNHSAIIHFCQEKHID-LVVVGPELP--LVNGISDALNAAG--FKVFGPS 93 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iD-lvivgpE~p--L~~gi~d~l~~~g--i~v~Gp~ 93 (424)
.++++.++.|++.+.| |||||-+.. -++=+++.|.+.+ +.|+|-+
T Consensus 260 EQ~~~a~~t~~~L~LdgLVIIGGDdSNTNAA~LAEYf~~~~~~t~VIGvP 309 (1439)
T PTZ00287 260 DDLIAIENIVAKLKLNGLVIIGGDGSNSNAALIAEYFAERNIPISIIGIP 309 (1439)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 99999999999728987999848997488999999999669995798157
No 303
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=61.99 E-value=12 Score=17.48 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=20.9
Q ss_pred HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHC-C--CCEE
Q ss_conf 9999999871897999979557874899898605-8--8067
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPELPLVNGISDALNAA-G--FKVF 90 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~-g--i~v~ 90 (424)
..+.++.+++++|+||.- -|+.. +..+.+. + +|++
T Consensus 94 ~~l~~li~~~kPDvII~T--~P~~~--l~~lk~~~~~~iP~~ 131 (388)
T PRK13609 94 KRLKLLLQAEKPDIVINT--FPIIA--VPELKKQTGISIPVY 131 (388)
T ss_pred HHHHHHHHHCCCCEEEEC--CCHHH--HHHHHHHCCCCCCEE
T ss_conf 999999998295999988--87899--999998459999889
No 304
>PRK05849 hypothetical protein; Provisional
Probab=61.72 E-value=12 Score=17.45 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=80.3
Q ss_pred HHHHHHHHHHCCCCCCC----CCCHHHHHHHH-CC-CCEEEEEEC-----C---CCCCCCCCC--H--HHHHHHHHHHHH
Q ss_conf 78887653101111223----44011111210-12-420256304-----6---534300023--2--356778887887
Q gi|254780206|r 107 KKFCTKYGIPTATYQHF----SDPMKAKQYVQ-NK-SMPIVVKAD-----G---LCAGKGVVV--A--ATVDEATSAIDR 168 (424)
Q Consensus 107 K~~l~~~gIPt~~~~~~----~~~~ea~~~~~-~~-g~PvVVKp~-----~---~agGkGV~i--~--~~~~e~~~~~~~ 168 (424)
+..+++..||---+..+ .+.+...+.+. .+ +-|++|+-+ + +.+|+=-++ + .+.+++.+++.+
T Consensus 19 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~iVRSSa~~ED~~~~S~AG~~~S~lnV~~~~~~~l~~ai~~ 98 (782)
T PRK05849 19 QTALKKAKILPLLLFSVAEWLSNKDKVLQEIQSSFPSDKLIVRSSSRSEDSMSSSNAGAFLSLLNVPADSKDALLKALEK 98 (782)
T ss_pred HHHHHCCCCCCEEEEEHHHHHHCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHH
T ss_conf 87642574797599889998747999999999864899479957873448745666767423248784669999999999
Q ss_pred HHCCC-----CHHHHHHHHHHCCCCCEEEEC-C---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCE
Q ss_conf 51445-----317778877520575234421-5---7763103520001113566544444344300001234-432220
Q gi|254780206|r 169 CFQQI-----NSTVIIEEYLEGFEVSFFALC-D---GKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGM-SQELYS 238 (424)
Q Consensus 169 ~~~~~-----~~~VliEefl~G~E~Sv~~i~-d---G~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~-~~~~~~ 238 (424)
.+.+. ++.|||++++++..+|=-+|+ | |..++.. .|..- +++---|+|-+. +...+ ......
T Consensus 99 v~~sy~~~~~~~~vliQ~m~~~v~~sGV~ft~d~~~~~py~vi----n~~~~--g~t~~VtsG~~~--~~~~~~~~~~~~ 170 (782)
T PRK05849 99 VINSYGEADKDDEILVQPMLEDIVLSGVIMSVDKEDGAPYYVV----NYDES--GSTDSVTGGSGG--SKTTYYHRSDAL 170 (782)
T ss_pred HHHHHCCCCCCCEEEEEHHCCCCCEEEEEEECCCCCCCCEEEE----EECCC--CCCCEEECCCCC--CEEEEEECCCCC
T ss_conf 9998566888976997200157745899960688899974999----95588--987678678787--569999637754
Q ss_pred EEECCHHHHHHHHHHHCCCEEEE-EEEEEEEEECCE-EEEEEEEE
Q ss_conf 10000089999986204623566-445448985570-48999886
Q gi|254780206|r 239 TVIQKIILPTIEGMQKEQNPFQG-VLFAGLMITEQG-PYLIEYNV 281 (424)
Q Consensus 239 ~i~~~i~~~~~~~l~~~~~~y~G-~l~~~~m~t~~g-p~viE~N~ 281 (424)
.....-+++.+.+++..---|.+ .|-+++-++++| ++++-...
T Consensus 171 ~~~~~~~~~li~~~~elE~l~~~~~lDIEfaid~~~~l~llQvRP 215 (782)
T PRK05849 171 VFKPPRLKKLIELIRELEALFGCDFLDIEFAIDEKEELYILQVRP 215 (782)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECC
T ss_conf 578677999999999999981999621699985999589999433
No 305
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=61.38 E-value=12 Score=17.41 Aligned_cols=112 Identities=13% Similarity=0.184 Sum_probs=54.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHCCEEEECCC-----CCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 5899886588999999998589967899954-9835751170551287-----898999999987189799997955787
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP-GNPGIAQHAQCVAIDI-----QNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p-gN~g~~~~~~~~~i~~-----~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
||||+|.||----+++-|..++ +.++.++. +.-....+....-+.. .-.+...+.+++.+++.-|..-...+.
T Consensus 1 KVlvvGaGglG~e~lk~La~~G-vg~i~ivD~D~Ie~SNLnRQfLf~~~diGk~Ka~~a~~~l~~~Np~v~I~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTG-FGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9899888888999999999828-985999719922610146682768221887099999999998888967998616766
Q ss_pred H-HH-HHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 4-89-98986058806701066655520102357888765310111
Q gi|254780206|r 76 N-GI-SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTAT 119 (424)
Q Consensus 76 ~-gi-~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~ 119 (424)
. -. .+.++...+-+-|-.--.|| .+.-+.+..+++|--.
T Consensus 80 ~~~~~~~f~~~~DvVi~alDN~~aR-----~~vN~~C~~~~~PlIe 120 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAAR-----RHVNKMCLAADVPLIE 120 (312)
T ss_pred CCCCCHHHHHHCCEEEECCCCHHHH-----HHHHHHHHHCCCCEEE
T ss_conf 8643498896299999766789999-----9999999983997597
No 306
>pfam04174 DUF407 Domain of unknown function (DUF407).
Probab=61.30 E-value=7 Score=19.15 Aligned_cols=62 Identities=16% Similarity=0.306 Sum_probs=36.5
Q ss_pred HHHH-HHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHH--HHHHHHHHHHHH
Q ss_conf 7888-76531011112234401111121012420256304653430002323--567788878875
Q gi|254780206|r 107 KKFC-TKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAA--TVDEATSAIDRC 169 (424)
Q Consensus 107 K~~l-~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~--~~~e~~~~~~~~ 169 (424)
|.++ ++.-+|.....-+-+.++....++++. -+||||...++|.|+.+-. +.+|..+..+++
T Consensus 3 r~lLgE~l~Lp~v~TwWCG~~~~~~~Vl~nl~-~lVIkp~~~~~g~~~~~g~~ls~~e~~~l~~~I 67 (145)
T pfam04174 3 ERYLGEEPLLPNVPTYWCGEPEELEHVLAHLT-ELVIKPVGGSGGYGMLVGPAASSAELAEFAERI 67 (145)
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHCHH-HCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 68759873689865037998899999985676-558985467788877434108999999999998
No 307
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=61.21 E-value=12 Score=17.39 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=16.9
Q ss_pred EEEEECCC----HHH---HHHHHHHHHCCCCCEEEEE
Q ss_conf 58998865----889---9999999858996789995
Q gi|254780206|r 2 RVLLIGSG----GRE---HALAWKIAQSPLLSELWSI 31 (424)
Q Consensus 2 kILviGsG----grE---hAl~~~l~~s~~~~~v~~~ 31 (424)
+|.||-|| |.. .+|+-+|.+... ++.+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~Gk--Kv~li 37 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGK--KVVLI 37 (272)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCC--EEEEE
T ss_conf 499994488876743106778999997398--59999
No 308
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=60.67 E-value=12 Score=17.33 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=4.6
Q ss_pred HHHHHCCCCCEE
Q ss_conf 999858996789
Q gi|254780206|r 17 WKIAQSPLLSEL 28 (424)
Q Consensus 17 ~~l~~s~~~~~v 28 (424)
..|.+.+.+.++
T Consensus 31 ~~l~~~~~i~e~ 42 (311)
T cd05213 31 RRLLEKPGISEA 42 (311)
T ss_pred HHHHCCCCCCEE
T ss_conf 998637997239
No 309
>KOG2741 consensus
Probab=60.56 E-value=12 Score=17.31 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=48.8
Q ss_pred EEEEECCC--HHHHHHHHHHHHCCCCCEEEE--E-CCCHHHHHCCEEEEC-CCCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 58998865--889999999985899678999--5-498357511705512-87898999999987189799997955787
Q gi|254780206|r 2 RVLLIGSG--GREHALAWKIAQSPLLSELWS--I-PGNPGIAQHAQCVAI-DIQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 2 kILviGsG--grEhAl~~~l~~s~~~~~v~~--~-pgN~g~~~~~~~~~i-~~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
|+.++|-| +|+|+. +|..++......+ + |.---...+++...+ +++-+...-++++.-.+|.|++++-.|+-
T Consensus 8 r~Gi~g~g~ia~~f~~--al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741 8 RWGIVGAGRIARDFVR--ALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred EEEEEEHHHHHHHHHH--HHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCH
T ss_conf 8988604677899999--72147545827999965527889999986599987425579988249876879967998008
Q ss_pred HHHHHHHHHCCCCEEE
Q ss_conf 4899898605880670
Q gi|254780206|r 76 NGISDALNAAGFKVFG 91 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~G 91 (424)
.-++--.-..|-+|+.
T Consensus 86 ~evv~l~l~~~K~VL~ 101 (351)
T KOG2741 86 YEVVMLALNKGKHVLC 101 (351)
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 9999999975995786
No 310
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=60.38 E-value=13 Score=17.29 Aligned_cols=96 Identities=8% Similarity=0.145 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHCCCEEEECCC---HHH---HHHHHHHHHHCC----CCEE---ECCHHHHHHHHCCHHHHHHHHHHHHH-
Q ss_conf 899999998718979999795---578---748998986058----8067---01066655520102357888765310-
Q gi|254780206|r 51 HSAIIHFCQEKHIDLVVVGPE---LPL---VNGISDALNAAG----FKVF---GPSQRAAKLESSKSFAKKFCTKYGIP- 116 (424)
Q Consensus 51 ~~~i~~~a~~~~iDlvivgpE---~pL---~~gi~d~l~~~g----i~v~---Gp~~~aa~le~sK~~~K~~l~~~gIP- 116 (424)
.++|.+..+..+++++++-.. +-+ ..+++..+++.. +|++ .|+-..++..+-....+.+++..--+
T Consensus 73 ~~aI~~~~~~~~P~~i~V~sTC~~e~IGDDi~~v~k~~~~~~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~ali~~~~~~~ 152 (429)
T cd03466 73 KKGLKNVIEQYNPEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAVRSIVKNIAVDP 152 (429)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999841998899965743865236399999999873478888379863898768678999999999999847798
Q ss_pred CC--------CCCCCCCCHHHHHHHHCCCCEEEEEECC
Q ss_conf 11--------1122344011111210124202563046
Q gi|254780206|r 117 TA--------TYQHFSDPMKAKQYVQNKSMPIVVKADG 146 (424)
Q Consensus 117 t~--------~~~~~~~~~ea~~~~~~~g~PvVVKp~~ 146 (424)
.+ .|..-.|..++++.++.+|..+++=||-
T Consensus 153 ~~~~~vNli~~~~~~gD~~eik~ll~~~Gl~~~vlpd~ 190 (429)
T cd03466 153 DKIEKINVIAGMMSPADIREIKEILREFGIEYILLPDT 190 (429)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 87885678179897666999999999829957971464
No 311
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=60.31 E-value=8.1 Score=18.67 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=19.8
Q ss_pred CCEEEEEEE--EEEEE-ECCE-EEEEEEE-EEECC
Q ss_conf 623566445--44898-5570-4899988-65147
Q gi|254780206|r 256 QNPFQGVLF--AGLMI-TEQG-PYLIEYN-VRFGD 285 (424)
Q Consensus 256 ~~~y~G~l~--~~~m~-t~~g-p~viE~N-~R~GD 285 (424)
.++-.|++= -++++ |+.| |-||+=| |+-|.
T Consensus 203 ~i~LiGviPeD~~iI~stN~GEP~vl~~~L~~~g~ 237 (272)
T TIGR01968 203 SIPLIGVIPEDEEIIVSTNKGEPVVLNKKLSRAGK 237 (272)
T ss_pred CCCCEEEECCCCCEEEEECCCEEEEECCCCCHHHH
T ss_conf 88616863299865766456143544600261678
No 312
>PRK06101 short chain dehydrogenase; Provisional
Probab=60.22 E-value=13 Score=17.27 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=39.4
Q ss_pred CE-EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHH-H------CCEEEECCCCCHHHHHHHHHHHC--CCEEE
Q ss_conf 95-8998865-88999999998589967899954983575-1------17055128789899999998718--97999
Q gi|254780206|r 1 MR-VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIA-Q------HAQCVAIDIQNHSAIIHFCQEKH--IDLVV 67 (424)
Q Consensus 1 Mk-ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~-~------~~~~~~i~~~d~~~i~~~a~~~~--iDlvi 67 (424)
|| |||.|+. |--.|+|..|.+... +|+++--|.... . ....+..|..|.+++.+...+.. +|..+
T Consensus 1 MktvlITGassGIG~a~A~~la~~G~--~Vi~~~R~~~~l~~~~~~~~~~~~~~~Dvtd~~~~~~~~~~~~~~~d~~i 76 (241)
T PRK06101 1 MTSVLITGATSGIGKQLALDYAKAGW--KVIACGRNEAVLDELHDQSSNIFTLAFDVTDYEETKAALSQLPFIPELWI 76 (241)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 99899922404999999999998799--89999899999999997328804898522679999999997187777899
No 313
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=59.70 E-value=13 Score=17.21 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 958998865889999999985899
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPL 24 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~ 24 (424)
|||+|+|.|+----++..|++...
T Consensus 3 MkI~IiGaGAiG~~~a~~L~~ag~ 26 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL 26 (305)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 889998823999999999984899
No 314
>PRK13190 putative peroxiredoxin; Provisional
Probab=59.63 E-value=9.1 Score=18.31 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=39.2
Q ss_pred CEEEECCCHH-HHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 7999979557-874899898605880670106665552010235788876531011112234401
Q gi|254780206|r 64 DLVVVGPELP-LVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPM 127 (424)
Q Consensus 64 DlvivgpE~p-L~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ 127 (424)
|++.+.|.+- -.+...+.|++.|..++|-|.++. ++.+.|.+++-++.|+. ..|-.+.|..
T Consensus 38 DfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~--~sH~aW~~~~~~~~G~~-v~fPliaD~~ 99 (202)
T PRK13190 38 DFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI--YSHIAWLRDIEERFGIK-IPFPVIADID 99 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHHCHHHHCCCC-CCCCCCCCCC
T ss_conf 88986717999999989999976988999967539--99999856879856933-1223433895
No 315
>PRK13131 consensus
Probab=59.55 E-value=12 Score=17.36 Aligned_cols=13 Identities=23% Similarity=0.018 Sum_probs=5.2
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 8887653101111
Q gi|254780206|r 108 KFCTKYGIPTATY 120 (424)
Q Consensus 108 ~~l~~~gIPt~~~ 120 (424)
+.++++|+.....
T Consensus 134 ~~~~~~~l~~I~l 146 (257)
T PRK13131 134 KSAQKHQIKQIFI 146 (257)
T ss_pred HHHHHCCCCEEEE
T ss_conf 9999779847997
No 316
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=59.29 E-value=13 Score=17.26 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHCCCCEEECCHHH--HHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE--EEEEECCCC
Q ss_conf 787489989860588067010666--5552010235788876531011112234401111121012420--256304653
Q gi|254780206|r 73 PLVNGISDALNAAGFKVFGPSQRA--AKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP--IVVKADGLC 148 (424)
Q Consensus 73 pL~~gi~d~l~~~gi~v~Gp~~~a--a~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P--vVVKp~~~a 148 (424)
|-...+...+.+.|+.++|-+... ...+.+...+++++++++++-|- .++...++.+...-...| +||-|+|--
T Consensus 45 p~l~~l~~~~~~~gv~~lgVn~~~~~~~~~ds~~~~~~~~~~~~~~fPv--L~D~~g~va~~yg~~~tP~~fvID~~G~i 122 (171)
T cd02969 45 DRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPY--LLDETQEVAKAYGAACTPDFFLFDPDGKL 122 (171)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEE--EEECCCHHHHHCCCCCCCEEEEECCCCEE
T ss_conf 7655677676347828999966874437556999999999870237179--99589749997499648807998899989
Q ss_pred CCCC
Q ss_conf 4300
Q gi|254780206|r 149 AGKG 152 (424)
Q Consensus 149 gGkG 152 (424)
-.+|
T Consensus 123 ~YrG 126 (171)
T cd02969 123 VYRG 126 (171)
T ss_pred EEEC
T ss_conf 9868
No 317
>PRK10116 universal stress protein UspC; Provisional
Probab=58.93 E-value=9.4 Score=18.20 Aligned_cols=85 Identities=9% Similarity=0.141 Sum_probs=45.0
Q ss_pred HHHHHHHHHHCCCE--EEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC-C-CCH
Q ss_conf 99999998718979--9997955787489989860588067010666555201023578887653101111223-4-401
Q gi|254780206|r 52 SAIIHFCQEKHIDL--VVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHF-S-DPM 127 (424)
Q Consensus 52 ~~i~~~a~~~~iDl--vivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~-~-~~~ 127 (424)
+.-..+|+..+-.+ +.+..+..+..++ ..|.+.. -+....|..|.+.+++..+.++|.-..... - -.+
T Consensus 21 ~kA~~lA~~~~AklslihV~~~~~~y~~~-------~~~~~~d-~~~~~~e~a~~~L~~l~~~~~~pi~~~~v~~G~~~~ 92 (142)
T PRK10116 21 AKAVSIARPVNGKISLITLASDPEMYNQF-------AAPMLED-LRSVMQEETQSFLDELIQKADYPIEKTFIAYGELSE 92 (142)
T ss_pred HHHHHHHHHCCCEEEEEEEECCHHHHHHC-------CCHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHH
T ss_conf 99999999819989999993576665210-------2213788-999999999999999998749981589999658899
Q ss_pred HHHHHHHCCCCEEEEEE
Q ss_conf 11112101242025630
Q gi|254780206|r 128 KAKQYVQNKSMPIVVKA 144 (424)
Q Consensus 128 ea~~~~~~~g~PvVVKp 144 (424)
+..+++++.+.-++|=-
T Consensus 93 ~I~~~a~e~~~DLIV~G 109 (142)
T PRK10116 93 HILEVCRKHHFDLVICG 109 (142)
T ss_pred HHHHHHHHHCCCEEEEE
T ss_conf 99999999699999990
No 318
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=58.73 E-value=13 Score=17.10 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=51.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHCCEEEECCC-----CCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 5899886588999999998589967899954-9835751170551287-----898999999987189799997955787
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP-GNPGIAQHAQCVAIDI-----QNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p-gN~g~~~~~~~~~i~~-----~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
+|||+|-||=--..+.-|..+. +-++-++. +.-....+...+..+. ...+...+..++.+++.-|..-...|.
T Consensus 44 ~VlvvG~GGLG~~~~~yLaaaG-vG~i~ivD~D~v~~sNL~RQil~~~~dvG~~K~~~a~~~l~~~Np~v~v~~~~~~l~ 122 (392)
T PRK07878 44 RVLVIGAGGLGSPTLLYLAAAG-VGTIGIVEFDVVDESNLQRQIIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLE 122 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCCC
T ss_conf 7899878757899999999828-975999878996745577200568433587079999999998789853121131378
Q ss_pred H-HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 4-8998986058806701066655520102357888765310111
Q gi|254780206|r 76 N-GISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTAT 119 (424)
Q Consensus 76 ~-gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~ 119 (424)
. -..+.++...+-+=|..-.. .|...-+.+.++++|-..
T Consensus 123 ~~n~~~li~~~DvViD~tDN~~-----tR~lindac~~~~~PlV~ 162 (392)
T PRK07878 123 PSNAVDLFAQYDLILDGTDNFA-----TRYLVNDAAVLAGKPYVW 162 (392)
T ss_pred HHHHHHHHCCCCEEEECCCCHH-----HHHHHHHHHHHHCCCEEE
T ss_conf 8898764317768986689989-----999999999996998799
No 319
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=58.60 E-value=13 Score=17.08 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHCCCEEEECCC----------HH-HHHHHHHHHHHCCCCEEE
Q ss_conf 89899999998718979999795----------57-874899898605880670
Q gi|254780206|r 49 QNHSAIIHFCQEKHIDLVVVGPE----------LP-LVNGISDALNAAGFKVFG 91 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iDlvivgpE----------~p-L~~gi~d~l~~~gi~v~G 91 (424)
..++.+++.|+++++|+|+++-+ +- +.....-.|...|||+|.
T Consensus 27 ~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 27 KAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999999997069999981555788999989999999999987546982899
No 320
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=58.56 E-value=13 Score=17.08 Aligned_cols=116 Identities=14% Similarity=0.216 Sum_probs=58.0
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHH
Q ss_conf 958998865889-9999999858996789995498357511705512878989999999871897999979557874899
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGIS 79 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~ 79 (424)
|||||+=.---- ..|+..|++... +|..+ .|.++.++++.++.+|+++..-.-|=..
T Consensus 1 mkILivEdd~~~~~~l~~~L~~~g~--~V~~a-----------------~~~~~al~~~~~~~~dlvilD~~lp~~~--- 58 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGH--QVDAA-----------------EDAKEADYYLNEHLPDIAIVDLGLPDED--- 58 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCC--EEEEE-----------------CCHHHHHHHHHHCCCCEEEEECCCCCCC---
T ss_conf 9899995989999999999997899--99998-----------------9999999999757998999979998988---
Q ss_pred HHHHHCCCCEEECCHHHHHHHHCCHHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHH
Q ss_conf 89860588067010666555201023578887-65310111122344011111210124202563046534300023235
Q gi|254780206|r 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCT-KYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAAT 158 (424)
Q Consensus 80 d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~-~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~ 158 (424)
|+. +++++=. ...+|.---....+.++..+.++.----+++||- +
T Consensus 59 ------G~~----------------l~~~ir~~~~~~piI~lta~~~~~~~~~al~~Gaddyl~KP~------------~ 104 (223)
T PRK10816 59 ------GLS----------------LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPF------------H 104 (223)
T ss_pred ------CCC----------------CCCCHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCC------------C
T ss_conf ------640----------------012011048987689994445677899999869988641897------------7
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 67788878875144
Q gi|254780206|r 159 VDEATSAIDRCFQQ 172 (424)
Q Consensus 159 ~~e~~~~~~~~~~~ 172 (424)
.+|+...+......
T Consensus 105 ~~eL~arv~~~lrr 118 (223)
T PRK10816 105 IEEVMARMQALMRR 118 (223)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 78999999999665
No 321
>PRK06988 putative formyltransferase; Provisional
Probab=58.52 E-value=13 Score=17.07 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=24.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-CCEEEEECCCHH
Q ss_conf 58998865889999999985899-678999549835
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPL-LSELWSIPGNPG 36 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~-~~~v~~~pgN~g 36 (424)
||...|+.........+|.++.. +.-|+.-|++|.
T Consensus 4 rivf~Gtp~fav~~L~~L~~~~~~v~~VvTqpD~p~ 39 (313)
T PRK06988 4 RAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPT 39 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 199979988999999999978996799989989976
No 322
>PRK10717 cysteine synthase A; Provisional
Probab=58.09 E-value=14 Score=17.02 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=8.9
Q ss_pred CCCEEEEEECCCCCCCCCCC
Q ss_conf 44206754225446687757
Q gi|254780206|r 320 AEYALTVVVATKGYPEEYPH 339 (424)
Q Consensus 320 ~~~~v~Vvlas~GYP~~~~k 339 (424)
++..+.+|++..|. +|..
T Consensus 296 ~g~~VV~Il~D~G~--rYls 313 (334)
T PRK10717 296 PGHTIVTILCDSGE--RYQS 313 (334)
T ss_pred CCCEEEEEECCCCC--CCCC
T ss_conf 86979999798974--3453
No 323
>PRK07832 short chain dehydrogenase; Provisional
Probab=58.04 E-value=14 Score=17.02 Aligned_cols=78 Identities=28% Similarity=0.492 Sum_probs=46.4
Q ss_pred EEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCH-HHH----HC-------CEEEECCCCCHHHHHHHHHHH-----CC
Q ss_conf 58998865-88999999998589967899954983-575----11-------705512878989999999871-----89
Q gi|254780206|r 2 RVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNP-GIA----QH-------AQCVAIDIQNHSAIIHFCQEK-----HI 63 (424)
Q Consensus 2 kILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~-g~~----~~-------~~~~~i~~~d~~~i~~~a~~~-----~i 63 (424)
++||-|.+ |---|+|..|.+... +|++..-|. ... ++ ...+..|..|.+++.+++++. .+
T Consensus 2 ~alITGassGIG~a~A~~la~~Ga--~v~l~~r~~~~l~~~~~~l~~~g~~~~~~~~~Dvsd~~~v~~~~~~~~~~~g~i 79 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHPSM 79 (272)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 799947201999999999998899--899998988999999999984589714788566899999999999999972998
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEECCHHH
Q ss_conf 799997955787489989860588067010666
Q gi|254780206|r 64 DLVVVGPELPLVNGISDALNAAGFKVFGPSQRA 96 (424)
Q Consensus 64 DlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~a 96 (424)
|..| +.+|+..+||-.+.
T Consensus 80 DiLi---------------NNAGi~~~g~~~~~ 97 (272)
T PRK07832 80 DVVM---------------NIAGISAWGTVDRL 97 (272)
T ss_pred CEEE---------------ECCCCCCCCCCCCC
T ss_conf 8899---------------87876888873458
No 324
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=57.62 E-value=14 Score=16.97 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=12.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCC
Q ss_conf 5899886588999999998589
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSP 23 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~ 23 (424)
+|||||-||=--..+.-|..+.
T Consensus 43 ~VlvvG~GGLG~p~~~yLaaaG 64 (370)
T PRK05600 43 RVLVIGAGGLGCPAMQSLASAG 64 (370)
T ss_pred CEEEECCCHHHHHHHHHHHHCC
T ss_conf 7899888757899999999828
No 325
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=57.33 E-value=14 Score=16.94 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=48.3
Q ss_pred CEEEEECCCHHH---HH----HHHHHHHCCCCCEEEEEC-CCHHHHH----------------------C-CEEEECC-C
Q ss_conf 958998865889---99----999998589967899954-9835751----------------------1-7055128-7
Q gi|254780206|r 1 MRVLLIGSGGRE---HA----LAWKIAQSPLLSELWSIP-GNPGIAQ----------------------H-AQCVAID-I 48 (424)
Q Consensus 1 MkILviGsGgrE---hA----l~~~l~~s~~~~~v~~~p-gN~g~~~----------------------~-~~~~~i~-~ 48 (424)
+||.|+=|||-. || +...+... ..+||-.. |--|... . +.+..+. .
T Consensus 3 kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssr~~~~~~~ 80 (347)
T COG0205 3 KKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKTE 80 (347)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCHHHHCCCCCEECCHHHHHHHHHCCCEEEEECCCCCCCCH
T ss_conf 36999846889830769999999999976--9789999433234207861214420146798659868754788876567
Q ss_pred CCHHHHHHHHHHHCCC-EEEECCCHHHHHHHHHHHHHCC-CCEEECCH
Q ss_conf 8989999999871897-9999795578748998986058-80670106
Q gi|254780206|r 49 QNHSAIIHFCQEKHID-LVVVGPELPLVNGISDALNAAG-FKVFGPSQ 94 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iD-lvivgpE~pL~~gi~d~l~~~g-i~v~Gp~~ 94 (424)
...+..++-.++++|| |+++|-+..+.. +..|.+++ ++|+|-++
T Consensus 81 e~~~~~~~~l~~~gId~LvvIGGDGS~~g--A~~Lae~~~i~vVGvPk 126 (347)
T COG0205 81 EGRKVAAENLKKLGIDALVVIGGDGSYTG--AALLAEEGGIPVVGVPK 126 (347)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHH--HHHHHHHCCCCEEECCC
T ss_conf 79999999999839988999788873899--99999735986896688
No 326
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.32 E-value=14 Score=16.94 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999987189799997955787489989860588067
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVF 90 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~ 90 (424)
...++....+++|.+|+-|-.-......+.+.+.|+|++
T Consensus 45 ~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~l~~~~iPvV 83 (268)
T cd06289 45 EQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVV 83 (268)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf 999999996599989994688899999999997599899
No 327
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689 This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=57.20 E-value=6.1 Score=19.57 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=70.6
Q ss_pred HHHHHHHCCCEEEECCC-HHH-HHHHHHHHHHC-C---CCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 99998718979999795-578-74899898605-8---806701066655520102357888765310111122344011
Q gi|254780206|r 55 IHFCQEKHIDLVVVGPE-LPL-VNGISDALNAA-G---FKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMK 128 (424)
Q Consensus 55 ~~~a~~~~iDlvivgpE-~pL-~~gi~d~l~~~-g---i~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~e 128 (424)
.++|---..|+..+--| +|- +.-|...|+.. . -||+=| + .+|=..-|+| -.-|.-|-=-=.+.|.|+
T Consensus 26 aEi~A~AGfDWLL~DgEHAPnDv~~~l~QLQa~A~y~~~PvVRP----~--~~~~~lIK~l-LDIGAQTLLvPmi~~aeq 98 (249)
T TIGR02311 26 AEIVAGAGFDWLLIDGEHAPNDVRTLLSQLQALASYPSSPVVRP----A--IGDPVLIKQL-LDIGAQTLLVPMIETAEQ 98 (249)
T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEC----C--CCCCEEEEHH-HHHHHHHHHHHHHCCHHH
T ss_conf 46533147631101476581468999987102256799973436----7--7882021013-223456643103037789
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH--HH--HHHHHHCCCCCEEEECCCCCCCCCCC
Q ss_conf 111210124202563046534300023235677888788751445317--77--88775205752344215776310352
Q gi|254780206|r 129 AKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINST--VI--IEEYLEGFEVSFFALCDGKTAIPFTT 204 (424)
Q Consensus 129 a~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~--Vl--iEefl~G~E~Sv~~i~dG~~~~~l~~ 204 (424)
|++.++..-|| |.| =|||--+=.+.-...-+-.....++++ || ||-.--=..+.-.+-++|=.=++++|
T Consensus 99 A~~~V~A~rYP----P~G---iRGVGSALARASrwNrIp~Ylq~AdeeiClLlQVEtr~al~NL~~Ia~VeGVDGVFiGP 171 (249)
T TIGR02311 99 AEAAVKATRYP----PKG---IRGVGSALARASRWNRIPDYLQQADEEICLLLQVETREALENLEEIAAVEGVDGVFIGP 171 (249)
T ss_pred HHHHHHHHCCC----CCC---CCCCHHHHHHHHHCCCHHHHHCCHHHHEEHHHHHHHHHHHHHHHHHHCCCCCCCEEECC
T ss_conf 99999850695----195---13400787763221761257605213202323265799886215775017866247571
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 00011135665444443443000
Q gi|254780206|r 205 ARDHKRIHDGDIGPNTGGMGACS 227 (424)
Q Consensus 205 ~~dyKr~~~~d~GpnTGGMGa~~ 227 (424)
+ |. .+-||..-
T Consensus 172 A---------DL---aasmGH~G 182 (249)
T TIGR02311 172 A---------DL---AASMGHLG 182 (249)
T ss_pred H---------HH---HHHCCCCC
T ss_conf 2---------44---34015688
No 328
>PRK07411 hypothetical protein; Validated
Probab=56.51 E-value=14 Score=16.85 Aligned_cols=66 Identities=17% Similarity=0.055 Sum_probs=36.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEE-CCCHHHHHCCEEEECC-----CCCHHHHHHHHHHHCCCEEEE
Q ss_conf 589988658899999999858996789995-4983575117055128-----789899999998718979999
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSI-PGNPGIAQHAQCVAID-----IQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~-pgN~g~~~~~~~~~i~-----~~d~~~i~~~a~~~~iDlviv 68 (424)
+|||+|-||=--.++.-|..+. +-++-++ ++.-....+...+... ....+...+..++.+++.-|.
T Consensus 40 ~VlvvG~GGLG~p~~~yLaaaG-vG~i~ivD~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~~i~ 111 (390)
T PRK07411 40 SVLCIGTGGLGSPLLLYLAAAG-IGRIGIVDFDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVD 111 (390)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 7899888723799999999838-97599974899462347854366620079718999999999868986421
No 329
>TIGR00504 pyro_pdase pyrrolidone-carboxylate peptidase; InterPro: IPR000816 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins , . PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis . The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies , .; GO: 0004219 pyroglutamyl-peptidase I activity, 0006508 proteolysis.
Probab=56.47 E-value=14 Score=16.96 Aligned_cols=88 Identities=24% Similarity=0.299 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHCCCEEEE-C---------CCHHHHHHHHHHHHHCCCCEE-------------ECCHHHHHHHHCCHH
Q ss_conf 89899999998718979999-7---------955787489989860588067-------------010666555201023
Q gi|254780206|r 49 QNHSAIIHFCQEKHIDLVVV-G---------PELPLVNGISDALNAAGFKVF-------------GPSQRAAKLESSKSF 105 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iDlviv-g---------pE~pL~~gi~d~l~~~gi~v~-------------Gp~~~aa~le~sK~~ 105 (424)
+-.+.+.+...++++|+||. | +|- ++.-+.|+ +..|||=. ||-+..+.|=..+ .
T Consensus 47 ~A~~~l~~~i~~~~P~~vI~~G~~PGR~~IsvER-vA~N~~DA-RryGipDn~G~qp~De~~~~~GPaAYfat~Pvr~-m 123 (220)
T TIGR00504 47 EALEALRQAIDEVEPDIVIALGLAPGRSQISVER-VAINLNDA-RRYGIPDNEGEQPIDEPIVPDGPAAYFATLPVRA-M 123 (220)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHH-HHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHH-H
T ss_conf 9999999999850954488515767987650888-87735762-0357887888868887568888720543270899-9
Q ss_pred HHHHHHHHHHHCCCCCCCC----CCH--HHHHHHHCCCCEE
Q ss_conf 5788876531011112234----401--1111210124202
Q gi|254780206|r 106 AKKFCTKYGIPTATYQHFS----DPM--KAKQYVQNKSMPI 140 (424)
Q Consensus 106 ~K~~l~~~gIPt~~~~~~~----~~~--ea~~~~~~~g~Pv 140 (424)
. +-|+|+|||-.-+.++- |+- -.+..+.+.|+|+
T Consensus 124 v-~~mk~~GipA~vS~tAGTFvCN~~~Yl~lh~~A~~G~p~ 163 (220)
T TIGR00504 124 V-KAMKKAGIPAAVSYTAGTFVCNYLMYLLLHHLAQKGLPV 163 (220)
T ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9-999866997212235347899999999999874058971
No 330
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.10 E-value=15 Score=16.80 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=6.1
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999998718979999
Q gi|254780206|r 54 IIHFCQEKHIDLVVV 68 (424)
Q Consensus 54 i~~~a~~~~iDlviv 68 (424)
+++...+.++|.+|+
T Consensus 50 ~~~~l~~~~vdGiI~ 64 (268)
T cd06277 50 LPSFLEDGKVDGIIL 64 (268)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999999489878999
No 331
>PRK09982 universal stress protein UspD; Provisional
Probab=55.98 E-value=11 Score=17.61 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=24.6
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCCCC-C-CHHHHHHHHCCCCEEEEE
Q ss_conf 2010235788876531011112234-4-011111210124202563
Q gi|254780206|r 100 ESSKSFAKKFCTKYGIPTATYQHFS-D-PMKAKQYVQNKSMPIVVK 143 (424)
Q Consensus 100 e~sK~~~K~~l~~~gIPt~~~~~~~-~-~~ea~~~~~~~g~PvVVK 143 (424)
|.++.++++|..+.+-|.....+.+ + .+++..++++.+.-+||=
T Consensus 64 e~~~~~L~~L~~~~~YPI~~~~v~~Gdl~~~L~~~v~~~~iDLlIc 109 (142)
T PRK09982 64 NKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVC 109 (142)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999984799824789984488999999999849988996
No 332
>PRK06953 short chain dehydrogenase; Provisional
Probab=55.92 E-value=15 Score=16.78 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=41.3
Q ss_pred CEE-EEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHH-HH----CCEEEECCCCCHHHHHHHHHHH---CCCEEE
Q ss_conf 958-998865-8899999999858996789995498357-51----1705512878989999999871---897999
Q gi|254780206|r 1 MRV-LLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGI-AQ----HAQCVAIDIQNHSAIIHFCQEK---HIDLVV 67 (424)
Q Consensus 1 MkI-LviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~-~~----~~~~~~i~~~d~~~i~~~a~~~---~iDlvi 67 (424)
||+ ||.|+. |--.|+++.|.+... +|+..--|+.. .. ..+.+..|..|.+++..++.+. .+|..|
T Consensus 1 MK~~LVTGas~GIG~a~a~~la~~G~--~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ldili 75 (222)
T PRK06953 1 MKTVLIVGASRGIGLEFVRQYRADGW--RVIATARDAAGLAALRALGAEALALDVADPESIAGLGWKLDGEALDAAV 75 (222)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999947572999999999998889--9999968888899988421517774058999999999862367767899
No 333
>COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]
Probab=55.51 E-value=12 Score=17.36 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 34401111121012420256304653430002323567788878
Q gi|254780206|r 123 FSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAI 166 (424)
Q Consensus 123 ~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~ 166 (424)
-....+++.++..-+--+++=|.+..-|||.+|+.+.+.+..+.
T Consensus 17 ~~~k~eLlR~v~~~eg~v~~d~~~k~~GRGaYv~~~~~~~~~a~ 60 (95)
T COG2740 17 RGPKKELLRFVAVKEGEVVIDPTGKLPGRGAYVCPDRECIEKAK 60 (95)
T ss_pred CCCHHHEEEEEECCCCEEEECCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 06865838999648980787655677896389837789999999
No 334
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=55.13 E-value=15 Score=16.69 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=20.1
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEE
Q ss_conf 958998865889-9999999858996789
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSEL 28 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v 28 (424)
|||+|.|..||- .+++..+.+++...-+
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~~~~~lv 29 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEAPDFELV 29 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 98999889887899999999858996899
No 335
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110 This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=55.00 E-value=15 Score=16.68 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=21.2
Q ss_pred CHHHHHC---CEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 8357511---7055128789899999998718979999795578
Q gi|254780206|r 34 NPGIAQH---AQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPL 74 (424)
Q Consensus 34 N~g~~~~---~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL 74 (424)
|.|..-+ .+...+...|.+++.+....-..+++=+.-.-||
T Consensus 25 n~gyeiLgLp~k~~~f~~~sa~elke~l~~~~~~fgGasVTiPl 68 (291)
T TIGR01809 25 NAGYEILGLPDKYDKFETESAEELKEVLSDFGKEFGGASVTIPL 68 (291)
T ss_pred HHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCH
T ss_conf 89999834840454443204786479870578652117886303
No 336
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=54.76 E-value=15 Score=16.65 Aligned_cols=15 Identities=7% Similarity=0.020 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHHCCC
Q ss_conf 989999999871897
Q gi|254780206|r 50 NHSAIIHFCQEKHID 64 (424)
Q Consensus 50 d~~~i~~~a~~~~iD 64 (424)
+++..++..+...+.
T Consensus 48 ~l~~~~~~l~~~~~~ 62 (288)
T PRK12749 48 SFPGAIEGLKALKMR 62 (288)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 899999998757998
No 337
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=54.75 E-value=10 Score=17.86 Aligned_cols=61 Identities=26% Similarity=0.232 Sum_probs=31.9
Q ss_pred CEEEECCCHHH-HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 79999795578-7489989860588067010666555201023578887653101111223440
Q gi|254780206|r 64 DLVVVGPELPL-VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDP 126 (424)
Q Consensus 64 DlvivgpE~pL-~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~ 126 (424)
|++.+.|.+-. .+...+.|++.|..++|-|.++. ++.+.|.+.--++.|+-..+|-.++|.
T Consensus 44 dFT~VCttEl~~~~~~~~eF~~~~~~v~giS~Ds~--~sH~aW~~~~~~~~gi~~i~fPllaD~ 105 (194)
T PTZ00137 44 DFTFVCPSELLGFSKRLDEFEERNVKVLGCSVDSK--FSHLAWKKTDLRKGGVGNLKHPLFSDI 105 (194)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHHCHHHHCCCCCCCCCEEECC
T ss_conf 78875508999999999999975988999967838--889999623486588677334456367
No 338
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=54.67 E-value=15 Score=16.64 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=31.8
Q ss_pred CEEEEECCCH-HHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 9589988658-899999999858996789995498357511705512878989999999871897999979
Q gi|254780206|r 1 MRVLLIGSGG-REHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGP 70 (424)
Q Consensus 1 MkILviGsGg-rEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgp 70 (424)
||||+|-.-- --..|+..|.+... .|+.+ .+.++..++++++.+|++++..
T Consensus 1 mkILlVEDd~~~~~~l~~~L~~~g~--~V~~a-----------------~~~~ea~~~~~~~~~DlvilDi 52 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILAAQTEGY--ACDGV-----------------STAREAEQSLESGHYSLVVLDL 52 (222)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCC--EEEEE-----------------CCHHHHHHHHHHCCCCEEEEEC
T ss_conf 9799992889999999999997899--99998-----------------9999999999748998999968
No 339
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=54.55 E-value=13 Score=17.14 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHCCCEEE
Q ss_conf 89999999871897999
Q gi|254780206|r 51 HSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 51 ~~~i~~~a~~~~iDlvi 67 (424)
+.+.+++|+++++.++|
T Consensus 75 F~eF~~~~~~~~ip~~I 91 (214)
T TIGR03333 75 FREFVAFINEHGIPFYV 91 (214)
T ss_pred HHHHHHHHHHCCCCEEE
T ss_conf 99999999985997899
No 340
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=54.33 E-value=16 Score=16.60 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=25.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9589988658899999999858996789995
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSI 31 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~ 31 (424)
|||.|||+|+--.|||..|.+......+|.-
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r 32 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGR 32 (329)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 6189981783799999999966984699962
No 341
>PRK05805 phosphate butyryltransferase; Validated
Probab=54.23 E-value=16 Score=16.59 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHCCC-EEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 78989999999871897-99997955787489989860588067010666555201023578887653101111223440
Q gi|254780206|r 48 IQNHSAIIHFCQEKHID-LVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDP 126 (424)
Q Consensus 48 ~~d~~~i~~~a~~~~iD-lvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~ 126 (424)
+.+++.+++-+++.++. .+++..|+|-+..=+..+.+.|+-. |- |-+++..-++.+++.|+....+..++..
T Consensus 2 i~~~~~i~~~ak~~~pkrIv~~eg~d~rvl~AA~~~~~~gia~--pI-----LiG~~~~I~~~~~~~gl~l~~~eiid~~ 74 (301)
T PRK05805 2 IKNFDEILSKAKEQGPKTISVAVAQDEPVLEAVKEAKELGIAN--AI-----LVGDEEKIKEIAKEIGMDLEDFEIIDEK 74 (301)
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEE--EE-----EECCHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf 3549999999862798969990899979999999999879979--99-----9859999999999879996667773564
Q ss_pred HH
Q ss_conf 11
Q gi|254780206|r 127 MK 128 (424)
Q Consensus 127 ~e 128 (424)
++
T Consensus 75 ~~ 76 (301)
T PRK05805 75 DN 76 (301)
T ss_pred CH
T ss_conf 62
No 342
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=54.17 E-value=16 Score=16.59 Aligned_cols=91 Identities=10% Similarity=0.062 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCEEEECCC--HHH----HHHHHHHHHHC-CCCEEE---CCHHHHHHHHCCHHHHHHHHHHH----HHC
Q ss_conf 99999998718979999795--578----74899898605-880670---10666555201023578887653----101
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPE--LPL----VNGISDALNAA-GFKVFG---PSQRAAKLESSKSFAKKFCTKYG----IPT 117 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE--~pL----~~gi~d~l~~~-gi~v~G---p~~~aa~le~sK~~~K~~l~~~g----IPt 117 (424)
+.|.+..++.+++++++-+. .-+ ..+++..++.. |+|++- |.-.....++-....+.+++..- -+.
T Consensus 64 ~~i~~~~~~~~p~~I~v~~tc~~eiIGdDi~~v~~~~~~~~~~~vi~v~~~gf~g~~~~G~~~a~~al~~~~~~~~~~~~ 143 (398)
T pfam00148 64 EAIREADKRYKPKAIFVYTTCVSELIGDDIEAVAREAEEELGIPVIPVNTPGFGGSHSTGYDAALEALVEQLIGKPTGKK 143 (398)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999997359978999756718872878899999988874993799867986666889999999999998343678889
Q ss_pred C--------C-CCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf 1--------1-12234401111121012420256
Q gi|254780206|r 118 A--------T-YQHFSDPMKAKQYVQNKSMPIVV 142 (424)
Q Consensus 118 ~--------~-~~~~~~~~ea~~~~~~~g~PvVV 142 (424)
. . +..+.|..+.++.++.+|..+..
T Consensus 144 ~~~~VNlig~~~~~~~d~~ei~~ll~~~Gi~v~~ 177 (398)
T pfam00148 144 EPGTVNIIGGFNLGPGDLREIKRLLEKLGIEVNA 177 (398)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 9981899888789956699999999983993578
No 343
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=54.02 E-value=16 Score=16.57 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=54.9
Q ss_pred CEEEEECCCHHH---HHHHH----HHHHCCCCCEEEEEC-CCHHHH----------------------HCC-EEEEC-CC
Q ss_conf 958998865889---99999----998589967899954-983575----------------------117-05512-87
Q gi|254780206|r 1 MRVLLIGSGGRE---HALAW----KIAQSPLLSELWSIP-GNPGIA----------------------QHA-QCVAI-DI 48 (424)
Q Consensus 1 MkILviGsGgrE---hAl~~----~l~~s~~~~~v~~~p-gN~g~~----------------------~~~-~~~~i-~~ 48 (424)
+||.|+=|||-. |-..| .|++-....++|=.- |-.|.. .+. ....+ ..
T Consensus 73 lriGvvlsGgqAPGghNVI~Gl~d~lk~~n~~s~l~GF~~G~~Gl~~~~~~elt~~~i~~~rN~GGFd~lgs~r~ki~t~ 152 (557)
T PRK07085 73 LKVGVILSGGQAPGGHNVIAGLFDGLKKFNPDSKLFGFIGGPLGLLNNKYIELTEEVIDEYRNTGGFDMIGSGRTKIETE 152 (557)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEEEECHHHHHHHHCCCCCCEECCCCCCCCCH
T ss_conf 17999962799983788899999999976899779998777044406977994899999876288852430686545899
Q ss_pred CCHHHHHHHHHHHCCC-EEEECCCHHH--HHHHHHHHHHCC--CCEEECCH
Q ss_conf 8989999999871897-9999795578--748998986058--80670106
Q gi|254780206|r 49 QNHSAIIHFCQEKHID-LVVVGPELPL--VNGISDALNAAG--FKVFGPSQ 94 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iD-lvivgpE~pL--~~gi~d~l~~~g--i~v~Gp~~ 94 (424)
.+++...+.|++.+.| |||||-+... ++=+++.|.+.+ +.|+|-++
T Consensus 153 e~~~~~~~t~~~l~LdgLviiGGd~sntnAa~LAEyf~~~~~~t~VIGvPk 203 (557)
T PRK07085 153 EQKEACLQTVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHNCKTQVIGVPK 203 (557)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999999999998599879997988721638999999998299837993352
No 344
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=54.02 E-value=16 Score=16.57 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=44.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHH--HHHHHCCCEEEECCCHHHHHHH
Q ss_conf 95899886588999999998589967899954983575117055128789899999--9987189799997955787489
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIH--FCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~--~a~~~~iDlvivgpE~pL~~gi 78 (424)
|+|+|+|-|.--..++..|++......++-...+.+....+... +..|-- ..+ ..-...-|+||+.-.......+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l--gv~d~~-~~~~~~~~~~~aDlVivavPi~~~~~~ 80 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL--GVIDEL-TVAGLAEAAAEADLVIVAVPIEATEEV 80 (279)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC--CCCHHH-CCCHHHHHCCCCCEEEEECCHHHHHHH
T ss_conf 48999877467799999999769847997247746778776635--853010-011555413569989995778899999
Q ss_pred HHHHH
Q ss_conf 98986
Q gi|254780206|r 79 SDALN 83 (424)
Q Consensus 79 ~d~l~ 83 (424)
.+.+.
T Consensus 81 l~~l~ 85 (279)
T COG0287 81 LKELA 85 (279)
T ss_pred HHHHC
T ss_conf 99863
No 345
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=53.68 E-value=16 Score=16.53 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=17.8
Q ss_pred HHHHHHHHHCCC-EEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999999871897-999979557874899898605880670
Q gi|254780206|r 53 AIIHFCQEKHID-LVVVGPELPLVNGISDALNAAGFKVFG 91 (424)
Q Consensus 53 ~i~~~a~~~~iD-lvivgpE~pL~~gi~d~l~~~gi~v~G 91 (424)
.+++..++++|| |+++|-+..+. -+..|.+.++||+|
T Consensus 83 ~~~~~l~~~~Id~Li~IGGdgS~~--~a~~l~e~~i~vig 120 (317)
T cd00763 83 KAIEQLKKHGIDALVVIGGDGSYM--GAMRLTEHGFPCVG 120 (317)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHH--HHHHHHHCCCCEEE
T ss_conf 999999982999899956945899--99999974997797
No 346
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=53.54 E-value=16 Score=16.52 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCEEE-ECCCHHHHHHHHHHH---HHCCCCEE
Q ss_conf 9999999871897999-979557874899898---60588067
Q gi|254780206|r 52 SAIIHFCQEKHIDLVV-VGPELPLVNGISDAL---NAAGFKVF 90 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvi-vgpE~pL~~gi~d~l---~~~gi~v~ 90 (424)
+.+.++++..+++.++ +|.=.+=+.|+...+ +..|++|+
T Consensus 81 ~~~~~ia~~~~~~~I~vigtC~~E~ig~~lell~~~~~gv~Ii 123 (416)
T cd01980 81 EAIRKLADPPAYTFIPVISLCVAETAGVAEELLPKQIDGVRVI 123 (416)
T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHCCCHHHCHHHCCCCEEE
T ss_conf 9999860768888899965661765376743375551896599
No 347
>PRK07577 short chain dehydrogenase; Provisional
Probab=53.51 E-value=16 Score=16.51 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=39.7
Q ss_pred EEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHH----HCCCEEE
Q ss_conf 58998865-889999999985899678999549835751170551287898999999987----1897999
Q gi|254780206|r 2 RVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQE----KHIDLVV 67 (424)
Q Consensus 2 kILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~----~~iDlvi 67 (424)
.+||-|++ |---|++..|.++.. +|+..-.|+--..-.+.+..|..|.+.+.++.++ ..||..|
T Consensus 5 ~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~LV 73 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLGH--QVIGIARSAIDDFPGELFACDLADIEQTAATLAQINEIHPVDAIV 73 (234)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 899937788899999999998799--999963475447897699995799999999999999769998999
No 348
>KOG0822 consensus
Probab=53.48 E-value=14 Score=17.02 Aligned_cols=10 Identities=10% Similarity=0.607 Sum_probs=3.7
Q ss_pred HHCCCEEEEC
Q ss_conf 7189799997
Q gi|254780206|r 60 EKHIDLVVVG 69 (424)
Q Consensus 60 ~~~iDlvivg 69 (424)
+.+.+.+|.|
T Consensus 259 ~~~a~~iI~~ 268 (649)
T KOG0822 259 KVNAQIIILG 268 (649)
T ss_pred HCCCCEEEEC
T ss_conf 1166389947
No 349
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , : The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand. The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 . The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain. The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=53.48 E-value=16 Score=16.51 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=33.0
Q ss_pred HHHHHHHHHHCCCEEEE-CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99999998718979999-795578748998986058806701066655520102357888765310
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVV-GPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 52 ~~i~~~a~~~~iDlviv-gpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP 116 (424)
..+-+.|++.+++..+- +++.- ..|.+....+=++|| |++..+.-+|+...+.|||
T Consensus 64 ~~l~k~A~~~~~~~~i~A~~~~~----~~e~~~~~d~VlLaP-----Q~~~~~~~lk~~t~~~Gip 120 (142)
T TIGR00853 64 NKLNKAAKEYGVPVKIAAVSYGA----AMEILDDADVVLLAP-----QVAYMLPDLKKETDKKGIP 120 (142)
T ss_pred HHHHHHHHHCCCCEEEEEECCCH----HHHHHHHHCEEEEHH-----HHHHHHHHHHHHCCCCCCC
T ss_conf 99999998459975888405763----443353504311203-----2675579999851358975
No 350
>pfam06973 DUF1297 Domain of unknown function (DUF1297). This family represents the C-terminus (approximately 200 residues) of a number of archaeal proteins of unknown function. One member is annotated as being a possible carboligase enzyme.
Probab=53.41 E-value=16 Score=16.50 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCCCCCEEEECC--CCCCCCCCCCCCCCCCCCC-------C---CC--C---CCCCCCEEECCCCCCCCCC
Q ss_conf 177788775205752344215--7763103520001113566-------5---44--4---4434430000123443222
Q gi|254780206|r 175 STVIIEEYLEGFEVSFFALCD--GKTAIPFTTARDHKRIHDG-------D---IG--P---NTGGMGACSPALGMSQELY 237 (424)
Q Consensus 175 ~~VliEefl~G~E~Sv~~i~d--G~~~~~l~~~~dyKr~~~~-------d---~G--p---nTGGMGa~~p~~~~~~~~~ 237 (424)
+...||||+-|.-+-++-|.. -+++-.|..-+-|..--|+ | .+ | -||- .|. .+-+++.
T Consensus 21 ~~a~IeEyv~G~~~~~~yFySpl~~~lEllg~D~R~esniDg~~Rlpa~~Ql~~~~~p~~vvvGn----~p~-vlRESLL 95 (188)
T pfam06973 21 EKARIEEYVIGAPFNFHYFYSPLKDRVELLGIDRRYESNLDGLVRLPAKQQLELNIEPTYVVVGN----IPA-VLRESLL 95 (188)
T ss_pred HHCEEEEEECCCEEEEEEECCCCCCCEEEEECCCEEECCCHHHHCCCCHHHHHCCCCCCEEEECC----CCC-EEEHHHH
T ss_conf 01267666337546654410300063236631110232603442288277861689860799888----431-4407657
Q ss_pred EEEECCHHHHHHHHHHHC-CCEEEEEEEEEEEEECCE-EEEEEEEEEE-CCC
Q ss_conf 010000089999986204-623566445448985570-4899988651-477
Q gi|254780206|r 238 STVIQKIILPTIEGMQKE-QNPFQGVLFAGLMITEQG-PYLIEYNVRF-GDP 286 (424)
Q Consensus 238 ~~i~~~i~~~~~~~l~~~-~~~y~G~l~~~~m~t~~g-p~viE~N~R~-GDP 286 (424)
.++.+ .=+..+++.+++ .-...|.+..+.++|++. -+|-|+.+|. |.|
T Consensus 96 ~~vfe-~ge~fV~ask~l~~PG~iGPFcLq~ivt~dle~vvFevS~RI~ggt 146 (188)
T pfam06973 96 EKVFE-MGEKFVEASKELVPPGIIGPFCLQSIVTDDLEFVVFEVSARIVGGT 146 (188)
T ss_pred HHHHH-HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCC
T ss_conf 99999-9999999999856998613444667887986199999853004888
No 351
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=53.41 E-value=16 Score=16.50 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=42.0
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCHHHHHHH-
Q ss_conf 8998865-88999999998589967899954983575117055128789899999998718979999--7955787489-
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPELPLVNGI- 78 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~pL~~gi- 78 (424)
||||-++ ...|-|++.|++-.. .+.+.+ .|..+.+++ ++.++|.+|. ||..|-.+|.
T Consensus 2 ILlIDn~DsFT~ni~~~l~~~g~--~~~v~~-------------~d~~~~~~i----~~~~pd~IiLSpGPg~p~~~~~~ 62 (195)
T PRK07649 2 ILMIDNYDSFTYNLVQYLGELGQ--ELVVKR-------------NDEVTISDI----ENMKPDFLMISPGPCSPNEAGIS 62 (195)
T ss_pred EEEEECCCCHHHHHHHHHHHCCC--EEEEEC-------------CCCCCHHHH----HHCCCCEEEECCCCCCHHHCCCC
T ss_conf 99995898079999999997899--799988-------------996899999----84198989988999995784761
Q ss_pred ---HHHHHHCCCCEEECC
Q ss_conf ---989860588067010
Q gi|254780206|r 79 ---SDALNAAGFKVFGPS 93 (424)
Q Consensus 79 ---~d~l~~~gi~v~Gp~ 93 (424)
.+.+ ..++|++|=.
T Consensus 63 ~~~~~~~-~~~iPILGIC 79 (195)
T PRK07649 63 MEVIRYF-AGKIPIFGVC 79 (195)
T ss_pred HHHHHHH-CCCCCEEEEC
T ss_conf 4679975-2899784302
No 352
>PRK10586 hypothetical protein; Provisional
Probab=53.38 E-value=16 Score=16.50 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHCCCEEE-ECCCHHH--HHHHHHHHHHCCCCEEE-CC
Q ss_conf 89999999871897999-9795578--74899898605880670-10
Q gi|254780206|r 51 HSAIIHFCQEKHIDLVV-VGPELPL--VNGISDALNAAGFKVFG-PS 93 (424)
Q Consensus 51 ~~~i~~~a~~~~iDlvi-vgpE~pL--~~gi~d~l~~~gi~v~G-p~ 93 (424)
++.+.+.+.+ +.|.|| +|--..+ +..+++. .++|++- ||
T Consensus 76 i~rl~~~~~~-~~d~IigvGGGK~iDtaK~vA~~---~~~pvv~vPT 118 (362)
T PRK10586 76 VAQLAAESGD-DRQVVIGVGGGALLDTAKALARR---LGLPFVAIPT 118 (362)
T ss_pred HHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHHH---CCCCEEEEEC
T ss_conf 9999997355-88789995571999999999998---1999899605
No 353
>PRK06398 aldose dehydrogenase; Validated
Probab=53.28 E-value=16 Score=16.49 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=39.3
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCC-HHHHHCCEEEECCCCCHHHHHHHHHHH-----CCCEEE
Q ss_conf 8998865-8899999999858996789995498-357511705512878989999999871-----897999
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGN-PGIAQHAQCVAIDIQNHSAIIHFCQEK-----HIDLVV 67 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN-~g~~~~~~~~~i~~~d~~~i~~~a~~~-----~iDlvi 67 (424)
+||-|++ |--.|++.+|.+... +|+++.-+ +......+.+..|.+|.+++.+++.+. ++|..|
T Consensus 9 alVTGgs~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~i~~Dvt~~~~v~~~v~~~~~~~G~iDiLV 78 (256)
T PRK06398 9 VIVTGGSSGIGLAIVSRFVDEGS--KVVSISRSEPEDINKSDHIKCDVTNEDEVKNAINEISKKYGRIDVLV 78 (256)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99968787899999999998699--99999487512517223898547999999999999999839997999
No 354
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=53.23 E-value=16 Score=16.48 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=19.9
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEE
Q ss_conf 958998865889-99999998589967899
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELW 29 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~ 29 (424)
|||.|.|.-||- .+|+..+.+++...-+.
T Consensus 3 ikI~i~Ga~GrMG~~i~~~i~~~~~~~l~~ 32 (265)
T PRK00048 3 IKVGVAGASGRMGRELIEAVEAAEDLELVA 32 (265)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 599998888877999999998689979999
No 355
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase; InterPro: IPR013445 This entry contains CDP-glucose 4,6-dehydratases from a variety of Gram-negative and Gram-positive bacteria. Members are typically encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate CDP-D-glucose. This is used by the proteins in this entry to produce CDP-4-keto-6-deoxyglucose..
Probab=53.01 E-value=7.7 Score=18.84 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=24.7
Q ss_pred EECCCCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 51287898999999987189799997955787
Q gi|254780206|r 44 VAIDIQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 44 ~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
+.-|++|.++|.+++++.+||.||==--.|||
T Consensus 63 ~~gDIrD~~~L~~~~~~~~PeIvFHlAAQPLV 94 (361)
T TIGR02622 63 IFGDIRDAAKLEKAIAEFKPEIVFHLAAQPLV 94 (361)
T ss_pred EEECCCCHHHHHHHHHHCCCCEEEHHHHHHHH
T ss_conf 33032327899999997289898333542788
No 356
>PRK05637 anthranilate synthase component II; Provisional
Probab=52.78 E-value=17 Score=16.43 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=41.0
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCHHHHHH
Q ss_conf 958998865-88999999998589967899954983575117055128789899999998718979999--795578748
Q gi|254780206|r 1 MRVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPELPLVNG 77 (424)
Q Consensus 1 MkILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~pL~~g 77 (424)
+|||+|-+. ...|-|++-|..... ++.+.+ | ..+.+++ ++.++|.+|+ ||-.|--+|
T Consensus 2 ~~ILlIDnyDSFT~Nl~~~l~~~g~--~v~V~r-n-------------~~~~~~~----~~~~pd~ivlSPGPg~P~d~g 61 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGY--KCTVFR-N-------------TVPVETI----LAANPDLICLSPGPGYPADAG 61 (208)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCC--EEEEEE-C-------------CCCHHHH----HHCCCCEEEECCCCCCHHHCC
T ss_conf 7799994889759999999986799--079996-9-------------9999999----851999599999999957775
Q ss_pred HH-HHHHH--CCCCEEEC
Q ss_conf 99-89860--58806701
Q gi|254780206|r 78 IS-DALNA--AGFKVFGP 92 (424)
Q Consensus 78 i~-d~l~~--~gi~v~Gp 92 (424)
.. +.++. ..+|++|-
T Consensus 62 ~~~~~~~~~~~~iPILGI 79 (208)
T PRK05637 62 NMMALIERTLGQIPLLGI 79 (208)
T ss_pred CHHHHHHHHHCCCCEEEH
T ss_conf 749999997356982211
No 357
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=52.48 E-value=17 Score=16.40 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=48.7
Q ss_pred EEEEECCCH----HHHHHHHHHHHCCCCCEEEEECCCHH-HHHC-CEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 589988658----89999999985899678999549835-7511-70551287898999999987189799997955787
Q gi|254780206|r 2 RVLLIGSGG----REHALAWKIAQSPLLSELWSIPGNPG-IAQH-AQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLV 75 (424)
Q Consensus 2 kILviGsGg----rEhAl~~~l~~s~~~~~v~~~pgN~g-~~~~-~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~ 75 (424)
.|-|||-=- +=|++..-|.++..--+||=.+-+.+ .-.. -+|++ ++.+. ....|||+|+---+-++
T Consensus 9 SvAVIGAS~~~gKVGy~i~~NL~~~Gy~G~~YPVNpk~~i~i~Gr~k~Y~-~~~~~-------dP~~VDLAVivvPa~~v 80 (457)
T TIGR02717 9 SVAVIGASRDEGKVGYAIMKNLIEGGYKGKIYPVNPKAGIEILGRVKAYP-SVLEI-------DPDEVDLAVIVVPAKLV 80 (457)
T ss_pred CEEEECCCCCCCCCCHHHHEEEECCCCEEEEEEECCCCCEEEEECCCCCC-CHHHC-------CCCCCCEEEEECCHHHH
T ss_conf 15897124889851002200000378303687622788714630114578-71114-------89973479997285679
Q ss_pred HHHHHHHHHCCCCEE-----E---CCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 489989860588067-----0---1066655520102357888765310
Q gi|254780206|r 76 NGISDALNAAGFKVF-----G---PSQRAAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~-----G---p~~~aa~le~sK~~~K~~l~~~gIP 116 (424)
-.+++.+-+.|++-. | ...+.++|| +|. ++.++|+|++
T Consensus 81 p~v~eECG~KGVkg~vvI~AGF~E~G~eG~~LE-~~l--~~~a~kYg~R 126 (457)
T TIGR02717 81 PQVVEECGEKGVKGAVVITAGFKEVGEEGAELE-QKL--VEIARKYGMR 126 (457)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH-HHH--HHHHHHCCCE
T ss_conf 999999861795189997148645316789999-999--9999767881
No 358
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase; InterPro: IPR013375 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Many archaeal species lack cysteinyl-tRNA synthetase, an essential enzyme that provides Cys-tRNA(Cys) in other organisms. Instead, in a two step pathway, tRNA-Cys is acylated with O-phosphoserine (Sep) to form Sep-tRNA(Cys), which is subsequently converted to Cys-tRNA(Cys) . This pathway is also thought to function as the sole route of cysteine biosynthesis in these organisms. Several other archaeal species use both this pathway and direct tRNA(Cys) aminoacylation to synthesize Cys-tRNA(Cys), but this pathway appears to be the only route for cysteine biosynthesis. Proteins in this entry catalyse the second step in this pathway using pyridoxal phosphate and a sulphur donor to synthesize Cys from Sep while attached to the tRNA..
Probab=52.38 E-value=17 Score=16.39 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=44.5
Q ss_pred ECCCHHH------HHHHHHHHHCCCCCEEEEECCCHHHHHC------------------CEEEECCCCCHHHHHHHHHHH
Q ss_conf 8865889------9999999858996789995498357511------------------705512878989999999871
Q gi|254780206|r 6 IGSGGRE------HALAWKIAQSPLLSELWSIPGNPGIAQH------------------AQCVAIDIQNHSAIIHFCQEK 61 (424)
Q Consensus 6 iGsGgrE------hAl~~~l~~s~~~~~v~~~pgN~g~~~~------------------~~~~~i~~~d~~~i~~~a~~~ 61 (424)
+=.|+|| |||| +.. .+.|+.+|++.... ...+.+++.....+++=..+.
T Consensus 72 ~t~GARe~KfaVMhalC----~~G---D~vV~D~~AHYtsyvAAEragl~v~eVPy~~g~P~Y~v~~e~Y~~viee~~d~ 144 (381)
T TIGR02539 72 VTHGAREGKFAVMHALC----KEG---DVVVLDGLAHYTSYVAAERAGLNVKEVPYETGHPEYKVDPEGYKEVIEEVEDE 144 (381)
T ss_pred CCCCCCHHHHHHHHHHC----CCC---CEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHCC
T ss_conf 06775024578876408----998---98998587454458999754972788165588860764166788888655202
Q ss_pred ---CCCEEEE---CCC---HHHHHHHHHHHHHCCCCEEECCH
Q ss_conf ---8979999---795---57874899898605880670106
Q gi|254780206|r 62 ---HIDLVVV---GPE---LPLVNGISDALNAAGFKVFGPSQ 94 (424)
Q Consensus 62 ---~iDlviv---gpE---~pL~~gi~d~l~~~gi~v~Gp~~ 94 (424)
++-|++. -.| -+=+.++++..++.|+|.+=-.+
T Consensus 145 ~G~~~~LallThvDG~YGNL~DA~kva~vc~~~gvPlLLNCA 186 (381)
T TIGR02539 145 SGKPVALALLTHVDGEYGNLADAKKVAKVCREKGVPLLLNCA 186 (381)
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf 798834899840268867511245687665420786221245
No 359
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=52.35 E-value=17 Score=16.39 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=8.7
Q ss_pred EEEEE-CCCH--HH---HHHHHHH
Q ss_conf 58998-8658--89---9999999
Q gi|254780206|r 2 RVLLI-GSGG--RE---HALAWKI 19 (424)
Q Consensus 2 kILvi-GsGg--rE---hAl~~~l 19 (424)
||.|. |.|| .. -+||.++
T Consensus 1 kIaV~SgKGGVGKTT~a~nLA~~l 24 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL 24 (179)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 989995899860999999999974
No 360
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=51.83 E-value=17 Score=16.33 Aligned_cols=105 Identities=14% Similarity=0.264 Sum_probs=45.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEEC--CCCCHHHHHHHHH----HHCCCEE-EEC--CCHH
Q ss_conf 89988658899999999858996789995498357511705512--8789899999998----7189799-997--9557
Q gi|254780206|r 3 VLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAI--DIQNHSAIIHFCQ----EKHIDLV-VVG--PELP 73 (424)
Q Consensus 3 ILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i--~~~d~~~i~~~a~----~~~iDlv-ivg--pE~p 73 (424)
-||+|+=+=.|= .||-.-.-+|--| .-+|+.+.+. ++ -..+.+++.+.+. ++++-.+ ++| |..-
T Consensus 29 fLVvG~~tCah~-----~q~a~Gvmifaep-Rf~ta~leE~-Dl~~~~~~~~eL~r~v~~i~~~r~p~~iFlvgtCpseV 101 (396)
T cd01979 29 FLVVGTKTCAHF-----LQNALGVMIFAEP-RFAMAELEEG-DLSALLNDYAELDRVVTQIKRDRNPSVIFLIGSCTTEV 101 (396)
T ss_pred EEEECCCHHHHH-----HHHHHCCEEECCC-CCCCCCCCCH-HHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 364337506767-----6641024543574-3222304620-55423696699999999999748994799972585777
Q ss_pred H---HHHHHHHHHH-CCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 8---7489989860-58806701066655520102357888765310
Q gi|254780206|r 74 L---VNGISDALNA-AGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 74 L---~~gi~d~l~~-~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP 116 (424)
+ ..+++..|+. .|+||+ +..+.=||+.+.-.-+-+-++=+|
T Consensus 102 Ik~DLe~~A~rls~~~~v~Vv--~vs~sGiettFTQGEDa~LaAlvp 146 (396)
T cd01979 102 IKMDLEGAAPRLSAEIGVPIL--VASASGLDYTFTQGEDTVLAALVP 146 (396)
T ss_pred HHHHHHHHHHHHHHCCCCEEE--EEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 752499998875326795599--952687547576799999999986
No 361
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=51.77 E-value=17 Score=16.33 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=49.5
Q ss_pred HHHHHHHHHHCCCEEEECCCH-HH----HHHHHHHHHHCCCCEEECCHHHHHHH-HCCHHHHHHHHH--HHHHCCCCCCC
Q ss_conf 999999987189799997955-78----74899898605880670106665552-010235788876--53101111223
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPEL-PL----VNGISDALNAAGFKVFGPSQRAAKLE-SSKSFAKKFCTK--YGIPTATYQHF 123 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE~-pL----~~gi~d~l~~~gi~v~Gp~~~aa~le-~sK~~~K~~l~~--~gIPt~~~~~~ 123 (424)
..+.+++-....|++++--|- |+ ..-+.-+.+..|.+.+ .|+- .+....+..|.. .||=.| .+
T Consensus 23 p~~~Ei~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~i------VRvp~~~~~~i~~~LD~Ga~GiivP---~V 93 (249)
T TIGR03239 23 PITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPV------VRPPWNEPVIIKRLLDIGFYNFLIP---FV 93 (249)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCE------EECCCCCHHHHHHHHCCCCCEEEEC---CC
T ss_conf 89999997189699998104489999999999999984699848------9799998789999970899878951---74
Q ss_pred CCCHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 4401111121012420256304653430002
Q gi|254780206|r 124 SDPMKAKQYVQNKSMPIVVKADGLCAGKGVV 154 (424)
Q Consensus 124 ~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~ 154 (424)
++.++|.++++...|| |. |.||+.
T Consensus 94 ~t~eea~~~v~a~kyp----P~---G~Rg~~ 117 (249)
T TIGR03239 94 ESAEEAERAVAATRYP----PE---GIRGVS 117 (249)
T ss_pred CCHHHHHHHHHHHCCC----CC---CCCCCC
T ss_conf 5599999999973449----99---998887
No 362
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase; InterPro: IPR004399 Phosphomethylpyrimidine kinase (2.7.4.7 from EC), also known as HMP-phosphate kinase, catalyses the phosphorylation of HMP-P to HMP-PP in the reaction: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine = ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine during the biosynthesis of thiamine.; GO: 0008972 phosphomethylpyrimidine kinase activity, 0009228 thiamin biosynthetic process.
Probab=51.60 E-value=8.2 Score=18.62 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=90.7
Q ss_pred HHHHHHHHHHCCCEEEEC--CCHHHHHHHHHHHHHCCC--CEEE-C---CHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999987189799997--955787489989860588--0670-1---0666555201023578887653101111223
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVG--PELPLVNGISDALNAAGF--KVFG-P---SQRAAKLESSKSFAKKFCTKYGIPTATYQHF 123 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivg--pE~pL~~gi~d~l~~~gi--~v~G-p---~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~ 123 (424)
+++...+.+..||-+=+| .+.-++.-|+..|++..+ +++= | ++..++|-.+-.. +.++++=+|-+.=-+
T Consensus 57 aQl~aV~~D~~~~a~KtGML~saeIve~Va~~l~~y~~~~~~VvDPVMVAksG~~Ll~~~a~--~~l~~~LLP~A~~~T- 133 (264)
T TIGR00097 57 AQLDAVLSDIKVDAVKTGMLASAEIVEAVAKKLREYDVQIPIVVDPVMVAKSGAALLEEEAV--EALKKRLLPLATLVT- 133 (264)
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCCHHHH--HHHHHHHCCCEEEEC-
T ss_conf 99999861089655886245670777866776540488303897672165287546547899--999997387114306-
Q ss_pred CCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHH-HHH--CCCCCEEEECCCCCC
Q ss_conf 44011111210124202563046534300023235677888788751-44531777887-752--057523442157763
Q gi|254780206|r 124 SDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCF-QQINSTVIIEE-YLE--GFEVSFFALCDGKTA 199 (424)
Q Consensus 124 ~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~-~~~~~~VliEe-fl~--G~E~Sv~~i~dG~~~ 199 (424)
=|.-||...+ |..-++|.+|+.+|.+++. +-..+.|||=- -++ +.|.+++++.+|+.+
T Consensus 134 PN~pEAe~L~------------------g~~~I~~~~dm~~AAk~l~~~lG~~~vl~KGGHl~hf~~~~~~Dv~~~~~~~ 195 (264)
T TIGR00097 134 PNLPEAEALL------------------GATKIRTEEDMIKAAKKLREELGPKAVLIKGGHLEHFGDEDAVDVLYDGGEI 195 (264)
T ss_pred CCHHHHHHHC------------------CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCEE
T ss_conf 8979999980------------------8966589899999999998851788089827734446777763168867838
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 1-0352000111356654444434430
Q gi|254780206|r 200 I-PFTTARDHKRIHDGDIGPNTGGMGA 225 (424)
Q Consensus 200 ~-~l~~~~dyKr~~~~d~GpnTGGMGa 225 (424)
. .|.. +|+- .|||.|=||
T Consensus 196 ~~~l~~----~rI~----TkNTHGTGC 214 (264)
T TIGR00097 196 HFILKA----PRIE----TKNTHGTGC 214 (264)
T ss_pred EEEEEC----CCCC----CCCCCCCHH
T ss_conf 999805----7558----788767112
No 363
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=51.57 E-value=13 Score=17.15 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=46.8
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHC-CCCEEEEEECCC
Q ss_conf 8998986058806701066655520102357888765310111-1223440111112101-242025630465
Q gi|254780206|r 77 GISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTAT-YQHFSDPMKAKQYVQN-KSMPIVVKADGL 147 (424)
Q Consensus 77 gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~-~~~~~~~~ea~~~~~~-~g~PvVVKp~~~ 147 (424)
.+...|++.|+.-.=.....+-+.....-++++.+..|||.|+ |.++.+.++ +-+++. -|-|-.-+|...
T Consensus 4 ~~~~~L~~lGlt~yEa~vY~aLl~~g~~tA~eis~~sgvP~~kvY~vl~sLe~-kG~v~~~~g~P~~y~av~p 75 (247)
T COG1378 4 ELEENLQKLGLTEYEAKVYLALLCLGEATAKEISEASGVPRPKVYDVLRSLEK-KGLVEVIEGRPKKYRAVPP 75 (247)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHH-CCCEEECCCCCCEEEECCH
T ss_conf 79999998199788999999999818877999998659993229999999987-8877840799844885799
No 364
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=51.52 E-value=11 Score=17.69 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=14.3
Q ss_pred CCCEEEEECCCC-----CCHHHHHHHHHCC
Q ss_conf 751044332654-----4115666542013
Q gi|254780206|r 286 PECQAMMMRLES-----DILEILNSCVHGN 310 (424)
Q Consensus 286 PE~q~ilp~L~~-----dl~~il~~~~~g~ 310 (424)
||+.++=|+=+. -++++|.+..-+.
T Consensus 482 ~~v~v~EPlWK~IlSNKAILPlLW~~fP~H 511 (619)
T PRK10507 482 PEVLVFEPLWTVIPGNKAILPILWSLFPHH 511 (619)
T ss_pred CCCEEECCCHHHHCCCCHHHHHHHHHCCCC
T ss_conf 772574431342425524889999867998
No 365
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=51.47 E-value=12 Score=17.45 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q ss_conf 7888765310
Q gi|254780206|r 107 KKFCTKYGIP 116 (424)
Q Consensus 107 K~~l~~~gIP 116 (424)
|+++.+.+++
T Consensus 162 k~l~~~~~~~ 171 (411)
T PRK08099 162 KAFMAEKGIQ 171 (411)
T ss_pred HHHHHHCCCC
T ss_conf 9999733789
No 366
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=51.43 E-value=17 Score=16.29 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=29.2
Q ss_pred CEEEEECCCHH-HHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 95899886588-9999999985899678999549835751170551287898999999987189799997
Q gi|254780206|r 1 MRVLLIGSGGR-EHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 1 MkILviGsGgr-EhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivg 69 (424)
||||||-.--. -..|...|.+... +|.++ .|.++.++.+.++++|+++..
T Consensus 1 MkILiVEDd~~l~~~l~~~L~~~g~--~V~~a-----------------~~g~~al~~~~~~~~DlvilD 51 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGY--VIDAV-----------------SDGRDGLYLALKDDYALIILD 51 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCC--EEEEE-----------------CCHHHHHHHHHCCCCCEEEEC
T ss_conf 9899996989999999999998899--99998-----------------999999999852899999984
No 367
>pfam06134 RhaA L-rhamnose isomerase (RhaA). This family consists of several bacterial L-rhamnose isomerase proteins (EC:5.3.1.14).
Probab=51.34 E-value=17 Score=16.28 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEE---ECCCCCCCCCCC--HHHHHHHHHHHHHHHCCC-CH
Q ss_conf 102357888765310111122344011111210124202563---046534300023--235677888788751445-31
Q gi|254780206|r 102 SKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK---ADGLCAGKGVVV--AATVDEATSAIDRCFQQI-NS 175 (424)
Q Consensus 102 sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVK---p~~~agGkGV~i--~~~~~e~~~~~~~~~~~~-~~ 175 (424)
||.. |+|.-+|++.+-+ =+..|.+++|-|+|.- ||| .|-+-+ ..-+.-+.+.++++|... +.
T Consensus 149 D~~I-R~FWIeH~k~~R~--------Ia~~fg~~lg~~cv~NiWipDG---~KD~pvDR~~pR~Rl~~SLD~I~ae~~d~ 216 (416)
T pfam06134 149 DKEI-RQFWIDHCKASRK--------ISEYFGKELGTPSLTNIWIPDG---YKDIPSDRLTPRKRLKEALDEVFSEKLDE 216 (416)
T ss_pred CHHH-HHHHHHHHHHHHH--------HHHHHHHHHCCCCEEEEECCCC---CCCCCCCCHHHHHHHHHHHHHHHHCCCCH
T ss_conf 8789-9999999799999--------9999999849971355434887---76785210118999999899998542687
Q ss_pred ---HHHHHHHHHCCCCCEEEECCCCCCCCCC
Q ss_conf ---7778877520575234421577631035
Q gi|254780206|r 176 ---TVIIEEYLEGFEVSFFALCDGKTAIPFT 203 (424)
Q Consensus 176 ---~VliEefl~G~E~Sv~~i~dG~~~~~l~ 203 (424)
.--||--|-|.- +++.+-|.+=..|.
T Consensus 217 ~~~~daVEsKlFGIG--~EsytVGShEFy~g 245 (416)
T pfam06134 217 AYNLDAVESKLFGIG--AESYTVGSHEFYMG 245 (416)
T ss_pred HHHHHHHHHHHHCCC--CEEEEECCHHHHHH
T ss_conf 650567767540144--20365151899989
No 368
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=51.08 E-value=17 Score=16.25 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=49.1
Q ss_pred CEEEEECCC---HHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHC--------CEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 958998865---88999999998589967899954-98357511--------7055128789899999998718979999
Q gi|254780206|r 1 MRVLLIGSG---GREHALAWKIAQSPLLSELWSIP-GNPGIAQH--------AQCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 1 MkILviGsG---grEhAl~~~l~~s~~~~~v~~~p-gN~g~~~~--------~~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
|||.|+|.- |+| |..-|.+-|.++-++++- .+.|...- .....+...|.+.+ ..++|+++-
T Consensus 2 ~kVaIvGAtG~vG~e--li~lL~~hp~~ei~~las~~saGk~i~~~~p~l~~~~~~~~~~~~~~~~-----~~~~Divf~ 74 (345)
T PRK00436 2 IKVAIVGASGYTGGE--LLRLLLNHPEVEIVYLTSRSSAGKPLSDLHPHLRGLVDLVLEPLDPEEI-----AAGADVVFL 74 (345)
T ss_pred CEEEEECCCCHHHHH--HHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEECCHHHH-----CCCCCEEEE
T ss_conf 199998966188999--9999980998679999757868973778581103777874764998894-----269999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 795578748998986058806701
Q gi|254780206|r 69 GPELPLVNGISDALNAAGFKVFGP 92 (424)
Q Consensus 69 gpE~pL~~gi~d~l~~~gi~v~Gp 92 (424)
.-..-.+..++..+.++|++|+=-
T Consensus 75 alp~~~S~~~~~~~~~~g~~VID~ 98 (345)
T PRK00436 75 ALPHGVSMELAPQLLEAGVKVIDL 98 (345)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 898389999999998669879989
No 369
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=51.01 E-value=18 Score=16.24 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=40.4
Q ss_pred EEEECCCH-HHHHHHHHHHHCCCCCEEEEEC-CC-HHH----HHCCEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 89988658-8999999998589967899954-98-357----511705512878989999999871897999
Q gi|254780206|r 3 VLLIGSGG-REHALAWKIAQSPLLSELWSIP-GN-PGI----AQHAQCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 3 ILviGsGg-rEhAl~~~l~~s~~~~~v~~~p-gN-~g~----~~~~~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
|||.|+-| --..|+..|.+... +|...- .+ ... ....+.+..|..|.+.+.++.++.++|.||
T Consensus 1 ILItGasGfiG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~D~Vi 70 (235)
T pfam01370 1 ILVTGGTGFIGSALVRRLLQEGY--EVIVLGRRRRSESLNTGRIRFRFHEGDLTDPDALERLLAEVQPDAVI 70 (235)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf 79972897999999999997879--89999899730122211467659996588999999998538998999
No 370
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=50.84 E-value=18 Score=16.23 Aligned_cols=94 Identities=20% Similarity=0.330 Sum_probs=56.2
Q ss_pred CEEEEECCCHHH---HHHH----HHHHHCCCCCEEEEECCCH-HHH----------------------HCC-EEEEC-CC
Q ss_conf 958998865889---9999----9998589967899954983-575----------------------117-05512-87
Q gi|254780206|r 1 MRVLLIGSGGRE---HALA----WKIAQSPLLSELWSIPGNP-GIA----------------------QHA-QCVAI-DI 48 (424)
Q Consensus 1 MkILviGsGgrE---hAl~----~~l~~s~~~~~v~~~pgN~-g~~----------------------~~~-~~~~i-~~ 48 (424)
+||.|+=|||.. |-.. .+|++-..-..+|=.-|.| |.. .+. -...| ..
T Consensus 73 l~vGvvlsGgqAPGGHNVI~Gl~d~lk~~n~~s~l~GF~~Gp~Gl~~~~~~eit~~~i~~yrN~GGfdmi~sgr~ki~t~ 152 (550)
T cd00765 73 LKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETE 152 (550)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 18999985799995157498799999964988779997578423206967980899998765188851036885624899
Q ss_pred CCHHHHHHHHHHHCCC-EEEECCCHHH--HHHHHHHHHHCC--CCEEECCH
Q ss_conf 8989999999871897-9999795578--748998986058--80670106
Q gi|254780206|r 49 QNHSAIIHFCQEKHID-LVVVGPELPL--VNGISDALNAAG--FKVFGPSQ 94 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iD-lvivgpE~pL--~~gi~d~l~~~g--i~v~Gp~~ 94 (424)
.+++...+.|++.+.| |||||-+... ++=+++.|.+.+ ..|+|-++
T Consensus 153 eq~~~~~~~~~~l~LdgLVIiGGddSnTnaa~LAEyf~~~~~~t~VIGvPk 203 (550)
T cd00765 153 DQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPK 203 (550)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCE
T ss_conf 999999999998599879996898734879999999996499955993453
No 371
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=50.83 E-value=17 Score=16.34 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=31.1
Q ss_pred EEEECCC--HHHHHHHHHHHHCCCCCEEEEEC---CC------HHH-HHCCEEEECCCCCHHHHHHHHHH
Q ss_conf 8998865--88999999998589967899954---98------357-51170551287898999999987
Q gi|254780206|r 3 VLLIGSG--GREHALAWKIAQSPLLSELWSIP---GN------PGI-AQHAQCVAIDIQNHSAIIHFCQE 60 (424)
Q Consensus 3 ILviGsG--grEhAl~~~l~~s~~~~~v~~~p---gN------~g~-~~~~~~~~i~~~d~~~i~~~a~~ 60 (424)
|+|||+| |. ++||.|++......|+.-. |. +|| +..+|+.. ..+.+.+++.+
T Consensus 1 ~~ViGGGvIGL--~~A~~L~~~G~~V~l~~~~~~~g~~AS~~AaGMLAP~aE~~~----~~~~~f~L~~~ 64 (357)
T TIGR02352 1 VLVIGGGVIGL--SVAVELAERGHSVTLLDRDPTVGGGASWAAAGMLAPVAEVEY----AEDPLFDLALE 64 (357)
T ss_pred CEEECCHHHHH--HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHH
T ss_conf 97845318789--999999974993899965860456778866433243266746----76747899999
No 372
>PRK08267 short chain dehydrogenase; Provisional
Probab=50.75 E-value=18 Score=16.22 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=37.3
Q ss_pred CEEEEE-CCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHH-H----C----CEEEECCCCCHHHHHH----HHHHH--CC
Q ss_conf 958998-865-88999999998589967899954983575-1----1----7055128789899999----99871--89
Q gi|254780206|r 1 MRVLLI-GSG-GREHALAWKIAQSPLLSELWSIPGNPGIA-Q----H----AQCVAIDIQNHSAIIH----FCQEK--HI 63 (424)
Q Consensus 1 MkILvi-GsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~-~----~----~~~~~i~~~d~~~i~~----~a~~~--~i 63 (424)
||+-+| |.+ |--.|+|..|.+... +|+++.-|.... . + ...+..|.+|.+++.+ ++++. ++
T Consensus 1 MK~vlITGassGIG~a~A~~~a~~G~--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~~G~i 78 (258)
T PRK08267 1 MKSIFITGAASGIGRATARLFAARGW--RVGAYDINEDGLAALAAELGAERAWTGALDVTDRAAWDAALADFCAATGGRL 78 (258)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99899907226899999999998799--9999988899999999983699679999117999999999999999958998
Q ss_pred CEEE
Q ss_conf 7999
Q gi|254780206|r 64 DLVV 67 (424)
Q Consensus 64 Dlvi 67 (424)
|..|
T Consensus 79 DiLV 82 (258)
T PRK08267 79 DVLF 82 (258)
T ss_pred CEEE
T ss_conf 6899
No 373
>KOG3851 consensus
Probab=50.62 E-value=18 Score=16.20 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=36.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEE---------EEECC----CHHHHHCC----EEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 589988658899999999858996789---------99549----83575117----05512878989999999871897
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSEL---------WSIPG----NPGIAQHA----QCVAIDIQNHSAIIHFCQEKHID 64 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v---------~~~pg----N~g~~~~~----~~~~i~~~d~~~i~~~a~~~~iD 64 (424)
||||+|+|+---++|-++.+--.-.+| |.-|| -+|+..++ +...+-+.+..-|.+++++.++|
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P~ 120 (446)
T KOG3851 41 KVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNPD 120 (446)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 89998678630578999986568985577552153245765178643044465536741111567758999888750877
No 374
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=50.57 E-value=18 Score=16.20 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=41.5
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCHHHHHHH-
Q ss_conf 8998865-88999999998589967899954983575117055128789899999998718979999--7955787489-
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPELPLVNGI- 78 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~pL~~gi- 78 (424)
||||-++ ...|-|++.|++-.. .+-+.| .|..+.+.+. +.++|.+|. ||..|..++.
T Consensus 2 iLiiDn~DsfT~ni~~~l~~lg~--~v~vv~-------------~d~~~~~~i~----~~~p~~IilS~GPg~p~~~~~~ 62 (192)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGA--EVKVVR-------------NDEIDIAGIE----ALNPSHLVISPGPCTPNEAGIS 62 (192)
T ss_pred EEEEECCCCHHHHHHHHHHHCCC--EEEEEE-------------CCCCCHHHHH----HCCCCEEEECCCCCCHHHCCCC
T ss_conf 99997999779999999987799--289996-------------9989999998----4297959998999996782861
Q ss_pred ---HHHHHHCCCCEEECC
Q ss_conf ---989860588067010
Q gi|254780206|r 79 ---SDALNAAGFKVFGPS 93 (424)
Q Consensus 79 ---~d~l~~~gi~v~Gp~ 93 (424)
.+.+ ..++|++|=.
T Consensus 63 ~~~~~~~-~~~iPILGIC 79 (192)
T PRK08857 63 LQAIEHF-AGKLPILGVC 79 (192)
T ss_pred HHHHHHH-CCCCCEEEEC
T ss_conf 4669973-5799989987
No 375
>PRK07310 consensus
Probab=50.54 E-value=13 Score=17.24 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=16.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 999996289899999999998525
Q gi|254780206|r 375 LSATALGKTITESRELAYHMVENI 398 (424)
Q Consensus 375 L~vv~~g~~l~eA~~~ay~~i~~I 398 (424)
+++...-+++++|.++.-+.+++-
T Consensus 370 l~~a~~~~~l~eal~RL~~~l~s~ 393 (395)
T PRK07310 370 LSYATDLETLKEAVRRLHVFMESN 393 (395)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHC
T ss_conf 998099999999999999999877
No 376
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=50.42 E-value=18 Score=16.18 Aligned_cols=62 Identities=21% Similarity=0.402 Sum_probs=32.3
Q ss_pred CCCCCCCC--CEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEECCCCEEEEEEECCCHHHHHHH
Q ss_conf 21234444--2067542254-46687757976248766689868998335877887998188079999962898999999
Q gi|254780206|r 314 THINWKAE--YALTVVVATK-GYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESREL 390 (424)
Q Consensus 314 ~~~~~~~~--~~v~Vvlas~-GYP~~~~kg~~I~~l~~~~~~~~ifhagt~~~~g~l~t~GGRVL~vv~~g~~l~eA~~~ 390 (424)
.++.|+++ |..+.|.+.. || .-|.++.+ .++ ..||||+.|-. ..+++++.+.
T Consensus 176 AELC~SDDP~YtTGYVA~~~~GY-------~RI~~lK~-~G~----------------~~GGRvffv~~-~~d~~~~i~y 230 (243)
T PRK01322 176 AELCWSDDPDYTTGYVATKKLGY-------FRITNLKE-KGT----------------EYGGRIFFVDD-SIDLEELISF 230 (243)
T ss_pred EEEEECCCCCCEEEEEEECCCCE-------EECCCCCC-CCC----------------CCCCEEEEEEC-CCCHHHHHHH
T ss_conf 99995379997037998288775-------96745300-379----------------88778999948-9999999999
Q ss_pred HHHHHHCCCC
Q ss_conf 9999852589
Q gi|254780206|r 391 AYHMVENIDW 400 (424)
Q Consensus 391 ay~~i~~I~~ 400 (424)
-.+.--.|.|
T Consensus 231 Le~~pVLI~~ 240 (243)
T PRK01322 231 LENKPVLVVY 240 (243)
T ss_pred HHCCCEEEEE
T ss_conf 8248689998
No 377
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=50.24 E-value=18 Score=16.16 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=38.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCHHHHH-CCEEEECCC-CCHHHHHHHHHHHCCCEEEEC
Q ss_conf 95899886588999999998589-9678999549835751-170551287-898999999987189799997
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSP-LLSELWSIPGNPGIAQ-HAQCVAIDI-QNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~-~~~~v~~~pgN~g~~~-~~~~~~i~~-~d~~~i~~~a~~~~iDlvivg 69 (424)
|||++||.|-=-.||+..|.++. ...++++..-|+.... +.+...+.. .|..++ + .+-|+||.+
T Consensus 3 ~kI~~IG~G~Mg~Aii~gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~v~~~~~~~~~---~--~~~diIiLa 69 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEA---A--QEADVVVLA 69 (267)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCEEECCHHHH---H--HCCCEEEEE
T ss_conf 879998668999999999997798945289977999999999997396785786988---7--219999997
No 378
>KOG1201 consensus
Probab=50.23 E-value=18 Score=16.16 Aligned_cols=59 Identities=29% Similarity=0.486 Sum_probs=35.4
Q ss_pred EEEEECCC---HHHHHHHHHHHHCCCCCEEEEEC--CCHHHHHC------CEEEECCCCCHHHHHHHHHHHC
Q ss_conf 58998865---88999999998589967899954--98357511------7055128789899999998718
Q gi|254780206|r 2 RVLLIGSG---GREHALAWKIAQSPLLSELWSIP--GNPGIAQH------AQCVAIDIQNHSAIIHFCQEKH 62 (424)
Q Consensus 2 kILviGsG---grEhAl~~~l~~s~~~~~v~~~p--gN~g~~~~------~~~~~i~~~d~~~i~~~a~~~~ 62 (424)
.|||-|+| ||+ +|.-+.+-...--+|-.+ +|..|... +..+..|++|.+++.+.+++.+
T Consensus 40 ~vLITGgg~GlGr~--ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201 40 IVLITGGGSGLGRL--IALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred EEEEECCCCHHHHH--HHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 89996898607899--99999970784899955651239999999844852589955898899999999999
No 379
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=50.11 E-value=18 Score=16.15 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=38.1
Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 899886588-999999998589967899954983575117055128789899999998718979999
Q gi|254780206|r 3 VLLIGSGGR-EHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 3 ILviGsGgr-EhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
|||.|+-|. -..|+..|.+... +|++.. . ...|..|.+.+.++.++.++|.||-
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~g~--~v~~~~-r---------~~~D~~d~~~l~~~~~~~~pd~Vih 55 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAERGV--EVVALD-R---------PELDLTDPEAVAALVREARPDVVVN 55 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC--EEEEEC-C---------CCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 69964899899999999986899--899954-8---------6257889999999998649979997
No 380
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=50.06 E-value=18 Score=16.14 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=45.9
Q ss_pred EECCC-----HHHHHHHHHHHHCC---CCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHH--H
Q ss_conf 98865-----88999999998589---96789995498357511705512878989999999871897999979557--8
Q gi|254780206|r 5 LIGSG-----GREHALAWKIAQSP---LLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELP--L 74 (424)
Q Consensus 5 viGsG-----grEhAl~~~l~~s~---~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~p--L 74 (424)
|||.| |+.||=+.||.+.. .-..+||. +-.|...- ...-=.+...+.+|.-||+|..+| .
T Consensus 37 iig~G~h~~~G~~HAEv~Al~~a~~~~~gatlYVT--------LEPC~H~G--kTpPC~~aIi~agI~rVvia~~DPnp~ 106 (367)
T PRK10786 37 IVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVT--------LEPCSHHG--RTPPCCDALIAAGVARVVAAMQDPNPQ 106 (367)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEE--------ECCCCCCC--CCCHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 99999578899989999999971343149769998--------35734679--894599999982898899968898821
Q ss_pred HHH-HHHHHHHCCCCEE
Q ss_conf 748-9989860588067
Q gi|254780206|r 75 VNG-ISDALNAAGFKVF 90 (424)
Q Consensus 75 ~~g-i~d~l~~~gi~v~ 90 (424)
++| =...|+++||.|.
T Consensus 107 v~GkGi~~L~~aGI~V~ 123 (367)
T PRK10786 107 VAGRGLYRLQQAGIDVS 123 (367)
T ss_pred CCCCHHHHHHHCCCEEE
T ss_conf 24636999987698899
No 381
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=49.91 E-value=18 Score=16.13 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 5899886588999999998589967899954
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP 32 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p 32 (424)
||||+|-||--..++.-|.++. +.++..+.
T Consensus 1 kV~IvG~GGLG~~~a~~La~aG-vg~i~lvD 30 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVD 30 (174)
T ss_pred CEEEECCCHHHHHHHHHHHHHC-CCEEEEEE
T ss_conf 9899876788999999999818-97399998
No 382
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=49.84 E-value=18 Score=16.12 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=42.7
Q ss_pred EEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHH--CCCEEE
Q ss_conf 58998865-8899999999858996789995498357511705512878989999999871--897999
Q gi|254780206|r 2 RVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEK--HIDLVV 67 (424)
Q Consensus 2 kILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~--~iDlvi 67 (424)
.+||-|++ |--.|++..|.+... +|++..-|.-.......+..|..|.+.+.+++.+. ++|..+
T Consensus 7 ~alVTG~s~GIG~aia~~la~~GA--~V~~~d~~~~~~~~~~~~~~D~~~~~~v~~~v~~~~g~id~lv 73 (261)
T PRK12428 7 TIVVTGVASGIGAEVARLLRFLGA--RVIGLDRRPPGMTLDGFHQADLGDPASIDAAVAALPGRIDALF 73 (261)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 899978577999999999998699--9999968855456131767378999999999998379887899
No 383
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=49.79 E-value=18 Score=16.11 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=23.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 5899886588999999998589967899954
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP 32 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p 32 (424)
+|||+|-||=-..+++-|..+. +.++.++.
T Consensus 29 ~VlivG~GGLG~~~a~~La~aG-VG~i~lvD 58 (209)
T PRK08644 29 KVGIAGAGGLGSNIAVALARSG-VGNLKLVD 58 (209)
T ss_pred CEEEECCCHHHHHHHHHHHHHC-CCEEEEEE
T ss_conf 6899888788999999999938-98189988
No 384
>pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Probab=49.75 E-value=18 Score=16.11 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=49.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHH---HHHHHHCCCC--CCCCCCHHHHHHHHCCC
Q ss_conf 979999795578748998986058806701066655520102357888---7653101111--22344011111210124
Q gi|254780206|r 63 IDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC---TKYGIPTATY--QHFSDPMKAKQYVQNKS 137 (424)
Q Consensus 63 iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l---~~~gIPt~~~--~~~~~~~ea~~~~~~~g 137 (424)
+-.|+.+-.+|..+|+++.+...|-.+.|-+-. .-++..=.++|+++ ++.|+..-.. ......+++++++++.|
T Consensus 81 iPIVf~~v~dPv~aglv~s~~~pg~NvTGvs~~-~~~~~~l~ll~~l~P~~k~igviyn~~e~~s~~~~~~~~~~a~~~g 159 (292)
T pfam04392 81 IPIVFAAVTDPVGAKLVPSKEQPGENVTGVSDL-VDVEQTIELIKKLLPNVKSIGVYYSPSEANSVSLVEEIKKYAKKSG 159 (292)
T ss_pred CCEEEEEECCHHHHCCCCCCCCCCCEEEEEECC-CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 998999726856606644566899826785277-4799999999986889858999957998657999999999999769
Q ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 202563046534300023235677888788751
Q gi|254780206|r 138 MPIVVKADGLCAGKGVVVAATVDEATSAIDRCF 170 (424)
Q Consensus 138 ~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~ 170 (424)
+-++..+. .+..|...++....
T Consensus 160 i~l~~~~v-----------~~~~ei~~a~~~l~ 181 (292)
T pfam04392 160 IKVVEASV-----------PSSNDVPSAMSSMA 181 (292)
T ss_pred CEEEEEEC-----------CCHHHHHHHHHHHH
T ss_conf 98999966-----------88667999999743
No 385
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=49.58 E-value=18 Score=16.09 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHH---HHHHHCCCCCCC
Q ss_conf 87898999999987189799997955787489989860588067010666555201023578887---653101111223
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCT---KYGIPTATYQHF 123 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~---~~gIPt~~~~~~ 123 (424)
...|-.+.++.++++.+|+++..-.-|-..|+- ++|.+-+ ...+|.---...
T Consensus 35 ~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~e-------------------------l~~~ir~~~~~~~~Pii~~T~~ 89 (129)
T PRK10610 35 EAEDGVDALNKLQAGGFGFVISDWNMPNMDGLE-------------------------LLKTIRADGAMSALPVLMVTAE 89 (129)
T ss_pred EECCHHHHHHHHHHCCCCEEEEECCCCCCCHHH-------------------------HHHHHHHCCCCCCCCEEEEECC
T ss_conf 989999999999858999999818999998999-------------------------9999985777789968999886
Q ss_pred CCCHHHHHHHHCCCC-EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 440111112101242-0256304653430002323567788878875144
Q gi|254780206|r 124 SDPMKAKQYVQNKSM-PIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ 172 (424)
Q Consensus 124 ~~~~ea~~~~~~~g~-PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~ 172 (424)
.+.+...++.+ .|. -++.||- +.+++.+.+.+.++.
T Consensus 90 ~~~~~~~~a~~-~Ga~~yl~KP~------------~~~~L~~~i~~vl~r 126 (129)
T PRK10610 90 AKKENIIAAAQ-AGASGYVVKPF------------TAATLEEKLNKIFEK 126 (129)
T ss_pred CCHHHHHHHHH-CCCCEEEECCC------------CHHHHHHHHHHHHHH
T ss_conf 89999999998-69988998989------------999999999999976
No 386
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=49.58 E-value=18 Score=16.09 Aligned_cols=93 Identities=13% Similarity=0.216 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCE--EEEEECCCC
Q ss_conf 557874899898605880670106665552010235788876531011112234401111121012420--256304653
Q gi|254780206|r 71 ELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP--IVVKADGLC 148 (424)
Q Consensus 71 E~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~P--vVVKp~~~a 148 (424)
|.|....+.+.+...|+.++|-+.+ .++...++++++++++-|-. ++...++.....-.+.| ++|-++|--
T Consensus 80 E~P~L~~l~~~~~~~~v~vi~i~~d-----~~~~~v~~f~~~~~~~~pv~--~D~~~~~~~~~~v~~~P~t~lId~~G~I 152 (176)
T PRK03147 80 EMPYMNELYPKYKEKGVEIIAVNVD-----ETDIAVKNFVNQYGLKFPVA--IDKGRQVIDAYGVGPLPTTFLIDKDGKV 152 (176)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC-----CCHHHHHHHHHHCCCCCEEE--ECCCCHHHHHCCCCCCCEEEEECCCCEE
T ss_conf 7155999999853064478522078-----87888988898709962289--8797358987699988869999799979
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 43000232356778887887514
Q gi|254780206|r 149 AGKGVVVAATVDEATSAIDRCFQ 171 (424)
Q Consensus 149 gGkGV~i~~~~~e~~~~~~~~~~ 171 (424)
-.+=+. .-+.+++++.++++..
T Consensus 153 ~~~~~G-~i~~~~l~~~i~~lk~ 174 (176)
T PRK03147 153 VKVITG-EMTEEMLEEYLNKIKP 174 (176)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHC
T ss_conf 999978-9999999999998744
No 387
>KOG3974 consensus
Probab=49.46 E-value=18 Score=16.08 Aligned_cols=71 Identities=27% Similarity=0.361 Sum_probs=31.5
Q ss_pred HHHHHHHCCCEEEE-CCCHHHHHHHHH-HHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 99998718979999-795578748998-9860588067010666555201023578887653101111223440111112
Q gi|254780206|r 55 IHFCQEKHIDLVVV-GPELPLVNGISD-ALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQY 132 (424)
Q Consensus 55 ~~~a~~~~iDlviv-gpE~pL~~gi~d-~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~ 132 (424)
...++...+|++|- .-..+-...+.+ .|.....-|+||. |-+|-...| +..+..+|
T Consensus 70 a~vIKsYsPdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-----LGRdp~~~k-----------------~i~~iley 127 (306)
T KOG3974 70 AVVIKSYSPDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-----LGRDPAILK-----------------EIAKILEY 127 (306)
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHEEEEEECCC-----CCCCHHHHH-----------------HHHHHHHH
T ss_conf 77876429750641342577637678987743538997798-----889878999-----------------99999999
Q ss_pred HHCCCCEEEEEECCC
Q ss_conf 101242025630465
Q gi|254780206|r 133 VQNKSMPIVVKADGL 147 (424)
Q Consensus 133 ~~~~g~PvVVKp~~~ 147 (424)
+..-+.|+||-+||+
T Consensus 128 ~~~~dvP~VIDaDGL 142 (306)
T KOG3974 128 LRGKDVPLVIDADGL 142 (306)
T ss_pred HHCCCCCEEECCCCE
T ss_conf 864898679807736
No 388
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=49.41 E-value=19 Score=16.07 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 5899886588999999998589967899954
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIP 32 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~p 32 (424)
||||+|.||----+++-|..++ +.++.+..
T Consensus 1 KVlvvGaGglGce~~k~La~~G-vg~i~iiD 30 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVID 30 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 9899948887999999999839-98699975
No 389
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=49.31 E-value=6.9 Score=19.19 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=7.0
Q ss_pred HHHHHHHHHHCCCE
Q ss_conf 89999986204623
Q gi|254780206|r 245 ILPTIEGMQKEQNP 258 (424)
Q Consensus 245 ~~~~~~~l~~~~~~ 258 (424)
+....+.|++.|.+
T Consensus 323 v~el~~~L~~~g~~ 336 (459)
T PRK09444 323 VAEITEKLRARGIN 336 (459)
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999977985
No 390
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=49.08 E-value=19 Score=16.04 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=32.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEE-CCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 589988658899999999858996789995-4983575117055128789899999998718979999
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSI-PGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~-pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
||.|||.|..-||=|.-|+.|.. .|.+. ..+......++.--+...++++..++ -|++++
T Consensus 6 ~iaViGYGsQG~AhAlNLrDSG~--~V~vglr~~s~S~~kA~~dGf~v~~~~eA~~~-----aDiim~ 66 (165)
T pfam07991 6 KIAVIGYGSQGHAHALNLRDSGV--NVIVGLRPGSKSWEKAKKDGFEVYTVAEAVKK-----ADVVMI 66 (165)
T ss_pred EEEEEEECCHHHHHHHHHHHCCC--CEEEEECCCCHHHHHHHHCCCCCCCHHHHHHH-----CCEEEE
T ss_conf 89999346164888723053499--78999789986799999789700489999865-----789998
No 391
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=49.05 E-value=19 Score=16.03 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=84.7
Q ss_pred HH--HHHHHHHCCCCCEEEEECCCHH------HHHC-CEEEECCCCCHHHHHHHHHHH----------------------
Q ss_conf 99--9999985899678999549835------7511-705512878989999999871----------------------
Q gi|254780206|r 13 HA--LAWKIAQSPLLSELWSIPGNPG------IAQH-AQCVAIDIQNHSAIIHFCQEK---------------------- 61 (424)
Q Consensus 13 hA--l~~~l~~s~~~~~v~~~pgN~g------~~~~-~~~~~i~~~d~~~i~~~a~~~---------------------- 61 (424)
|| .|.+-+.+. ++.+.|+|.-.- |... +| +.+.=.|+|+--++|.+.
T Consensus 59 HAQGVA~AA~~~G-i~a~IVMPE~aP~~Kv~AT~~yGAE-ViL~G~~~DEA~~~A~~~~~~~g~~fvHpF~D~~vmAGQG 136 (381)
T TIGR01127 59 HAQGVALAAKVFG-IKAKIVMPEYAPLSKVKATKSYGAE-VILHGADYDEAYALAEELAEEEGRVFVHPFDDEYVMAGQG 136 (381)
T ss_pred HHHHHHHHHHHCC-CCCEEECCCCCHHHHHHHHHHCCCE-EEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCC
T ss_conf 3789999987618-7746878876735789997626961-8980887078999999999860987874058877861674
Q ss_pred -----------CCCEEEE--CCCHHHHHHHHHHHHHC--CCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -----------8979999--79557874899898605--88067010666555201023578887653101111223440
Q gi|254780206|r 62 -----------HIDLVVV--GPELPLVNGISDALNAA--GFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDP 126 (424)
Q Consensus 62 -----------~iDlviv--gpE~pL~~gi~d~l~~~--gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~ 126 (424)
.+|.||+ |-= =|..|++-.++.. +++|+|-.++.+- .+ .+=|++=.+-... ...+.
T Consensus 137 TigLEi~ed~pd~D~viVPVGGG-GLISGv~~a~K~~~P~VkvIGV~aE~ap-----~m-~~Sl~~Gk~~~v~--~~~ti 207 (381)
T TIGR01127 137 TIGLEIMEDLPDVDTVIVPVGGG-GLISGVASAAKKLNPEVKVIGVEAEGAP-----SM-VESLREGKIKAVE--SVDTI 207 (381)
T ss_pred HHHHHHHHCCCCCCEEEEEECCC-CHHHHHHHHHHHHCCCCEEEEEECCCCH-----HH-HHHHHCCCEEEEC--CCCEE
T ss_conf 89999996479813799841787-1287999999872899479986027855-----89-9998519905604--56414
Q ss_pred HHH--HHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-------C---HHHHHHHHHH
Q ss_conf 111--11210124202563046534300023235677888788751445-------3---1777887752
Q gi|254780206|r 127 MKA--KQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-------N---STVIIEEYLE 184 (424)
Q Consensus 127 ~ea--~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-------~---~~VliEefl~ 184 (424)
.|- -+....+.||+|-+-.+- .|.=|.+|.-.|+-..|+.. + =..|+|+-++
T Consensus 208 ADGIaVk~pG~lTF~i~k~~VD~------~V~V~eeEIA~A~~~LLEr~Ki~aEGAGA~gvAA~L~~K~~ 271 (381)
T TIGR01127 208 ADGIAVKKPGDLTFNIVKEYVDE------VVAVDEEEIAKAILLLLERAKIVAEGAGAVGVAAVLEDKVD 271 (381)
T ss_pred ECCCEECCCCCCCHHHHHHHCCC------EEEECHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCC
T ss_conf 15211637887674789974797------08847377999999986077478827458999999975403
No 392
>PRK13289 nitric oxide dioxygenase; Provisional
Probab=48.99 E-value=19 Score=16.03 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=6.5
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 87898999999987
Q gi|254780206|r 47 DIQNHSAIIHFCQE 60 (424)
Q Consensus 47 ~~~d~~~i~~~a~~ 60 (424)
++.|.+.+..+.++
T Consensus 67 ~id~~~~l~~~~~~ 80 (399)
T PRK13289 67 NIDNLEALLPAVER 80 (399)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 47887787999999
No 393
>PRK05670 anthranilate synthase component II; Provisional
Probab=48.91 E-value=19 Score=16.02 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=41.6
Q ss_pred EEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCHHHHHHH
Q ss_conf 58998865-88999999998589967899954983575117055128789899999998718979999--7955787489
Q gi|254780206|r 2 RVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPELPLVNGI 78 (424)
Q Consensus 2 kILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~pL~~gi 78 (424)
.||||-++ ...|-|+..|++-.. .+.+.|. +..+.+.+ +..++|.+|. ||-.|-.++.
T Consensus 1 miLiiD~~dsfT~nI~~~lr~~g~--~v~V~~~-------------d~~~~~~i----~~~~pdgiiLS~GPg~P~~~~~ 61 (192)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGA--EVVVYRN-------------DEITLEEI----EALAPDAIVLSPGPGTPAEAGI 61 (192)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCC--EEEEEEC-------------CCCCHHHH----HHCCCCEEEECCCCCCHHHCCC
T ss_conf 999996898689999999986899--6999989-------------98999999----8509898999999999366055
Q ss_pred ----HHHHHHCCCCEEECC
Q ss_conf ----989860588067010
Q gi|254780206|r 79 ----SDALNAAGFKVFGPS 93 (424)
Q Consensus 79 ----~d~l~~~gi~v~Gp~ 93 (424)
...+ ..++|++|=.
T Consensus 62 ~~~~i~~~-~~~iPiLGIC 79 (192)
T PRK05670 62 SLELIREF-AGKVPILGVC 79 (192)
T ss_pred HHHHHHHH-CCCCCEEEEE
T ss_conf 49999973-4699789984
No 394
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=48.80 E-value=19 Score=16.01 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=35.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECC-CHHHHHCCEE-----EECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 58998865889999999985899678999549-8357511705-----5128789899999998718979999
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPG-NPGIAQHAQC-----VAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pg-N~g~~~~~~~-----~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
+|||||-||---.++.-|..+. +-++-++.+ .-....+... -.+-....+...+.+++.+++..|.
T Consensus 30 ~VlvvG~GGLG~~~~~yLa~aG-vG~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i~i~ 101 (355)
T PRK05597 30 KVSVIGAGGLGSPALLYLAGAG-VGHITIIDDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDVKVT 101 (355)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 6899877766899999999849-97599972999261213377565412179797999999999878997427
No 395
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=48.77 E-value=19 Score=16.01 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=61.9
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCH-------HHHHHHHHHHCCCEEEECCC
Q ss_conf 958998865--889999999985899678999549835751170551287898-------99999998718979999795
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNH-------SAIIHFCQEKHIDLVVVGPE 71 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~-------~~i~~~a~~~~iDlvivgpE 71 (424)
|+|+|.-|| |-- -+-...++-|...-+|++. |.. .+--.... -++++|..++.++++|+.--
T Consensus 6 ~~IgvFDSGVGGLs-Vlrei~~~LP~e~~iY~~D-~a~-------~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACN 76 (269)
T COG0796 6 PPIGVFDSGVGGLS-VLREIRRQLPDEDIIYVGD-TAR-------FPYGEKSEEEIRERTLEIVDFLLERGIKALVIACN 76 (269)
T ss_pred CEEEEEECCCCHHH-HHHHHHHHCCCCCEEEEEC-CCC-------CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 81899978987089-9999999789986899814-778-------99998999999999999999999729988999665
Q ss_pred HHHHHHHHHHHHH-CCCCEEE--CCHHHH-HHHHCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHCCCCEEEEEEC
Q ss_conf 5787489989860-5880670--106665-5520102357888765310-11112234401111121012420256304
Q gi|254780206|r 72 LPLVNGISDALNA-AGFKVFG--PSQRAA-KLESSKSFAKKFCTKYGIP-TATYQHFSDPMKAKQYVQNKSMPIVVKAD 145 (424)
Q Consensus 72 ~pL~~gi~d~l~~-~gi~v~G--p~~~aa-~le~sK~~~K~~l~~~gIP-t~~~~~~~~~~ea~~~~~~~g~PvVVKp~ 145 (424)
..=+. .-+.|++ -.+||+| |..++| +...+| +-|+= |+. ++.+. --.+.++++.-.+.|+.-
T Consensus 77 TASa~-al~~LR~~~~iPVvGviPaik~A~~~t~~~--------~IgViaT~~--Tvks~-~y~~~i~~~~~~~~V~~l 143 (269)
T COG0796 77 TASAV-ALEDLREKFDIPVVGVIPAIKPAVALTRNG--------RIGVIATPA--TVKSN-AYRDLIARFAPDCEVESL 143 (269)
T ss_pred HHHHH-HHHHHHHHCCCCEEEECCCHHHHHHHCCCC--------EEEEEECCC--HHHHH-HHHHHHHHHCCCCEEEEE
T ss_conf 17899-999999867999899531549999731387--------589995511--24018-999999985899879970
No 396
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=48.68 E-value=19 Score=16.00 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=19.3
Q ss_pred HHHHHHHHHHC----CCCCCCCCCHHHHHHHHCC
Q ss_conf 78887653101----1112234401111121012
Q gi|254780206|r 107 KKFCTKYGIPT----ATYQHFSDPMKAKQYVQNK 136 (424)
Q Consensus 107 K~~l~~~gIPt----~~~~~~~~~~ea~~~~~~~ 136 (424)
.++++++|.+. +.+...-+.++..+++++.
T Consensus 96 ~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~ 129 (383)
T COG0075 96 AEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD 129 (383)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 9999982996699847888879999999998528
No 397
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=48.65 E-value=19 Score=15.99 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=40.7
Q ss_pred CEEEEEC----------CCHHHH---HHHHHHHHCCCCCEEEEECCCHHHH-HC----CEEEEC--------CCCCHHHH
Q ss_conf 9589988----------658899---9999998589967899954983575-11----705512--------87898999
Q gi|254780206|r 1 MRVLLIG----------SGGREH---ALAWKIAQSPLLSELWSIPGNPGIA-QH----AQCVAI--------DIQNHSAI 54 (424)
Q Consensus 1 MkILviG----------sGgrEh---Al~~~l~~s~~~~~v~~~pgN~g~~-~~----~~~~~i--------~~~d~~~i 54 (424)
||||+|. -||-|. .|+..|.+.+.-..|++ +++.... .. ...... ...-...+
T Consensus 1 MkI~~v~~~~~p~pP~~~GG~e~~~~~La~~L~~~Gh~V~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFA-SGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALA 79 (335)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9869988840036999989799999999999997699899996-289877885004567665445442212456899999
Q ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 999987189799997955787489989860588067
Q gi|254780206|r 55 IHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVF 90 (424)
Q Consensus 55 ~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~ 90 (424)
..+.+..++|++..-...++ .-.....++|++
T Consensus 80 ~~~~~~~~~Dvvh~~~~~~~----~~~~~~~~~p~v 111 (335)
T cd03802 80 ERALAAGDFDIVHNHSLHLP----LPFARPLPVPVV 111 (335)
T ss_pred HHHHHHCCCCEEEECCCHHH----HHHHHHCCCCEE
T ss_conf 99997579858998971789----999862799789
No 398
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=48.64 E-value=15 Score=16.65 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=47.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEEC--CCCCHHHHHHHHHHH---CCC--EEEEC--CCHH
Q ss_conf 89988658899999999858996789995498357511705512--878989999999871---897--99997--9557
Q gi|254780206|r 3 VLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAI--DIQNHSAIIHFCQEK---HID--LVVVG--PELP 73 (424)
Q Consensus 3 ILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i--~~~d~~~i~~~a~~~---~iD--lvivg--pE~p 73 (424)
-||||+---.| |.||..-.-+|.-|- -+|+.+-+. ++ -..+.+++.+.|.+. ..| ++++| |.+-
T Consensus 40 FLVVGsrTCah-----llQsA~GVMIFAEPR-fatAiLEE~-Dlag~ad~~~EL~Rvv~qi~~~R~~~~i~~vGSCpsEV 112 (457)
T CHL00073 40 FLVVGTKTCGY-----FLQNALGVMIFAEPR-YAMAELEEG-DISAQLNDYEELKRLCLQIKKDRNPSVIVWIGTCTTEI 112 (457)
T ss_pred EEEEECCHHHH-----HHHHHCCCEEEECCC-CCEEECCCC-HHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 47752421787-----876402538970465-111232432-12125773688999999998408980799962686687
Q ss_pred H---HHHHHHHHHHC-CCCEEECCHHHHHHHH
Q ss_conf 8---74899898605-8806701066655520
Q gi|254780206|r 74 L---VNGISDALNAA-GFKVFGPSQRAAKLES 101 (424)
Q Consensus 74 L---~~gi~d~l~~~-gi~v~Gp~~~aa~le~ 101 (424)
+ -+|++..|+.. ++||+ ...++-||.
T Consensus 113 IKlDL~~~A~rL~~~~~v~Vl--~~sgsGiet 142 (457)
T CHL00073 113 IKMDLEGMAPRLEAEIGIPIV--VARANGLDY 142 (457)
T ss_pred HHHHHHHHHHHHHHCCCCEEE--EECCCCCCC
T ss_conf 333087777875013585389--851787543
No 399
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=48.55 E-value=19 Score=15.98 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=56.1
Q ss_pred CEEEEECCCHHHH-HHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHH
Q ss_conf 9589988658899-999999858996789995498357511705512878989999999871897999979557874899
Q gi|254780206|r 1 MRVLLIGSGGREH-ALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGIS 79 (424)
Q Consensus 1 MkILviGsGgrEh-Al~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~ 79 (424)
||||||-.--.-- .+..-|.+.+....|+. ..+..+-.++.+++++|+++.--.-|=..|+
T Consensus 5 i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~-----------------A~~~~eA~~~l~~~~pDLvLLDi~LPd~~Gl- 66 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILL-----------------AGNLAQARMMIERFKPGLILLDNYLPDGRGI- 66 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEE-----------------ECCHHHHHHHHHHCCCCEEEEECCCCCCCHH-
T ss_conf 8699995989999999999972899549999-----------------8999999999973599999982898999799-
Q ss_pred HHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 8986058806701066655520102357888765310111--12234401111121012420256304653430002323
Q gi|254780206|r 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTAT--YQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAA 157 (424)
Q Consensus 80 d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~--~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~ 157 (424)
.+.+++ .+.+.+++- -..+++.+.+.++++.=-+-+++||-
T Consensus 67 ------------------------ell~~l-r~~~~~~~VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf------------ 109 (225)
T PRK10046 67 ------------------------NLLHEL-VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPI------------ 109 (225)
T ss_pred ------------------------HHHHHH-HHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEECCC------------
T ss_conf ------------------------999999-9648799889996899999999999749983102899------------
Q ss_pred HHHHHHHHHHHH
Q ss_conf 567788878875
Q gi|254780206|r 158 TVDEATSAIDRC 169 (424)
Q Consensus 158 ~~~e~~~~~~~~ 169 (424)
+.+++.+++++.
T Consensus 110 ~~erl~~~L~~y 121 (225)
T PRK10046 110 AYERLGQTLTRF 121 (225)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999999
No 400
>KOG2156 consensus
Probab=48.49 E-value=18 Score=16.20 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=39.0
Q ss_pred CCCCCCCCHHHHHHHHCC-CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 112234401111121012-42025630465343000232356778887887514453177788775205
Q gi|254780206|r 119 TYQHFSDPMKAKQYVQNK-SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGF 186 (424)
Q Consensus 119 ~~~~~~~~~ea~~~~~~~-g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~ 186 (424)
.|..=.+.++++++.++- ..-++|||-..|-|-|+.+.....+. -...+.++++||+-+
T Consensus 286 tyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~---------pk~rpLvvQ~yieRP 345 (662)
T KOG2156 286 TYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQF---------PKDRPLVVQKYIERP 345 (662)
T ss_pred EEECCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEECCCHHHC---------CCCCCHHHHHHHHCC
T ss_conf 335640099999987647442077558600267635742536448---------876648999976343
No 401
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=48.29 E-value=15 Score=16.84 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=7.0
Q ss_pred EEEEECCE-EEEEEEEE
Q ss_conf 48985570-48999886
Q gi|254780206|r 266 GLMITEQG-PYLIEYNV 281 (424)
Q Consensus 266 ~~m~t~~g-p~viE~N~ 281 (424)
-|++..+| .+.+.+|.
T Consensus 130 ~FIIDp~giIr~~~v~~ 146 (199)
T PTZ00253 130 LFIIDPKGMLRQITVND 146 (199)
T ss_pred EEEECCCCEEEEEEECC
T ss_conf 99988998499999779
No 402
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=48.19 E-value=9 Score=18.32 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=81.2
Q ss_pred CC-CCHHHHHHHHHHHHHHHCCC-CHHHHHHH-HH------HCCCCCEEEECCCC----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00-23235677888788751445-31777887-75------20575234421577----631035200011135665444
Q gi|254780206|r 152 GV-VVAATVDEATSAIDRCFQQI-NSTVIIEE-YL------EGFEVSFFALCDGK----TAIPFTTARDHKRIHDGDIGP 218 (424)
Q Consensus 152 GV-~i~~~~~e~~~~~~~~~~~~-~~~VliEe-fl------~G~E~Sv~~i~dG~----~~~~l~~~~dyKr~~~~d~Gp 218 (424)
|. +-.+-.+|+..|+...|.++ +.+.++=. -+ -|.=++++..+-|+ +-.=...+|| |
T Consensus 199 G~~FPqDP~eQL~~Ai~AVF~SW~n~RA~~YRr~~n~Ip~~~GTAVNiQ~MVFGN~G~dSgTGV~FTRn----------P 268 (920)
T TIGR01828 199 GKDFPQDPKEQLELAIKAVFDSWNNPRAVVYRRRLNDIPEDLGTAVNIQSMVFGNMGEDSGTGVAFTRN----------P 268 (920)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECC----------C
T ss_conf 898773318999999999831568730788867632584103871578752206788887441467528----------7
Q ss_pred CCCCCC-EE-----------------ECCCCCCCCC---------C---EEEECCHHHHHHHHHHH-CCCEEEEEEEEEE
Q ss_conf 443443-00-----------------0012344322---------2---01000008999998620-4623566445448
Q gi|254780206|r 219 NTGGMG-AC-----------------SPALGMSQEL---------Y---STVIQKIILPTIEGMQK-EQNPFQGVLFAGL 267 (424)
Q Consensus 219 nTGGMG-a~-----------------~p~~~~~~~~---------~---~~i~~~i~~~~~~~l~~-~~~~y~G~l~~~~ 267 (424)
+||-=+ -| ||-|.-.-.. . +..+-+..+-.+.-..+ |+ .|+-.--++|
T Consensus 269 ~TGEk~ylfGEfL~NAQGEDVVAGIRTP~~i~~~~~dareE~Gd~~~s~~~~mP~~Y~eL~~~~~~LE~-HYrDMqDIEF 347 (920)
T TIGR01828 269 STGEKKYLFGEFLINAQGEDVVAGIRTPEPISELKEDAREEMGDDENSMEADMPEVYKELLDIAEKLEG-HYRDMQDIEF 347 (920)
T ss_pred CCCCCCEEHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCEE
T ss_conf 887664034314202477525324338800665457767632788068987428999999999999874-4333076414
Q ss_pred EEECCEEEEEEEEEEECCCCCEEE----EECCCCCCH---HHHHHHHHCCCCC-CCCCCCCCCEE--EEEECCCCCCCC
Q ss_conf 985570489998865147751044----332654411---5666542013333-21234444206--754225446687
Q gi|254780206|r 268 MITEQGPYLIEYNVRFGDPECQAM----MMRLESDIL---EILNSCVHGNLHN-THINWKAEYAL--TVVVATKGYPEE 336 (424)
Q Consensus 268 m~t~~gp~viE~N~R~GDPE~q~i----lp~L~~dl~---~il~~~~~g~L~~-~~~~~~~~~~v--~Vvlas~GYP~~ 336 (424)
=|=++.-|+| -||=|=-.+.+- +-+.+..++ +.+..+-..+|++ ....|++.+.- .|+ .+|=|.|
T Consensus 348 TIE~gKLYmL--QTR~GKRTA~AA~rIAvDmv~Eg~It~eeA~~Rv~p~~ldQLLHp~f~~~~~~~~~vl--a~GLPAS 422 (920)
T TIGR01828 348 TIERGKLYML--QTRNGKRTAKAAVRIAVDMVKEGLITKEEAIMRVEPESLDQLLHPRFDPSAKEAGEVL--AKGLPAS 422 (920)
T ss_pred EEECCCEEEE--ECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHCCCCE--EECCCCC
T ss_conf 7652750133--3555223558899999998735887757864215747875650788780445218710--1046887
No 403
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=48.09 E-value=19 Score=15.93 Aligned_cols=46 Identities=17% Similarity=0.389 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHCCCCCCC-CCCH--HHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 3578887653101111223-4401--111121012420256304653430
Q gi|254780206|r 105 FAKKFCTKYGIPTATYQHF-SDPM--KAKQYVQNKSMPIVVKADGLCAGK 151 (424)
Q Consensus 105 ~~K~~l~~~gIPt~~~~~~-~~~~--ea~~~~~~~g~PvVVKp~~~agGk 151 (424)
..|+.|+++|.-..+..++ ++.+ .+...+++.+++...=|+. -|||
T Consensus 155 ~~r~~l~~~g~~~~~h~vaiT~~~~~~l~~~a~~~g~~~f~ipd~-VGGR 203 (454)
T PRK00973 155 IVRGLLEKYGLDPKKHLVFTTDPEKGELKKIAEEEGYKTLEIPEN-VGGR 203 (454)
T ss_pred HHHHHHHHCCCCHHHCEEEECCCCCCHHHHHHHHCCEEEECCCCC-CCCH
T ss_conf 999999964956765657752675115677788749107248999-7636
No 404
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=47.89 E-value=19 Score=15.91 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=7.1
Q ss_pred CEEEEEEEEEEECC
Q ss_conf 70489998865147
Q gi|254780206|r 272 QGPYLIEYNVRFGD 285 (424)
Q Consensus 272 ~gp~viE~N~R~GD 285 (424)
.|-+|||+-|=-|.
T Consensus 73 ~g~~VLeIGtGsGY 86 (205)
T pfam01135 73 PGMRVLEIGSGSGY 86 (205)
T ss_pred CCCEEEEECCCCCH
T ss_conf 99989996699659
No 405
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=47.76 E-value=20 Score=15.90 Aligned_cols=96 Identities=22% Similarity=0.347 Sum_probs=52.2
Q ss_pred EEEEECCCHHH---------H----HH-----------HHHHHHCC-CCCEEEE---------ECCCHHHHHCCEEEECC
Q ss_conf 58998865889---------9----99-----------99998589-9678999---------54983575117055128
Q gi|254780206|r 2 RVLLIGSGGRE---------H----AL-----------AWKIAQSP-LLSELWS---------IPGNPGIAQHAQCVAID 47 (424)
Q Consensus 2 kILviGsGgrE---------h----Al-----------~~~l~~s~-~~~~v~~---------~pgN~g~~~~~~~~~i~ 47 (424)
||-|||-||-= | .+ +|+|..+. --.++.. |=|||..-+-+ -
T Consensus 19 kI~ViGvGGgGnN~v~rm~~~~p~l~~~g~~fiA~NTD~Q~L~~~~~A~~kilIG~~~TrGLGAGG~P~iG~~A-----A 93 (365)
T TIGR00065 19 KIKVIGVGGGGNNAVNRMVEEYPELGVEGVEFIAINTDAQHLKTTKYAPKKILIGKKLTRGLGAGGNPEIGRKA-----A 93 (365)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHH-----H
T ss_conf 89999855882358999987055322376269997483785411556241356157335567679983888999-----8
Q ss_pred CCCHHHHHHHHHHHCCCEEEE--C-------CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHH
Q ss_conf 789899999998718979999--7-------95578748998986058806701066655520102357
Q gi|254780206|r 48 IQNHSAIIHFCQEKHIDLVVV--G-------PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAK 107 (424)
Q Consensus 48 ~~d~~~i~~~a~~~~iDlviv--g-------pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K 107 (424)
.++.+++.+.. ..-|+||| | --+|-+ ++..++.|+-++|=--.=...|+.|...|
T Consensus 94 ees~d~i~~~l--~GaDmVFitAGmGGGTGTGAAPVv---A~~AK~~GaLTvavVT~PF~~EG~kr~~~ 157 (365)
T TIGR00065 94 EESRDEIRELL--EGADMVFITAGMGGGTGTGAAPVV---AKIAKELGALTVAVVTKPFKFEGKKRRKK 157 (365)
T ss_pred HHHHHHHHHHC--CCCCEEEEEECCCCCCCCCCHHHH---HHHHHHCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 98899999970--388818997258668666635789---99997579069998428741015899999
No 406
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=47.72 E-value=20 Score=15.89 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=18.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 9589988658899999999858996
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLL 25 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~ 25 (424)
|||+|||.|=---++|.+|.+...+
T Consensus 1 mkV~IVGaGiaGL~lA~~L~r~g~i 25 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHL 25 (414)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 9899999448999999999853999
No 407
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.64 E-value=20 Score=15.89 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999987189799997955787489989860588067
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVF 90 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~ 90 (424)
.+.++...+.++|.+|+.|.......+.+.+++.++|++
T Consensus 45 ~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~iPvV 83 (269)
T cd06281 45 LEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIV 83 (269)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEE
T ss_conf 999999985799899976777799999999984799889
No 408
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=47.64 E-value=12 Score=17.45 Aligned_cols=42 Identities=26% Similarity=0.566 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHCCCEEEE---CCCHHHHHH----HHHHHHHCCCCE
Q ss_conf 789899999998718979999---795578748----998986058806
Q gi|254780206|r 48 IQNHSAIIHFCQEKHIDLVVV---GPELPLVNG----ISDALNAAGFKV 89 (424)
Q Consensus 48 ~~d~~~i~~~a~~~~iDlviv---gpE~pL~~g----i~d~l~~~gi~v 89 (424)
+..+|.+.....-..||=++| |||.|+.+| +++.++++||.-
T Consensus 74 I~TVEHLmaAl~~lgIDN~~Iev~g~EiPImDGSa~~Fv~li~~aGi~~ 122 (300)
T COG0774 74 ISTVEHLMAALAGLGIDNLIIEVDGPEIPIMDGSAAPFVELIDEAGIKE 122 (300)
T ss_pred EEEHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 8539999999985798648999658867645786289999999718311
No 409
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=47.49 E-value=20 Score=15.87 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=16.8
Q ss_pred CCEEEECCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 887998188079999962898999999999985
Q gi|254780206|r 364 NNNLTANGGRVLSATALGKTITESRELAYHMVE 396 (424)
Q Consensus 364 ~g~l~t~GGRVL~vv~~g~~l~eA~~~ay~~i~ 396 (424)
|.-.++.++.++.+=+--.+.-+|.+.|-+..+
T Consensus 415 NAIv~ak~~~tvGiGaGQ~sRVda~~iA~~ka~ 447 (514)
T PRK00881 415 NAIVYAKDGQTVGIGAGQMSRVDSAKIALEKAG 447 (514)
T ss_pred CEEEEEECCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 569999489389867897568999999999988
No 410
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=47.48 E-value=20 Score=15.87 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=61.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH-----HC-------CEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 95899886588999999998589967899954983575-----11-------7055128789899999998718979999
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIA-----QH-------AQCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~-----~~-------~~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
+||-|||.|.---++|+.|...+.++++.+..-|+..+ .+ ..+......|.+.+ ..-|.||+
T Consensus 4 ~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~~~d~~~~------~~aDvVVi 77 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT------ANSKVVIV 77 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHH------CCCCEEEE
T ss_conf 869998978889999999996699887999938898332688886604012798559937999996------89999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHH---HHHHHHCCCCCCCCCCHHHHHHHH--CCCCE
Q ss_conf 795578748998986058806701066655520102357888---765310111122344011111210--12420
Q gi|254780206|r 69 GPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC---TKYGIPTATYQHFSDPMKAKQYVQ--NKSMP 139 (424)
Q Consensus 69 gpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l---~~~gIPt~~~~~~~~~~ea~~~~~--~~g~P 139 (424)
....|- +. |.+ +...++.+-...|++. .+++ |.+..-.++|.-++..++- ..|||
T Consensus 78 tAG~~~---------k~-----g~~-R~dLl~~N~~I~~~i~~~i~~~~-p~~ivivvsNPvDv~t~~~~k~sg~p 137 (312)
T cd05293 78 TAGARQ---------NE-----GES-RLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVSNPVDIMTYVAWKLSGLP 137 (312)
T ss_pred CCCCCC---------CC-----CCC-HHHHHHHHHHHHHHHHHHHHHCC-CCCEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 899999---------98-----988-89999988999999999988419-98469966891899999999962998
No 411
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=47.48 E-value=20 Score=15.87 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=38.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CCEEEEECCCHHHHH-CCEEEECC-CCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 958998865889999999985899--678999549835751-17055128-7898999999987189799997
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPL--LSELWSIPGNPGIAQ-HAQCVAID-IQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~--~~~v~~~pgN~g~~~-~~~~~~i~-~~d~~~i~~~a~~~~iDlvivg 69 (424)
|||.+||.|---.||+..|.+++. ...|++..-|+.... +.+...+. ..|.+.. + .+-|.+|.+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~---~--~~advv~La 69 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEA---V--EEADVVFLA 69 (266)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHH---H--HHCCEEEEE
T ss_conf 6589984688999999999966899802389837999999999998498556867988---7--408989998
No 412
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=47.46 E-value=20 Score=15.87 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=76.8
Q ss_pred HHHHH---HHHHCCCCCEEEEECCCHHH---HHC---CE-EEE-CCCCCHHHHHHHHHHHC---C--CEEEECCCHHHHH
Q ss_conf 99999---99858996789995498357---511---70-551-28789899999998718---9--7999979557874
Q gi|254780206|r 13 HALAW---KIAQSPLLSELWSIPGNPGI---AQH---AQ-CVA-IDIQNHSAIIHFCQEKH---I--DLVVVGPELPLVN 76 (424)
Q Consensus 13 hAl~~---~l~~s~~~~~v~~~pgN~g~---~~~---~~-~~~-i~~~d~~~i~~~a~~~~---i--DlvivgpE~pL~~ 76 (424)
|++.. ++..++.+.+|=.-|+ |. ..+ .+ +-. +++.+.+.|+..+-.+- + |-=++--|-||-
T Consensus 8 ~~lG~~i~~~LdD~~vvEIMLNpD--G~Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegELPld- 84 (315)
T TIGR02782 8 RALGPEIAAALDDPKVVEIMLNPD--GKLWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGELPLD- 84 (315)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCC--CHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCC-
T ss_conf 998999999737988389986698--70105006797300166117899999999998764460435786266107511-
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 89989860588067010666555201023578887653101111223440111112101242025630465343000232
Q gi|254780206|r 77 GISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVA 156 (424)
Q Consensus 77 gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~ 156 (424)
-+-..|+=.==||+--+..+.|.--.+.|+=+=.-++||=|+.= .+-+.+++.... -++| +||-|--
T Consensus 85 flGsRFeGl~PPVV~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ-----~d~l~~Av~ar~-NIlv-----~GGTGSG-- 151 (315)
T TIGR02782 85 FLGSRFEGLLPPVVEAPSFAIRKKAVRVFTLDDYVEAGIMTAAQ-----RDVLREAVAARK-NILV-----VGGTGSG-- 151 (315)
T ss_pred HHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHH-----HHHHHHHHHHCC-CEEE-----ECCCCCC--
T ss_conf 12011004687755655101110224104707776404455789-----999999997129-8899-----8145885--
Q ss_pred HHHHHHHHH-HHHHHC--CCCHH-HHHHHHHHCCCCCE
Q ss_conf 356778887-887514--45317-77887752057523
Q gi|254780206|r 157 ATVDEATSA-IDRCFQ--QINST-VIIEEYLEGFEVSF 190 (424)
Q Consensus 157 ~~~~e~~~~-~~~~~~--~~~~~-VliEefl~G~E~Sv 190 (424)
+.-+-+| +.++-. ..+++ ||||.= .|+-|
T Consensus 152 --KTTLaNAlla~I~~l~~P~dR~vIiEDT---~ElQC 184 (315)
T TIGR02782 152 --KTTLANALLAEIAKLNDPDDRVVIIEDT---AELQC 184 (315)
T ss_pred --HHHHHHHHHHHHHHCCCCCCEEEEEECC---HHHHH
T ss_conf --7999999999885216999618998547---13201
No 413
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit; InterPro: IPR005737 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram negative bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=47.42 E-value=20 Score=15.86 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=24.4
Q ss_pred HHHHHHHHHHC--CCCEEECCH---------HHHHHHHCCHH----HHHHHHHH--HHHCCCCCCCCC
Q ss_conf 74899898605--880670106---------66555201023----57888765--310111122344
Q gi|254780206|r 75 VNGISDALNAA--GFKVFGPSQ---------RAAKLESSKSF----AKKFCTKY--GIPTATYQHFSD 125 (424)
Q Consensus 75 ~~gi~d~l~~~--gi~v~Gp~~---------~aa~le~sK~~----~K~~l~~~--gIPt~~~~~~~~ 125 (424)
-.|+.|+|.+. +.+.+-+.. ...+++|-=.| +..|++.| -|||+.+-+..+
T Consensus 225 ~~GL~DYL~~~v~~~~~~~~~~F~G~~~~tvd~~~~~WAl~W~~~~~~~~~~SY~N~iPT~QGGTH~~ 292 (647)
T TIGR01055 225 EDGLKDYLSEAVNGLNTLPKKPFVGNFEGTVDDEAVEWALLWLPEGGELLMESYVNLIPTIQGGTHVN 292 (647)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHCCEEEEECCCCCHHHHHCCCCCCCCCCCCCHHH
T ss_conf 03313688876312322345530023211011110024466327884003204110157898871045
No 414
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=47.37 E-value=20 Score=15.86 Aligned_cols=97 Identities=20% Similarity=0.083 Sum_probs=40.0
Q ss_pred HHHHHHCCCCEEEEE-E-CCCCCCCCCCCH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
Q ss_conf 111210124202563-0-465343000232--356778887887514453177788775205752344215776310352
Q gi|254780206|r 129 AKQYVQNKSMPIVVK-A-DGLCAGKGVVVA--ATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTT 204 (424)
Q Consensus 129 a~~~~~~~g~PvVVK-p-~~~agGkGV~i~--~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~ 204 (424)
...+++.++...+|= . |..++-.|+.-. ..+.++.+..+-.|. .++-|.|.+-.-. -.+..+-+|-.+-.+..
T Consensus 113 ~~~~~~~l~~~~vVYdcvDd~~~~~~~~~~~~~~e~~l~~~ad~v~~--ts~~L~~~~~~~~-~~~~~i~nGvD~~~F~~ 189 (373)
T cd04950 113 TLPVAALLQASLVVYDCVDDLSAFPGGPPELLEAERRLLKRADLVFT--TSPSLYEAKRRLN-PNVVLVPNGVDYEHFAA 189 (373)
T ss_pred HHHHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHHHCCEEEE--CCHHHHHHHHHCC-CCEEEECCEECHHHHHH
T ss_conf 68898753788389995061221379868999999999997799998--5999999887469-99899888217888410
Q ss_pred CCCCCC---CCCCCCCCCCCCCCEEEC
Q ss_conf 000111---356654444434430000
Q gi|254780206|r 205 ARDHKR---IHDGDIGPNTGGMGACSP 228 (424)
Q Consensus 205 ~~dyKr---~~~~d~GpnTGGMGa~~p 228 (424)
+++-.. ......+|.-|=+|++++
T Consensus 190 ~~~~~~~~~~~~~~~~p~igy~G~i~~ 216 (373)
T cd04950 190 ARDPPPPPADLAALPRPVIGYYGAIAE 216 (373)
T ss_pred HCCCCCCCHHHCCCCCCEEEEEECCCC
T ss_conf 015768804550479988999925752
No 415
>PRK10637 cysG siroheme synthase; Provisional
Probab=47.04 E-value=20 Score=15.82 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=15.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 58998865889999999985899
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPL 24 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~ 24 (424)
+|||+|+|.-...=+..|.+...
T Consensus 14 ~vLVVGGG~vA~rK~~~Ll~agA 36 (457)
T PRK10637 14 DCLIVGGGDVAERKARLLLDAGA 36 (457)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC
T ss_conf 69998998999999999987898
No 416
>cd00279 YlxR Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation
Probab=47.04 E-value=20 Score=15.82 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH-----HHHHCC
Q ss_conf 4401111121012420256304653430002323567788878-----875144
Q gi|254780206|r 124 SDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAI-----DRCFQQ 172 (424)
Q Consensus 124 ~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~-----~~~~~~ 172 (424)
.+.+++..++..-.--+++-+.+-..|+|.+++.+.+-+..++ .++|..
T Consensus 12 ~~k~~LiR~V~~~dg~v~~D~~~k~~GRGAyv~~~~~c~~~A~~k~~l~ra~k~ 65 (79)
T cd00279 12 KPKKELIRFVAGPEGEVVPDPTGKLPGRGAYVCADRECIEKAKKKKLFNRAFKA 65 (79)
T ss_pred CCHHHHHEEEECCCCEEEECCCCCCCCCEEEECCCHHHHHHHHHHCHHHHHHCC
T ss_conf 696774155877998099898888787878987999999999982956798789
No 417
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=47.01 E-value=20 Score=15.82 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHCCCEEEE
Q ss_conf 9899999998718979999
Q gi|254780206|r 50 NHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 50 d~~~i~~~a~~~~iDlviv 68 (424)
|.+++++.+.+++++++++
T Consensus 148 d~d~l~~ai~~~~~klv~l 166 (369)
T PRK03317 148 DVDAAVAAIREHRPDVVFL 166 (369)
T ss_pred CHHHHHHHHHCCCCCEEEE
T ss_conf 9999999863269858997
No 418
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=46.94 E-value=20 Score=15.81 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=19.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 95899886588999999998589
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSP 23 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~ 23 (424)
|||+|+|.|+----++..|.+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC
T ss_conf 95999878789999999998589
No 419
>PRK06179 short chain dehydrogenase; Provisional
Probab=46.77 E-value=20 Score=15.79 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=38.6
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHH---CCEEEECCCCCHHHHHHHHHHH-----CCCEEE
Q ss_conf 8998865-889999999985899678999549835751---1705512878989999999871-----897999
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQ---HAQCVAIDIQNHSAIIHFCQEK-----HIDLVV 67 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~---~~~~~~i~~~d~~~i~~~a~~~-----~iDlvi 67 (424)
+||-|.+ |--.|+|..|.+... +|+..--|..... ..+.+..|.+|.+++.+++++. ++|..|
T Consensus 7 alITGassGIG~a~A~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~iDiLV 78 (270)
T PRK06179 7 ALVTGASSGIGRATAEALARAGY--RVFGTSRNPARATPIPGVELLELDVTDDASVQAAVQEVIARAGRIDVLV 78 (270)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99907246999999999998799--9999968977730548978999107999999999999999839988899
No 420
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=46.72 E-value=20 Score=15.79 Aligned_cols=170 Identities=23% Similarity=0.331 Sum_probs=78.0
Q ss_pred EEEEECCCHHH----HHHHHHHHHCCCCCEEEEECCC-------HHHH-HC-CEEEECCCCCHH-----HHHHHHHHHCC
Q ss_conf 58998865889----9999999858996789995498-------3575-11-705512878989-----99999987189
Q gi|254780206|r 2 RVLLIGSGGRE----HALAWKIAQSPLLSELWSIPGN-------PGIA-QH-AQCVAIDIQNHS-----AIIHFCQEKHI 63 (424)
Q Consensus 2 kILviGsGgrE----hAl~~~l~~s~~~~~v~~~pgN-------~g~~-~~-~~~~~i~~~d~~-----~i~~~a~~~~i 63 (424)
|||+.=+||-. --|+..|.+... +|.|+.-. |-+. .+ ...+..|..+.+ .-+++++. .
T Consensus 73 kIlLgVtGsIAAYKa~~LvR~L~k~Ga--~V~vvmT~~A~~FVtplt~~~ls~~~V~tdl~~~~~~~~~~HI~La~~--A 148 (476)
T PRK13982 73 RITLIIGGGIAAYKALDLIRRLKERGA--EVRCVLTKAAQQFVTPLTASALSGQRVYTDLFDPESEFDAGHIRLARD--C 148 (476)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHCCC--EEEEEECHHHHHHCCHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHH--C
T ss_conf 799996748999999999999997899--899997877863418999999839977702678765677765144144--4
Q ss_pred CEEEECCCHH-----HHHHHHHHHH-----HCCCCEE-ECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 7999979557-----8748998986-----0588067-010666555201023578887653101111223440111112
Q gi|254780206|r 64 DLVVVGPELP-----LVNGISDALN-----AAGFKVF-GPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQY 132 (424)
Q Consensus 64 DlvivgpE~p-----L~~gi~d~l~-----~~gi~v~-Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~ 132 (424)
|+++|.|-.. ++.|++|-|- ...-|++ .|.... -|.++ -. ..+-.+.
T Consensus 149 DlilVAPATAN~IaK~A~GiADdllst~~LA~~~pvliaPAMN~------------~Mw~n---------pa-tq~Ni~~ 206 (476)
T PRK13982 149 DLIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNP------------LMWNN---------PA-TRRNVAQ 206 (476)
T ss_pred CEEEECCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCH------------HHHHC---------HH-HHHHHHH
T ss_conf 99998238999999997566556999999865997799958299------------98869---------99-9999999
Q ss_pred HHCCCCEEEEEEC-C-CC-CC-CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 1012420256304-6-53-43-00023235677888788751445317778877520575234421577631035200
Q gi|254780206|r 133 VQNKSMPIVVKAD-G-LC-AG-KGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTAR 206 (424)
Q Consensus 133 ~~~~g~PvVVKp~-~-~a-gG-kGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~ 206 (424)
+.+.|+ .+|-|. | ++ .| .|.-...+.++...+++..+.... ++.+.|..+ .++-|-+.-++-++|
T Consensus 207 L~~~G~-~ii~P~~G~lA~cge~G~GRl~ep~~Iv~~i~~~l~~~~-----~~~L~GkkV---LITAGpT~E~IDPVR 275 (476)
T PRK13982 207 LKRDGV-HMIGPNAGEMAERGEAGVGRMAEPLEIAAAAEALLRPPQ-----PKPLAGRRV---LITAGPTHEPIDPVR 275 (476)
T ss_pred HHCCCC-EECCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCCCCCEE---EEECCCCCEEECCCC
T ss_conf 861498-845886660120466577889999999999999872145-----555679889---996688712226745
No 421
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=46.66 E-value=20 Score=15.78 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 89899999998718979999795578
Q gi|254780206|r 49 QNHSAIIHFCQEKHIDLVVVGPELPL 74 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iDlvivgpE~pL 74 (424)
.+.+++++.+.+.++|++++|--.|.
T Consensus 86 ~~~~~i~~~I~~~~~div~vglG~Pk 111 (171)
T cd06533 86 EEEEEIIERINASGADILFVGLGAPK 111 (171)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 66899999998649999999679828
No 422
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=46.60 E-value=20 Score=15.78 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=42.0
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHH-----HHCC---EEEECCCCCHHHHHHHHHHH-----CCCEE
Q ss_conf 958998865-8899999999858996789995498357-----5117---05512878989999999871-----89799
Q gi|254780206|r 1 MRVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGI-----AQHA---QCVAIDIQNHSAIIHFCQEK-----HIDLV 66 (424)
Q Consensus 1 MkILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~-----~~~~---~~~~i~~~d~~~i~~~a~~~-----~iDlv 66 (424)
|-|||-|++ |--.|+|.+|.+... +|++.--|..- .++. ..+..|..|.+++.+++.+. .+|..
T Consensus 1 mVvlVTGassGIG~a~A~~la~~Ga--~Vv~~~r~~~~l~~l~~~lg~~~~~~~~Dvsd~~~v~~~~~~~~~~~g~iDiL 78 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQNGH--KVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDIL 78 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9999988866999999999998799--99999899999999999848867999973488899999999999970997599
Q ss_pred E
Q ss_conf 9
Q gi|254780206|r 67 V 67 (424)
Q Consensus 67 i 67 (424)
|
T Consensus 79 V 79 (248)
T PRK10538 79 V 79 (248)
T ss_pred E
T ss_conf 9
No 423
>PRK07454 short chain dehydrogenase; Provisional
Probab=46.42 E-value=20 Score=15.76 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=38.5
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHH-H----H------CCEEEECCCCCHHHHHHHHHHH-----C
Q ss_conf 958998865--8899999999858996789995498357-5----1------1705512878989999999871-----8
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGI-A----Q------HAQCVAIDIQNHSAIIHFCQEK-----H 62 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~-~----~------~~~~~~i~~~d~~~i~~~a~~~-----~ 62 (424)
||+-||-++ |--.|+|.+|.+... +|++.--|..- . + ....+..|..|.+++.+++++. .
T Consensus 6 mKvalITGas~GIG~a~A~~la~~G~--~V~l~~R~~~~l~~~~~e~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 83 (241)
T PRK07454 6 MPTALITGASRGIGKATALAFAKAGW--DLALVARSQDALEALAEELRSTGVKVAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 98899917587899999999998799--8999989999999999999965992899995189999999999999997599
Q ss_pred CCEEE
Q ss_conf 97999
Q gi|254780206|r 63 IDLVV 67 (424)
Q Consensus 63 iDlvi 67 (424)
||..|
T Consensus 84 iDiLV 88 (241)
T PRK07454 84 PSVLI 88 (241)
T ss_pred CCEEE
T ss_conf 88999
No 424
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=46.35 E-value=20 Score=15.82 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=23.1
Q ss_pred CEEEEECCCHHHH-----HHHHHHHHCCCCCEEEEEC
Q ss_conf 9589988658899-----9999998589967899954
Q gi|254780206|r 1 MRVLLIGSGGREH-----ALAWKIAQSPLLSELWSIP 32 (424)
Q Consensus 1 MkILviGsGgrEh-----Al~~~l~~s~~~~~v~~~p 32 (424)
||||+++.|.+-| ||+++|++....- +|.+.
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV-~~~~~ 37 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEV-VFAST 37 (406)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCEE-EEEEC
T ss_conf 5799981776432266699999999769749-99737
No 425
>TIGR01069 mutS2 MutS2 family protein; InterPro: IPR005747 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure , and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts . This entry represents a family of MutS proteins.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0045005 maintenance of fidelity during DNA-dependent DNA replication.
Probab=46.32 E-value=6.5 Score=19.36 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=9.1
Q ss_pred EEECCCHHHHHHHHHHHHHCC
Q ss_conf 996289899999999998525
Q gi|254780206|r 378 TALGKTITESRELAYHMVENI 398 (424)
Q Consensus 378 v~~g~~l~eA~~~ay~~i~~I 398 (424)
-..|+..++|.+...+.++.+
T Consensus 760 DlRG~R~E~Al~~LeK~l~~A 780 (834)
T TIGR01069 760 DLRGERSEEALDRLEKFLDDA 780 (834)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 345302799999999999999
No 426
>PRK13139 consensus
Probab=46.29 E-value=21 Score=15.74 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=7.0
Q ss_pred HHHHHHHHHCCCEEEEC
Q ss_conf 99999987189799997
Q gi|254780206|r 53 AIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 53 ~i~~~a~~~~iDlvivg 69 (424)
.++....+..+|++=+|
T Consensus 34 ~~~~~l~~~GaDiiElG 50 (254)
T PRK13139 34 EVIRAMVAGGVDLMELQ 50 (254)
T ss_pred HHHHHHHHCCCCEEEEC
T ss_conf 99999996699999978
No 427
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=46.21 E-value=21 Score=15.74 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=5.4
Q ss_pred CCCCCCCCHHH
Q ss_conf 34300023235
Q gi|254780206|r 148 CAGKGVVVAAT 158 (424)
Q Consensus 148 agGkGV~i~~~ 158 (424)
+||-|+.-...
T Consensus 95 aGG~GiaPl~~ 105 (233)
T cd06220 95 GGGIGIAPLAP 105 (233)
T ss_pred ECCEEHHHHHH
T ss_conf 17464677799
No 428
>pfam00390 malic Malic enzyme, N-terminal domain.
Probab=46.19 E-value=18 Score=16.13 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 575234421577631035200011135665444443443
Q gi|254780206|r 186 FEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMG 224 (424)
Q Consensus 186 ~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMG 224 (424)
.++.+.+++||+.++-| ||.| ++|||
T Consensus 65 ~~v~~iVVTDGerILGL-----------GDlG--~~Gm~ 90 (182)
T pfam00390 65 EDVRVIVVTDGERILGL-----------GDLG--VAGMP 90 (182)
T ss_pred CCCEEEEEECCCCCCCC-----------CCCC--CCCCC
T ss_conf 67359998567301466-----------7656--57650
No 429
>PRK13124 consensus
Probab=46.16 E-value=21 Score=15.73 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHH----CCCEEEECCCHHH-HHHH---HHHHHHCCCC-EEECCHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 78989999999871----8979999795578-7489---9898605880-670106665552010235788876531011
Q gi|254780206|r 48 IQNHSAIIHFCQEK----HIDLVVVGPELPL-VNGI---SDALNAAGFK-VFGPSQRAAKLESSKSFAKKFCTKYGIPTA 118 (424)
Q Consensus 48 ~~d~~~i~~~a~~~----~iDlvivgpE~pL-~~gi---~d~l~~~gi~-v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~ 118 (424)
-.+.+.+.+++++. ++-+++-+=-.|+ .-|+ +..+.+.|+. ++-|.-- +|-+..+ ++.++++|+...
T Consensus 67 G~~~~~~~~~~~~~r~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP---~eE~~~~-~~~~~~~gl~~I 142 (257)
T PRK13124 67 GMNIVKAMELVGKMRKKVTIPIVYFTYYNPVLQYGLEKFFALARENGIDGLLIPDLP---LEESGEL-QEICDKYGIYLI 142 (257)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC---HHHHHHH-HHHHHHCCCCEE
T ss_conf 996899999999852447888899750078987579999999997599847778999---7999999-999986687357
Q ss_pred CCCCCCCCHHHHHHHHC-CCCEEEEEECCCCCC
Q ss_conf 11223440111112101-242025630465343
Q gi|254780206|r 119 TYQHFSDPMKAKQYVQN-KSMPIVVKADGLCAG 150 (424)
Q Consensus 119 ~~~~~~~~~ea~~~~~~-~g~PvVVKp~~~agG 150 (424)
.+..-++.+.+...++. -||=+.|=-.|..|.
T Consensus 143 ~lvaPTs~~Ri~~i~~~s~gFiY~vs~~GvTG~ 175 (257)
T PRK13124 143 PLVAPTSKERIKKIAEQAEGFVYCVSSLGVTGV 175 (257)
T ss_pred EEECCCCHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 884799679999998548983899624666787
No 430
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=45.93 E-value=21 Score=15.71 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=14.2
Q ss_pred CHHHHHHHHCCCCEEEEEECC
Q ss_conf 011111210124202563046
Q gi|254780206|r 126 PMKAKQYVQNKSMPIVVKADG 146 (424)
Q Consensus 126 ~~ea~~~~~~~g~PvVVKp~~ 146 (424)
.+...+..+..+.|++||-.|
T Consensus 175 l~~I~~i~~~~~vPVIvKeVG 195 (351)
T PRK05437 175 LDRIAEIVSALPVPVIVKEVG 195 (351)
T ss_pred HHHHHHHHHHCCCCEEEEECC
T ss_conf 999999998679988985215
No 431
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=45.89 E-value=21 Score=15.70 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=47.2
Q ss_pred CEEEEECCCHHH-HHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHH
Q ss_conf 958998865889-9999999858996789995498357511705512878989999999871897999979557874899
Q gi|254780206|r 1 MRVLLIGSGGRE-HALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGIS 79 (424)
Q Consensus 1 MkILviGsGgrE-hAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~ 79 (424)
|+||||..-+-- +.|...|..++.++-|..+ .|-...++.+++.++|.+...-|-|-.+|+-
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a-----------------~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~ 64 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTA-----------------RNGREAIDKVKKLKPDVITLDVEMPVMDGLE 64 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC-----------------CCHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 47999858199999999998308973799733-----------------7879999999722997899725664454799
Q ss_pred ---HHHHHCCCCEEECCH
Q ss_conf ---898605880670106
Q gi|254780206|r 80 ---DALNAAGFKVFGPSQ 94 (424)
Q Consensus 80 ---d~l~~~gi~v~Gp~~ 94 (424)
..++....||+--+.
T Consensus 65 ~l~~im~~~p~pVimvss 82 (350)
T COG2201 65 ALRKIMRLRPLPVIMVSS 82 (350)
T ss_pred HHHHHHCCCCCCEEEEEC
T ss_conf 999984479986899951
No 432
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=45.89 E-value=21 Score=15.70 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=36.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHH-HHCCEEEE--CCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 589988658899999999858996789995498357-51170551--287898999999987189799997
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGI-AQHAQCVA--IDIQNHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~-~~~~~~~~--i~~~d~~~i~~~a~~~~iDlvivg 69 (424)
||.+||.|---+||+..|.++.. +.+++..-|+.. ..+.+... +...|.+++++ +-|++|.+
T Consensus 1 KIg~IG~G~mg~ai~~~l~~~g~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~DvIila 65 (93)
T pfam03807 1 KIGIIGAGNMGEALARGLAAAGH-EVIIANSRNPEKAAALAEELGVGATAVSNEEAAE-----EADVVILA 65 (93)
T ss_pred CEEEECCHHHHHHHHHHHHHCCC-CCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHH-----CCCEEEEE
T ss_conf 98999700999999999997799-6127864878999999998199764589999974-----49989999
No 433
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=45.86 E-value=21 Score=15.70 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=6.8
Q ss_pred HHHHHHHHHHCCCEEEEC
Q ss_conf 999999987189799997
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivg 69 (424)
+++++.+.+.++|++++|
T Consensus 91 ~~i~~~I~~~~~div~vg 108 (172)
T pfam03808 91 EAIIEAINASGPDLLFVG 108 (172)
T ss_pred HHHHHHHHHCCCCEEEEE
T ss_conf 999999984599999995
No 434
>PRK13129 consensus
Probab=45.57 E-value=21 Score=15.67 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=8.6
Q ss_pred HHHHHHHHHHCCCCCCCCC
Q ss_conf 7888765310111122344
Q gi|254780206|r 107 KKFCTKYGIPTATYQHFSD 125 (424)
Q Consensus 107 K~~l~~~gIPt~~~~~~~~ 125 (424)
++.++++|+.......-++
T Consensus 141 ~~~~~~~gl~~I~lvaPtt 159 (267)
T PRK13129 141 SPIAAERGIDLILLVAPTT 159 (267)
T ss_pred HHHHHHCCCEEEEEECCCC
T ss_conf 9999853981689948999
No 435
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=45.52 E-value=21 Score=15.66 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=43.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECC-CHHHHH-CCEEEEC-CCCCHHHHHHHHHHHCCCEEEE--CCCHHHH
Q ss_conf 958998865889999999985899678999549-835751-1705512-8789899999998718979999--7955787
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPG-NPGIAQ-HAQCVAI-DIQNHSAIIHFCQEKHIDLVVV--GPELPLV 75 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pg-N~g~~~-~~~~~~i-~~~d~~~i~~~a~~~~iDlviv--gpE~pL~ 75 (424)
|||.+||.|+--..++..+...+..-+.+.+++ +..-.. +...+.. ..++.++.+ ..+|+++= ++++ .-
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~-----~~~DlvVEaAS~~A-v~ 74 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELI-----AEVDLVVEAASPEA-VR 74 (255)
T ss_pred CEEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHH-----HCCCEEEEECCHHH-HH
T ss_conf 9578982337889999998668864369999448878888888603887635677773-----02442543078899-99
Q ss_pred HHHHHHHHHCCCCEEECC
Q ss_conf 489989860588067010
Q gi|254780206|r 76 NGISDALNAAGFKVFGPS 93 (424)
Q Consensus 76 ~gi~d~l~~~gi~v~Gp~ 93 (424)
.-+.+.| ++|+.|+=-|
T Consensus 75 e~~~~~L-~~g~d~iV~S 91 (255)
T COG1712 75 EYVPKIL-KAGIDVIVMS 91 (255)
T ss_pred HHHHHHH-HCCCCEEEEE
T ss_conf 9869999-6599889995
No 436
>PRK13114 consensus
Probab=45.52 E-value=21 Score=15.66 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=43.5
Q ss_pred CHHHHHHHHHH---H--CCCEEEECCCHHH-HHH---HHHHHHHCCCCE-EECCHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 98999999987---1--8979999795578-748---998986058806-701066655520102357888765310111
Q gi|254780206|r 50 NHSAIIHFCQE---K--HIDLVVVGPELPL-VNG---ISDALNAAGFKV-FGPSQRAAKLESSKSFAKKFCTKYGIPTAT 119 (424)
Q Consensus 50 d~~~i~~~a~~---~--~iDlvivgpE~pL-~~g---i~d~l~~~gi~v-~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~ 119 (424)
..+.+.+++++ . ++-+++-+=-.|+ .-| ++..+.+.|+.= +-|.-- .|-+..| ++.++++||....
T Consensus 73 ~l~~~f~~v~~~r~~~~~~PivlM~Y~N~i~~~G~~~F~~~~~~aGvdG~IipDLP---~eE~~~~-~~~~~~~gi~~I~ 148 (266)
T PRK13114 73 TTADIFRIAAEFRQRHPEVPLVLMGYANPMVRRGPDWFAAECKKAGVDGVICVDIP---PEEDAEL-GPALRAAGIDPIR 148 (266)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCC---HHHHHHH-HHHHHHCCCCEEE
T ss_conf 79999999999874189988799863019998649999999997499779845899---7888999-9999974997267
Q ss_pred CCCCCCCH-HHHHHHH-CCCCEEEEEECCCCCCC
Q ss_conf 12234401-1111210-12420256304653430
Q gi|254780206|r 120 YQHFSDPM-KAKQYVQ-NKSMPIVVKADGLCAGK 151 (424)
Q Consensus 120 ~~~~~~~~-ea~~~~~-~~g~PvVVKp~~~agGk 151 (424)
...-++.+ -+.+.++ .-||=+.|=-.|..|.+
T Consensus 149 liaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~ 182 (266)
T PRK13114 149 LATPTTDAARLPAVLEGASGFLYYVSVAGITGMQ 182 (266)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 7569997999999997389958998445566776
No 437
>PRK07024 short chain dehydrogenase; Provisional
Probab=45.47 E-value=21 Score=15.66 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=39.9
Q ss_pred EEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCH-HHHH----C----CEEEECCCCCHHHHHHHHHH-----HCCCEE
Q ss_conf 58998865-88999999998589967899954983-5751----1----70551287898999999987-----189799
Q gi|254780206|r 2 RVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNP-GIAQ----H----AQCVAIDIQNHSAIIHFCQE-----KHIDLV 66 (424)
Q Consensus 2 kILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~-g~~~----~----~~~~~i~~~d~~~i~~~a~~-----~~iDlv 66 (424)
||||.|.. |--.|+|..|.+... +|+++--|. .... + ...+..|..|.+++.+++++ ..||.+
T Consensus 4 ~VlITGassGIG~a~A~~la~~G~--~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~iDil 81 (256)
T PRK07024 4 KVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAHGCPDVV 81 (256)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 899984602999999999998899--899998988999999997679976999811799999999999999983998799
Q ss_pred E
Q ss_conf 9
Q gi|254780206|r 67 V 67 (424)
Q Consensus 67 i 67 (424)
|
T Consensus 82 i 82 (256)
T PRK07024 82 I 82 (256)
T ss_pred E
T ss_conf 9
No 438
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=45.42 E-value=9.8 Score=18.08 Aligned_cols=50 Identities=24% Similarity=0.468 Sum_probs=34.0
Q ss_pred EEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE----EEEECCCCCCC
Q ss_conf 66445448985570489998865147751044332654411566654201333321234444206----75422544668
Q gi|254780206|r 260 QGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNLHNTHINWKAEYAL----TVVVATKGYPE 335 (424)
Q Consensus 260 ~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~L~~~~~~~~~~~~v----~Vvlas~GYP~ 335 (424)
||+||+| |+| +|+..|+|+|++++.+-.|-++ +++-|+ =-||+--|=|+
T Consensus 135 RG~LYiD-----------EVN-------------LLeDHlVDvLLDvAasG~NvVE---REG~SiRHPARFVLVGSGNPE 187 (340)
T TIGR02030 135 RGYLYID-----------EVN-------------LLEDHLVDVLLDVAASGVNVVE---REGVSIRHPARFVLVGSGNPE 187 (340)
T ss_pred CCCEEEE-----------EEH-------------HHHHHHHHHHHHHCCCCCEEEE---ECCEEEECCCCEEEECCCCCC
T ss_conf 7842552-----------100-------------0124566566522047830586---356023037635871578887
Q ss_pred C
Q ss_conf 7
Q gi|254780206|r 336 E 336 (424)
Q Consensus 336 ~ 336 (424)
.
T Consensus 188 E 188 (340)
T TIGR02030 188 E 188 (340)
T ss_pred C
T ss_conf 6
No 439
>PRK06500 short chain dehydrogenase; Provisional
Probab=45.33 E-value=21 Score=15.64 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=37.4
Q ss_pred EEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHH-----HHC---CEEEECCCCCHHHHHHHHHHH-----CCCEEE
Q ss_conf 58998865-8899999999858996789995498357-----511---705512878989999999871-----897999
Q gi|254780206|r 2 RVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGI-----AQH---AQCVAIDIQNHSAIIHFCQEK-----HIDLVV 67 (424)
Q Consensus 2 kILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~-----~~~---~~~~~i~~~d~~~i~~~a~~~-----~iDlvi 67 (424)
.+||-|++ |--.|+|+.|.+... +|++..-|+.. ..+ ...+..|..|.+.+.+++++. +||..|
T Consensus 8 ~~lITGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDiLv 85 (249)
T PRK06500 8 TALITGGTSGIGLETARQFAAEGA--RVAITGRDAATLEAARAELGEDALVIRNDAGSVAAQRALAQALAEAGGRLDAVF 85 (249)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 899937687899999999998799--999996998999999998589759999517999999999999999769998999
No 440
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=45.30 E-value=21 Score=15.64 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=11.4
Q ss_pred EEEECCCHHHHHCCEEEECCCCCHHHHHHHHH
Q ss_conf 99954983575117055128789899999998
Q gi|254780206|r 28 LWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQ 59 (424)
Q Consensus 28 v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~ 59 (424)
+|+.-+|-.|..+..-......|.+++.+++-
T Consensus 4 v~~~GDnIdTD~I~P~~~l~~~~~~~l~~~~f 35 (163)
T PRK00439 4 VWKFGDNIDTDVIIPGRYLNTSDPDELAKHAM 35 (163)
T ss_pred EEECCCCCCHHHCCCHHHHCCCCHHHHHHHCC
T ss_conf 68779998864375276656599778877413
No 441
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.30 E-value=21 Score=15.64 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=14.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 958998865889999999985899
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPL 24 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~ 24 (424)
.+|||||+|.-...=+..|.+...
T Consensus 11 k~vLVVGGG~vA~rK~~~Ll~~gA 34 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGA 34 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 869998898999999999986899
No 442
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.16 E-value=21 Score=15.63 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=50.3
Q ss_pred HHHHHHHHHHCC-CEEEECCC---HHH---HHHHHHHHHH-CCCCEE---ECCHHH-HHHHHCCHHHHHHHHHH---H--
Q ss_conf 999999987189-79999795---578---7489989860-588067---010666-55520102357888765---3--
Q gi|254780206|r 52 SAIIHFCQEKHI-DLVVVGPE---LPL---VNGISDALNA-AGFKVF---GPSQRA-AKLESSKSFAKKFCTKY---G-- 114 (424)
Q Consensus 52 ~~i~~~a~~~~i-DlvivgpE---~pL---~~gi~d~l~~-~gi~v~---Gp~~~a-a~le~sK~~~K~~l~~~---g-- 114 (424)
+++.+..++.++ ..++|... .-+ ..+++..+++ .|+||+ +|+-.. ++-.+.+.....+++.. .
T Consensus 88 ~aI~ea~~~~~P~kaIfV~sTC~~glIGDDI~aV~~~~~~~~gipVIpv~~~GF~g~s~~~G~~~a~~al~~~vv~~~~~ 167 (421)
T cd01976 88 KAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASKELGIPVVPVRCEGFRGVSQSLGHHIANDAIRDHILGKRNE 167 (421)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999998579730899992373786556899999998775299889986898577523068899999999984166887
Q ss_pred -HHCC-------CCCCCCCCHHHHHHHHCCCCEEEEEECC
Q ss_conf -1011-------1122344011111210124202563046
Q gi|254780206|r 115 -IPTA-------TYQHFSDPMKAKQYVQNKSMPIVVKADG 146 (424)
Q Consensus 115 -IPt~-------~~~~~~~~~ea~~~~~~~g~PvVVKp~~ 146 (424)
-|+| .|....+..+....++++|.-++..-.|
T Consensus 168 ~~~~~~~iNiige~ni~gd~~~i~~lL~~mGi~V~~~~tg 207 (421)
T cd01976 168 FEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSG 207 (421)
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 7889841799755667632999999999839837999808
No 443
>KOG2157 consensus
Probab=45.14 E-value=13 Score=17.08 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=26.4
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 24202563046534300023235677888788
Q gi|254780206|r 136 KSMPIVVKADGLCAGKGVVVAATVDEATSAID 167 (424)
Q Consensus 136 ~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~ 167 (424)
-....++||.+.+-|+|+++..+.++....+.
T Consensus 198 ~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~ 229 (497)
T KOG2157 198 ERSWWIVKPASKSRGRGIFLFNTLSDLQAIVD 229 (497)
T ss_pred CCCEEEECCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 46668964432101652688623566565431
No 444
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=44.99 E-value=19 Score=16.05 Aligned_cols=21 Identities=5% Similarity=-0.133 Sum_probs=12.0
Q ss_pred EEEECCCHHHHHHHHHHHHHC
Q ss_conf 999628989999999999852
Q gi|254780206|r 377 ATALGKTITESRELAYHMVEN 397 (424)
Q Consensus 377 vv~~g~~l~eA~~~ay~~i~~ 397 (424)
....-++|++|.++.-+-+..
T Consensus 494 yaps~e~L~EA~~RI~~FL~~ 514 (518)
T PRK13355 494 YLPRLGMLEETMDELDDFFSY 514 (518)
T ss_pred ECCCHHHHHHHHHHHHHHHHH
T ss_conf 279999999999999999998
No 445
>PRK08017 short chain dehydrogenase; Provisional
Probab=44.97 E-value=21 Score=15.61 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=33.6
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHH-HH----CCEEEECCCCCHHHHHHHHHH
Q ss_conf 8998865-8899999999858996789995498357-51----170551287898999999987
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGI-AQ----HAQCVAIDIQNHSAIIHFCQE 60 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~-~~----~~~~~~i~~~d~~~i~~~a~~ 60 (424)
|||.|+. |--.|+|..|.+... .|+.+--++.- .. ..+.+.+|..|.+.+.+.+.+
T Consensus 5 vlITGassGIG~a~A~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 66 (256)
T PRK08017 5 VLITGCSSGIGLESALELKRQGF--RVLAGCRKPDDVARMNSMGFTGVLIDLDSPESVDRAADE 66 (256)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 99965876899999999998799--999996998999999856994699835898999999999
No 446
>PRK05650 short chain dehydrogenase; Provisional
Probab=44.94 E-value=22 Score=15.60 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=39.8
Q ss_pred EEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHH----HH-----CCE--EEECCCCCHHHHHHHHHH-----HCCC
Q ss_conf 58998865-8899999999858996789995498357----51-----170--551287898999999987-----1897
Q gi|254780206|r 2 RVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGI----AQ-----HAQ--CVAIDIQNHSAIIHFCQE-----KHID 64 (424)
Q Consensus 2 kILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~----~~-----~~~--~~~i~~~d~~~i~~~a~~-----~~iD 64 (424)
||||-|.+ |--.|+|..|.+... +|.++.-|... .. ..+ .+..|.+|.+++.+++.+ ..||
T Consensus 2 rVlITGassGIG~alA~~la~~G~--~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~~~~~~~~v~~~~g~iD 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKELREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 799988764999999999998899--899997988999999999984499289998458999999999999999839977
Q ss_pred EEE
Q ss_conf 999
Q gi|254780206|r 65 LVV 67 (424)
Q Consensus 65 lvi 67 (424)
+.|
T Consensus 80 iLV 82 (270)
T PRK05650 80 VIV 82 (270)
T ss_pred EEE
T ss_conf 896
No 447
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.91 E-value=22 Score=15.60 Aligned_cols=142 Identities=21% Similarity=0.310 Sum_probs=72.9
Q ss_pred CEEEEECCCHH-HHHHHHHHHHCCCCCEEEEECCCHHHH----HCCEEEECCCCCHHHHHHHHHHHCCCEEEE-CC----
Q ss_conf 95899886588-999999998589967899954983575----117055128789899999998718979999-79----
Q gi|254780206|r 1 MRVLLIGSGGR-EHALAWKIAQSPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSAIIHFCQEKHIDLVVV-GP---- 70 (424)
Q Consensus 1 MkILviGsGgr-EhAl~~~l~~s~~~~~v~~~pgN~g~~----~~~~~~~i~~~d~~~i~~~a~~~~iDlviv-gp---- 70 (424)
|+|||.|.-|. -.++++.|.+... .|..+--|+.-. ...+...-|..+...+...+ ..+|.++. .+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~~~--~G~~~~~~i~~~~~~ 76 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALAGGVEVVLGDLRDPKSLVAGA--KGVDGVLLISGLLDG 76 (275)
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCC--EEEEECCCCHHHHHCCCCCEEECCCCCCCHHHHHHH--CCCEEEEEECCCCCC
T ss_conf 9389986777579999999997598--699973682211110378528845641607799984--894179995254556
Q ss_pred C----HHHHHHHHHHHHHCC--C------CEEECCH-HHHHHHHCCHHHHHHHHHHHHHCCCCC---CCCCCHHH-HHHH
Q ss_conf 5----578748998986058--8------0670106-665552010235788876531011112---23440111-1121
Q gi|254780206|r 71 E----LPLVNGISDALNAAG--F------KVFGPSQ-RAAKLESSKSFAKKFCTKYGIPTATYQ---HFSDPMKA-KQYV 133 (424)
Q Consensus 71 E----~pL~~gi~d~l~~~g--i------~v~Gp~~-~aa~le~sK~~~K~~l~~~gIPt~~~~---~~~~~~ea-~~~~ 133 (424)
+ ..-...+++..+..+ . .++++.. ..+.+..+|..+...+...|+|..-.. .+.+.... ....
T Consensus 77 ~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~t~lr~~~~~~~~~~~~~~~~ 156 (275)
T COG0702 77 SDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPYTTLRRAAFYLGAGAAFIEAA 156 (275)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHH
T ss_conf 63012003678999998627442432687502356688067899999999999856986203556300115305679999
Q ss_pred HCCCCEEEEEECC
Q ss_conf 0124202563046
Q gi|254780206|r 134 QNKSMPIVVKADG 146 (424)
Q Consensus 134 ~~~g~PvVVKp~~ 146 (424)
...+.|+...+.+
T Consensus 157 ~~~~~~~~~~~~~ 169 (275)
T COG0702 157 EAAGLPVIPRGIG 169 (275)
T ss_pred HHCCCCEEECCCC
T ss_conf 8458851412566
No 448
>PRK07538 hypothetical protein; Provisional
Probab=44.84 E-value=22 Score=15.59 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=19.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 95899886588999999998589967899
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELW 29 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~ 29 (424)
|||+|+|.|=---++|..|.+...-..||
T Consensus 1 m~V~IvGaG~aGL~lA~~L~~~Gi~v~V~ 29 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVEVF 29 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 98999990589999999999789998999
No 449
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=44.82 E-value=22 Score=15.59 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=25.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH
Q ss_conf 958998865889999999985899678999549835
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPG 36 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g 36 (424)
|||-+||=|-=-.+++..|.+... +|++.+-++.
T Consensus 2 MkIgfIGlG~MG~~ma~~L~~~G~--~v~v~dr~~~ 35 (295)
T PRK11559 2 MKVGFIGLGIMGKPMSKNLLKAGY--SLVVYDRNPE 35 (295)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCHH
T ss_conf 789998405769999999997899--5899929999
No 450
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=44.75 E-value=22 Score=15.58 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEC-CCHHH-HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 87898999999987189799997-95578-74899898605880670106665552010235788876531011112234
Q gi|254780206|r 47 DIQNHSAIIHFCQEKHIDLVVVG-PELPL-VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFS 124 (424)
Q Consensus 47 ~~~d~~~i~~~a~~~~iDlvivg-pE~pL-~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~ 124 (424)
++..-....+|-++++|++.++- -+.|+ .+-+.+.++..|..+ +. |-..+. ..+++.| -.....+
T Consensus 10 ~C~t~rka~~~L~~~gi~~~~~~~~~~~~s~~eL~~~l~~~g~~~-----~~--li~t~~---~~~r~L~---~~~~~~~ 76 (117)
T COG1393 10 NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGV-----EE--LINTRG---TTYRELN---LDKEDLS 76 (117)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCH-----HH--HHHHCC---CHHHHCC---CCCCCCC
T ss_conf 875899999999986999679882069999999999999848469-----99--987145---0587758---7532358
Q ss_pred CCHHHHHHHHC---CCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 40111112101---2420256304653430002323567788878
Q gi|254780206|r 125 DPMKAKQYVQN---KSMPIVVKADGLCAGKGVVVAATVDEATSAI 166 (424)
Q Consensus 125 ~~~ea~~~~~~---~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~ 166 (424)
+.+.+...+++ +..|+||.+ +++.+..+.++..+.+
T Consensus 77 ~~~~~~~i~~~~~LikRPivv~~------~~~~iG~~~e~~~~~l 115 (117)
T COG1393 77 DEELIEALLENPSLIKRPIVVDN------KKLRVGFNEEEIRAFL 115 (117)
T ss_pred HHHHHHHHHHCHHHHCCCEEEEC------CCEEECCCHHHHHHHH
T ss_conf 69999999858344048769859------9468548999999884
No 451
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=44.66 E-value=22 Score=15.57 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=40.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCCEEEEECCCHHHH-HCCEEE--ECCCCCHHHHHHHHHHHCCCEEEE--CCCHHH
Q ss_conf 9589988658899999999858-9967899954983575-117055--128789899999998718979999--795578
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQS-PLLSELWSIPGNPGIA-QHAQCV--AIDIQNHSAIIHFCQEKHIDLVVV--GPELPL 74 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s-~~~~~v~~~pgN~g~~-~~~~~~--~i~~~d~~~i~~~a~~~~iDlviv--gpE~pL 74 (424)
|||.+||-|.--..++.+|.+. +.+.-+++...+|+-. ...+.. .....+.+. ++ ..+|+|+= ++++
T Consensus 7 mrVgliG~GaIG~~va~~l~~g~~~~~l~~V~~r~~~~~~~~~~~~~~~~~~~~~~~---l~--~~~DlVVE~A~~~a-- 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQ---LA--THADIVVEAAPASV-- 79 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHH---HH--HCCCEEEECCCHHH--
T ss_conf 779998867899999999975899818999992887888999873589874078899---60--18999998989899--
Q ss_pred HHHHHHHHHHCCCCEE
Q ss_conf 7489989860588067
Q gi|254780206|r 75 VNGISDALNAAGFKVF 90 (424)
Q Consensus 75 ~~gi~d~l~~~gi~v~ 90 (424)
+...+...-+.|..++
T Consensus 80 v~~~~~~~L~~G~dlv 95 (271)
T PRK13302 80 LRAIVEPVLAAGKKAI 95 (271)
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 9999999997599789
No 452
>PRK13113 consensus
Probab=44.33 E-value=22 Score=15.54 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHC-----CCEEEECCCHHH-HHHH---HHHHHHCCCCE-EECCHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 89899999998718-----979999795578-7489---98986058806-70106665552010235788876531011
Q gi|254780206|r 49 QNHSAIIHFCQEKH-----IDLVVVGPELPL-VNGI---SDALNAAGFKV-FGPSQRAAKLESSKSFAKKFCTKYGIPTA 118 (424)
Q Consensus 49 ~d~~~i~~~a~~~~-----iDlvivgpE~pL-~~gi---~d~l~~~gi~v-~Gp~~~aa~le~sK~~~K~~l~~~gIPt~ 118 (424)
.+.+.+.+++++.+ +-+++-+=-.|+ .-|+ +..+.+.|+.= +=|.-- .|-++.+ ++.++++||...
T Consensus 76 ~~~~~~~~~v~~~r~~~~~~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP---~eE~~~~-~~~~~~~~l~~I 151 (263)
T PRK13113 76 MTLDRTLDMVRAFRKEDDTTPIVMMGYYNPIYSRGVDRFLAEAKEAGIDGLIVVDLP---PEEDSEL-CLPAQAAGLNFI 151 (263)
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCC---HHHHHHH-HHHHHHCCCCEE
T ss_conf 838899999997512389988899831368988569999999877794369717999---7888999-999997798679
Q ss_pred CCCCCCCCHH-HHHHHH-CCCCEEEEEECCCCCCC
Q ss_conf 1122344011-111210-12420256304653430
Q gi|254780206|r 119 TYQHFSDPMK-AKQYVQ-NKSMPIVVKADGLCAGK 151 (424)
Q Consensus 119 ~~~~~~~~~e-a~~~~~-~~g~PvVVKp~~~agGk 151 (424)
....-++.++ +.+.++ .-||=++|=-.|..|.+
T Consensus 152 ~lvaPtt~~~Ri~~i~~~a~gFiY~Vs~~GvTG~~ 186 (263)
T PRK13113 152 RLATPTTDDRRLPKVLQNTSGFVYYVSITGITGAA 186 (263)
T ss_pred EEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 99479999999999983389848998345566877
No 453
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=44.08 E-value=22 Score=15.51 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=40.9
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCHHHHHHHH
Q ss_conf 8998865-88999999998589967899954983575117055128789899999998718979999--79557874899
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPELPLVNGIS 79 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~pL~~gi~ 79 (424)
||+|-++ ...|-|+..|++... ++.+.| .|..+.+.+ .+.++|.+|. ||-.|..+|..
T Consensus 2 ILiIDn~DsFT~ni~~~l~~~g~--~v~V~~-------------~d~~~~~~i----~~~~p~~IvlSpGPg~P~~~~~~ 62 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGA--DVLVKR-------------NDALTLADI----DALKPQKIVISPGPCTPDEAGIS 62 (187)
T ss_pred EEEEECCCCHHHHHHHHHHHCCC--EEEEEE-------------CCCCCHHHH----HHCCCCEEEECCCCCCHHHCCCC
T ss_conf 99996898189999999987799--799993-------------898999999----84298979999999995890840
Q ss_pred HHH-H--HCCCCEEECC
Q ss_conf 898-6--0588067010
Q gi|254780206|r 80 DAL-N--AAGFKVFGPS 93 (424)
Q Consensus 80 d~l-~--~~gi~v~Gp~ 93 (424)
-.+ + +..+|++|=.
T Consensus 63 ~~~i~~~~~~iPiLGIC 79 (187)
T PRK08007 63 LDVIRHYAGRLPILGVC 79 (187)
T ss_pred HHHHHHHCCCCCEEEEC
T ss_conf 46899753899889987
No 454
>PRK13187 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed
Probab=43.96 E-value=22 Score=15.50 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHCCCEEEE---CCCHHHHHH----HHHHHHHCCCCE
Q ss_conf 789899999998718979999---795578748----998986058806
Q gi|254780206|r 48 IQNHSAIIHFCQEKHIDLVVV---GPELPLVNG----ISDALNAAGFKV 89 (424)
Q Consensus 48 ~~d~~~i~~~a~~~~iDlviv---gpE~pL~~g----i~d~l~~~gi~v 89 (424)
+.-+|.++....-..||=++| |||.|+.+| +++.++++|+.-
T Consensus 85 V~TVEHLmAAL~glgIDN~~Ieidg~EvPIlDGSa~~fv~~i~~aGi~~ 133 (305)
T PRK13187 85 VRTVEHLLASLLACEIDHAIVELDAEEVPILDGSATPWVDAIRACGRVA 133 (305)
T ss_pred EEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 9619999999997598459999589978713686299999987448564
No 455
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=43.92 E-value=22 Score=15.50 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCEEEEC--------CCH---HHHHHHHHHHHHCC--CCEE---ECCHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 8999999987189799997--------955---78748998986058--8067---010666555201023578887653
Q gi|254780206|r 51 HSAIIHFCQEKHIDLVVVG--------PEL---PLVNGISDALNAAG--FKVF---GPSQRAAKLESSKSFAKKFCTKYG 114 (424)
Q Consensus 51 ~~~i~~~a~~~~iDlvivg--------pE~---pL~~gi~d~l~~~g--i~v~---Gp~~~aa~le~sK~~~K~~l~~~g 114 (424)
...++++++++++|+++++ |.. -|.....-.|...+ +|++ |-=-...+| ...+++|...|
T Consensus 37 L~~l~~~~~~e~~Da~lvAGDvFD~~~P~~ea~~L~~~~l~~L~~~~~R~p~Vvi~GNHD~~~~L----s~~~~Ll~~~~ 112 (275)
T TIGR00619 37 LDDLLEILKAEQVDALLVAGDVFDTANPPAEAQELFYAFLLNLSDANPRLPIVVISGNHDSADRL----SAAKKLLKELG 112 (275)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH----CHHHHHHHHCC
T ss_conf 99999999738998899700007889887999999999999998538961278704788877861----11677897709
Q ss_pred HHCCCC
Q ss_conf 101111
Q gi|254780206|r 115 IPTATY 120 (424)
Q Consensus 115 IPt~~~ 120 (424)
+-.+.+
T Consensus 113 ~~v~~~ 118 (275)
T TIGR00619 113 VFVVGK 118 (275)
T ss_pred CEEEEC
T ss_conf 544202
No 456
>PRK01581 speE spermidine synthase; Validated
Probab=43.71 E-value=22 Score=15.47 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=8.7
Q ss_pred ECCCCCEEEEECCCCCCHHHHH
Q ss_conf 1477510443326544115666
Q gi|254780206|r 283 FGDPECQAMMMRLESDILEILN 304 (424)
Q Consensus 283 ~GDPE~q~ilp~L~~dl~~il~ 304 (424)
|-||-...+=-+-...|+.++.
T Consensus 223 lPDP~n~~L~KLYS~eFY~Ll~ 244 (363)
T PRK01581 223 FPDPATELLSTLYTSELFARIA 244 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8999862466673599999999
No 457
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.68 E-value=22 Score=15.47 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=42.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEE---CCCHHHHHCCEEE-ECCCCCHHHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 9589988658899999999858996789995---4983575117055-12878989999999871897999979557874
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSI---PGNPGIAQHAQCV-AIDIQNHSAIIHFCQEKHIDLVVVGPELPLVN 76 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v~~~---pgN~g~~~~~~~~-~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~ 76 (424)
|||..++.+.-|- ..+|--. +++.-. ...|........+ ....-|.|.|+. .+||+|+..... -..
T Consensus 1 ~RIVsl~~~~te~--l~aLG~~---d~iVGv~~~~~~p~~~~~~p~vG~~~~p~~E~I~~----L~PDLVi~~~~~-~~~ 70 (245)
T cd01144 1 MRIVSLAPSATEL--LYALGLG---DQLVGVTDYCDYPPEAKKLPRVGGFYQLDLERVLA----LKPDLVIAWDDC-NVC 70 (245)
T ss_pred CEEEECCCHHHHH--HHHCCCC---CCEEEEECCCCCHHHHHCCCCCCCCCCCCHHHHHC----CCCCEEEEECCC-CHH
T ss_conf 9799968269999--9985999---80799857889948871488337888999999952----599647742687-768
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 899898605880670
Q gi|254780206|r 77 GISDALNAAGFKVFG 91 (424)
Q Consensus 77 gi~d~l~~~gi~v~G 91 (424)
...+.|++.|++++-
T Consensus 71 ~~~~~l~~~gi~v~~ 85 (245)
T cd01144 71 AVVDQLRAAGIPVLV 85 (245)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 899987604976998
No 458
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=43.54 E-value=23 Score=15.46 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHCCCCCEEEE
Q ss_conf 89999999985899678999
Q gi|254780206|r 11 REHALAWKIAQSPLLSELWS 30 (424)
Q Consensus 11 rEhAl~~~l~~s~~~~~v~~ 30 (424)
|+.+.-||-++...+--.||
T Consensus 15 ~~~~~~~k~~~GkkVVG~~C 34 (377)
T TIGR03190 15 HDYARDWKARTGGQVVATMC 34 (377)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999856986999808
No 459
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=43.25 E-value=23 Score=15.42 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=23.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEE-EEECCC
Q ss_conf 9589988658899999999858996789-995498
Q gi|254780206|r 1 MRVLLIGSGGREHALAWKIAQSPLLSEL-WSIPGN 34 (424)
Q Consensus 1 MkILviGsGgrEhAl~~~l~~s~~~~~v-~~~pgN 34 (424)
|||+|||.|+----+++.|+++.. +| +++.++
T Consensus 6 ~kI~IiGaGAiG~~~a~~L~~aG~--~V~li~r~~ 38 (313)
T PRK06249 6 PRIAIIGTGAIGGFYGAMLARAGF--DVHFLLRSD 38 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCH
T ss_conf 889999914999999999996699--569996755
No 460
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=43.24 E-value=23 Score=15.42 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=34.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE-CCCH
Q ss_conf 5899886588999999998589967899954983575117055128789899999998718979999-7955
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV-GPEL 72 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv-gpE~ 72 (424)
||.|||.|..-||=+.-|+.|.....+=+-+|-.. ...++.-.+...++++.++. -|+|++ -|+.
T Consensus 20 ~iaIIGYGsQG~ahalNlRDSGlnViiGlr~g~~s-~~kA~~dGf~V~~v~ea~k~-----ADvim~L~PDe 85 (338)
T COG0059 20 KVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS-WKKAKEDGFKVYTVEEAAKR-----ADVVMILLPDE 85 (338)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHCCCEEECHHHHHHC-----CCEEEEECCHH
T ss_conf 69999027087888742242487479985688724-89999669775139998522-----79999818654
No 461
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=43.16 E-value=22 Score=15.57 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=63.3
Q ss_pred EECCCCCHHHHHHHHHHHCCCEEE-ECC---CH-HHHHHHHHHHHHCCCCEEE-CCHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 512878989999999871897999-979---55-7874899898605880670-10666555201023578887653101
Q gi|254780206|r 44 VAIDIQNHSAIIHFCQEKHIDLVV-VGP---EL-PLVNGISDALNAAGFKVFG-PSQRAAKLESSKSFAKKFCTKYGIPT 117 (424)
Q Consensus 44 ~~i~~~d~~~i~~~a~~~~iDlvi-vgp---E~-pL~~gi~d~l~~~gi~v~G-p~~~aa~le~sK~~~K~~l~~~gIPt 117 (424)
.|+=..+.+++.+|++--+- |+| +|. |. ....--+..-++.|.|++= |..-. -.+-++.++++++++..+-.
T Consensus 39 SP~Ma~~~eE~~e~~kia~A-L~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvg-At~~R~~~~~~LL~~~~~~~ 116 (265)
T COG2145 39 SPVMADAPEEVEEFAKIADA-LLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVG-ATKFRTKFALELLAEVKPAA 116 (265)
T ss_pred CCHHCCCHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHHHHCCCCE
T ss_conf 82001487899999975070-38960469867899999999998752998786574578-66889999999997068747
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 11122344011111210124202563046534300023235677888788751445317778877520575234421577
Q gi|254780206|r 118 ATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGK 197 (424)
Q Consensus 118 ~~~~~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~ 197 (424)
-+. |..|....+. - ...+|||--....+++.+..+..-...+ .|++ +.|+ +++++||.
T Consensus 117 IrG----N~sEI~~Lag---~--------~~~~kGVDa~~~~~~~~~~a~~~A~~~~-~vvv---vTG~---vD~Isdg~ 174 (265)
T COG2145 117 IRG----NASEIAALAG---E--------AGGGKGVDAGDGAADAIEAAKKAAQKYG-TVVV---VTGE---VDYISDGT 174 (265)
T ss_pred EEC----CHHHHHHHHC---C--------CCCCCCCCCCCCHHHHHHHHHHHHHHHC-CEEE---EECC---EEEEEECC
T ss_conf 825----6999999733---0--------2667454666431469999999988759-1899---9778---24897087
Q ss_pred CCCCC
Q ss_conf 63103
Q gi|254780206|r 198 TAIPF 202 (424)
Q Consensus 198 ~~~~l 202 (424)
+++.+
T Consensus 175 ~~~~i 179 (265)
T COG2145 175 RVVVI 179 (265)
T ss_pred EEEEE
T ss_conf 69998
No 462
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.91 E-value=23 Score=15.39 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 58998865889999999985899
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPL 24 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~ 24 (424)
||.|||+|+---|||+-|.+...
T Consensus 8 KI~ViGaGawGTALA~~la~n~~ 30 (340)
T PRK12439 8 KVVVLGGGSWGTTVASICARRGP 30 (340)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
T ss_conf 28998969999999999995899
No 463
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=42.86 E-value=23 Score=15.38 Aligned_cols=90 Identities=19% Similarity=0.340 Sum_probs=41.7
Q ss_pred EEEEECCCHHH---H----HHHHHHHHCCCCCEEEEEC-CCHHHHH---------------------CCEE-EE--CCCC
Q ss_conf 58998865889---9----9999998589967899954-9835751---------------------1705-51--2878
Q gi|254780206|r 2 RVLLIGSGGRE---H----ALAWKIAQSPLLSELWSIP-GNPGIAQ---------------------HAQC-VA--IDIQ 49 (424)
Q Consensus 2 kILviGsGgrE---h----Al~~~l~~s~~~~~v~~~p-gN~g~~~---------------------~~~~-~~--i~~~ 49 (424)
||.|+=|||-- + +++..+.+.. .+||-+. |-.|... +..+ .. -+..
T Consensus 2 rIaIltsGG~~pGmNa~ir~vv~~a~~~g--~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGt~LgssR~~~~~~~~ 79 (338)
T cd00363 2 KIGVLTSGGDAPGMNAAIRGVVRSAIAEG--LEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTEE 79 (338)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC--CEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCEECCCCCCCCCCCHH
T ss_conf 59998688886688899999999999779--9999982577777079816299999987985698131676787667867
Q ss_pred CHHHHHHHHHHHCCC-EEEECCCHHH--HHHHHHHHHH--CCCCEEECC
Q ss_conf 989999999871897-9999795578--7489989860--588067010
Q gi|254780206|r 50 NHSAIIHFCQEKHID-LVVVGPELPL--VNGISDALNA--AGFKVFGPS 93 (424)
Q Consensus 50 d~~~i~~~a~~~~iD-lvivgpE~pL--~~gi~d~l~~--~gi~v~Gp~ 93 (424)
+.+.+++..++++|| |+++|-+..+ +.-+++.+.+ .+++|+|-+
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~~~~i~vvgIP 128 (338)
T cd00363 80 GRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLP 128 (338)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 7899999999829998999789269999999999888528995189841
No 464
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=42.72 E-value=23 Score=15.37 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=31.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEE--CCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 589988658899999999858996789995--4983575117055128789899999998718979999
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSI--PGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV 68 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~--pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv 68 (424)
+|-|||.|..-||=|.-|+.|.. +|.+. +|. ....++.--+...++++.+++ -|+|++
T Consensus 18 ~iaVIGYGsQG~AhAlNLrDSG~--~V~vglr~g~--s~~~A~~~Gf~v~~~~eA~~~-----aDvi~~ 77 (335)
T PRK13403 18 TVAVIGYGSQGHAQAQNLRDSGV--EVVVGVRPGK--SFEVAKADGFEVMSVSEAVRT-----AQVVQM 77 (335)
T ss_pred EEEEEEECCHHHHHHHHHHHCCC--CEEEEECCCC--CHHHHHHCCCEECCHHHHHHH-----CCEEEE
T ss_conf 79997567076898856476399--7799979985--699999879931679999985-----797875
No 465
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=42.61 E-value=23 Score=15.36 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=10.6
Q ss_pred HHHHHHHHHHCCCEEEECCC
Q ss_conf 99999998718979999795
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPE 71 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE 71 (424)
..|.++++++++|+|+.|.+
T Consensus 81 ~~la~~i~~~~~dlVl~g~~ 100 (181)
T cd01985 81 KALAALIKKEKPDLILAGAT 100 (181)
T ss_pred HHHHHHHHHCCCCEEEECCC
T ss_conf 99999998609989996041
No 466
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=42.59 E-value=23 Score=15.36 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=38.8
Q ss_pred HHHHHHHHHHCCCEEEECCC-HHHHHHHHHHHH-HCCCCEEECCHHHHHHHHCCHHHHHH-HHHHHHHCCCCCCCCCCHH
Q ss_conf 99999998718979999795-578748998986-05880670106665552010235788-8765310111122344011
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPE-LPLVNGISDALN-AAGFKVFGPSQRAAKLESSKSFAKKF-CTKYGIPTATYQHFSDPMK 128 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE-~pL~~gi~d~l~-~~gi~v~Gp~~~aa~le~sK~~~K~~-l~~~gIPt~~~~~~~~~~e 128 (424)
...+++..+.++|.++++.- .+. +.+.++ ..++|++|+...+.+ .+ +.. .++-+|=++.....+ .-
T Consensus 54 ~~~~~~l~~~g~d~iviaCnt~~~---~~~~~~~~~~ipvi~~~~a~~~-----a~-~~~~~~ri~vl~t~~t~~~--~~ 122 (212)
T pfam01177 54 LEAARRLAKAGADAIVIACNTAHA---LAGELREATDIPVIGIVEAALK-----AL-ALLGAKRVGVLATYGTIVS--GL 122 (212)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHH---HHHHHHHHCCCCEEEHHHHHHH-----HH-HHCCCCEEEEEECCHHHHH--HH
T ss_conf 999999986799999991765999---9999998729989854789999-----99-9718980899956424437--99
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 11121012420256
Q gi|254780206|r 129 AKQYVQNKSMPIVV 142 (424)
Q Consensus 129 a~~~~~~~g~PvVV 142 (424)
..+++++.|+.++.
T Consensus 123 ~~~~l~~~g~~~~~ 136 (212)
T pfam01177 123 YQELLAEAGIEVVA 136 (212)
T ss_pred HHHHHHHCCCCEEE
T ss_conf 99999975992785
No 467
>pfam04007 DUF354 Protein of unknown function (DUF354). Members of this family are around 350 amino acids in length. They are found in archaebacteria and have no known function.
Probab=42.50 E-value=23 Score=15.35 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHCCCEEEEC
Q ss_conf 98999999987189799997
Q gi|254780206|r 50 NHSAIIHFCQEKHIDLVVVG 69 (424)
Q Consensus 50 d~~~i~~~a~~~~iDlvivg 69 (424)
|.+.+.++.+..++++.++|
T Consensus 36 ~~~~~~~LL~~y~i~~~~iG 55 (335)
T pfam04007 36 KFGELPELLRSLGFQVKSIG 55 (335)
T ss_pred CCCHHHHHHHHCCCCEEEEC
T ss_conf 13519999997699769975
No 468
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=42.42 E-value=16 Score=16.55 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=9.2
Q ss_pred EEEEECCCHHHHHHHHHHHHH
Q ss_conf 999962898999999999985
Q gi|254780206|r 376 SATALGKTITESRELAYHMVE 396 (424)
Q Consensus 376 ~vv~~g~~l~eA~~~ay~~i~ 396 (424)
.|.++|+|+++|.+++..+++
T Consensus 25 gc~s~G~T~eea~~n~~eai~ 45 (73)
T COG1598 25 GCHSQGETLEEALQNAKEAIE 45 (73)
T ss_pred CHHHCCCCHHHHHHHHHHHHH
T ss_conf 733027889999999999999
No 469
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=42.29 E-value=24 Score=15.32 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCEEEECCC-HHHHHHHHHHHHHCCCCEEECCHHHH
Q ss_conf 99999998718979999795-57874899898605880670106665
Q gi|254780206|r 52 SAIIHFCQEKHIDLVVVGPE-LPLVNGISDALNAAGFKVFGPSQRAA 97 (424)
Q Consensus 52 ~~i~~~a~~~~iDlvivgpE-~pL~~gi~d~l~~~gi~v~Gp~~~aa 97 (424)
....+++.+.+++.++ ||- .+....+.+..++.++|++.|+....
T Consensus 56 ~~a~~li~~~~V~~iv-G~~~S~~~~a~~~~~~~~~vp~is~~~~~~ 101 (312)
T cd06333 56 TNARKLIEEDKVDAII-GPSTTPATMAVAPVAEEAKTPMISLAPAAA 101 (312)
T ss_pred HHHHHHHHHCCCEEEE-CCCCCHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 9999986517933986-687737788889999974986997478761
No 470
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=42.17 E-value=24 Score=15.31 Aligned_cols=22 Identities=18% Similarity=0.625 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 2878989999999871897999
Q gi|254780206|r 46 IDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 46 i~~~d~~~i~~~a~~~~iDlvi 67 (424)
++..+...+.++|++.++++..
T Consensus 73 ls~~~~~~L~~~~~~~gi~~~~ 94 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLS 94 (329)
T ss_pred CCHHHHHHHHHHHHHHCCEEEE
T ss_conf 8999999999999972992998
No 471
>pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase.
Probab=42.08 E-value=24 Score=15.30 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHCCCEEE-ECCCHHH
Q ss_conf 8989999999871897999-9795578
Q gi|254780206|r 49 QNHSAIIHFCQEKHIDLVV-VGPELPL 74 (424)
Q Consensus 49 ~d~~~i~~~a~~~~iDlvi-vgpE~pL 74 (424)
.+.+..++.++++++|+|| +|--.++
T Consensus 66 ~~v~~~~~~~~~~~~D~IIaiGGGS~i 92 (312)
T pfam00465 66 EEVDEAAAAAREEGADVIIAVGGGSVI 92 (312)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 999999999996499899980897612
No 472
>PRK08219 short chain dehydrogenase; Provisional
Probab=41.99 E-value=24 Score=15.29 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=37.7
Q ss_pred CEEE-EECCC-HHHHHHHHHHHHCCCCCEEEEECCCH-HHHH-----CCEEEECCCCCHHHHHHHHHHH-CCCEEE
Q ss_conf 9589-98865-88999999998589967899954983-5751-----1705512878989999999871-897999
Q gi|254780206|r 1 MRVL-LIGSG-GREHALAWKIAQSPLLSELWSIPGNP-GIAQ-----HAQCVAIDIQNHSAIIHFCQEK-HIDLVV 67 (424)
Q Consensus 1 MkIL-viGsG-grEhAl~~~l~~s~~~~~v~~~pgN~-g~~~-----~~~~~~i~~~d~~~i~~~a~~~-~iDlvi 67 (424)
||+- |.|++ |--.|+|..|.+.. ..+.+. .|. .... -...+..|..|.+.+.++.++. ++|..|
T Consensus 3 mKvalITGas~GIG~aia~~la~~g--~vv~~~-r~~~~l~~l~~~~~~~~~~~Dlt~~~~i~~~~~~~~~iD~lV 75 (226)
T PRK08219 3 MPTALITGASRGIGAAIARALARTH--TLLLAG-RPSERLDAVAARLGATTWPADLTDPEAIAAAVEPLDRLDVLV 75 (226)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEE-CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCEEE
T ss_conf 8999992846499999999999699--899998-988999999997099378605799999999999659988999
No 473
>PRK05086 malate dehydrogenase; Provisional
Probab=41.90 E-value=24 Score=15.28 Aligned_cols=32 Identities=41% Similarity=0.487 Sum_probs=21.7
Q ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCCCEEEEEC
Q ss_conf 95899886-588999999998-589967899954
Q gi|254780206|r 1 MRVLLIGS-GGREHALAWKIA-QSPLLSELWSIP 32 (424)
Q Consensus 1 MkILviGs-GgrEhAl~~~l~-~s~~~~~v~~~p 32 (424)
|||-|||. |.--.++++.|. +.+..+++.+..
T Consensus 1 mKV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~D 34 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYD 34 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 9899998998699999999982898777499975
No 474
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=41.87 E-value=24 Score=15.28 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 98999999987189799997955787489989860588067010666555201023578887653101111223440111
Q gi|254780206|r 50 NHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKA 129 (424)
Q Consensus 50 d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea 129 (424)
-.+.+++++++.++|++|.||- ..+| ..|+.| | ..+|..-++.|||+-..-...|.- +
T Consensus 68 a~~~il~mv~~~~pDlfiAGPA--FnAG------RYGvAC-G------------~i~kaV~e~l~IP~vTgMy~ENPG-v 125 (349)
T pfam07355 68 AVAEILEMLKEEKPDLFIAGPA--FNAG------RYGVAC-G------------TIAKAVKEELGIPAVTGMYVENPG-V 125 (349)
T ss_pred HHHHHHHHHHHCCCCEEEECCC--CCCC------CHHHHH-H------------HHHHHHHHHHCCCEEEECCCCCCC-H
T ss_conf 9999999998429998987663--2564------258889-9------------999999998699638641566850-7
Q ss_pred HHHHHCCCCEEEEEECCCCC
Q ss_conf 11210124202563046534
Q gi|254780206|r 130 KQYVQNKSMPIVVKADGLCA 149 (424)
Q Consensus 130 ~~~~~~~g~PvVVKp~~~ag 149 (424)
.-| + ..-++++...+|+
T Consensus 126 dm~-k--k~~yIv~t~nsAa 142 (349)
T pfam07355 126 DMF-K--KDVYIISTGNSAA 142 (349)
T ss_pred HHH-H--CCEEEEECCCHHH
T ss_conf 676-4--4428996584176
No 475
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=41.83 E-value=24 Score=15.28 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHH-------CCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 58998865889999999985899678999549835751-------17055128789899999998718979999795578
Q gi|254780206|r 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQ-------HAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPL 74 (424)
Q Consensus 2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~-------~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL 74 (424)
||.+||+|---.-++--+..-+...-+-++.-|...+. ..+-..++..+........+.-++ .+-=.-+.-+
T Consensus 19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi-~vT~D~~~i~ 97 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKI-AVTDDAELII 97 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCE-EEECCHHHHH
T ss_conf 998754541106799987506883699984246427889998735872000011116678899862867-9826535432
Q ss_pred HHHHHHHHHHC-CCCEEECCHHHHHHHHCCH--------------HHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHCCC
Q ss_conf 74899898605-8806701066655520102--------------357888765310--111122344011111210124
Q gi|254780206|r 75 VNGISDALNAA-GFKVFGPSQRAAKLESSKS--------------FAKKFCTKYGIP--TATYQHFSDPMKAKQYVQNKS 137 (424)
Q Consensus 75 ~~gi~d~l~~~-gi~v~Gp~~~aa~le~sK~--------------~~K~~l~~~gIP--t~~~~~~~~~~ea~~~~~~~g 137 (424)
..++.|..-.+ |+|-+|..-.-..|+..|. +.|+...+.|+- -.....=.+.-|+.+|++.+|
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa~a~G 177 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFASALG 177 (438)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECEEECHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 38860499976788530147579998567728999754032534889987765475885467897177878999998649
Q ss_pred CEEEEEECCCCCCCC----CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 202563046534300----023235677888788751445317778877520
Q gi|254780206|r 138 MPIVVKADGLCAGKG----VVVAATVDEATSAIDRCFQQINSTVIIEEYLEG 185 (424)
Q Consensus 138 ~PvVVKp~~~agGkG----V~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G 185 (424)
|++|. +||| -.+-.+.+...+..++ ..-..=.+-+|.+|
T Consensus 178 ~evv~------aGKGkNnpl~~~a~Pdt~~eeA~r---~~~n~~Ml~sF~DG 220 (438)
T COG4091 178 FEVVS------AGKGKNNPLNIDANPDTYEEEAKR---RNMNPRMLVSFQDG 220 (438)
T ss_pred CEEEE------CCCCCCCCCCCCCCCCHHHHHHHH---CCCCHHHHHHHHCC
T ss_conf 75886------157768987667898147888760---48986786543143
No 476
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=41.70 E-value=24 Score=15.26 Aligned_cols=29 Identities=28% Similarity=0.396 Sum_probs=0.0
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEE
Q ss_conf 958998865--88999999998589967899
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELW 29 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~ 29 (424)
|||.+||+| |==.||..|++.-...-.||
T Consensus 1 MkI~~iGGGPaGLYfailmK~~~P~~eI~V~ 31 (770)
T PRK08255 1 MRIVCIGGGPAGLYFGLLMKLRDPAHEVTVV 31 (770)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9499977875899999999865899974798
No 477
>PRK13112 consensus
Probab=41.67 E-value=24 Score=15.26 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCEEEECCCHHH--HHHHHHHHHHCC---CCEEECCHHHHHHHHCCHHHHHHH---HHHHHHCCCCCC
Q ss_conf 899999998718979999795578--748998986058---806701066655520102357888---765310111122
Q gi|254780206|r 51 HSAIIHFCQEKHIDLVVVGPELPL--VNGISDALNAAG---FKVFGPSQRAAKLESSKSFAKKFC---TKYGIPTATYQH 122 (424)
Q Consensus 51 ~~~i~~~a~~~~iDlvivgpE~pL--~~gi~d~l~~~g---i~v~Gp~~~aa~le~sK~~~K~~l---~~~gIPt~~~~~ 122 (424)
.+.-++-|++..+|.+++ |+-|. ...+...++++| |+.+-|+....||..--..++.|. ...|+--.+-..
T Consensus 112 ~e~F~~~~~~aGvdGvIi-pDLP~eE~~~~~~~~~~~~i~~I~lvaPtt~~eRi~~i~~~s~GFiY~Vs~~GvTG~~~~~ 190 (279)
T PRK13112 112 VERFLTDAKAAGVDGLIV-VDLPPEMDAELCIPAMKAGINFIRLATPTTDDKRLPKVLANTSGFVYYVSMTGITGSALAD 190 (279)
T ss_pred HHHHHHHHHHCCCCEEEE-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 999999999739987984-6999788899999998578346998258998999999985278808998356666766456
Q ss_pred CCCCHHHHHHHHCC-CCEEEE
Q ss_conf 34401111121012-420256
Q gi|254780206|r 123 FSDPMKAKQYVQNK-SMPIVV 142 (424)
Q Consensus 123 ~~~~~ea~~~~~~~-g~PvVV 142 (424)
.....+..+-+++. ..|++|
T Consensus 191 ~~~~~~~i~~ik~~t~~Pv~v 211 (279)
T PRK13112 191 TSAVGEAVARIKRHTDLPVCV 211 (279)
T ss_pred HHHHHHHHHHHHHHCCCCCEE
T ss_conf 488999999999717898767
No 478
>pfam03681 UPF0150 Uncharacterized protein family (UPF0150). This family of small proteins are uncharacterized. In the DNA-binding protein (CopG family) from Caulobacter vibrioides this domain is found next to a DNA binding helix-turn-helix domain pfam01402, which suggests that this is some kind of ligand binding domain. The structure of this domain suggests that these domains oligomerize and due to structural similarities may bind to RNA.
Probab=41.65 E-value=15 Score=16.83 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=0.0
Q ss_pred EEEEECCCHHHHHHHHHHHHH
Q ss_conf 999962898999999999985
Q gi|254780206|r 376 SATALGKTITESRELAYHMVE 396 (424)
Q Consensus 376 ~vv~~g~~l~eA~~~ay~~i~ 396 (424)
.+.+.|+|+++|++++.++++
T Consensus 23 g~~t~G~t~eEa~~n~~eai~ 43 (48)
T pfam03681 23 GCITQGETLEEALENAKEALE 43 (48)
T ss_pred CHHHHCCCHHHHHHHHHHHHH
T ss_conf 636524999999999999999
No 479
>PRK10444 UMP phosphatase; Provisional
Probab=41.62 E-value=24 Score=15.25 Aligned_cols=72 Identities=8% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCEEEECCCHHH--HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 979999795578--748998986058806701066655520102357888765310111122344011111210124
Q gi|254780206|r 63 IDLVVVGPELPL--VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKS 137 (424)
Q Consensus 63 iDlvivgpE~pL--~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g 137 (424)
+|.|+---..++ +....+.|++.|++++=-|-.+++ +..-..+.|.+.|++.+...++++...+.+++++..
T Consensus 8 lDGvl~~g~~~ipga~e~l~~L~~~g~~~~fvTNnss~---s~~~~~~kL~~~Gl~v~~~~i~ts~~~~~~~L~~~~ 81 (248)
T PRK10444 8 IDGVLMHDNVAVPGAAEFLHRILEKGLPLVLLTNYPSQ---TGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQE 81 (248)
T ss_pred CCCEEEECCEECCCHHHHHHHHHHCCCEEEEEECCCCC---CHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHCC
T ss_conf 75613889984869999999999879929999389999---999999999977999990739859999999998478
No 480
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=41.52 E-value=24 Score=15.24 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHCCC-EEEECCCHHH--HHHHHHHHHHCC--CCEEECCH
Q ss_conf 78989999999871897-9999795578--748998986058--80670106
Q gi|254780206|r 48 IQNHSAIIHFCQEKHID-LVVVGPELPL--VNGISDALNAAG--FKVFGPSQ 94 (424)
Q Consensus 48 ~~d~~~i~~~a~~~~iD-lvivgpE~pL--~~gi~d~l~~~g--i~v~Gp~~ 94 (424)
..|.+.+++..++++|| +.+||-+-.| +..+.+.+++.| |+|+|-+|
T Consensus 173 ~~d~~~iVd~L~~~gId~LfvIGGDGTlrgA~~I~~e~~~Rgl~I~VVGIPK 224 (486)
T PTZ00286 173 PQDPKEMVDTLVRMKINILFTVGGDGTQRGALKIYEEAKRRGENIAVFGVPK 224 (486)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9898999999998599989997884668899999999997178850664685
No 481
>PRK13189 peroxiredoxin; Provisional
Probab=41.44 E-value=19 Score=15.95 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred CEEEECCCHHH-HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf 79999795578-74899898605880670106665552010235788876531011112234401111121012420256
Q gi|254780206|r 64 DLVVVGPELPL-VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVV 142 (424)
Q Consensus 64 DlvivgpE~pL-~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVV 142 (424)
|++.+.|.+-. .+...+.|++.|..++|-|.++.. +.+.|.+..-++.|+ ...|-.++|...... ..|=++.
T Consensus 39 DFT~VCttEl~~~~~~~~eF~~~~~~vigiS~Ds~~--sH~aW~~~~~~~~G~-~i~fPliaD~~~~Is----~~yGvl~ 111 (215)
T PRK13189 39 DFTPVCTTEFVAFQKRYDEFRKLNTELIGLSIDQVF--SHIKWVEWIKEKLGV-EIEFPIIADDDGEIA----KKLGMIH 111 (215)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHH--HHHHHHHCHHHHCCC-CEEEEEEECCCCHHH----HHCCCCC
T ss_conf 789868459999999999998719779999468586--899985187874696-503447866726488----9749802
Q ss_pred EECCCCCCCCCCCHH
Q ss_conf 304653430002323
Q gi|254780206|r 143 KADGLCAGKGVVVAA 157 (424)
Q Consensus 143 Kp~~~agGkGV~i~~ 157 (424)
--.+..+-||+++++
T Consensus 112 ~~~~~~a~R~~FIID 126 (215)
T PRK13189 112 PGKGTNTVRAVFVVD 126 (215)
T ss_pred CCCCCCEEEEEEEEC
T ss_conf 588874674799999
No 482
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=41.13 E-value=24 Score=15.20 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 89999999871897999979557874899898605880670106665552010235788876531011112234401111
Q gi|254780206|r 51 HSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAK 130 (424)
Q Consensus 51 ~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~ 130 (424)
.+.+-+++.-..||.+++|| .|.-...|++ .....-.+..-=.-..+.++++|+| ......+.+++.
T Consensus 158 v~nldeI~av~GvD~ifiGp--------~DLs~slG~~---g~~~~pev~~ai~~v~~~~~~~gk~--~G~~~~~~~~a~ 224 (256)
T PRK10558 158 VDNVDAIAATEGVDGIFVGP--------SDLAAALGHL---GNASHPDVQKAIQHIFARAKAHGKP--SGILAPVEADAR 224 (256)
T ss_pred HHHHHHHHCCCCCCEEEECH--------HHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHCCCC--EEEECCCHHHHH
T ss_conf 98899996789988899885--------8999865999---9999979999999999999985998--799369999999
Q ss_pred HHHHCCCCEEEE
Q ss_conf 121012420256
Q gi|254780206|r 131 QYVQNKSMPIVV 142 (424)
Q Consensus 131 ~~~~~~g~PvVV 142 (424)
.+++. ||-+++
T Consensus 225 ~~~~~-G~~~i~ 235 (256)
T PRK10558 225 RYLEW-GATFVA 235 (256)
T ss_pred HHHHC-CCCEEE
T ss_conf 99976-998999
No 483
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=40.84 E-value=25 Score=15.17 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHH
Q ss_conf 8999999987189799997955787489989860588067010666555201023
Q gi|254780206|r 51 HSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSF 105 (424)
Q Consensus 51 ~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~ 105 (424)
.+...+++.+.+++.++-+--.+....+.+.+++.++|+++|..-+..+...+.+
T Consensus 63 ~~~~~~Li~~d~V~ai~G~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~ 117 (362)
T cd06343 63 VEQTRKLVESDEVFAMVGGLGTPTNLAVQKYLNEKKVPQLFPASGASKWNDPKPF 117 (362)
T ss_pred HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEECCCCC
T ss_conf 9999998840871386257687888986278886272699740463103205788
No 484
>PRK13599 putative peroxiredoxin; Provisional
Probab=40.82 E-value=20 Score=15.85 Aligned_cols=87 Identities=10% Similarity=0.134 Sum_probs=0.0
Q ss_pred CEEEECCCHHH-HHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf 79999795578-74899898605880670106665552010235788876531011112234401111121012420256
Q gi|254780206|r 64 DLVVVGPELPL-VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVV 142 (424)
Q Consensus 64 DlvivgpE~pL-~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVV 142 (424)
|++.+.+.+.. .+...+.|++.|..++|-|.++.. +.+.|.+..-+..|+ ...|-.+.|...-.. .-|-++.
T Consensus 39 DfTpvCttEl~~f~~~~~eF~~~n~~vigiS~Ds~~--sH~~W~~~i~~~~g~-~i~FPiiaD~~~~ia----~~yGml~ 111 (215)
T PRK13599 39 DFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVF--SHIKWVEWIKDNTNI-AIPFPVIADDLGKVS----NQLGMIH 111 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH--HHHHHHHHHHHHCCC-CCCEEEEECCCCHHH----HHHCCCC
T ss_conf 999856688999999999999759889998478788--999998538875697-751225515406599----9849826
Q ss_pred EECCCCCCCCCCCHH
Q ss_conf 304653430002323
Q gi|254780206|r 143 KADGLCAGKGVVVAA 157 (424)
Q Consensus 143 Kp~~~agGkGV~i~~ 157 (424)
...+.+.-||+++++
T Consensus 112 ~~~g~~t~R~~FiID 126 (215)
T PRK13599 112 PGKGTNTVRAVFIVD 126 (215)
T ss_pred CCCCCCEEEEEEEEC
T ss_conf 788875775899989
No 485
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=40.66 E-value=25 Score=15.15 Aligned_cols=99 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEE-------------------------
Q ss_conf 5751170551287898999999987189799997955787489989860588067-------------------------
Q gi|254780206|r 36 GIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVF------------------------- 90 (424)
Q Consensus 36 g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~------------------------- 90 (424)
|...+.-+..-+.......++...+.++|.+|+-| ..+.......+.+.++|++
T Consensus 29 gy~~ll~~s~~~~~~e~~~l~~l~~~~vdGiIi~~-~~~~~~~~~~l~~~~~PvV~i~~~~~~~~~~~V~~Dn~~~~~~a 107 (268)
T cd06270 29 GKHLIITAGHHSAEKEREAIEFLLERRCDALILHS-KALSDDELIELAAQVPPLVLINRHIPGLADRCIWLDNEQGGYLA 107 (268)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECHHHHHHHH
T ss_conf 99999995899989999999999965999999952-77998999999964998999867689998988983889999999
Q ss_pred ----------------ECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC---CCHHHHHHHHCC
Q ss_conf ----------------0106665552010235788876531011112234---401111121012
Q gi|254780206|r 91 ----------------GPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFS---DPMKAKQYVQNK 136 (424)
Q Consensus 91 ----------------Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~---~~~ea~~~~~~~ 136 (424)
||.......++-+.| ++.|+++|++......+. +.+.+.+.++++
T Consensus 108 ~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf-~~al~~~gl~~~~~~i~~~~~~~~~g~~~~~~l 171 (268)
T cd06270 108 TEHLIELGHRKIACITGPLTKEDARLRLQGY-RDALAEAGIALDESLIIEGDFTEEGGYAAMQEL 171 (268)
T ss_pred HHHHHHCCCCCEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 9999983998389845988883199999999-999998599978004761677678899988999
No 486
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=40.58 E-value=25 Score=15.14 Aligned_cols=123 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 958998865--889999999985899678999549835751170551287898999999987189799997955787489
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI 78 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi 78 (424)
|||||+-.- -|+ .|...|.+++.++-+..+. |-++.++.++++++|+++.--+-|-..|+
T Consensus 3 irVLIVDDs~~~R~-~l~~~L~~~~~~eVv~~A~-----------------nG~eAl~~~~~~~pDvVllDi~MP~mdGi 64 (345)
T PRK00742 3 IRVLVVDDSAFMRR-LLSEILNSDPDIEVVGTAR-----------------DGLEAVEKIKKLNPDVITLDVEMPVMDGI 64 (345)
T ss_pred CEEEEEECCHHHHH-HHHHHHHHCCCEEEEEEEC-----------------CHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 26999929889999-9999997289908999989-----------------99999999886099999983788999879
Q ss_pred HHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 989860588067010666555201023578887653101111223440--111112101242025630465343000232
Q gi|254780206|r 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDP--MKAKQYVQNKSMPIVVKADGLCAGKGVVVA 156 (424)
Q Consensus 79 ~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~--~ea~~~~~~~g~PvVVKp~~~agGkGV~i~ 156 (424)
.+.|++++++-+|.--....+.. +.+.++++.=-+-++-|| +++-.-..-
T Consensus 65 -------------------------e~l~~I~~~~p~pVimvSs~~~~~~~~~~~Al~~GA~D~i~KP---~~~~~~~~~ 116 (345)
T PRK00742 65 -------------------------EALRKIMALRPTPVVMVSSLTERGAEITLEALELGAVDFVPKP---FLGISEGMD 116 (345)
T ss_pred -------------------------HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC---CCCCCCCHH
T ss_conf -------------------------9999999758987799972255565999999975922489578---887653299
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3567788878875
Q gi|254780206|r 157 ATVDEATSAIDRC 169 (424)
Q Consensus 157 ~~~~e~~~~~~~~ 169 (424)
.-.+++...+..+
T Consensus 117 ~~~~~L~~ki~~~ 129 (345)
T PRK00742 117 AAAELLAEKVRAA 129 (345)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 487
>PRK08329 threonine synthase; Validated
Probab=40.41 E-value=25 Score=15.13 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEEC-CCHHHHH--------CCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHH
Q ss_conf 8999999998589967899954-9835751--------170551287898999999987189799997955787489989
Q gi|254780206|r 11 REHALAWKIAQSPLLSELWSIP-GNPGIAQ--------HAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDA 81 (424)
Q Consensus 11 rEhAl~~~l~~s~~~~~v~~~p-gN~g~~~--------~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~ 81 (424)
|.-+++-.-.++.....|.++- ||.|.+. +.-.+.+...-...-+..++.+.-++++++.+-.-+...+..
T Consensus 90 Rga~~~vs~a~~~g~~~vv~aSsGN~g~a~A~~aa~~Gi~~~I~vP~~a~~~K~~~~~~~GA~v~~v~g~~~~~~~~a~~ 169 (348)
T PRK08329 90 RGTYVTVAKLKEEGIKEVVIDSSGNAAISLAVYSLFEGIRVHVFVSYNARKEKISLLSSLGAELHFVEGDRMKVHEEAVK 169 (348)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHH
T ss_conf 89999999999759986999427988999999999849977999589988999999997098899985999999999999
Q ss_pred HHHC-CCCEEECCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 8605-8806701066655520102357888765310
Q gi|254780206|r 82 LNAA-GFKVFGPSQRAAKLESSKSFAKKFCTKYGIP 116 (424)
Q Consensus 82 l~~~-gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIP 116 (424)
+.+. |+....|...-..+|+-|..+.++++..+.|
T Consensus 170 ~~~~~g~~~~~~~~np~~ieGqkTia~Ei~eql~~p 205 (348)
T PRK08329 170 FSRRNNIPYVSHWLNPYFLEGTKTIAYEIYEQVGVP 205 (348)
T ss_pred HHHHCCCEECCCCCCHHHHHCCCCHHHHHHHHCCCC
T ss_conf 999809875376567466514662799999871999
No 488
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=40.39 E-value=18 Score=16.11 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=0.0
Q ss_pred EEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 66445448985570489998865147751044332654411566654201333321
Q gi|254780206|r 260 QGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNLHNTH 315 (424)
Q Consensus 260 ~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~L~~~~ 315 (424)
+|+||+| |+| ||+..|+|+|++++.--.+.++
T Consensus 132 rGiLYiD-----------EVN-------------LLdDhlVD~lLDaaA~G~n~VE 163 (688)
T TIGR02442 132 RGILYID-----------EVN-------------LLDDHLVDVLLDAAAMGVNRVE 163 (688)
T ss_pred CCEEEEE-----------EEC-------------CCCCHHHHHHHHHHHCCCEEEE
T ss_conf 8716785-----------200-------------1441477899998764800676
No 489
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD; InterPro: IPR013478 MauD appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulphide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulphide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded .; GO: 0030416 methylamine metabolic process.
Probab=40.21 E-value=25 Score=15.10 Aligned_cols=102 Identities=19% Similarity=0.319 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHH---------HHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf 999979557874899898605880670106665552010235---------78887653101111223440111112101
Q gi|254780206|r 65 LVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFA---------KKFCTKYGIPTATYQHFSDPMKAKQYVQN 135 (424)
Q Consensus 65 lvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~---------K~~l~~~gIPt~~~~~~~~~~ea~~~~~~ 135 (424)
|.+.+|.=|. +|.| +|++ +..|++|.-...+ |+|+++|.+---+|.+-...--+... .+
T Consensus 79 LMFTaPsCPv----C~KL----~PiI---kSia~~E~~~Vv~ISDG~~~EHr~FL~~H~L~~~~YVVSAE~GM~fQV-~K 146 (189)
T TIGR02661 79 LMFTAPSCPV----CDKL----LPII---KSIARAEEIDVVLISDGTPEEHRRFLKDHELGEERYVVSAEIGMAFQV-GK 146 (189)
T ss_pred EEECCCCCCH----HHHH----HHHH---HHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CC
T ss_conf 5443888853----2243----2789---888867253258972799279998864288887137886202210011-22
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 242025630465343000232356778887887514453177788775
Q gi|254780206|r 136 KSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYL 183 (424)
Q Consensus 136 ~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl 183 (424)
++|=|.+-++|.--.||.. +++|-++.-++. ....---+++|+
T Consensus 147 iPYGVLLD~~G~I~AKGL~--NTREHlESLlEa---~r~Gfa~lQ~y~ 189 (189)
T TIGR02661 147 IPYGVLLDQDGVIRAKGLT--NTREHLESLLEA---DREGFASLQQYL 189 (189)
T ss_pred CCCEEEECCCCEEEECCCC--CHHHHHHHHHHH---CCCCHHHHHHCC
T ss_conf 5622566799747742676--438889998862---003314653119
No 490
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=39.99 E-value=25 Score=15.08 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred CEEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEE--ECCCHHH-HH
Q ss_conf 958998865-8899999999858996789995498357511705512878989999999871897999--9795578-74
Q gi|254780206|r 1 MRVLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVV--VGPELPL-VN 76 (424)
Q Consensus 1 MkILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvi--vgpE~pL-~~ 76 (424)
+|||||-.| ...|-|++.|++-....+| +..+..+.+.+.++ |.+| +||..|- ..
T Consensus 3 ~kILiiD~~dsfT~ni~~~lr~lg~~~~v---------------~~~~~~~~~~~~~~------~~IIlSpGPg~p~~~~ 61 (191)
T PRK06895 3 TNLLIINNHDSFTFNLVDLIRKLGVPMKV---------------VNVEDLDLDEVENF------SHILISPGPDVPRAYP 61 (191)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEE---------------EECCCCCHHHHHCC------CEEEEECCCCCCCCCC
T ss_conf 86999969884899999999877996999---------------84784899898558------9699908999801052
Q ss_pred HHHHHHHHC--CCCEEE
Q ss_conf 899898605--880670
Q gi|254780206|r 77 GISDALNAA--GFKVFG 91 (424)
Q Consensus 77 gi~d~l~~~--gi~v~G 91 (424)
.+.+.++.. ++|++|
T Consensus 62 ~~~~~i~~~~~~~PILG 78 (191)
T PRK06895 62 QLFAMLERYYQQKSILG 78 (191)
T ss_pred HHHHHHHHHCCCCCEEE
T ss_conf 24999998606898789
No 491
>PRK01076 L-rhamnose isomerase; Provisional
Probab=39.86 E-value=26 Score=15.07 Aligned_cols=159 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 28789899999998718979999795578748998986058806701066655520102357888765310111122344
Q gi|254780206|r 46 IDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSD 125 (424)
Q Consensus 46 i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~ 125 (424)
+.+..++.-++||+++++.+=+ .|-. ++--..+.|+...-|.+.. |+|.-+|++. +
T Consensus 110 i~peHF~~Wv~wAk~~g~gLDF----NPT~--FsHp~~~dg~TLs~pD~~I----------R~FWIeH~k~--------~ 165 (419)
T PRK01076 110 IEPEHFKNWVEWAKANGLGLDF----NPTC--FSHPLSADGFTLSHPDKEI----------RQFWIDHCKA--------S 165 (419)
T ss_pred CCHHHHHHHHHHHHHCCCCCCC----CCCC--CCCCCCCCCCCCCCCCHHH----------HHHHHHHHHH--------H
T ss_conf 4888767899999973988887----8533--4787544678566987889----------9999999899--------9
Q ss_pred CHHHHHHHHCCCCEEEEE---ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCE--EEECCCCCCC
Q ss_conf 011111210124202563---04653430002323567788878875144531777887752057523--4421577631
Q gi|254780206|r 126 PMKAKQYVQNKSMPIVVK---ADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSF--FALCDGKTAI 200 (424)
Q Consensus 126 ~~ea~~~~~~~g~PvVVK---p~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv--~~i~dG~~~~ 200 (424)
..=+..|.+++|-|+|.- ||| .--.-|-...-+.-+.+.++++|...-++-..-..+++.-|.+ ++.+-|.+=.
T Consensus 166 R~I~~~fg~~lg~~cv~NiWiPDG-~KD~PvDr~~pR~Rl~~SLDeifa~~~d~~~~~daVEsKlFGIG~EsytVGShEF 244 (419)
T PRK01076 166 RRISAYFGEELGTPSVMNIWIPDG-MKDIPVDRLAPRQRLLESLDEIISEKLDPAHHIDAVESKLFGIGAESYTVGSNEF 244 (419)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 999999998739862155545887-7678621003899999989999851259877377887765124420366151899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 035200011135665444443443000012344322
Q gi|254780206|r 201 PFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQEL 236 (424)
Q Consensus 201 ~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~ 236 (424)
.|.-+.-.+.+.--| +|.|-|.-.+++.+
T Consensus 245 y~gYa~~~~~~~clD-------~GHfHPTE~vsDKi 273 (419)
T PRK01076 245 YMGYATSRQTALCLD-------AGHFHPTEVISDKI 273 (419)
T ss_pred HHHHHHHCCEEEEEE-------CCCCCCCCHHHHHH
T ss_conf 999998549189862-------68878732066788
No 492
>CHL00101 trpG anthranilate synthase component 2
Probab=39.84 E-value=26 Score=15.07 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEE--CCCHHHHHHHH
Q ss_conf 8998865-88999999998589967899954983575117055128789899999998718979999--79557874899
Q gi|254780206|r 3 VLLIGSG-GREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVV--GPELPLVNGIS 79 (424)
Q Consensus 3 ILviGsG-grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlviv--gpE~pL~~gi~ 79 (424)
||||-.| .-.|-|++.|++......| +..|..+.+.+.++ ++|.+|. ||..|..++..
T Consensus 2 ILiiD~~dsft~~i~r~lrelg~~~~v---------------~~~d~~~~~~i~~~----~p~gIILS~GPg~p~~~~~~ 62 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDLLV---------------CRNDEIDLSKIKNL----NPRHIIISPGPGHPRDSGIS 62 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEE---------------ECCCCCCHHHHHHC----CCCEEEECCCCCCHHHCCCC
T ss_conf 999978880899999999868998999---------------86998999999707----97989997999995785761
Q ss_pred HHHHHC---CCCEEE
Q ss_conf 898605---880670
Q gi|254780206|r 80 DALNAA---GFKVFG 91 (424)
Q Consensus 80 d~l~~~---gi~v~G 91 (424)
..+.+. ++|++|
T Consensus 63 ~~~~~~~~~~iPILG 77 (190)
T CHL00101 63 LDVISSYAPTIPILG 77 (190)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 689999714998789
No 493
>pfam03352 Adenine_glyco Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.
Probab=39.81 E-value=26 Score=15.06 Aligned_cols=35 Identities=34% Similarity=0.655 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9557874899898605880670106665552010235788876531
Q gi|254780206|r 70 PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGI 115 (424)
Q Consensus 70 pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gI 115 (424)
...|++.-++..|.+.|++.+|| .-+..||+..|+
T Consensus 132 ~~t~~S~~isk~LKkrGFkFvGp-----------t~~ysfmQA~G~ 166 (179)
T pfam03352 132 AKTPLSDAISKDLKKRGFKFVGP-----------TIVYAFMQAVGM 166 (179)
T ss_pred CCCHHHHHHHHHHHHCCCEEECH-----------HHHHHHHHHHCC
T ss_conf 88987899999998787946466-----------999999999688
No 494
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=39.77 E-value=26 Score=15.06 Aligned_cols=140 Identities=16% Similarity=0.077 Sum_probs=0.0
Q ss_pred EEEEECCC----HHHHHHHHHHHHCCCCCEEEEECCC---HHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECC---C
Q ss_conf 58998865----8899999999858996789995498---357511705512878989999999871897999979---5
Q gi|254780206|r 2 RVLLIGSG----GREHALAWKIAQSPLLSELWSIPGN---PGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGP---E 71 (424)
Q Consensus 2 kILviGsG----grEhAl~~~l~~s~~~~~v~~~pgN---~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgp---E 71 (424)
|+||||+. |--.=-+.+..++..---..++|.+ .-....-+.+.....+.+...-.-...++|-+++|| .
T Consensus 10 ~vliigGs~~~~GA~~laa~aAlr~GaGlv~v~~~~~~~~~~~~~~Pe~iv~~~~~~~~~~~~~~~~~~~aiviGpGlg~ 89 (254)
T cd01171 10 RVLVIGGSRGYTGAAYLAALAALRAGAGLVTVATPPEAAAVIKSYSPELMVHPLLETDIEELLELLERADAVVIGPGLGR 89 (254)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCC
T ss_conf 59999699999779999999999968691999968889999976298799943777445677765335878998278899
Q ss_pred HHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHH-------------HHHHHHCCCC
Q ss_conf 578748998986058806701066655520102357888765310111122344011-------------1112101242
Q gi|254780206|r 72 LPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMK-------------AKQYVQNKSM 138 (424)
Q Consensus 72 ~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~e-------------a~~~~~~~g~ 138 (424)
..-...+.+.+.....|++ ..+.+..+-......+. ..+.-|=||....|...-. ++++.+..+.
T Consensus 90 ~~~~~~~~~~~~~~~~p~V-iDAdaL~~l~~~~~~~~-~~~~~IlTPH~gE~~rL~~~~~~~~~~~~~~~~~~~a~~~~~ 167 (254)
T cd01171 90 DEEAAEILEKALAKDKPLV-LDADALNLLADEPSLIK-RYGPVVLTPHPGEFARLLGALVEEIQADRLAAAREAAAKLGA 167 (254)
T ss_pred CHHHHHHHHHHHHCCCCEE-ECCHHHHHHHHCHHHHC-CCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999984499858-86376786640835442-588978779989999983898013455699999999999798
Q ss_pred EEEEE
Q ss_conf 02563
Q gi|254780206|r 139 PIVVK 143 (424)
Q Consensus 139 PvVVK 143 (424)
-+|+|
T Consensus 168 ~vvLK 172 (254)
T cd01171 168 TVVLK 172 (254)
T ss_pred EEEEE
T ss_conf 99994
No 495
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=39.70 E-value=26 Score=15.05 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred CE-EEEECCCHHH-HHHHHHHHHCCCCCEEEEECCCHHHHHCCE-----EEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 95-8998865889-999999985899678999549835751170-----5512878989999999871897999
Q gi|254780206|r 1 MR-VLLIGSGGRE-HALAWKIAQSPLLSELWSIPGNPGIAQHAQ-----CVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 1 Mk-ILviGsGgrE-hAl~~~l~~s~~~~~v~~~pgN~g~~~~~~-----~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
|| |||.|+.|.= ..|+.+|.+.....-+.+-..+........ .+..|+++....++.+.+ ++|.|+
T Consensus 1 MKkILVTGgaGFIGs~Lv~~Ll~~~~~~V~~~d~~~~~~~~~~~~~~~~~~~gDi~~~~~~~~~~~~-~~D~V~ 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLTKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVK-KCDVVL 73 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHC-CCCEEE
T ss_conf 9889997574389999999999828978999979976367755799859997754469999997660-598897
No 496
>PRK06180 short chain dehydrogenase; Provisional
Probab=39.65 E-value=26 Score=15.05 Aligned_cols=93 Identities=22% Similarity=0.253 Sum_probs=0.0
Q ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHHHHC--------CEEEECCCCCHHHHHHHHHHH-----CCCE
Q ss_conf 958998865--8899999999858996789995498357511--------705512878989999999871-----8979
Q gi|254780206|r 1 MRVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGIAQH--------AQCVAIDIQNHSAIIHFCQEK-----HIDL 65 (424)
Q Consensus 1 MkILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~~~~--------~~~~~i~~~d~~~i~~~a~~~-----~iDl 65 (424)
||+-+|=++ |--.|+|..|.+... +|+..--|..-... ...+..|..|.+.+.+++++. .||.
T Consensus 4 ~KvvlITGassGIG~aiA~~l~~~G~--~Vi~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDv 81 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSAAARRDFEALHPGRALARVLDVTDFDAIDGVVADAEATVGPIDV 81 (277)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 98899917873999999999998799--9999989999999999867995799998379999999999999998199869
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHH
Q ss_conf 999795578748998986058806701066655520102357888
Q gi|254780206|r 66 VVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC 110 (424)
Q Consensus 66 vivgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l 110 (424)
.| +.+|+..+||-.+...=++.+.|.=+++
T Consensus 82 LV---------------NNAG~~~~~~~e~~~~~~~~~~~~vN~~ 111 (277)
T PRK06180 82 LV---------------NNAGYGHEGAIEESPLAEMRRQFEVNVF 111 (277)
T ss_pred EE---------------ECCCCCCCCCHHHCCHHHHHHHHHHHHH
T ss_conf 99---------------8997788886333999999999988537
No 497
>KOG1430 consensus
Probab=39.57 E-value=26 Score=15.04 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred EEEEECCC---HHHHHHHHHHHHCCCCCEEEEECCCHHH-----------HHCCEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 58998865---8899999999858996789995498357-----------511705512878989999999871897999
Q gi|254780206|r 2 RVLLIGSG---GREHALAWKIAQSPLLSELWSIPGNPGI-----------AQHAQCVAIDIQNHSAIIHFCQEKHIDLVV 67 (424)
Q Consensus 2 kILviGsG---grEhAl~~~l~~s~~~~~v~~~pgN~g~-----------~~~~~~~~i~~~d~~~i~~~a~~~~iDlvi 67 (424)
.+||+|++ ||. |+.+|.+-....++.++.-.|+. ....+..-.|..|...+.+-.+.. .|+
T Consensus 6 ~vlVtGG~GflG~h--lv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~---~Vv 80 (361)
T KOG1430 6 SVLVTGGSGFLGQH--LVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA---VVV 80 (361)
T ss_pred EEEEECCCCHHHHH--HHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHCCCC---EEE
T ss_conf 79998983378999--9999984566617999536775556514553346774368722300005566521576---078
Q ss_pred ECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHH---HHHHHHH----CCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 979557874899898605880670106665552010235788---8765310----111122344011111210124202
Q gi|254780206|r 68 VGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKF---CTKYGIP----TATYQHFSDPMKAKQYVQNKSMPI 140 (424)
Q Consensus 68 vgpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~---l~~~gIP----t~~~~~~~~~~ea~~~~~~~g~Pv 140 (424)
.+.+.+.+.|+.+..-+..+-+=..++.+ |.+.|++ |.-..++-.-++....=+..++|
T Consensus 81 -------------h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p- 146 (361)
T KOG1430 81 -------------HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYP- 146 (361)
T ss_pred -------------EECCCCCCCCCCCCHHHHEEECCHHHHHHHHHHHHHCCCEEEEECCCEEEECCEECCCCCCCCCCC-
T ss_conf -------------751656752023561252141405089999999982987899946742886883545577787875-
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56304653430002323567788878875
Q gi|254780206|r 141 VVKADGLCAGKGVVVAATVDEATSAIDRC 169 (424)
Q Consensus 141 VVKp~~~agGkGV~i~~~~~e~~~~~~~~ 169 (424)
.|.-+.-+ .++.+++.++.++
T Consensus 147 -~~~~d~Y~-------~sKa~aE~~Vl~a 167 (361)
T KOG1430 147 -LKHIDPYG-------ESKALAEKLVLEA 167 (361)
T ss_pred -CCCCCCCC-------HHHHHHHHHHHHH
T ss_conf -54554332-------5899999999985
No 498
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=39.56 E-value=26 Score=15.04 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred CE---EEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCHHH-------HHCCEEEECCCCCH-------HHHHHHHHHHC
Q ss_conf 95---899886588999999998589-96789995498357-------51170551287898-------99999998718
Q gi|254780206|r 1 MR---VLLIGSGGREHALAWKIAQSP-LLSELWSIPGNPGI-------AQHAQCVAIDIQNH-------SAIIHFCQEKH 62 (424)
Q Consensus 1 Mk---ILviGsGgrEhAl~~~l~~s~-~~~~v~~~pgN~g~-------~~~~~~~~i~~~d~-------~~i~~~a~~~~ 62 (424)
|| ||+=|+|.--.||..+..... ..+-+.+.-.|+.. ........++..++ +++.+..++++
T Consensus 1 Mkkiavl~SG~GSNl~aii~a~~~~~l~~~i~~Visn~~~a~~l~~A~~~~Ip~~~i~~~~~~~r~~~d~~i~~~L~~~~ 80 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEVVAVISDRPDAYGLERAEQAGIPTFVLDHKDFPSREAFDAALVEALDAYE 80 (200)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 97899999158044999999987599994899999789753665999975997699677667998999999999998649
Q ss_pred CCEEE
Q ss_conf 97999
Q gi|254780206|r 63 IDLVV 67 (424)
Q Consensus 63 iDlvi 67 (424)
+|+++
T Consensus 81 vDlIv 85 (200)
T PRK05647 81 PDLVV 85 (200)
T ss_pred CCEEE
T ss_conf 99999
No 499
>PTZ00317 malic enzyme; Provisional
Probab=39.51 E-value=26 Score=15.03 Aligned_cols=33 Identities=27% Similarity=0.644 Sum_probs=0.0
Q ss_pred HHHHHH---CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 887752---0575234421577631035200011135665444443443
Q gi|254780206|r 179 IEEYLE---GFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMG 224 (424)
Q Consensus 179 iEefl~---G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMG 224 (424)
|++.|. ..++.+.+++||+.++-| ||.| ++|||
T Consensus 134 i~~~l~nwp~~~v~~IVVTDGerILGl-----------GDlG--~~Gmg 169 (570)
T PTZ00317 134 IRQIMKNLRKENVDVIVITDGSRILGL-----------GDLG--ANGIG 169 (570)
T ss_pred HHHHHHHCCCCCCEEEEEECCCCEEEC-----------CCCC--CCCCC
T ss_conf 999997378467049999457211202-----------6666--78544
No 500
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=39.37 E-value=26 Score=15.02 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCCCEEEEC--------CCHHHHHHHHHHHHHC-CCCEE
Q ss_conf 98999999987189799997--------9557874899898605-88067
Q gi|254780206|r 50 NHSAIIHFCQEKHIDLVVVG--------PELPLVNGISDALNAA-GFKVF 90 (424)
Q Consensus 50 d~~~i~~~a~~~~iDlvivg--------pE~pL~~gi~d~l~~~-gi~v~ 90 (424)
+.+.+.+++++++|+.+++| ...-...-+++.|++. ++|++
T Consensus 39 ~~~~l~~~i~~~~~~~iviG~P~~~~g~~~~~~~~~f~~~l~~~~~i~v~ 88 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKERFNLPVV 88 (99)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999998499889974752489981999999999998517899889
Done!