HHsearch alignment for GI: 254780206 and conserved domain: pfam02786
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=99.90 E-value=4.1e-24 Score=194.22 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----C
Q ss_conf 10235788876531011112--2344011111210124202563046534300023235677888788751445-----3
Q gi|254780206|r 102 SKSFAKKFCTKYGIPTATYQ--HFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----N 174 (424)
Q Consensus 102 sK~~~K~~l~~~gIPt~~~~--~~~~~~ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~-----~ 174 (424)
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~~ 80 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGN 80 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98999999998698919987888799999999999859978997377789987512412778999999998751431699
Q ss_pred HHHHHHHHHHC-CCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 17778877520-57523442157763-10352000111356654444434430000123443222010000089999986
Q gi|254780206|r 175 STVIIEEYLEG-FEVSFFALCDGKTA-IPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGM 252 (424)
Q Consensus 175 ~~VliEefl~G-~E~Sv~~i~dG~~~-~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l 252 (424)
T Consensus 81 ~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~Pa~~l~~~~~e~i----~~~a~~~~ 149 (211)
T pfam02786 81 PQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSD-------QRRTQKSIEVAPSQTLTDEERQML----REAAVKIA 149 (211)
T ss_pred CCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEE-------ECCCCCEEEEECCCCCCHHHHHHH----HHHHHHHH
T ss_conf 8389974047765899999982799899999633225-------033584446817999999999999----99999987
Q ss_pred HHCCCEEEEEEEEEEEEEC--CEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 2046235664454489855--704899988651477510443326544115666542013
Q gi|254780206|r 253 QKEQNPFQGVLFAGLMITE--QGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGN 310 (424)
Q Consensus 253 ~~~~~~y~G~l~~~~m~t~--~gp~viE~N~R~GDPE~q~ilp~L~~dl~~il~~~~~g~ 310 (424)
T Consensus 150 ~~lg--~~G~~~vef~~~~~~~~~~~iEvNpR~~~~-~~~t~~~tg~~l~~~~~~~a~G~ 206 (211)
T pfam02786 150 RHLG--YVGAGTVEFALDPFSGEYYFIEMNTRLQVS-HALAEKATGYDLAKEAAKIALGY 206 (211)
T ss_pred HHCC--EECCCEEEEEEECCCCEEEEEECCCCCCCH-HHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 5264--423324789996799959999670896834-77889987948999999997799