HHsearch alignment for GI: 254780206 and conserved domain: pfam08442

Probab=98.88  E-value=1e-09  Score=90.20  Aligned_cols=95  Identities=26%  Similarity=0.316  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC-EEEEEECCCCCCC----CCCCHHHHHHHHHHHHHHHCCC------
Q ss_conf             3578887653101111223440111112101242-0256304653430----0023235677888788751445------
Q gi|254780206|r  105 FAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM-PIVVKADGLCAGK----GVVVAATVDEATSAIDRCFQQI------  173 (424)
Q Consensus       105 ~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~-PvVVKp~~~agGk----GV~i~~~~~e~~~~~~~~~~~~------  173 (424)
T Consensus         6 qaK~ll~~~gIpvp~g~~~~~~~ea~~~~~~l~~~~~VvKaQv~aGGRGKaGGVk~~~~~~ea~~~a~~~lg~~l~T~QT   85 (202)
T pfam08442         6 QAKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPEEAKEAAKEMLGKNLVTKQT   85 (202)
T ss_pred             HHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEEEEEC
T ss_conf             99999998599899915969999999999980998699987423588876773899789999999999872977875502


Q ss_pred             ------CHHHHHHHHHHC-CCCCEEEECCCCCC
Q ss_conf             ------317778877520-57523442157763
Q gi|254780206|r  174 ------NSTVIIEEYLEG-FEVSFFALCDGKTA  199 (424)
Q Consensus       174 ------~~~VliEefl~G-~E~Sv~~i~dG~~~  199 (424)
T Consensus        86 g~~G~~V~~vlvee~~~i~~E~Ylsi~~DR~~~  118 (202)
T pfam08442        86 GPEGKPVNKVLVEEAVDIAREYYLSIVLDRASR  118 (202)
T ss_pred             CCCCCEEEEEEEEECCCCCCEEEEEEEECCCCC
T ss_conf             788962338999851540100799999757778