RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine
ligase [Candidatus Liberibacter asiaticus str. psy62]
(424 letters)
>gnl|CDD|179154 PRK00885, PRK00885, phosphoribosylamine--glycine ligase;
Provisional.
Length = 420
Score = 667 bits (1723), Expect = 0.0
Identities = 212/421 (50%), Positives = 290/421 (68%), Gaps = 6/421 (1%)
Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQE 60
M+VL+IGSGGREHALAWK+AQSPL+ +++ PGN G A A+ V ID+ + A++ F +E
Sbjct: 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGTALLAENVVIDVTDIEALVAFAKE 60
Query: 61 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120
+ IDL VVGPE PLV GI DA AAG +FGP++ AA+LE SK+FAK F +YGIPTA Y
Sbjct: 61 EGIDLTVVGPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAY 120
Query: 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQIN-----S 175
+ F+D +A Y+ K PIVVKADGL AGKGVVVA T++EA +A+D +
Sbjct: 121 ETFTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGA 180
Query: 176 TVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQE 235
V+IEE+L+G E SFFA DG+ +P TA+DHKR DGD GPNTGGMGA SPA +++E
Sbjct: 181 RVVIEEFLDGEEASFFAFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEE 240
Query: 236 LYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRL 295
+ V+++II PT++GM E P+ GVL+AGLMIT+ GP +IE+N RFGDPE Q ++ RL
Sbjct: 241 VVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDGPKVIEFNARFGDPETQVVLPRL 300
Query: 296 ESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQL 355
+SD++E+L + G L + W A+ VV+A KGYP +Y G +I+ + ++
Sbjct: 301 KSDLVELLLAAADGKLDEVELEWDDRAAVGVVLAAKGYPGDYRKGDVITGLE-AADADKV 359
Query: 356 FHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKE 415
FHAGT + + L NGGRVL TALG T+ E+++ AY ++ ID+ G++R DIG + +
Sbjct: 360 FHAGTKLEDGKLVTNGGRVLCVTALGDTLEEAQKRAYAALDKIDFDGGFYRRDIGYRALK 419
Query: 416 R 416
R
Sbjct: 420 R 420
>gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase.
Length = 434
Score = 531 bits (1370), Expect = e-151
Identities = 215/421 (51%), Positives = 279/421 (66%), Gaps = 14/421 (3%)
Query: 4 LLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQH--AQCVA-IDIQNHSAIIHFCQE 60
L+IG GGREHAL + + +SP ++ PGN GIA A CV +DI + +A+I FC++
Sbjct: 1 LVIGGGGREHALCYALQRSPSCDAVFCAPGNAGIATSGDATCVPDLDISDSAAVISFCRK 60
Query: 61 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120
+ LVVVGPE PLV G++D L AG FGPS AA LE SK+F K C KY IPTA Y
Sbjct: 61 WGVGLVVVGPEAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKY 120
Query: 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAID-----RCFQQINS 175
+ F+DP AK+Y++ + PIVVKADGL AGKGVVVA T++EA A+D F S
Sbjct: 121 ETFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGS 180
Query: 176 TVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQE 235
V++EE+L+G E SFFAL DG+ AIP +A+DHKR+ DGD GPNTGGMGA SPA ++ E
Sbjct: 181 EVVVEEFLDGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPE 240
Query: 236 LYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG--PYLIEYNVRFGDPECQAMMM 293
L S V++ II PT++GM E F GVL+AGLMI ++ P L+EYNVRFGDPECQ +MM
Sbjct: 241 LESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMM 300
Query: 294 RLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKI---PQNT 350
RLESD+ ++L + G L + W + A+ VV+A+ GYP Y GT+I +
Sbjct: 301 RLESDLAQVLLAACKGELSGVSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEAEAVA 360
Query: 351 GTTQLFHAGTAI-VNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDI 409
++FHAGTA+ + N+ A GGRVL TA GK I E+R AY V+ IDW G++R DI
Sbjct: 361 PGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEARARAYDAVDQIDWPGGFFRRDI 420
Query: 410 G 410
G
Sbjct: 421 G 421
>gnl|CDD|162082 TIGR00877, purD, phosphoribosylamine--glycine ligase. This enzyme
appears as a monofunctional protein in prokaryotes but
as part of a larger, multidomain protein in eukaryotes.
Length = 423
Score = 527 bits (1359), Expect = e-150
Identities = 212/420 (50%), Positives = 293/420 (69%), Gaps = 10/420 (2%)
Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQC--VAIDIQNHSAIIHFC 58
M+VL+IG+GGREHALAWK+AQSPL+ ++ PGN G A+ A+ VAI I + A++ F
Sbjct: 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAISITDIEALVEFA 60
Query: 59 QEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTA 118
++K IDL V+GPE PLV G+ DAL AG VFGP++ AA+LE SK+FAK F +YGIPTA
Sbjct: 61 KKKKIDLAVIGPEAPLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTA 120
Query: 119 TYQHFSDPMKAKQYVQNKSMP-IVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ----I 173
Y+ F+DP +A Y+Q K P IVVKADGL AGKGV+VA T +EA A++ +Q
Sbjct: 121 EYEVFTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDA 180
Query: 174 NSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMS 233
V+IEE+L+G EVS A DGKT IP A+DHKR +GD GPNTGGMGA SPA +
Sbjct: 181 GERVVIEEFLDGEEVSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFT 240
Query: 234 QELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMM 293
+E+ + ++I+ PT++GM+KE P++GVL+AGLM+T++GP ++E+N RFGDPE QA++
Sbjct: 241 EEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEGPKVLEFNCRFGDPETQAVLP 300
Query: 294 RLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIP--QNTG 351
L+SD+LE+ + V G L + + A+TVV+A++GYP +Y G I+ P + G
Sbjct: 301 LLKSDLLEVCLAAVEGKLDEVELRFDNRAAVTVVLASEGYPGDYRKGDPITGEPLIEAEG 360
Query: 352 TTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411
++FHAGT N L +GGRVL+ TALGK++ E+RE AY VE I ++ ++R+DIG
Sbjct: 361 -VKVFHAGTKQDNGKLVTSGGRVLAVTALGKSLEEARERAYEAVEYIKFEGMFYRKDIGF 419
>gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase;
Provisional.
Length = 426
Score = 355 bits (912), Expect = 1e-98
Identities = 169/419 (40%), Positives = 250/419 (59%), Gaps = 10/419 (2%)
Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVA--IDIQNHSAIIHFC 58
++VLLIGSGGRE A+A+ + +S LLSEL PGN G A I + S++ F
Sbjct: 5 LKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFL 64
Query: 59 QEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTA 118
+ DL+VVGPE PLV G +D G FGP A++E SK FAK + IPTA
Sbjct: 65 KSNPFDLIVVGPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTA 124
Query: 119 TYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQ-----QI 173
+Y+ F++ + Y++++ +PIV+KADGL AGKGV VA A A+ F+ Q
Sbjct: 125 SYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQS 184
Query: 174 NSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMS 233
+ V+IEE++EG E S FA+ DG + A+DHKR DGD GPNTGGMGA PA ++
Sbjct: 185 GNQVVIEEFMEGQEASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVIT 244
Query: 234 QELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQAMM 292
+ + V ++I P + +K+ +P++G+L+AGLMI+ +G P ++E+N RFGDPE Q ++
Sbjct: 245 EAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVL 304
Query: 293 MRLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTG- 351
L+ D+LE+L + G + ++ K A VV+A +GYP+ Y I +P+ +G
Sbjct: 305 AMLDGDLLELLYAASTGKIKVVNLKLKQGAAAVVVLAAQGYPDSYEKN-IPLNLPETSGQ 363
Query: 352 TTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIG 410
LFHAGT + + ++GGR+L A GK + +S + AY +E I ++R+DIG
Sbjct: 364 NVVLFHAGTKKKDGKVFSSGGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKTFYRKDIG 422
>gnl|CDD|184328 PRK13790, PRK13790, phosphoribosylamine--glycine ligase;
Provisional.
Length = 379
Score = 321 bits (825), Expect = 2e-88
Identities = 148/368 (40%), Positives = 217/368 (58%), Gaps = 9/368 (2%)
Query: 46 IDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSF 105
I +H AI+ F +++++D VV+GPE PL++G++D L A GFKVFGP+++AA++E SK F
Sbjct: 11 ISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLF 70
Query: 106 AKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSA 165
AKK KY IPTA Y+ A Y++N +P+VVK DGL AGKGV++A T++ A SA
Sbjct: 71 AKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSA 130
Query: 166 IDRCF-QQINSTVIIEEYLEGFEVSFFALCDGKTAIPF-TTARDHKRIHDGDIGPNTGGM 223
I+ + + TV+ E +LEG E S +G A+PF A+DHKR D D GPNTGGM
Sbjct: 131 IEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGM 190
Query: 224 GACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRF 283
GA P +S ++ + I P + M E F GVL+ G ++T+ GP +IE+N RF
Sbjct: 191 GAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARF 250
Query: 284 GDPECQAMMMRLESDILE-ILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTI 342
GDPE Q ++ R+ESD+++ I++ T WK E + V++A+KGYP+ Y G
Sbjct: 251 GDPEAQVLLSRMESDLMQHIIDL---DEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHK 307
Query: 343 ISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKH 402
+S N F +G + +GGRV+ A G + +++ AY V I H
Sbjct: 308 VSGFDLN---ENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQIQSDH 364
Query: 403 GYWREDIG 410
++R DI
Sbjct: 365 LFYRHDIA 372
>gnl|CDD|180256 PRK05784, PRK05784, phosphoribosylamine--glycine ligase;
Provisional.
Length = 486
Score = 235 bits (601), Expect = 2e-62
Identities = 138/451 (30%), Positives = 215/451 (47%), Gaps = 50/451 (11%)
Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPG--NPGIAQHA-----QCVAIDIQNHSA 53
M+VLL+G G REHALA + +S +++++ NPGI + +I +
Sbjct: 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEE 60
Query: 54 IIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKY 113
+ +E + DLVV+GPE PL G++D L GF VFG S + A++E SK +A++ KY
Sbjct: 61 VKKVAKEVNPDLVVIGPEEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKY 120
Query: 114 GIP-TATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAA--------TVDEA-T 163
IP Y+ F D +A ++++ + +K GKGV V A EA T
Sbjct: 121 SIPGRLRYKVFYDVEEAAKFIEYGG-SVAIKPARQAGGKGVKVIADLQAYLSQEKREALT 179
Query: 164 SAIDRCFQQINS------TVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIG 217
+++ + +++EE ++G E + L DG+T IP A+D+ ++ IG
Sbjct: 180 KSVNDIKEGSAYYKDVEPKILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIG 239
Query: 218 PNTGGMGACSPALG----MSQELYSTVIQKIILPTIEGMQKEQN-PFQGVLFAGLMITE- 271
P TGGMG+ S +++E Y + +I+ TI+ + KE + GV+ +M+TE
Sbjct: 240 PETGGMGSISGPGELLPFINEEEYEEAV-EIVKRTIDAIYKETGERYVGVISGQMMLTEL 298
Query: 272 QGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATK 331
GP +IEY RFGDPE ++ R+ESD E+ G L I + E ++ +A
Sbjct: 299 WGPTVIEYYSRFGDPEASNIIPRIESDFGELFELAATGKLSKAKIKFNEEPSVVKAIAPL 358
Query: 332 GYPE--EYPHGTIISKIPQN----TGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTIT 385
GYP + G I + + G +F + L G R L A+GK
Sbjct: 359 GYPLSRDLASGRRI-VVDLDKIKEEGCL-VFFGSVELEGGQLITKGSRALEIVAIGKDFE 416
Query: 386 ESRELAYHMVENI------DWKHGYWREDIG 410
E AY +E D K +R DIG
Sbjct: 417 E----AYEKLERCISYVSSDTKL-IYRTDIG 442
>gnl|CDD|102357 PRK06395, PRK06395, phosphoribosylamine--glycine ligase;
Provisional.
Length = 435
Score = 198 bits (504), Expect = 3e-51
Identities = 143/440 (32%), Positives = 225/440 (51%), Gaps = 32/440 (7%)
Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPG--NPGIAQHA-QCVAIDIQNHSAIIHF 57
M+V+L+GSGGRE A+A I +S + L+S+ G NP I + + + + D +++ I F
Sbjct: 3 MKVMLVGSGGREDAIARAIKRSG--AILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDF 60
Query: 58 CQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP- 116
+ ++D+V VGP+ L + + L G KV P+ AA +E+SK F + ++ IP
Sbjct: 61 ALKNNVDIVFVGPDPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPG 120
Query: 117 -TATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAA----TVDEATS-AIDRCF 170
FS+ A+ Y+ + + VK GL GKGV V +VDEA AI+
Sbjct: 121 NINFNACFSEKDAARDYITSMK-DVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIE--I 177
Query: 171 QQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSP-- 228
+ V+IE+ + G E S A DGK +D+KR ++GD GPNTGGMG+ S
Sbjct: 178 LDRDGVVLIEKKMTGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRD 237
Query: 229 -ALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPE 287
+L + + I+ I M+ E NPF+G+++ M T G +IE N RF DPE
Sbjct: 238 FSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNGVKVIEINARFADPE 297
Query: 288 CQAMMMRLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTI-ISKI 346
++ L+SD +E L+ GNL+ + + L +V GY E G I I K
Sbjct: 298 GINVLYLLKSDFVETLHQIYSGNLNGSIKFERKATVLKYIVPP-GYGENPSPGRIKIDKT 356
Query: 347 PQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVEN-IDWKHG-- 403
++ + +++A + N++ +G R L+ A G +I E A V++ ++ HG
Sbjct: 357 IFDSN-SDVYYASVSGTLNDVKTSGSRSLAIIAKGDSIPE----ASEKVDSDLNAVHGSY 411
Query: 404 YWREDIG----LQKKERNVK 419
Y R DIG ++KK +N K
Sbjct: 412 YVRRDIGDSDFIRKKIKNAK 431
>gnl|CDD|183732 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein;
Provisional.
Length = 326
Score = 57.6 bits (140), Expect = 6e-09
Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 32/238 (13%)
Query: 53 AIIHFCQEKHIDLVVVG--PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC 110
++ C+++ IDL++ PELPL+ D G KV S+ ++ + K +F
Sbjct: 60 RLLDICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFL 119
Query: 111 TKYGIPTA-TYQHFSDPMKAKQYVQNK-SMPIVVKADGLCAGKGVVVAATVDEATSAIDR 168
+ GIPT +Y S + + P+ VK A GV +E ++
Sbjct: 120 KENGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEY 179
Query: 169 CFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGM--GAC 226
+II+E++EG E + LCD + R KRI + G
Sbjct: 180 -----VPNLIIQEFIEGQEYTVDVLCDLNGEVISIVPR--KRI----------EVRAGET 222
Query: 227 SPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFG 284
S + TV + E + + G L +T+ PYL E N RFG
Sbjct: 223 SKGV--------TVKDPELFKLAERLAEALGAR-GPLNIQCFVTDGEPYLFEINPRFG 271
>gnl|CDD|181524 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 49.2 bits (118), Expect = 2e-06
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNK 136
+ A AG GPS + SK AKK K G+P T + D +AK+ +
Sbjct: 92 AKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEI 151
Query: 137 SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI------NSTVIIEEYLE 184
P+++KA G G+ V + +E AI+ Q I +STV IE+YLE
Sbjct: 152 GYPVIIKASAGGGGIGMRVVYSEEELEDAIEST-QSIAQSAFGDSTVFIEKYLE 204
>gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2.
This enzyme is an alternative to PurN (TIGR00639).
Length = 380
Score = 47.8 bits (114), Expect = 6e-06
Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 25/228 (10%)
Query: 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSI---PGNPGIAQHAQCVAIDIQNHSAIIH 56
RVLL+GSG G+E A I L E+ ++ P + + I++ + A+
Sbjct: 1 RVLLLGSGELGKEVA----IEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRA 56
Query: 57 FCQEKHIDLVVVGPELPLVNGIS-DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTK-YG 114
+ + D +V PE+ + + L G+ V P+ RA KL ++ ++ + G
Sbjct: 57 VIEREKPDYIV--PEIEAIATDALFELEKEGYFVV-PNARATKLTMNREGIRRLAAEELG 113
Query: 115 IPTATYQHFSDPMKA-KQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ- 172
+PT+ Y F+D + ++ V+ P VVK +GKG V ++ A + +
Sbjct: 114 LPTSRY-MFADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGA 172
Query: 173 --INSTVIIEEYLE-GFEVSFFALC--DGKTAIPFTTARDHKRIHDGD 215
VI+EE+++ +E++ + DG T F H++I DGD
Sbjct: 173 RGGAGRVIVEEFIDFDYEITLLTVRHVDGNTT--FCAPIGHRQI-DGD 217
>gnl|CDD|179427 PRK02471, PRK02471, bifunctional glutamate--cysteine
ligase/glutathione synthetase; Provisional.
Length = 752
Score = 46.5 bits (111), Expect = 1e-05
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 103 KSFAKKFCTKYGIPTATYQHFSDPMKAK---QYVQNKSMPIVVKADGLCAGKGVVV---A 156
K KK + G P F+ +A +K IVVK G G+ +
Sbjct: 489 KVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFADK--AIVVKPKSTNFGLGISIFKEP 546
Query: 157 ATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKT 198
A++++ A++ F++ +S+V++EE++ G E FF L DGK
Sbjct: 547 ASLEDYEKALEIAFRE-DSSVLVEEFIVGTEYRFFVL-DGKV 586
>gnl|CDD|162248 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase. but a
number of antibiotic resistance proteins score above the
trusted cutoff of this model.
Length = 315
Score = 44.2 bits (105), Expect = 6e-05
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 82 LNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY------QHFSDPMKAKQYVQN 135
L G G A+ L K K G+PT Y + +D ++ +Q +
Sbjct: 85 LELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEP 144
Query: 136 KSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVS 189
P++VK + GV + +E +A+D F+ + V++E++++G E+
Sbjct: 145 LGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE-YDEEVLVEQFIKGRELE 197
>gnl|CDD|130502 TIGR01435, glu_cys_lig_rel, glutamate--cysteine
ligase/gamma-glutamylcysteine synthetase, Streptococcus
agalactiae type. gamma-glutamyltripeptides of the form
gamma-Glu-Cys-X(aa). The N-terminal region is similar to
proteobacterial glutamate-cysteine ligase. The
C-terminal region is homologous to cyanophycin
synthetase of cyanobacteria and, more distantly, to
D-alanine-D-alanine ligases. Members of this family are
found in Listeria and Enterococcus, Gram-positive
lineages in which glutathione is produced (see
PUBMED:8606174), and in Pasteurella multocida, a
Proteobacterium. In Clostridium acetobutylicum, adjacent
genes include separate proteins rather than a fusion
protein.
Length = 737
Score = 40.7 bits (95), Expect = 7e-04
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 102 SKSFAKKFCTKYGIPTATYQHFSDPMKAKQ-YVQNKSMPIVVKADGLCAGKGVVV---AA 157
+K KK + G FS A + + ++ IVVK G G+ +
Sbjct: 475 NKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGF 534
Query: 158 TVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAI 200
T+++ A++ F + +S+VIIEE+L G E FF L D A+
Sbjct: 535 TLEDFQEALNIAFSE-DSSVIIEEFLPGTEYRFFVLNDKVEAV 576
>gnl|CDD|148851 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus. This
family represents the C-terminal, catalytic domain of
the D-alanine--D-alanine ligase enzyme EC:6.3.2.4.
D-Alanine is one of the central molecules of the
cross-linking step of peptidoglycan assembly. There are
three enzymes involved in the D-alanine branch of
peptidoglycan biosynthesis: the pyridoxal
phosphate-dependent D-alanine racemase (Alr), the
ATP-dependent D-alanine:D-alanine ligase (Ddl), and the
ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Length = 201
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 114 GIPTATYQHFS----DPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRC 169
GIP A + + ++ + P+ VK L + G+ + +E SAI+
Sbjct: 6 GIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEA 65
Query: 170 FQQINSTVIIEEYLEGFEV 188
FQ ++ V+IEE +EG E+
Sbjct: 66 FQY-DNKVLIEEAIEGREI 83
>gnl|CDD|162228 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK
protein. Phosphoribosylaminoimidazole carboxylase is a
fusion protein in plants and fungi, but consists of two
non-interacting proteins in bacteria, PurK and PurE.
This model represents PurK, N5-carboxyaminoimidazole
ribonucleotide synthetase, which hydrolyzes ATP and
converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR.
In the presence of high concentrations of bicarbonate,
PurE is reported able to convert AIR to CAIR directly
and without ATP.
Length = 352
Score = 38.9 bits (91), Expect = 0.002
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP 139
+ L A G K+F PS A + + K+F K G+P + D + +Q P
Sbjct: 77 EKLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELGFP 135
Query: 140 IVVKA-DGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE-GFEVS 189
+V+KA G G+G + A + I+EE++ E+S
Sbjct: 136 VVLKARTGGYDGRGQYRIRNEADLPQAAKELGDR---ECIVEEFVPFERELS 184
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
subunit. This model represents the biotin carboxylase
subunit found usually as a component of acetyl-CoA
carboxylase. Acetyl-CoA carboxylase is designated EC
6.4.1.2 and this component, biotin carboxylase, has its
own designation, EC 6.3.4.14. Homologous domains are
found in eukaryotic forms of acetyl-CoA carboxylase and
in a number of other carboxylases (e.g. pyruvate
carboxylase), but seed members and trusted cutoff are
selected so as to exclude these. In some systems, the
biotin carboxyl carrier protein and this protein (biotin
carboxylase) may be shared by different
carboxyltransferases. However, this model is not
intended to identify the biotin carboxylase domain of
propionyl-coA carboxylase. The model should hit the full
length of proteins, except for chloroplast transit
peptides in plants. If it hits a domain only of a longer
protein, there may be a problem with the identification.
Length = 449
Score = 38.6 bits (90), Expect = 0.003
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 86 GFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQH--FSDPMKAKQYVQNKSMPIVVK 143
GF GPS + +L K A + K G+P D + + + P+++K
Sbjct: 99 GFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIK 158
Query: 144 ADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALCDG 196
A G+G+ V DE +I + N V IE+Y+E V L D
Sbjct: 159 ATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADK 217
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis.
Length = 1143
Score = 38.3 bits (89), Expect = 0.004
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 8/139 (5%)
Query: 54 IIHFCQEKHIDLVVVGPELPLVNG-ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTK 112
II + +D + G N +DA N AG GP K A+ K
Sbjct: 66 IIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIK 125
Query: 113 YGIPT--ATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCF 170
G+P T + + P+++KA G+G+ V + + A R
Sbjct: 126 AGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAK 185
Query: 171 QQI-----NSTVIIEEYLE 184
+ N V +E+ +E
Sbjct: 186 SEAKAAFGNDEVYVEKLIE 204
>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. In several thermophilic species
(Methanobacterium thermoautotrophicum, Methanococcus
jannaschii, Aquifex aeolicus), the large subunit appears
split, at different points, into two separate genes.
Length = 1050
Score = 37.7 bits (88), Expect = 0.006
Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 31/220 (14%)
Query: 74 LVNGISDALNAAGFKVFGPSQRAA-KLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQY 132
++ AL AG + G S + + E + F++ + GIP ++ + +A ++
Sbjct: 641 TPLNLAKALEEAGVPILGTSPESIDRAEDREKFSE-LLDELGIPQPKWKTATSVEEAVEF 699
Query: 133 VQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQ-QINSTVIIEEYLE-GFEVSF 190
P++V+ + G+ + + +E ++ + V+I++YLE EV
Sbjct: 700 ASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDV 759
Query: 191 FALCDGKTAIPFTTARDHKR--IHDGDIGPNTGGMGACS-PALGMSQELYSTVIQKIILP 247
A+ DG+ + + +H GD C P Q L + ++ +I
Sbjct: 760 DAVSDGEEVLIPGIMEHIEEAGVHSGD--------STCVLPP----QTLSAEIVDRIKDI 807
Query: 248 TIEGMQKEQNPFQGVLFAGLM-----ITEQGPYLIEYNVR 282
+ + KE N GLM + + Y+IE N R
Sbjct: 808 VRK-IAKELN------VKGLMNIQFAVKDGEVYVIEVNPR 840
>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase
A/UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Length = 809
Score = 36.7 bits (85), Expect = 0.010
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 91 GPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFS------DPMKA-KQYVQNKSMPIVVK 143
GPS + + K K+F + G+P YQ + +P V+ S P+ VK
Sbjct: 557 GPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVK 616
Query: 144 ADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEG---FEVSFFALCDGKTAI 200
L + GV V+E I F ++ V +EE G EVS L DG +A
Sbjct: 617 TAHLGSSIGVFEVHNVEELRDKISEAFLY-DTDVFVEESRLGSREIEVSC--LGDGSSA- 672
Query: 201 PFTTARDHKR 210
+ A H+R
Sbjct: 673 -YVIAGPHER 681
>gnl|CDD|162159 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This
family contains a split seen both in a maximum parsimony
tree (which ignores gaps) and in the gap pattern near
position 85 of the seed alignment. Eukaryotic and most
bacterial sequences are longer and contain a region
similar to TXQTXXXG. Sequences from Deinococcus
radiodurans, Mycobacterium tuberculosis, Streptomyces
coelicolor, and the Archaea are 6 amino acids shorter in
that region and contain a motif resembling [KR]G.
Length = 386
Score = 36.2 bits (84), Expect = 0.015
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 106 AKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM-PIVVKADGLCAGK----GVVVAATVD 160
AK+ KYGIP + +A++ P+VVKA G+ GV VA + +
Sbjct: 8 AKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKE 67
Query: 161 EATSAIDRCF 170
EA +A ++
Sbjct: 68 EARAAAEKLL 77
>gnl|CDD|180352 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase
subunit; Reviewed.
Length = 372
Score = 35.9 bits (84), Expect = 0.018
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 21/93 (22%)
Query: 107 KKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKA-----DGLCAGKGVVVAATVDE 161
K+F K GIP A + + + + +P V+K DG KG V + ++
Sbjct: 105 KQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPAVLKTRRGGYDG----KGQWVIRSAED 160
Query: 162 ATSAIDRCFQQINSTVIIEEYLEGF-----EVS 189
+A + + S I LE F EVS
Sbjct: 161 LEAA----WALLGSVPCI---LEEFVPFEREVS 186
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
Length = 478
Score = 35.2 bits (81), Expect = 0.035
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 85 AGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKA-KQYVQNKSMPIV 141
AG GP + +K+ A+ K GIP T + S+ M+ K + + P++
Sbjct: 97 AGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVI 156
Query: 142 VKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLE 184
+KA G G+G+ V ++ +A + C ++ N V +E+Y+
Sbjct: 157 LKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV 204
>gnl|CDD|162031 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This
family, related to bacterial glutathione synthetases,
contains at least two different alpha-L-glutamate
ligases. One is RimK, as in E. coli, which adds
additional Glu residues to the native Glu-Glu C-terminus
of ribosomal protein S6, but not to Lys-Glu mutants.
Most species with a member of this subfamily lack an S6
homolog ending in Glu-Glu, however. Members in
Methanococcus jannaschii act instead as a
tetrahydromethanopterin:alpha-l-glutamate ligase
(MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
(MJ1001).
Length = 277
Score = 34.2 bits (79), Expect = 0.057
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 81 ALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPI 140
L + G V S A K + K G+P P +A + ++ P+
Sbjct: 68 YLESLGVPVINSSD-AILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGFPV 126
Query: 141 VVKADGLCAGKGVVVAATVDEATSAID--RCFQQINSTVIIEEYLE 184
V+K G+ V +A A + ++ + ++EY++
Sbjct: 127 VLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIK 172
>gnl|CDD|182468 PRK10446, PRK10446, ribosomal protein S6 modification protein;
Provisional.
Length = 300
Score = 34.1 bits (78), Expect = 0.078
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 139 PIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE 184
P+VVK G GVV+A T A S ID F+ +N+ ++++EY++
Sbjct: 137 PLVVKLVEGTQGIGVVLAETRQAAESVID-AFRGLNAHILVQEYIK 181
>gnl|CDD|179356 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed.
Length = 333
Score = 33.6 bits (78), Expect = 0.10
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 103 KSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNK----SMPIVVKADGLCAGK--GVVVA 156
K K+ GIP A Y + + + +P+ VK G G+
Sbjct: 124 KILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKLGLPVFVKP--ANLGSSVGISKV 181
Query: 157 ATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALC--DGKTAIP 201
+E +A+D F + + V++E+ ++G E+ A+ D K ++P
Sbjct: 182 KNEEELAAALDLAF-EYDRKVLVEQGIKGREIE-CAVLGNDPKASVP 226
>gnl|CDD|179288 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.
Length = 304
Score = 32.4 bits (75), Expect = 0.20
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 103 KSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGK--GVVVAATVD 160
K K G+PT + + + +P+VVK G GV D
Sbjct: 99 KLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLVVKP--AREGSSVGVSKVKEED 156
Query: 161 EATSAIDRCFQQINSTVIIEEYLEGFEVS 189
E +A++ F+ + V++E+Y++G E++
Sbjct: 157 ELQAALELAFK-YDDEVLVEKYIKGRELT 184
>gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1068
Score = 32.2 bits (74), Expect = 0.25
Identities = 26/147 (17%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Query: 54 IIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKY 113
+++ + ++I V+V ++ L AG + G S + + +
Sbjct: 622 VLNVAEAENIKGVIVQFGGQTAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDEL 681
Query: 114 GIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI 173
G+P +D +A + + P++++ + G+G+ V DE A++ +
Sbjct: 682 GLPHVPGLTATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVY--DEP--ALEAYLAEN 737
Query: 174 NST---VIIEEYLEGFEVSFFALCDGK 197
S ++I+++++G E A+ DG+
Sbjct: 738 ASQLYPILIDQFIDGKEYEVDAISDGE 764
>gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional.
Length = 299
Score = 31.7 bits (72), Expect = 0.40
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 102 SKSFAKKFC-TKYGIPTATYQHFSDPMKAKQYVQNK--------SMPIVVKADGLCAGKG 152
S +F+ C K TY+ ++ +V+ K P VVK + G
Sbjct: 85 SDAFSSMICFDKL----LTYRFLKGTVEIPDFVEIKEFMKTSPLGYPCVVKPRREGSSIG 140
Query: 153 VVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFE--VSFFALCDGKTAIPFTTARDHKR 210
V + + +E A+ + S VI++EY+ G E VS G +P R +R
Sbjct: 141 VFICESDEEFQHALKEDLPRYGS-VIVQEYIPGREMTVSILETEKGFEVLPILELRPKRR 199
Query: 211 IHD 213
+D
Sbjct: 200 FYD 202
>gnl|CDD|149489 pfam08442, ATP-grasp_2, ATP-grasp domain.
Length = 202
Score = 31.1 bits (71), Expect = 0.57
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 106 AKKFCTKYGIPTATYQHFSDPMKAKQ-YVQNKSMPIVVKADGLCAGK----GVVVAATVD 160
AK+ KYG+P + P +A++ + VVKA L G+ GV +A + +
Sbjct: 7 AKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPE 66
Query: 161 EA 162
EA
Sbjct: 67 EA 68
>gnl|CDD|181436 PRK08462, PRK08462, biotin carboxylase; Validated.
Length = 445
Score = 30.5 bits (69), Expect = 0.80
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 86 GFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNKSMPIVVK 143
K GPS L S KS AK+ + G+P + +AK+ + P+++K
Sbjct: 101 NIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILK 160
Query: 144 ADGLCAGKGVVV 155
A G+G+ V
Sbjct: 161 AAAGGGGRGMRV 172
>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase
subunit; Provisional.
Length = 467
Score = 30.5 bits (69), Expect = 0.94
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNK 136
++A+ AAG GP + + K+ A++ + G+PT + + A +
Sbjct: 95 AEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARI 154
Query: 137 SMPIVVKADGLCAGKGVVVAATVDE 161
P+++KA G+G+ VA +
Sbjct: 155 GYPLMIKAAAGGGGRGIRVAHDAAQ 179
>gnl|CDD|181492 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 451
Score = 30.2 bits (69), Expect = 1.1
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Query: 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNKS 137
+ +GF GPS +L K AK K G+P + D +A +
Sbjct: 93 EICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIG 152
Query: 138 MPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLE 184
P+++KA G+G+ V T E A + N V +E+YLE
Sbjct: 153 YPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE 204
>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 30.1 bits (69), Expect = 1.2
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 139 PIVVKA-DGLCAGKGVVV-AATVDEATSAIDRCFQQINSTVIIEEYLEGFE 187
P+VVK DG G+GV V T +E +A + +S VI+E Y+ G +
Sbjct: 251 PVVVKPLDG-NHGRGVTVNITTREEIEAAYAVA-SKESSDVIVERYIPGKD 299
>gnl|CDD|132147 TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103.
Members of this protein family belong to the GNAT
family of acetyltransferases. Each is part of a
conserved three-gene cassette sparsely distributed
across at least twenty different species known so far,
including alpha, beta, and gamma Proteobacteria,
Mycobacterium, and Prosthecochloris, which is a member
of the Chlorobi. The other two members of the cassette
are a probable protease and an asparagine synthetase
family protein.
Length = 547
Score = 29.3 bits (66), Expect = 2.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 140 IVVK-ADGLCAGKGVVVAAT-VDEATSAIDRCFQQINSTVIIEEYLEGFE 187
+VVK G GKG+ V D+ +AI + +Q V++E Y+ G +
Sbjct: 334 VVVKPVRGE-QGKGISVDVRTPDDLEAAIAKA-RQFCDRVLLERYVPGED 381
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 29.2 bits (66), Expect = 2.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 139 PIVVKADGLCAGKGVVVAATVD 160
PI+ DG+CAG G ++A D
Sbjct: 115 PIIAAVDGVCAGAGAILAMASD 136
>gnl|CDD|148597 pfam07083, DUF1351, Protein of unknown function (DUF1351). This
family consists of several bacterial and phage proteins
of around 230 residues in length. The function of this
family is unknown.
Length = 220
Score = 28.9 bits (65), Expect = 2.5
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 16/99 (16%)
Query: 75 VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQ 134
+ + D + +G K F Q+ + ++ K + + +YG+ ++ D K
Sbjct: 87 IKAVIDLI-DSGIKEFEEKQKELRRDTVKEYLSEKAEEYGLDKRDFEEKYDDYVKKSKWL 145
Query: 135 NKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI 173
NKS+ + + + I Q++
Sbjct: 146 NKSVSL---------------KKIEESIDTLILSEAQKL 169
>gnl|CDD|184149 PRK13568, hofQ, putative outer membrane porin HofQ; Provisional.
Length = 381
Score = 28.5 bits (64), Expect = 3.4
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 345 KIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESR 388
+P T L +A V ++L + G +LS G + R
Sbjct: 79 MLPLANLTLTLQYADAEEVADSLQSQRGGLLS--PRGSVTADKR 120
>gnl|CDD|180445 PRK06179, PRK06179, short chain dehydrogenase; Provisional.
Length = 270
Score = 28.3 bits (64), Expect = 3.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 74 LVNGIS--------DALNAAGFKVFGPSQRAAKLESSKSF 105
LV G S + L AG++VFG S+ A+
Sbjct: 8 LVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGV 47
>gnl|CDD|178653 PLN03106, TCP2, Protein TCP2; Provisional.
Length = 447
Score = 28.1 bits (62), Expect = 4.0
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 336 EYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTA 369
H + I QN+ T+L G VNNN
Sbjct: 229 HAAHHNNNNPISQNSSFTELLTGGIDPVNNNRQW 262
>gnl|CDD|182099 PRK09831, PRK09831, putative acyltransferase; Provisional.
Length = 147
Score = 28.0 bits (62), Expect = 5.4
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 58 CQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT 117
C E +ID++ V PE G++ AL K S+ +++S + AK F +YG T
Sbjct: 70 CIEHYIDMLFVDPEYTR-RGVASAL----LKPLIKSESELTVDASIT-AKPFFERYGFQT 123
Query: 118 ATYQ 121
Q
Sbjct: 124 VKQQ 127
>gnl|CDD|183942 PRK13278, purP,
5-formaminoimidazole-4-carboxamide-1-(beta)-D-
ribofuranosyl 5'-monophosphate synthetase; Provisional.
Length = 358
Score = 27.9 bits (63), Expect = 5.4
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 139 PIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ--INST--VIIEEYLEG--FEVSFF 191
P++VK G G+G +A + +E ID+ ++ I II+EY+ G + +F
Sbjct: 151 PVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGVPYYFHYF 209
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 450
Score = 27.7 bits (62), Expect = 5.6
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 85 AGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNKSMPIVV 142
G GPS SK A++ G+P + D +A + P+++
Sbjct: 98 EGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVML 157
Query: 143 KADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLE 184
KA G G+ + T E T A + ++ N + IE+Y+E
Sbjct: 158 KASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE 204
>gnl|CDD|184902 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisional.
Length = 387
Score = 27.5 bits (61), Expect = 6.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 93 SQRAAK-LESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPI 140
S+R K E KS K+C K+G PT+ F +Y++N PI
Sbjct: 130 SRRIRKGEEYEKSEELKYCEKFGFPTSPESAFMR-RAVIEYLKNILQPI 177
>gnl|CDD|181582 PRK08916, PRK08916, flagellar motor switch protein; Reviewed.
Length = 116
Score = 27.4 bits (61), Expect = 6.8
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 359 GTAI---VNNNLTANGGRVLSATALGKTITE 386
G AI VNN L A G VL LG T+TE
Sbjct: 79 GEAIDIYVNNRLVARGEVVLVEDRLGVTMTE 109
>gnl|CDD|180883 PRK07206, PRK07206, hypothetical protein; Provisional.
Length = 416
Score = 26.9 bits (60), Expect = 9.1
Identities = 31/116 (26%), Positives = 43/116 (37%), Gaps = 22/116 (18%)
Query: 173 INSTVIIEEYLEGFE--VSFFALCDGKTAIPFTT--ARDHKRIHDGDIGPNTGGMGACSP 228
+N TV+++EYL G E V+F +L DG T R HK G
Sbjct: 188 VNETVLVQEYLIGTEYVVNFVSL-DGN---HLVTEIVRYHKT-------SLNSGSTVYD- 235
Query: 229 ALGMSQEL--YSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVR 282
E YS + ++ + G A +M+T GP LIE R
Sbjct: 236 ----YDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIGAR 287
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
Length = 447
Score = 27.0 bits (60), Expect = 9.9
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 88 KVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNKSMPIVVKAD 145
GP +L +KS A++ K G+P + + +A + + P++VKA
Sbjct: 101 VFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160
Query: 146 GLCAGKGVVVAATVDEATSAIDRCFQQINS-----TVIIEEYLE 184
G+G+ + + +E A + + + ++ IE+++E
Sbjct: 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE 204
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,952,010
Number of extensions: 442938
Number of successful extensions: 888
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 55
Length of query: 424
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 328
Effective length of database: 3,920,105
Effective search space: 1285794440
Effective search space used: 1285794440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)