Query gi|254780207|ref|YP_003064620.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon May 23 14:00:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780207.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k8ba_ d.241.1.1 (A:) Transla 9.7 56 0.0041 12.8 1.4 29 67-95 3-35 (52)
2 d2gycn1 b.34.5.6 (N:1-114) Rib 4.4 87 0.0064 11.7 0.1 17 16-32 66-82 (114)
3 d2zjrm1 b.34.5.6 (M:2-109) Rib 3.9 1.2E+02 0.0086 11.0 1.2 14 18-31 75-88 (108)
4 d2j01t1 b.34.5.6 (T:1-138) Rib 3.2 1.4E+02 0.01 10.6 0.8 16 17-32 70-85 (138)
5 d2q07a3 d.17.6.5 (A:394-459) U 3.1 1.4E+02 0.011 10.5 1.0 33 63-95 30-64 (66)
6 d1gdta1 a.4.1.2 (A:141-183) ga 3.0 67 0.0049 12.3 -1.5 10 16-25 29-38 (43)
7 d1zsoa1 b.166.1.1 (A:1-156) Hy 2.7 1.1E+02 0.0081 11.2 -0.6 50 35-88 60-109 (156)
8 d2dlqa1 g.37.1.1 (A:93-118) GL 2.6 1.4E+02 0.011 10.5 -0.2 5 39-43 4-8 (26)
9 d1tvfa1 b.105.1.2 (A:316-383) 2.5 1.7E+02 0.012 10.2 0.2 19 60-78 5-23 (68)
10 d1f0la1 b.2.1.1 (A:381-535) Di 2.3 1.8E+02 0.013 10.0 2.0 26 36-61 107-132 (155)
No 1
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.67 E-value=56 Score=12.77 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=19.8
Q ss_pred HHCCCEEEEEE----CCCCCCCHHHHHHHHHHH
Q ss_conf 30242024621----233588616899998653
Q gi|254780207|r 67 LIDGKKAMITT----DNFMGGEPITFIKYLFEE 95 (98)
Q Consensus 67 lidgkkamitt----dnfmggepitfikylfee 95 (98)
+++|||..|.- -.-|.-+|--+.||+..|
T Consensus 3 ~~EGkkTvi~Nf~eI~~~L~R~p~hv~kfl~~E 35 (52)
T d1k8ba_ 3 LIEGNRTIIRNFRELAKAVNRDEEFFAKYLLKE 35 (52)
T ss_dssp EEETTEEEECCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEECCEEEEECHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 673464766369999988697989999999998
No 2
>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}
Probab=4.43 E-value=87 Score=11.72 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=10.5
Q ss_pred CCCCEEEEEECCCCCCC
Q ss_conf 32011577740874002
Q gi|254780207|r 16 NIARAQVYHIHSPRIAT 32 (98)
Q Consensus 16 niaraqvyhihspriat 32 (98)
++.-.+++.+|||.|..
T Consensus 66 GvGVEr~fpl~SP~I~~ 82 (114)
T d2gycn1 66 GEGVERVFQTHSPVVDS 82 (114)
T ss_dssp CSSSCCCCCCCSSCTTC
T ss_pred CCCEEEEEEECCCCCCE
T ss_conf 86489999907998242
No 3
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.94 E-value=1.2e+02 Score=11.01 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=7.8
Q ss_pred CCEEEEEECCCCCC
Q ss_conf 01157774087400
Q gi|254780207|r 18 ARAQVYHIHSPRIA 31 (98)
Q Consensus 18 araqvyhihspria 31 (98)
.-..++.+|||.|.
T Consensus 75 GVEr~fpl~SP~i~ 88 (108)
T d2zjrm1 75 GVERVFPFASPLVN 88 (108)
T ss_dssp EEEEEEETTCTTEE
T ss_pred CEEEEEECCCCCCC
T ss_conf 28999975899756
No 4
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}
Probab=3.18 E-value=1.4e+02 Score=10.61 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=10.0
Q ss_pred CCCEEEEEECCCCCCC
Q ss_conf 2011577740874002
Q gi|254780207|r 17 IARAQVYHIHSPRIAT 32 (98)
Q Consensus 17 iaraqvyhihspriat 32 (98)
+.-..++.+|||.|..
T Consensus 70 vGVEr~fpl~SP~I~~ 85 (138)
T d2j01t1 70 VGVERIFPLHSPLIQK 85 (138)
T ss_dssp EEEEEEECSSSSCSCC
T ss_pred CCEEEEEECCCCCCCC
T ss_conf 4489998635998664
No 5
>d2q07a3 d.17.6.5 (A:394-459) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.07 E-value=1.4e+02 Score=10.54 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=23.1
Q ss_pred CHHHHHCCCEEEEEECCCCCCCHH--HHHHHHHHH
Q ss_conf 146430242024621233588616--899998653
Q gi|254780207|r 63 KKEELIDGKKAMITTDNFMGGEPI--TFIKYLFEE 95 (98)
Q Consensus 63 kkeelidgkkamittdnfmggepi--tfikylfee 95 (98)
..-||..|||.....|...|--.| ....||.|.
T Consensus 30 pelellegkkrlarvdriygmldiyekiaayllek 64 (66)
T d2q07a3 30 PELELLEGKKRLARVDRIYGMLDIYEKIAAYLLEK 64 (66)
T ss_dssp TSCEEEETTEEEEEEETTTTEEEECHHHHHHHHHT
T ss_pred CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 51588614178998999998899999999999870
No 6
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=2.99 E-value=67 Score=12.34 Aligned_cols=10 Identities=60% Similarity=1.029 Sum_probs=5.6
Q ss_pred CCCCEEEEEE
Q ss_conf 3201157774
Q gi|254780207|r 16 NIARAQVYHI 25 (98)
Q Consensus 16 niaraqvyhi 25 (98)
||.|+.||.+
T Consensus 29 gI~R~SVYR~ 38 (43)
T d1gdta1 29 NIARSTVYKV 38 (43)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
T ss_conf 9879999999
No 7
>d1zsoa1 b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.257 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=2.74 E-value=1.1e+02 Score=11.15 Aligned_cols=50 Identities=20% Similarity=0.148 Sum_probs=22.4
Q ss_pred EEEEEEEEEEECHHHCCCCCCCCCCEEECHHHHHCCCEEEEEECCCCCCCHHHH
Q ss_conf 058897334513444255877543011114643024202462123358861689
Q gi|254780207|r 35 SIHIKCHSCTLNKHHINKTPSSSSAVYTKKEELIDGKKAMITTDNFMGGEPITF 88 (98)
Q Consensus 35 sihikchsctlnkhhinktpssssavytkkeelidgkkamittdnfmggepitf 88 (98)
+...||..|.- .+.|+-.|.+....|+-- -+|+...|-.=..-|-||+-|
T Consensus 60 nfv~KCk~C~r-e~si~i~~~~~~~~y~~~---~~~~~~~i~~fdCRGlEp~eF 109 (156)
T d1zsoa1 60 NFMIKWTEYPK-YSTINFVNTKNSCSYEEV---NNNEWRDFASFECRGIELIDF 109 (156)
T ss_dssp SEEECCSSSSC-CEEEEEECCTTTTEEEGG---GTTSCEEEEEEEEESEEEEEE
T ss_pred EEEEECCCCCC-EEEEEEEECCCCCCCCCC---CCCCCCEEEEEECCCCEEEEE
T ss_conf 89997888898-436999808998431002---488834899998888576888
No 8
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.60 E-value=1.4e+02 Score=10.54 Aligned_cols=5 Identities=80% Similarity=1.876 Sum_probs=0.0
Q ss_pred EEEEE
Q ss_conf 97334
Q gi|254780207|r 39 KCHSC 43 (98)
Q Consensus 39 kchsc 43 (98)
||.||
T Consensus 4 kcssc 8 (26)
T d2dlqa1 4 KCSSC 8 (26)
T ss_dssp ECSSS
T ss_pred CCCHH
T ss_conf 50178
No 9
>d1tvfa1 b.105.1.2 (A:316-383) Pencillin binding protein 4 (PbpD), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=2.51 E-value=1.7e+02 Score=10.17 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=0.0
Q ss_pred EEECHHHHHCCCEEEEEEC
Q ss_conf 1111464302420246212
Q gi|254780207|r 60 VYTKKEELIDGKKAMITTD 78 (98)
Q Consensus 60 vytkkeelidgkkamittd 78 (98)
|.+|-|.-||||+--+..|
T Consensus 5 vLsKG~h~IdGkky~v~kD 23 (68)
T d1tvfa1 5 ILSKGEQRINGKKYYVEND 23 (68)
T ss_dssp EECSEEEEETTEEEEECSC
T ss_pred ECCCCCEECCCEEEEECCC
T ss_conf 1136856717868885120
No 10
>d1f0la1 b.2.1.1 (A:381-535) Diphtheria toxin, C-terminal domain {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=2.28 E-value=1.8e+02 Score=9.99 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=0.0
Q ss_pred EEEEEEEEEECHHHCCCCCCCCCCEE
Q ss_conf 58897334513444255877543011
Q gi|254780207|r 36 IHIKCHSCTLNKHHINKTPSSSSAVY 61 (98)
Q Consensus 36 ihikchsctlnkhhinktpssssavy 61 (98)
.|...|...-.|-|-|.+|++|-.|.
T Consensus 107 lhvafhrsssekihs~e~~~~si~vl 132 (155)
T d1f0la1 107 LHVAFHRSSSEKIHSNEISSDSIGVL 132 (155)
T ss_dssp EEEEEEECCCSCCCTTTCSCCEEEEE
T ss_pred EEEEEEECCHHCCCCCCCCCCCCCEE
T ss_conf 78988605400023577775410021
Done!