BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780207|ref|YP_003064620.1| hypothetical protein
CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62]
(98 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
Results from round 1
>gi|254780207|ref|YP_003064620.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039884|gb|ACT56680.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 98
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV
Sbjct: 1 MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
Query: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK
Sbjct: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
>gi|315122632|ref|YP_004063121.1| hypothetical protein CKC_04420 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496034|gb|ADR52633.1| hypothetical protein CKC_04420 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 119
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 1 MRHLILIMLLSILTTNIARAQ-VYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSS-SS 58
M L+L ++L + + +AQ VY IH P SI++KC SC L K + + +
Sbjct: 1 MNFLMLAVILFAFSAQVGKAQSVYEIHHPIRTQDFSIYVKCLSCELPKQSKSNIQNQLND 60
Query: 59 AVYTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
+ T+KEE+IDGK A++ TDN MG EP TFIK+ E++K
Sbjct: 61 VISTQKEEIIDGKNAIVMTDNLMGDEPETFIKHFKHEEQK 100
>gi|159185417|ref|NP_353669.2| hypothetical protein Atu8084 [Agrobacterium tumefaciens str. C58]
gi|159140665|gb|AAK86454.2| conserved hypothetical protein [Agrobacterium tumefaciens str.
C58]
Length = 169
Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 1 MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
M+ L L ++ + + + + + +I+ ++ S + + C C K NK + AV
Sbjct: 1 MQRLFLTAIVVLTSGSAMASSIEYINDVQVTNGSFVRLNCAGCQPLK---NKPAAQGYAV 57
Query: 61 -----YTKKEEL--IDGKKAMITTDNFMGGEPITFIK 90
T+ E+ +DGK+ ++ T+ ++GG P+TF+
Sbjct: 58 PSIEPGTQHTEMHEVDGKRTLVRTEAWLGGAPVTFVS 94
>gi|325292028|ref|YP_004277892.1| hypothetical protein AGROH133_04143 [Agrobacterium sp. H13-3]
gi|325059881|gb|ADY63572.1| hypothetical protein AGROH133_04143 [Agrobacterium sp. H13-3]
Length = 170
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 1 MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKT----PSS 56
MR L+L ++++ + + + +++ + S + + C C K + PS
Sbjct: 1 MRRLLLTAVVALTGGSAMASSIEYVNGTHTSNGSFVRLDCARCQPVKDNPAPEGFAIPSI 60
Query: 57 SSAVYTKKEELIDGKKAMITTDNFMGGEPITFI 89
+ I+GK+ ++ T+ ++GG P+TF+
Sbjct: 61 EPGTQHTEMREIEGKRTLVRTEAWLGGAPVTFV 93
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780207|ref|YP_003064620.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039884|gb|ACT56680.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 98
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV
Sbjct: 1 MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
Query: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK
Sbjct: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
>gi|315122632|ref|YP_004063121.1| hypothetical protein CKC_04420 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496034|gb|ADR52633.1| hypothetical protein CKC_04420 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 119
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 1 MRHLILIMLLSILTTNIARAQ-VYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSS-SS 58
M L+L ++L + + +AQ VY IH P SI++KC SC L K + + +
Sbjct: 1 MNFLMLAVILFAFSAQVGKAQSVYEIHHPIRTQDFSIYVKCLSCELPKQSKSNIQNQLND 60
Query: 59 AVYTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
+ T+KEE+IDGK A++ TDN MG EP TFIK+ E++K
Sbjct: 61 VISTQKEEIIDGKNAIVMTDNLMGDEPETFIKHFKHEEQK 100
>gi|159185417|ref|NP_353669.2| hypothetical protein Atu8084 [Agrobacterium tumefaciens str. C58]
gi|159140665|gb|AAK86454.2| conserved hypothetical protein [Agrobacterium tumefaciens str.
C58]
Length = 169
Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 1 MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
M+ L L ++ + + + + + +I+ ++ S + + C C + NK + AV
Sbjct: 1 MQRLFLTAIVVLTSGSAMASSIEYINDVQVTNGSFVRLNCAGC---QPLKNKPAAQGYAV 57
Query: 61 -----YTKKEEL--IDGKKAMITTDNFMGGEPITFI 89
T+ E+ +DGK+ ++ T+ ++GG P+TF+
Sbjct: 58 PSIEPGTQHTEMHEVDGKRTLVRTEAWLGGAPVTFV 93
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.319 0.137 0.365
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,642,646,247
Number of Sequences: 13984884
Number of extensions: 53979623
Number of successful extensions: 144433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 144426
Number of HSP's gapped (non-prelim): 10
length of query: 98
length of database: 4,792,584,752
effective HSP length: 67
effective length of query: 31
effective length of database: 3,855,597,524
effective search space: 119523523244
effective search space used: 119523523244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)