RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780207|ref|YP_003064620.1| hypothetical protein
CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.0 bits (53), Expect = 4.3
 Identities = 6/20 (30%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 18 ARAQVYHIHS-PRIATKSSI 36
          A  ++Y   S P +A K+++
Sbjct: 27 ASLKLYADDSAPALAIKATM 46


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 24.9 bits (54), Expect = 5.0
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 5/40 (12%)

Query: 35 SIHIKCHSCTLNKHHINKTPSSSSAVYTK-----KEELID 69
          +I + C  C +    I +  S    V         ++L+D
Sbjct: 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58


>1s1i_Y L35, YP55, 60S ribosomal protein L37-A; 80S ribosome, 60S
          ribosomal subunit, EEF2, tRNA translocation, sordarin,
          cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP:
          i.1.1.1
          Length = 87

 Score = 23.9 bits (52), Expect = 9.8
 Identities = 8/28 (28%), Positives = 10/28 (35%)

Query: 37 HIKCHSCTLNKHHINKTPSSSSAVYTKK 64
          H  C+ C     H+ K   SS      K
Sbjct: 15 HTLCNRCGRRSFHVQKKTCSSCGYPAAK 42


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 809,803
Number of extensions: 29658
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 6
Length of query: 98
Length of database: 5,693,230
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,141,614
Effective search space: 140814876
Effective search space used: 140814876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)