BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780208|ref|YP_003064621.1| hypothetical protein
CLIBASIA_00465 [Candidatus Liberibacter asiaticus str. psy62]
(66 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780208|ref|YP_003064621.1| hypothetical protein CLIBASIA_00465 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 66
Score = 133 bits (334), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MCIWGMMIRIMHLFLDQIGNFLMFFPMLRNRHMSIKILKNTLTTAFISSFKSFISRFLHM 60
MCIWGMMIRIMHLFLDQIGNFLMFFPMLRNRHMSIKILKNTLTTAFISSFKSFISRFLHM
Sbjct: 1 MCIWGMMIRIMHLFLDQIGNFLMFFPMLRNRHMSIKILKNTLTTAFISSFKSFISRFLHM 60
Query: 61 IANKDR 66
IANKDR
Sbjct: 61 IANKDR 66
>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
[Candidatus Liberibacter asiaticus str. psy62]
Length = 581
Score = 23.9 bits (50), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 12/46 (26%)
Query: 7 MIRIMHLFLDQIGNF------------LMFFPMLRNRHMSIKILKN 40
M +M F + +GNF L+FFP+ + +++S +KN
Sbjct: 346 MFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKN 391
>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 762
Score = 21.6 bits (44), Expect = 2.5, Method: Composition-based stats.
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 8 IRIMHLFLDQIGNFLMFFPML 28
IR+ +L+ GN + +FP++
Sbjct: 194 IRLEKPYLEIFGNSIFYFPLI 214
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 21.2 bits (43), Expect = 3.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 25 FPMLRNRHMSIKILKNTLTTAFISSFKSFISRFLHM 60
FP+L N H+S LK A +S + S LH+
Sbjct: 23 FPVLENVHLS---LKKGEIVALVSPSGTGKSTILHI 55
>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 443
Score = 21.2 bits (43), Expect = 3.1, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 29 RNRHMSIKILKNTLTTAFISSFKSFISRFLHMIANKD 65
+NR + L L I K+ I F +I N+D
Sbjct: 390 KNRKECMMRLNRALNEIIIDGIKTTIPLFQKLIKNED 426
>gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 220
Score = 20.8 bits (42), Expect = 4.1, Method: Composition-based stats.
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 49 SFKSFISRFLH 59
SFKSF+ R+ H
Sbjct: 188 SFKSFVERWFH 198
>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 674
Score = 20.4 bits (41), Expect = 5.9, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 37 ILKNTLTTAFISSFKSFISRFLHMIANKD 65
I N T + + KSFI F++ KD
Sbjct: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKD 568
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.342 0.145 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,378
Number of Sequences: 1233
Number of extensions: 1170
Number of successful extensions: 12
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 9
length of query: 66
length of database: 328,796
effective HSP length: 37
effective length of query: 29
effective length of database: 283,175
effective search space: 8212075
effective search space used: 8212075
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 31 (16.5 bits)