Query gi|254780209|ref|YP_003064622.1| hypothetical protein CLIBASIA_00470 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 51
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 17:13:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780209.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jo1_A Phospholemman; FXYD1, N 46.4 7.8 0.00033 19.7 1.8 43 7-49 24-72 (72)
2 2do5_A Splicing factor 3B subu 39.9 9.2 0.00039 19.3 1.4 20 13-32 38-57 (58)
3 2k6i_A Uncharacterized protein 27.6 34 0.0014 16.4 2.6 14 35-48 36-49 (56)
4 2bma_A Glutamate dehydrogenase 13.7 84 0.0035 14.3 2.3 24 19-43 148-171 (470)
5 1wj7_A Hypothetical protein (R 12.2 87 0.0037 14.3 1.9 22 21-42 4-31 (104)
6 1skh_A Major prion protein 2; 11.9 47 0.002 15.6 0.4 11 19-29 20-30 (30)
7 2w0c_P Protein P3, protein III 11.5 75 0.0032 14.6 1.4 13 33-45 28-40 (104)
8 1bb1_B Designed, thermostable 10.8 86 0.0036 14.3 1.5 10 31-40 7-16 (36)
9 1rr7_A Middle operon regulator 10.7 1.1E+02 0.0045 13.8 1.9 28 18-45 63-90 (129)
10 2ezw_A CAMP-dependent protein 7.4 64 0.0027 15.0 -0.3 15 21-35 24-38 (50)
No 1
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=46.42 E-value=7.8 Score=19.65 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCCCEE---CCC---CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986655304201---258---89998789989999999998630
Q gi|254780209|r 7 LMVAYLLSSVAISGGLC---FNR---PKGPSKEEQARIEQIRAEARERR 49 (51)
Q Consensus 7 lmvayllssvaisgglc---fnr---pkgpskeeqarieqiraearerr 49 (51)
.+|.+++....|-++-| ||. +..|.+||-.--..|++.|.+||
T Consensus 24 a~vlf~~GiliilS~kckC~~nqk~r~~~p~~ee~~~~~~i~~~~~~~~ 72 (72)
T 2jo1_A 24 AGILFILGILIVLSRRCRCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTTSTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 8999999999998586535788878899960456679999986312679
No 2
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.86 E-value=9.2 Score=19.27 Aligned_cols=20 Identities=45% Similarity=0.778 Sum_probs=16.0
Q ss_pred HHHHHHCCCEECCCCCCCCH
Q ss_conf 86655304201258899987
Q gi|254780209|r 13 LSSVAISGGLCFNRPKGPSK 32 (51)
Q Consensus 13 lssvaisgglcfnrpkgpsk 32 (51)
|.+....+|..||||++||.
T Consensus 38 Lk~Y~~Q~g~il~kp~~~s~ 57 (58)
T 2do5_A 38 LQSYTRQTGIVLNRPSGPSS 57 (58)
T ss_dssp HHHHHHHHCCCCCCTTCSCC
T ss_pred HHHHHHCCCEEECCCCCCCC
T ss_conf 99876445247538888889
No 3
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=27.62 E-value=34 Score=16.38 Aligned_cols=14 Identities=57% Similarity=0.669 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 98999999999863
Q gi|254780209|r 35 QARIEQIRAEARER 48 (51)
Q Consensus 35 qarieqiraearer 48 (51)
..|.|||.|||-|.
T Consensus 36 knraeqikaeaiee 49 (56)
T 2k6i_A 36 KNRAEQIKAEAIEE 49 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 81899988999999
No 4
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=13.72 E-value=84 Score=14.35 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=16.8
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 0420125889998789989999999
Q gi|254780209|r 19 SGGLCFNRPKGPSKEEQARIEQIRA 43 (51)
Q Consensus 19 sgglcfnrpkgpskeeqarieqira 43 (51)
.||..|| ||++|..|--|+-+--.
T Consensus 148 KGGi~~d-Pk~~s~~E~~r~~r~~~ 171 (470)
T 2bma_A 148 KGGSDFD-PKGKSDNEILKFCQAFM 171 (470)
T ss_dssp EEEESCC-CTTCCHHHHHHHHHHHH
T ss_pred CEEEECC-CCCCCHHHHHHHHHHHH
T ss_conf 3599528-99999899999999999
No 5
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=12.17 E-value=87 Score=14.28 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=14.9
Q ss_pred CEECCCCCCCCHH------HHHHHHHHH
Q ss_conf 2012588999878------998999999
Q gi|254780209|r 21 GLCFNRPKGPSKE------EQARIEQIR 42 (51)
Q Consensus 21 glcfnrpkgpske------eqarieqir 42 (51)
|---|+++.|.|. ||.||-||-
T Consensus 4 g~~~~~~~~~~k~~~qATaEQlRlAqii 31 (104)
T 1wj7_A 4 GSSGNQNQTQHKQRPQATAEQIRLAQMI 31 (104)
T ss_dssp CCCCSCCCCTTCCSSSSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7678766566424676569999999882
No 6
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=11.92 E-value=47 Score=15.63 Aligned_cols=11 Identities=55% Similarity=0.930 Sum_probs=8.6
Q ss_pred CCCEECCCCCC
Q ss_conf 04201258899
Q gi|254780209|r 19 SGGLCFNRPKG 29 (51)
Q Consensus 19 sgglcfnrpkg 29 (51)
.-|||-.|||-
T Consensus 20 d~glckkrpkp 30 (30)
T 1skh_A 20 DVGLCKKRPKP 30 (30)
T ss_dssp HHTTSSSCCCC
T ss_pred HCCCCCCCCCC
T ss_conf 40200268998
No 7
>2w0c_P Protein P3, protein III; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=11.49 E-value=75 Score=14.60 Aligned_cols=13 Identities=46% Similarity=0.562 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8998999999999
Q gi|254780209|r 33 EEQARIEQIRAEA 45 (51)
Q Consensus 33 eeqarieqiraea 45 (51)
..-||||||.|-.
T Consensus 28 ~~WA~iEQv~A~K 40 (104)
T 2w0c_P 28 SGWARVEQIKAAK 40 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 7678899887765
No 8
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=10.85 E-value=86 Score=14.30 Aligned_cols=10 Identities=70% Similarity=0.747 Sum_probs=7.4
Q ss_pred CHHHHHHHHH
Q ss_conf 8789989999
Q gi|254780209|r 31 SKEEQARIEQ 40 (51)
Q Consensus 31 skeeqarieq 40 (51)
-|||||.||.
T Consensus 7 ikeeqaaiee 16 (36)
T 1bb1_B 7 IKEEQAAIEE 16 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9888888999
No 9
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=10.65 E-value=1.1e+02 Score=13.84 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.4
Q ss_pred HCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3042012588999878998999999999
Q gi|254780209|r 18 ISGGLCFNRPKGPSKEEQARIEQIRAEA 45 (51)
Q Consensus 18 isgglcfnrpkgpskeeqarieqiraea 45 (51)
--||..+.-|||-+-....|-.+|+.+-
T Consensus 63 ~~GG~~iYiPk~~~~~~~~Rn~~I~~ef 90 (129)
T 1rr7_A 63 HLGGGQVYIPRGQALDSLIRDLRIWNDF 90 (129)
T ss_dssp HHCSSCCCCCCSHHHHHHHHHHHHHHHC
T ss_pred HHCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 9699468855844889999999999990
No 10
>2ezw_A CAMP-dependent protein kinase type I-alpha regulatory subunit; anchoring, four-helix bundle, transferase; NMR {Bos taurus} SCOP: a.31.1.1 PDB: 3im3_A 3im4_A
Probab=7.42 E-value=64 Score=14.97 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=11.0
Q ss_pred CEECCCCCCCCHHHH
Q ss_conf 201258899987899
Q gi|254780209|r 21 GLCFNRPKGPSKEEQ 35 (51)
Q Consensus 21 glcfnrpkgpskeeq 35 (51)
-||.+||..|-.--.
T Consensus 24 qLCi~kPe~P~~FLr 38 (50)
T 2ezw_A 24 QLCTARPERPMAFLR 38 (50)
T ss_dssp HHTTCCCSCHHHHHH
T ss_pred HHHHCCCCCHHHHHH
T ss_conf 997539997789999
Done!