RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780209|ref|YP_003064622.1| hypothetical protein
CLIBASIA_00470 [Candidatus Liberibacter asiaticus str. psy62]
         (51 letters)



>gnl|CDD|181351 PRK08284, PRK08284, precorrin 6A synthase; Provisional.
          Length = 253

 Score = 29.0 bits (66), Expect = 0.30
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 28  KGPSKEEQARIEQIRAEARERR 49
            GP  E    I ++RAEAR R 
Sbjct: 218 AGPLAEVAEEILRVRAEARARH 239


>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
           transaminase; Provisional.
          Length = 466

 Score = 27.0 bits (60), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 10  AYLLSSVAISGGLCFNRPKGPSKEEQAR-----IEQIRAE 44
             LL ++ +    C+ RP+G S EE +R     +EQ  AE
Sbjct: 171 PLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE 210


>gnl|CDD|131487 TIGR02434, CobF, precorrin-6A synthase (deacetylating).  This model
           identifies CobF in High GC gram positive,
           alphaproteobacteria and pseudomonas-related species.
          Length = 249

 Score = 26.6 bits (59), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 28  KGPSKEEQARIEQIRAEARER 48
            GP  E   RI ++RA+AR R
Sbjct: 217 SGPLAEVGPRIAELRAQARAR 237


>gnl|CDD|152148 pfam11712, Vma12, Endoplasmic reticulum-based factor for assembly
          of V-ATPase.  The yeast vacuolar proton-translocating
          ATPase (V-ATPase) is the best characterized member of
          the V-ATPase family. A total of thirteen genes are
          required for encoding the subunits of the enzyme
          complex itself and an additional three for providing
          factors necessary for the assembly of the whole. Vma12
          is one of these latter, all three of which are
          localized to the endoplasmic reticulum.
          Length = 137

 Score = 26.6 bits (59), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 25 NRPKGPSKEEQARIEQIRAEARERRYQ 51
               PS E  AR+E++RA   ER YQ
Sbjct: 15 PPKPEPSPEFLARLERLRAAQEEREYQ 41


>gnl|CDD|185217 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
           Provisional.
          Length = 517

 Score = 26.3 bits (59), Expect = 2.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 30  PSKEEQARIEQIRA 43
           P K +Q  IEQI+A
Sbjct: 100 PPKLDQEVIEQIKA 113


>gnl|CDD|178794 PRK00013, groEL, chaperonin GroEL; Reviewed.
          Length = 542

 Score = 24.3 bits (54), Expect = 7.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 28  KGPSKEEQARIEQIRAE 44
            G  +  +AR+ QI+A+
Sbjct: 335 AGDKEAIKARVAQIKAQ 351


>gnl|CDD|162708 TIGR02109, PQQ_syn_pqqE, coenzyme PQQ biosynthesis protein E.  This
           model describes coenzyme PQQ biosynthesis protein E, a
           gene required for the biosynthesis of
           pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is
           required for some glucose dehydrogenases and alcohol
           dehydrogenases.
          Length = 358

 Score = 24.3 bits (53), Expect = 7.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 30  PSKEEQARIEQIRAEARER 48
           P++ +     +I  EARER
Sbjct: 197 PTRAQLEEATRIVEEARER 215


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 785,845
Number of extensions: 31598
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 20
Length of query: 51
Length of database: 5,994,473
Length adjustment: 24
Effective length of query: 27
Effective length of database: 5,475,881
Effective search space: 147848787
Effective search space used: 147848787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)