RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780209|ref|YP_003064622.1| hypothetical protein CLIBASIA_00470 [Candidatus Liberibacter asiaticus str. psy62] (51 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 30.3 bits (68), Expect = 0.12 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 8/29 (27%) Query: 18 ISG------GLCFN--RPKGPSKEEQARI 38 +SG GL + K PS +Q+RI Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407 >2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase; fatty acid biosynthesis, phosphopantetheine transferase, coenzyme A; HET: COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A* Length = 323 Score = 24.3 bits (52), Expect = 6.7 Identities = 5/20 (25%), Positives = 7/20 (35%) Query: 31 SKEEQARIEQIRAEARERRY 50 EE+ RI Q + Sbjct: 51 QPEEKERIGQFVFARDAKAA 70 >1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1 PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A Length = 203 Score = 23.9 bits (52), Expect = 9.6 Identities = 7/20 (35%), Positives = 9/20 (45%) Query: 28 KGPSKEEQARIEQIRAEARE 47 G Q R+ QIR + E Sbjct: 163 VGEEAAIQGRVAQIRQQIEE 182 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.132 0.361 Gapped Lambda K H 0.267 0.0581 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 380,830 Number of extensions: 10901 Number of successful extensions: 65 Number of sequences better than 10.0: 1 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 9 Length of query: 51 Length of database: 5,693,230 Length adjustment: 23 Effective length of query: 28 Effective length of database: 5,135,618 Effective search space: 143797304 Effective search space used: 143797304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.4 bits)