RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780209|ref|YP_003064622.1| hypothetical protein
CLIBASIA_00470 [Candidatus Liberibacter asiaticus str. psy62]
         (51 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.3 bits (68), Expect = 0.12
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 8/29 (27%)

Query: 18  ISG------GLCFN--RPKGPSKEEQARI 38
           +SG      GL     + K PS  +Q+RI
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407


>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl
          transferase; fatty acid biosynthesis,
          phosphopantetheine transferase, coenzyme A; HET: COA;
          1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A*
          Length = 323

 Score = 24.3 bits (52), Expect = 6.7
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 31 SKEEQARIEQIRAEARERRY 50
            EE+ RI Q       +  
Sbjct: 51 QPEEKERIGQFVFARDAKAA 70


>1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding,
           phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1
           PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A
          Length = 203

 Score = 23.9 bits (52), Expect = 9.6
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 28  KGPSKEEQARIEQIRAEARE 47
            G     Q R+ QIR +  E
Sbjct: 163 VGEEAAIQGRVAQIRQQIEE 182


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 380,830
Number of extensions: 10901
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 9
Length of query: 51
Length of database: 5,693,230
Length adjustment: 23
Effective length of query: 28
Effective length of database: 5,135,618
Effective search space: 143797304
Effective search space used: 143797304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)